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The GIS Weasel: An interface for the development of geographic information used in environmental simulation modeling

The GIS Weasel is a freely available, open-source software package built on top of ArcInfo Workstation?? [ESRI, Inc., 2001, ArcInfo Workstation (8.1 ed.), Redlands, CA] for creating maps and parameters of geographic features used in environmental simulation models. The software has been designed to minimize the need for GIS expertise and automate the preparation of the geographic information as much as possible. Although many kinds of data can be exploited with the GIS Weasel, the only information required is a raster dataset of elevation for the user's area of interest (AOI). The user-defined AOI serves as a starting point from which to create maps of many different types of geographic features, including sub-watersheds, streams, elevation bands, land cover patches, land parcels, or anything else that can be discerned from the available data. The GIS Weasel has a library of over 200 routines that can be applied to any raster map of geographic features to generate information about shape, area, or topological association with other features of the same or different maps. In addition, a wide variety of parameters can be derived using ancillary data layers such as soil and vegetation maps.

Computers & Geosciences↗

Resource and land information for south Dade County, Florida

South Dade County, at the southeast corner of Florida, exemplifies many of the environmental concerns that have developed throughout the United States. Considerable environmental information has recently been assembled from this region, and some of it is presented in this experimental report in folio form.

Florida↗

Ground-water models as a management tool in Florida

Highly sophisticated computer models provide powerful tools for analyzing historic data and for simulating future water levels, water movement, and water chemistry under stressed conditions throughout the ground-water system in Florida. Models that simulate the movement of heat and subsidence of land in response to aquifer pumping also have potential for application to hydrologic problems in the State. Florida, with 20 ground-water modeling studies reported since 1972, has applied computer modeling techniques to a variety of water-resources problems. Models in Florida generally have been used to provide insight to problems of water supply, contamination, and impact on the environment. The model applications range from site-specific studies, such as estimating contamination by wastewater injection at St. Petersburg, to a regional model of the entire State that may be used to assess broad-scale environmental impact of water-resources development. Recently, groundwater models have been used as management tools by the State regulatory authority to permit or deny development of water resources. As modeling precision, knowledge, and confidence increase, the use of ground-water models will shift more and more toward regulation of development and enforcement of environmental laws. (USGS)

Water-Resources Investigations Report↗

Environmental Characteristics and Geographic Information System Applications for the Development of Nutrient Thresholds in Oklahoma Streams

The U.S.Environmental Protection Agency has developed nutrient criteria using ecoregions to manage and protect rivers and streams in the United States. Individual states and tribes are encouraged by the U.S. Environmental Protection Agency to modify or improve upon the ecoregion approach. The Oklahoma Water Resources Board uses a dichotomous process that stratifies streams using environmental characteristics such as stream order and stream slope. This process is called the Use Support Assessment Protocols, subchapter15. The Use Support Assessment Protocols can be used to identify streams threatened by excessive amounts of nutrients, dependant upon a beneficial use designation for each stream. The Use Support Assessment Protocols, subchapter 15 uses nutrient and environmental characteristic thresholds developed from a study conducted in the Netherlands, but the Oklahoma Water Resources Board wants to modify the thresholds to reflect hydrologic and ecological conditions relevant to Oklahoma streams and rivers. Environmental characteristics thought to affect impairment from nutrient concentrations in Oklahoma streams and rivers were determined for 798 water-quality sites in Oklahoma. Nutrient, chlorophyll, water-properties, and location data were retrieved from the U.S. Environmental Protection Agency STORET database including data from the U.S. Geological Survey, Oklahoma Conservation Commission, and Oklahoma Water Resources Board. Drainage-basin area, stream order, stream slope, and land-use proportions were determined for each site using a Geographic Information System. The methods, procedures, and data sets used to determine the environmental characteristics are described.

Water-Resources Investigations Report↗

Physical condition and stress levels during early development reflect feeding rates and predict pre- and post-fledging survival in a nearshore seabird

The effects of acute environmental stressors on reproduction in wildlife are often difficult to measure because of the labour and disturbance involved in collecting accurate reproductive data. Stress hormones represent a promising option for assessing the effects of environmental perturbations on altricial young; however, it is necessary first to establish how stress levels are affected by environmental conditions during development and whether elevated stress results in reduced survival and recruitment rates. In birds, the stress hormone corticosterone is deposited in feathers during the entire period of feather growth, making it an integrated measure of background stress levels during development. We tested the utility of feather corticosterone levels in 3- to 4-week-old nestling brown pelicans ( Pelecanus occidentalis ) for predicting survival rates at both the individual and colony levels. We also assessed the relationship of feather corticosterone to nestling body condition and rates of energy delivery to nestlings. Chicks with higher body condition and lower corticosterone levels were more likely to fledge and to be resighted after fledging, whereas those with lower body condition and higher corticosterone levels were less likely to fledge or be resighted after fledging. Feather corticosterone was also associated with intracolony differences in survival between ground and elevated nest sites. Colony-wide, mean feather corticosterone predicted nest productivity, chick survival and post-fledging dispersal more effectively than did body condition, although these relationships were strongest before fledglings dispersed away from the colony. Both reproductive success and nestling corticosterone were strongly related to nutritional conditions, particularly meal delivery rates. We conclude that feather corticosterone is a powerful predictor of reproductive success and could provide a useful metric for rapidly assessing the effects of changes in environmental conditions, provided pre-existing baseline variation is monitored and understood.

Gulf of Mexico↗

Development of a quantitative PCR assay for detecting Egeria densa in environmental DNA samples

Brazilian elodea ( Egeria densa ) is an invasive freshwater plant that demonstrates widespread ecological impacts in freshwater ecosystems and causes substantial economic damage. Here, we developed an environmental DNA assay for detection of E. densa to provide resource managers with a tool for early detection, identification, and monitoring of invasive populations.

Conservation Genetics Resources↗

A python framework for environmental model uncertainty analysis

We have developed pyEMU, a python framework for Environmental Modeling Uncertainty analyses, open-source tool that is non-intrusive, easy-to-use, computationally efficient, and scalable to highly-parameterized inverse problems. The framework implements several types of linear (first-order, second-moment (FOSM)) and non-linear uncertainty analyses. The FOSM-based analyses can also be completed prior to parameter estimation to help inform important modeling decisions, such as parameterization and objective function formulation. Complete workflows for several types of FOSM-based and non-linear analyses are documented in example notebooks implemented using Jupyter that are available in the online pyEMU repository. Example workflows include basic parameter and forecast analyses, data worth analyses, and error-variance analyses, as well as usage of parameter ensemble generation and management capabilities. These workflows document the necessary steps and provides insights into the results, with the goal of educating users not only in how to apply pyEMU, but also in the underlying theory of applied uncertainty quantification.

Environmental Modelling and Software↗

Environmental geochemistry and sediment quality in Lake Pontchartrain: database development and review

This paper reports on preliminary results of a project to develop a comprehensive data base of chemical and environmental information on sediments from Lake Pontchartrain, Louisiana, and surrounding water bodies. The goal is to evaluate all data for reliability and comparability, and to make it widely accessible and useful to all users. Methods for processing heterogeneous, historical data follow previous methods employed in the Boston Harbor and Massachusetts Bay area. Data from 11 different data sets, encompassing about 900 total samples, have been entered to date. Questionable or anomalous data were noted in a minority of cases. Problems tend to follow distinct patterns and are relatively easy to identify. Hence, comparability of data has not proven to be the major obstacle to synthesis efforts that was anticipated in earlier years (NRC, 1989). Quality-controlled data sets show that the bulk of sediment samples in the more central parts of Lake Pontchartrain have values within normal background for heavy metals like Cu, Pb, and Zn. The same or lower concentrations were found in the vicinity of the Bonnet Carre Spillway, representing influx from the Mississippi River. Mean concentrations for Cu, Pb, and Zn were 17, 21, and 74 µg/g (total dissolution analyses), respectively. However, values as high as 267 µg/g Pb and comparable increases for other metal and organic contaminants are found in sediments within 2 km of the coastal strip of New Orleans. Additional sampling in such areas and in other inland coastal waterways is needed, since such levels are above the threshold for potential toxic effects on benthic organisms, according to effects-based screening criteria. The most contaminated sites, Bayou Trepagnier and Bayou Bonfouca, involve industrial areas where waste discharge has now been controlled or remediated, but where sediments may retain large concentrations of contaminants, e.g. tenths of a percent of Pb, Cr, and Zn or more for Bayou Trepagnier.

Louisiana↗

A socio-environmental geodatabase for integrative research in the transboundary Rio Grande/Río Bravo basin

Management of water resources in the transboundary Rio Grande/Río Bravo Basin (the Basin) presents challenges for state and Federal entities in the United States and Mexico making management decisions on shared water resources. Damming, channelization, water availability, and allocation are governed by water rights and water-sharing agreements. Data and information sharing are important aspects of transboundary cooperation, but differences in format, content, spatial and temporal resolution, and language hinder collaboration. In addition, data on the kinds and geographic distribution of water governance and management institutions across the Basin have not been consistently documented. Existing data disparities parallel the hydrological and social fragmentation of the Basin. Seeking to underscore the interdependence between social and environmental processes in the Basin, anthropologists and modelers collaborated to develop a socio-environmental geodatabase. This geodatabase is a first step in modeling the social components of decision making and their connectivity to environmental processes across the Basin. The geodatabase is available in an open-access domain and contains geospatial data related to water and land governance, hydrology, water use and hydraulic infrastructure, socioeconomics, and the biophysical environment necessary to advance the understanding of basin dynamics. Having these data documented and compiled in a central location serves as a resource to help decision makers better understand upstream and downstream social-environmental characteristics. This knowledge is useful for developing sustainable water management policies in a region where water resources are increasingly under pressure from climatic, environmental, and human-related changes.

Chihuahua, New Mexico, Texas↗

Biogeographic freshwater fish pattern legacy revealed despite rapid socio-economic changes in China

Understanding drivers of freshwater fish assemblages is critically important for biodiversity conservation strategies, especially in rapidly developing countries, which often have environmental protections lagging behind economic development. The influences of natural and human factors in structuring fish assemblages and their relative contributions are likely to change given the increasing magnitude of human activities. To discriminate natural and human drivers of fish diversity and assemblage patterns in developing countries with rapid socio-economic development, a dataset of 908 freshwater fish species and 13 metrics including three categories of both natural (i.e., biogeographic) and human drivers (i.e., economic growth, inland fisheries) in China were analysed with machine learning algorithms (i.e., self-organizing map, random forest). Here, we found that biogeographic drivers explained 21.8% of the observed fish assemblage patterns in China and remained stronger predictors when compared to human drivers (i.e., 15.6%, respectively). Freshwater fish species richness was positively correlated to rainfall, air temperature, surface water area and inland fisheries production but negatively correlated with urbanization. In addition, the strong structuring effects of climatic variables on Chinese fish richness patterns suggested that the fish assemblages could be particularly vulnerable to climate change. Our results showed that natural biogeographic factors still dominate in driving freshwater fish assemblage patterns despite increased human disturbances on aquatic ecosystems in a rapidly developing country. These findings consequently suggested that we should consider both natural (e.g., climate) and human (e.g., urbanization, inland fisheries) factors when establishing aquatic conservation strategies and priorities for developing countries that are experiencing rapid socio-economic changes.

Fish and Fisheries↗

Quantifying water requirements of riparian river red gum ( Eucalyptus camaldulensis ) in the Murray-Darling Basin, Australia: Implications for the management of environmental flows

Water resource development and drought have altered river flow regimes, increasing average flood return intervals across floodplains in the Murray-Darling Basin, Australia, causing health declines in riparian river red gum ( Eucalyptus camaldulensis ) forests and woodlands. Environmental flow allocations helped to alleviate water stress during the recent Millennium Drought (1997–2010), however, quantification of the flood frequency required to support healthy E. camaldulensis communities is still needed. We quantified water requirements of E. camaldulensis for two years across a flood gradient (trees inundated at frequencies of 1:2, 1:5 and 1:10 years) at Yanga National Park, New South Wales to help inform management decision-making and design of environmental flows. Sap flow, evaporative losses and soil moisture measurements were used to determine transpiration, evapotranspiration and plant-available soil water before and after flooding. A formula was developed using plant-available soil water post-flooding and average annual rainfall, to estimate maintenance time of soil water reserves in each flood frequency zone. Results indicated that soil water reserves could sustain 1:2 and 1:5 trees for 15 months and six years, respectively. Trees regulated their transpiration rates, allowing them to persist within their flood frequency zone, and showed reduction in active sapwood area and transpiration rates when flood frequencies exceeded 1:2 years. A leaf area index of 0.5 was identified as a potential threshold indicator of severe drought stress. Our results suggest environmental water managers may have greater flexibility to adaptively manage floodplains in order to sustain E. camaldulensis forests and woodlands than has been appreciated hitherto.

New South Wales↗

Landscape conservation design for enhancing the adaptive capacity of coastal wetlands in the face of sea-level rise and coastal development

Coastal wetlands provide many valuable benefits to people and wildlife, including critical habitat, improved water quality, reduced flooding impacts, and protected coastlines. However, in the 21st century, accelerated sea-level rise and coastal development are expected to greatly alter coastal landscapes across the globe. The future of coastal wetlands is uncertain, challenging coastal environmental managers to develop conservation strategies that will increase the resilience of these valuable ecosystems to change and preserve the benefits they provide. One strategy for preparing for the effects of sea-level rise is to ensure that there is space available for coastal wetlands to migrate inland. In a recent study, we identified areas where coastal wetlands may move inland along the northern Gulf of Mexico coast, one of the most wetland-rich and sea-level rise sensitive regions of the world. Building on these findings, this project produced customized landscape conservation-design products focused on identifying landward migration routes for coastal wetlands. The resulting products provide environmental managers with information to make decisions to enhance the capacity of coastal wetlands to adapt to sea-level rise and coastal development, protecting these ecosystems and the critical economic and ecological benefits that they provide.

Alabama, Florida, Louisiana, Mississippi, Texas↗

Critical environmental areas program workshops: A synopsis of results

Problems besetting the development of State Critical Environmental Areas Programs were discussed at a series of six workshops sponsored by the Resource and Land Investigations (RALI) Program and Office of Land Use and Water Policy (OLUWP) of the Department of the Interior. The major problems were determined to be: program justification, effective utilization of existing institutions, the individuality of State needs, the length of time over which benefits would accrue to such programs, the roles and interactions of different levels of government, an acceptable measure for program success, public involvement in program development, information and data handling problems, and program priorities. The role of the Federal Government was thought to be a critical factor in developing such programs, especially in the western States where Federal land ownership may subordinate State planning efforts. Priorities in Critical Environmental Areas Programs were seen to be closely tied to concern for preservation of ways-of-life, a concern which broadens the Critical Environmental Areas concept from mainly environmental to societal in scope. The utility of the workshop format as a means of idea exchange is discussed in light of these examples.

Open-File Report↗

Sociocultural and institutional drivers and constraints to mineral supply; the meaning of scarcity in the 21st century: drivers and constraints to the supply of minerals using regional, national and global perspectives

The sociocultural dimensions of mineral supply at the outset of the 21st century are making the supply process increasingly complex. The dimensions encompass legal, financial, environmental, cultural, and global implications of mining, and are driving unprecedented change in the way minerals supply will be accomplished in the future. Minerals scarcity on a global scale is subordinate to other societal issues about mineral resources and reserves estimated to meet society's demands for decades to centuries in the future. This report reviews historical and present-day sociocultural drivers of change, and reactions of the minerals industry to these drivers. It is reflective primarily of conditions in the United States, but also uses examples from other countries. It expresses viewpoints on sociocultural drivers as seen by constituents of the minerals industry and several other communities of interest including Aboriginal peoples, non-government organizations; labor; mining-dependent communities; mining-affected communities; researchers; and government (federal, state/provincial, and local). It provides overviews of the demand for minerals in the United States, and the status of land available for mining. The report uses a case study of a metals mining project in Wisconsin to illustrate specific sociocultural drivers and constraints to minerals supply, and how these influence the minerals industry. Over the past 150 years, a progression of sociocultural movements under the headings of conservationism, environmentalism, and sustainable development have nurtured societal values that have come to influence the mineral supply process in important ways. These movements reflect a continuing tension between the demand for minerals and other resources, and the simultaneous demand for aesthetic, spiritual, ecological, cultural, and other attributes of the land. The tension is an important element in current international debates about the meaning and future of sustainable development. This report focuses on some of the social challenges to the minerals industry to supply minerals, while at the same time providing environmental protection, economic growth, and sociocultural acceptance. All these issues fall under the rubric of sustainable development. It also describes current industry responses to sustainability, including the Global Mining Initiative (2001a), an attempt to introduce major changes in global industry practices to begin the 21st century. This report complements other documents in the series on physical supply, technological advancement, and economic and policy drivers (Wilburn and others, 2001).

Open-File Report↗

The roles of environmental variation and parasite survival in virulence–transmission relationships

Disease outbreaks are a consequence of interactions among the three components of a host–parasite system: the infectious agent, the host and the environment. While virulence and transmission are widely investigated, most studies of parasite life-history trade-offs are conducted with theoretical models or tractable experimental systems where transmission is standardized and the environment controlled. Yet, biotic and abiotic environmental factors can strongly affect disease dynamics, and ultimately, host–parasite coevolution. Here, we review research on how environmental context alters virulence–transmission relationships, focusing on the off-host portion of the parasite life cycle, and how variation in parasite survival affects the evolution of virulence and transmission. We review three inter-related ‘approaches’ that have dominated the study of the evolution of virulence and transmission for different host–parasite systems: (i) evolutionary trade-off theory, (ii) parasite local adaptation and (iii) parasite phylodynamics. These approaches consider the role of the environment in virulence and transmission evolution from different angles, which entail different advantages and potential biases. We suggest improvements to how to investigate virulence–transmission relationships, through conceptual and methodological developments and taking environmental context into consideration. By combining developments in life-history evolution, phylogenetics, adaptive dynamics and comparative genomics, we can improve our understanding of virulence–transmission relationships across a diversity of host–parasite systems that have eluded experimental study of parasite life history.

Royal Society Open Science↗

Hydrology and environmental aspects of Erie Canal (1817-99)

As the first major water project in the United States, the old Erie Canal provides an example of the hydrological and environmental consequences of water development. The available record shows that the project aroused environmental fears that the canal might be impaired by the adverse hydrologic effects of land development induced by the canal. Water requirements proved greater than anticipated, and problems of floods and hydraulic inefficiencies beset navigation throughout its history. The Erie Canal proved the practicality of major hydraulic works to the extent that operations and maintenance could cope with the burdens of deficiencies in design. The weight of prior experience that upland streams, such as the Potomac and Mohawk Rivers, had proved unsatisfactory for dependable navigation, led to a decision to build an independent canal which freed the location from the constraints of river channels and made possible a cross-country water route directly to Lake Erie. The decision on dimensioning the canal prism--chiefly width and depth-involved balance between a fear of building too small and thus not achieving the economic potentials, and a fear of building too expensively. The constraints proved effective, and for the first part of its history the revenues collected were sufficient to repay all costs. So great was the economic advantage of the canal that the rising trend in traffic soon induced an enlargement of the canal cross section, based upon a new but riskier objective-build as large as the projected trend in toll revenues would finance. The increased revenues did not materialize. Water supplies were a primary concern for both the planners and the operators of the canal. Water required for lockage, although the most obvious to the planners, proved to be a relatively minor item compared with the amounts of water that were required to compensate for leakage through the bed and banks of the canal. Leakage amounted to about 8 inches of depth per day. The total quantities of water taken into the canal made it the largest hydraulic undertaking of the 19th century in the United States. The diversion of water to factories that were attracted to the canal as a source of hydraulic power added to the water requirements. Although new feeders and reservoirs to extend the supply were built throughout the canal's history, these efforts to cope with water shortages were never fully successful. The primary cause of the persistent deficiencies in supply was the method used to estimate the available flow of the. streams during extended dry spells. Ad hoc, spot measurements of streamflow consistently led to overestimation of the dependable supply. There was a persistent hydraulic problem as well. The cross section of the canal, especially when obstructed by many barges, was inadequate to convey the large volumes of water needed to maintain navigable depths over the long distances between feeders. The major flood problem was caused by cross-drainage--the small creeks that crossed under the canal in culverts. Washout of culverts was a never-ending source of sporadic disruption of traffic of 1 or 2 weeks duration. Repairs and replacements could not cope with the problem created by deficiency in information ,about the flood potentials of 'the small streams. A fortunate occurrence of severe floods in 1817 at the start of canal construction provided such clear and persuasive evidence of the flood potentials of the, Mohawk River, which the canal followed for about 110 miles, so as to compel putting the canal at a high level in difficult terrain. Environmental anxieties, broached early in the planning of the canal, centered on the potentially adverse effects of land development and deforestation on floods, water supply, and erosion. The flow of rivers did not decrease as originally feared. Land use did not increase the intensity of flooding and so endanger the canal. Viewed first as a conveyor of pure water from Lake

Water Supply Paper↗

A regional assessment of potential environmental hazards to and limitations on petroleum development of the Southeastern United States Atlantic continental shelf, slope, and rise, offshore North Carolina

More than 11,000 km of high-resolution seismic-reflection data, 325 km of mid-range sidescan-sonar data, and 500 km of long-range sidescan-sonar data were examined and used to construct an environmental geology map of the Continental Shelf, Slope, and Rise for the area of the U.S. Atlantic margin between lats. 32?N. and 37?N. Hardgrounds and two faults described in previous literature also are shown on the map. On the Continental Shelf, at least two faults, the Helena Banks fault and the White Oak lineament, appear to be tectonic in origin. However, a lack of historical seismicity associated with these faults indicates that they are probably not active at the present time. Hardgrounds are widely scattered but are most abundant in Onslow Bay. Although paleostream channels are common nearshore, they do not appear to be common on the central and outer shelf except off Albemarle Sound where extensive Pleistocene, Pliocene, and late Miocene channels extend across the shelf. Mobile bottom sediments are confined mainly to the shoals off Cape Romain, Cape Fear, Cape Lookout, and Cape Hatteras. Elsewhere the sand cover is thin, and older more indurated rocks are present in subcrop. No slope-instability features were noted on the Florida-Hatteras slope off North Carolina. The lack of features indicates that this slope is relatively stable. Evidence for scour by strong currents is ubiquitous on the northern Blake Plateau although deep-water reefs are sparse. The outer edge of the plateau is dominated by a major growth fault and numerous splay and antithetic faults. These faults are the product of salt tectonism in the Carolina trough and thus are not associated with seismicity. Displacements observed near the sea floor and breached diapirs offshore indicate that the main fault is still moving. Associated with the faults are collapse features that are interpreted to be caused by karst solution and cavernous porosity in Eocene and Oligocene limestones at depth. Major slumps have taken place in two large areas of the Continental Slope. Seismic-reflection profiles of the southern area, centered on the lower slope at 1at. 33?N., long. 76?W., show a 80-m-hlgh scarp in which bedding has been truncated. Rotational slump faults are present in this area on the middle and upper slope. Sidescan images show that large blocks have slid downslope from the scarp face, furrowing the bottom. High-resolution (3.5-kHz) records show that the rotational slump faults upslope are active. The association of these slumps and the scarps with salt diapirs suggests subsidence accompanying salt tectonism as the cause. Seismic-reflection records over the northern area, at about fat. 36?20'N., long. 74?40'W., show two steep scarps, each about 225 m high on the upper and middle-slope. These slump scars and an absence of Pleistocene sediments indicate that large blocks of the slope have been removed by slumping. The slope north of fat. 35?N. is highly dissected by canyons. Mid-range sidescan-sonar records suggest that the canyons are the product of mass wasting and have probably formed largely by slumping. Sediments in a wide zone on the upper rise are highly disturbed and faulted owing to salt tectonism. Twenty-six salt diapirs are mapped, as is a zone of disturbed bottom related to salt tectonism. An area of frozen bottom (clathrate) under which shallow free gas is trapped underlies the outer Blake Plateau, the slope, and the upper rise. Although the hazards of drilling into or through clathrates have not been tested, the release of gas from beneath this frozen layer may prove to be a primary hazard to exploration.

Open-File Report↗