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At least 145 records · Page 8Linked to original sources
USGS2024

High genetic diversity, low population genetic structure, strong natal philopatry, and longevity revealed in the Black Swift (Cypseloides niger borealis)

Genetic diversity is a critical cornerstone of biodiversity and is a central goal in management and conservation biology. Such diversity has implications for survivability, adaptability, and resiliency of a species. This study aimed to determine levels of genetic diversity and population genetic structure in the Northern Black Swift ( Cypseloides niger borealis ). This species nests across western North America as far north as Canada and south into Mexico, migrating annually to wintering areas in western Brazil. Colonies occur in isolated areas where appropriate nesting habitat is available, and in many cases, colonies are widely separated from each other. Banding data revealed that adults of this long-lived species return to their same breeding colony annually for many years. Additionally, some females exhibit natal philopatry, returning to and successfully raising offspring at the colony where they were hatched. This allowed us to hypothesize that we might expect some amount of genetic structure in the samples we studied. The life history characteristics of this species suggest that breeding colonies might be more genetically differentiated than other migratory birds that tend to have limited population genetic structure across their ranges. We used newly developed species-specific microsatellite primers to examine levels of genetic diversity and connectivity among 6 Black Swift colonies in the western United States. Levels of genetic diversity were generally high (expected heterozygosity ranging from 0.67 to 0.75) and comparable across 3 breeding sites with sufficient sample sizes ( N > 5). Principal coordinates analysis and STRUCTURE analysis showed no real clustering of individuals in regard to colonies, suggesting one panmictic metapopulation rather than multiple populations that are genetically distinct as we had previously hypothesized based on banding data. This is the first study to elucidate the genetic structure among colonies of Black Swift.

Colorado, Idaho, New Mexico↗
USGS1999

How grazing and soil quality affect native and exotic plant diversity in Rocky Mountain grasslands

We used multiscale plots to sample vascular plant diversity and soil characteristics in and adjacent to 26 long-term grazing exclosure sites in Colorado, Wyoming, Montana, and South Dakota, USA. The exclosures were 7–60 yr old (31.2 ± 2.5 yr, mean ± 1 se ). Plots were also randomly placed in the broader landscape in open rangeland in the same vegetation type at each site to assess spatial variation in grazed landscapes. Consistent sampling in the nine National Parks, Wildlife Refuges, and other management units yielded data from 78 1000-m 2 plots and 780 1-m 2 subplots. We hypothesized that native species richness would be lower in the exclosures than in grazed sites, due to competitive exclusion in the absence of grazing. We also hypothesized that grazed sites would have higher native and exotic species richness compared to ungrazed areas, due to disturbance (i.e., the intermediate-disturbance hypothesis) and the conventional wisdom that grazing may accelerate weed invasion. Both hypotheses were soundly rejected. Although native species richness in 1-m 2 subplots was significantly higher ( P < 0.05) in grazed sites, we found nearly identical native or exotic species richness in 1000-m 2 plots in exclosures (31.5 ± 2.5 native and 3.1 ± 0.5 exotic species), adjacent grazed plots (32.6 ± 2.8 native and 3.2 ± 0.6 exotic species), and randomly selected grazed plots (31.6 ± 2.9 native and 3.2 ± 0.6 exotic species). We found no significant differences in species diversity (Hill’s diversity indices, N 1 and N 2), evenness (Hill’s ratio of evenness, E 5), cover of various life-forms (grasses, forbs, and shrubs), soil texture, or soil percentage of N and C between grazed and ungrazed sites at the 1000-m 2 plot scale. The species lists of the long-ungrazed and adjacent grazed plots overlapped just 57.9 ± 2.8%. This difference in species composition is commonly attributed solely to the difference in grazing regimes. However, the species lists between pairs of grazed plots (adjacent and distant 1000-m 2 plots) in the same vegetation type overlapped just 48.6 ± 3.6%, and the ungrazed plots and distant grazed plots overlapped 49.4 ± 3.6%. Differences in vegetation and soils between grazed and ungrazed sites were minimal in most cases, but soil characteristics and elevation were strongly correlated with native and exotic plant diversity in the study region. For the 78 1000-m 2 plots, 59.4% of the variance in total species richness was explained by percentage of silt (coefficient = 0.647, t = 5.107, P < 0.001), elevation (coefficient = 0.012, t = 5.084, P < 0.001), and total foliar cover (coefficient = 0.110, t = 2.104, P < 0.039). Only 12.8% of the variance in exotic species cover (log 10 cover) was explained by percentage of clay (coefficient = −0.011, t = −2.878, P < 0.005), native species richness (coefficient = −0.011, t = −2.156, P < 0.034), and log 10 N (coefficient = 2.827, t = 1.860, P < 0.067). Native species cover and exotic species richness and frequency were also significantly positively correlated with percentage of soil N at the 1000-m 2 plot scale. Our research led to five broad generalizations about current levels of grazing in these Rocky Mountain grasslands: (1) grazing probably has little effect on native species richness at landscape scales; (2) grazing probably has little effect on the accelerated spread of most exotic plant species at landscape scales; (3) grazing affects local plant species and life-form composition and cover, but spatial variation is considerable; (4) soil characteristics, climate, anddisturbances may have a greater effect on plant species diversity than do current levels of grazing; and (5) few plant species show consistent, directional responses to grazing or cessation of grazing.

Ecological Applications↗
USGS2012

Correlation of early Paleogene global diversity patterns of large benthic foraminifera with Paleocene-Eocene hyperthermal events

Large benthic foraminifera (LBF) were major contributors to many Paleogene carbonate platforms around the world. These photosymbiotic foraminifera lived in warm, oligotrophic, shallow waters within the photic zone. Such Paleogene families as the nummulitids, alveolinids, and orthophragminids rose to prominence in the late Paleocene, thrived in the early and middle Eocene, and declined in the late Eocene and Oligocene. Diversity data from these three families were studied to understand better the controls on the rise of Paleogene LBFs. Analyzed data included total diversity (total number of species per biozone), number of first occurrences per biozone, and number of last occurrences per biozone. Results indicate that there were four intervals of increased total diversity, increased first occurrence, and increased last occurrence for all three families studied. These four intervals follow closely after important climatic events within the Paleogene: the mid-Paleocene biotic event (MPBE), the Paleocene–Eocene thermal maximum (PETM, a hyperthermal event), the early Eocene Climatic Optimum (EECO) and the middle Eocene Climatic Optimum (MECO). The shallow marine biotic community, on a global scale, reacted to such climatic warming events as the MPBE, PETM, EECO, and MECO, based on these diversity trends. Our data also show a pattern of an increase in the number of last occurrences followed by an increase in the number of first occurrences, which suggests that the overall increase in species diversity is due to faunal turnover, as has been interpreted for the large benthic foraminiferal turnover that occurred at the PETM.

Palaios↗
USGS1994

Species diversity, selectivity, and habitat associations of small mammals from coastal California

Species diversity and habitat associations were documented for small mammals along 16 transects in a semiarid part of coastal California. Peromyscus were the most abundant, comprising 45.3% of all captures, followed by Dipodomys (21.2%), Neotoma (15.1%), and Perognathus (15.0%). Five additional genera made up the remaining captures (3.4%). Peromyscus truei and Perognathus californicus were both common and widespread, accounting for 42.1% of all captures. Both species were found on all but one transect. Neotoma lepida, the third most common species, was captured on rock transects 96% of the time. Dipodomys elephantinus was the fifth most common species, and was found exclusively in chamise chaparral. Species diversity (H') averaged 1.22 and ranged from 0.33 on a chamise chaparral transect to 1.74 on another chamise chaparral transect which crossed the edge of a burn. Nearly all transects demonstrated this same trend for diversity to vary widely both within and between habitats, indicating that local conditions were more of an influence on diversity than broad habitat types. Selectivity, averaged across the ten most common species, was only 0.06, indicating that habitat selectivity was quite low. The most geographically widespread species, Peromyscus maniculatus, was the least selective (0.03), whereas the two species with the smallest geographic ranges, D. venustus and D. elephantinus, showed the greatest habitat selectivity (0.11 and 0.20, respectively). These values are much lower than those reported from short-term studies and suggest that, like species diversity, brief studies may not accurately reflect community-level interactions.

Southwestern Naturalist↗
USGS2018

Effects of the proposed California WaterFix North Delta Diversion on flow reversals and entrainment of juvenile Chinook salmon (Oncorhynchus tshawytscha) into Georgiana Slough and the Delta Cross Channel, northern California

The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather than through the Delta. The collection of water intakes, tunnels, pumping facilities, associated structures, and proposed operations are collectively referred to as California WaterFix. The water intake facilities, hereinafter referred to as the North Delta Diversion (NDD), are proposed to be located on the Sacramento River downstream of the city of Sacramento and upstream of the first major river junction where Sutter Slough branches from the Sacramento River. The NDD can divert a maximum discharge of 9,000 cubic feet per second (ft 3 /s) from the Sacramento River, which reduces the amount of Sacramento River inflow into the Delta. In this report, we conducted three analyses to investigate the effect of the NDD and its proposed operation on entrainment of juvenile Chinook salmon ( Oncorhynchus tshawytscha ) into Georgiana Slough and the Delta Cross Channel (DCC). Fish that enter the interior Delta (the network of channels to the south of the Sacramento River) through Georgiana Slough and the DCC survive at lower rates than fish that use other migration routes (Sacramento River, Sutter Slough, and Steamboat Slough). Therefore, fisheries managers were concerned about the extent to which operation of the NDD would increase the proportion of the population entering the interior Delta, which, all else being equal, would lower overall survival through the Delta by increasing the fraction of the population subject to lower survival rates. Operation of the NDD would reduce flow in the Sacramento River, which has the potential to increase the magnitude and duration of reverse flows of the Sacramento River downstream of Georgiana Slough. In the first analysis, we evaluate the effect of the NDD bypass rules on flow reversals of the Sacramento River downstream of Georgiana Slough. The NDD bypass rules are a set of operational criteria designed to minimize upstream transport of fish into Georgiana Slough and the DCC, and were developed based on previous studies showing that the magnitude and duration of flow reversals increase the proportion of fish entering Georgiana Slough and the DCC. We estimated the frequency and duration of reverse-flow conditions of the Sacramento River downstream of Georgiana Slough under each of the prescribed minimum bypass flows described in the NDD bypass rules. To accommodate adaptive levels of protection during different times of year when juvenile salmon are migrating through the Delta, the NDD bypass rules prescribe a series of minimum allowable bypass flows that vary depending on (1) month of the year, and (2) progressively decreasing levels of protection following a pulse flow event. We determined that the NDD bypass rules increased the frequency and duration of reverse flows of the Sacramento River downstream of Georgiana Slough, with the magnitude of increase varying among scenarios. Constant low-level pumping, the most protective bypass rule that limits diversion to 10 percent of the maximum diversion and is implemented following a pulse-flow event, led to the smallest increase in frequency and duration of flow reversals. In contrast, we found that some scenarios led to sizeable increases in the fraction of the day with reverse flow. The conditions under which the proportion of the day with reverse flow can increase by greater than or equal to 10 percentage points between October and June, when juvenile salmon are present in the Delta, include October–November bypass rules and level-3 post-pulse operations during December–June. These conditions would be expected to increase the proportion of juvenile salmon entering the interior Delta through Georgiana Slough. In the second analysis, we assessed bias in Delta Simulation Model 2 (DSM2) flow predictions at the junction of the Sacramento River, DCC, and Georgiana Slough. Because DSM2 was being used to simulate California WaterFix operations, understanding the extent of bias relative to USGS streamgages was important since fish routing models were based on flow data at streamgages. We determined that river flow predicted by DSM2 was biased for Georgiana Slough and the Sacramento River. Therefore, for subsequent analysis, we bias-corrected the DSM2 flow predictions using measured stream flows as predictor variables. In the third analysis, we evaluated the effect of the NDD on the daily probability of fish entering Georgiana Slough and the DCC. We applied an existing model to predict entrainment from 15-minute flow simulations for an 82-year time series of flows simulated by DSM2 under the Proposed Action (PA), where the North Delta Diversion is implemented under California WaterFix, and the No Action Alternative (NAA), where the diversion is not implemented. To estimate the daily fraction of fish entering each river channel, entrainment probabilities were averaged over each day. To evaluate the two scenarios, we then compared mean annual entrainment probabilities by month, water year classification, and three different assumed run timings. Overall, the probability of remaining in the Sacramento River was lower under the PA scenario, but the magnitude of the difference was small ( 3 /s. At flows greater than 41,000 ft 3 /s, we hypothesize that entrainment into the interior Delta is relatively constant, which would have caused little difference between scenarios at higher flows.

California↗
USGS1993

Simulated effects of the proposed Garrison Diversion Unit on streamflow and dissolved solids in the Sheyenne River and the Red River of the North, North Dakota and Minnesota

Future development of the Garrison Diversion Unit in North Dakota could deliver 100 cubic feet per second of water for the cities of Fargo, Grand Forks, and surrounding communities. Missouri River water from the Garrison Diversion Unit Sheyenne River water supply would be delivered to the upper reaches of the Sheyenne River, which would convey the water to the Red River of the North. Potential effects of releasing Missouri River water to the Sheyenne River on the quantity and quality of streamflow in the Sheyenne River and in the Red River of the North are evaluated for two proposed operating plans year-round operation (12 months each year) and nonwinter operation (April through October each year). The Project Canals, Reservoirs, and River Systems (PROCRRS) and Canals, Rivers, and Reservoirs Salinity Accounting Procedures (CRRSAP) monthly accounting models are used to predict streamflow and dissolved-solids changes that could result from the proposed release of treated Missouri River water into the Sheyenne River and the Red River of the North. For year-round operation of the Garrison Diversion Unit Sheyenne River water supply for the period 1931-84, the maximum quantity of water that must be delivered to the upper reaches of the Sheyenne River so that 100 cubic feet per second of Missouri River water can be delivered to Fargo, N.Dak., and Grand Forks, N.Dak., was estimated to be about 151 cubic feet per second for August 1976. For nonwinter operation the maximum quantity of water was estimated to be about 210 cubic feet per second. Model simulations were used to assess the effects that operation of the Garrison Diversion Unit Sheyenne River water supply could have on streamflow and water quality of the Sheyenne River and the Red River of the North. Effects were assessed by comparing simulated streamflows that include Missouri River water to baseline conditions, which represent hydrologic conditions before addition of Missouri River water. Simulated mean monthly dissolved-solids concentrations for Sheyenne River nodes for year-round and nonwinter operation of the Garrison Diversion Unit Sheyenne River water supply generally were less than those for baseline conditions. Simulated mean monthly dissolved-solids concentrations for Red River of the North nodes for year-round and nonwinter operation generally were greater than those for baseline conditions. Streamflow for 1933-42 was about 25 percent of the mean annual streamflow for 1931-84. Simulated monthly mean dissolved-solids concentrations for year-round and nonwinter operation for node 125, Sheyenne River near Cooperstown, N.Dak., for the low-flow conditions of 1933-42 were less than those for baseline conditions. Annual variability of simulated dissolved-solids concentrations for year-round operation was less than annual variability for nonwinter operation and for baseline conditions. Simulated monthly mean dissolved-solids concentrations for year-round and nonwinter operation for node 250, Sheyenne River near Kindred, N.Dak., for the low-flow conditions of 1933-42 ranged from 500 to 600 milligrams per liter. Simulated monthly mean dissolved-solids concentrations for baseline conditions ranged from 300 milligrams per liter to greater than 1,000 milligrams per liter. Simulated monthly mean dissolved-solids concentrations for nonwinter operation were less than those for year-round operation. For node 700, Red River of the North at Grand Forks, N.Dak., the magnitude of simulated monthly mean dissolved-solids concentrations for year-round and nonwinter operation for the low-flow conditions of 1933-42 were about the same as those for baseline conditions. Streamflow for 1973-82 was about 30 percent greater than the mean annual streamflow for 1931-84. For the high-flow conditions of 1973-82, simulated monthly mean dissolved-solids concentrations for node 125 for year-round operation ranged from about 325 to 650 milligrams per liter, and simulated monthly mean dissolved-solids concentrations for baseline conditions and for nonwinter operation generally ranged from 325 to 800 milligrams per liter. Simulated monthly mean dissolved-solids concentrations for node 250 for year-round and nonwinter operation were about the same as those for baseline conditions. Simulated monthly mean dissolved-solids concentrations for node 700 for year-round and nonwinter operation also were about the same as those for baseline conditions.

Minnesota, North Dakota↗
USGS2023

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.

Frontiers in Environmental Science↗
USGS2023

Wild rodents harbor high diversity of Arthroderma

Arthroderma is the most diverse genus of dermatophytes, and its natural reservoir is considered to be soil enriched by keratin sources. During a study on the diversity of dermatophytes in wild small rodents in the Czech Republic, we isolated several strains of Arthroderma . To explore the diversity and ecological significance of these isolates from rodents (n = 29), we characterised the strains genetically (i.e., sequenced ITS, tubb and tef1α ), morphologically, physiologically, and by conducting mating experiments. We then compared the rodent-derived strains to existing ITS sequence data from GenBank and the GlobalFungi Database to further investigate biogeography and the association of Arthroderma species with different types of environments. In total, eight Arthroderma species were isolated from rodents, including four previously described species ( A. crocatum , A. cuniculi , A. curreyi , A. quadrifidum ) and four new species proposed herein, i.e., A. rodenticum , A. simile , A. zoogenum and A. psychrophilum . The geographical distribution of these newly described species was not restricted to the Czech Republic nor rodents. Additional isolates were obtained from bats and other mammals, reptiles, and soil from Europe, North America, and Asia. Data mining showed that the genus has a diverse ecology, with some lineages occurring relatively frequently in soil, whereas others appeared to be more closely associated with live animals, as we observed in A. rodenticum . Low numbers of sequence reads ascribed to Arthroderma in soil show that the genus is rare in this environment, which supports the hypothesis that Arthroderma spp. are not soil generalists but rather strongly associated with animals and keratin debris. This is the first study to utilise existing metabarcoding data to assess biogeographical, ecological, and diversity patterns in dermatophytes.

Persoonia - Molecular Phylogeny and Evolution of F↗
USGS2010

Seeding method influences warm-season grass abundance and distribution but not local diversity in grassland restoration

Ecological theory predicts that the arrangement of seedlings in newly restored communities may influence future species diversity and composition. We test the prediction that smaller distances between neighboring seeds in drill seeded grassland plantings would result in lower species diversity, greater weed abundance, and larger conspecific patch sizes than otherwise similar broadcast seeded plantings. A diverse grassland seed mix was either drill seeded, which places seeds in equally spaced rows, or broadcast seeded, which spreads seeds across the ground surface, into 24 plots in each of three sites in 2005. In summer 2007, we measured species abundance in a 1 m 2 quadrat in each plot and mapped common species within the quadrat by recording the most abundant species in each of 64 cells. Quadrat-scale diversity and weed abundance were similar between drilled and broadcast plots, suggesting that processes that limited establishment and controlled invasion were not affected by such fine-scale seed distribution. However, native warm-season (C 4 ) grasses were more abundant and occurred in less compact patches in drilled plots. This difference in C 4 grass abundance and distribution may result from increased germination or vegetative propagation of C 4 grasses in drilled plots. Our findings suggest that local plant density may control fine-scale heterogeneity and species composition in restored grasslands, processes that need to be further investigated to determine whether seed distributions can be manipulated to increase diversity in restored grasslands.

Restoration Ecology↗
USGS2020

Effects of flow diversion on Snake Creek and its riparian cottonwood forest, Great Basin National Park

Snake Creek flows east from the southern Snake Range in Nevada over complex lithology before leaving Great Basin National Park. The river travels over a section of karst limestone where some surface water naturally recharges the groundwater flow system. In 1961 a water diversion pipeline was constructed by downstream water users to transport surface water through the groundwater recharge zone to reduce potential water losses. The diversion pipeline dewaters a 5-km reach for most of the year by transporting water past the recharge zone then returning it to the channel downstream. Snake Creek was incorporated into the newly established Great Basin National Park in 1986, and today park managers and visitors are concerned that the diversion has destabilized Snake Creek’s riparian ecosystem in this arid region where it has high ecological value. The objectives of this study were to 1) document riparian cottonwood forest conditions in the pipeline-dewatered (DW) reach, 2) evaluate Snake Creek water availability and whether it can support a healthy riparian ecosystem, and 3) determine if dewatering has shifted the fluvial system into an unnatural and poorly functioning state. We pursued these ecohydrological study objectives in 11 research investigations of Snake Creek’s DW reach and nearby reference reaches. The research investigations analyzed: 1) riparian forest condition, tree age, growth, and death; 2) tree ring chronologies through time and space; 3) hydroclimatic drivers of tree growth; 4) stable carbon isotopes extracted from tree rings; 5) cottonwood ecophysiology related to water transport and water stress; 6) historical aerial photography; 7) stand-level riparian forest production; 8) groundwater availability as related to surface water and plant rooting zones; 9) near-surface geophysics using electrical resistivity imaging; 10) channel and valley geomorphology; and 11) in-channel wood jams caused by fallen trees. Integrating these diverse research topics provided a full perspective of historical and modern conditions along Snake Creek. We found that modern hydrological conditions in Snake Creek’s DW reach could not maintain the drought-sensitive ecosystem. The riparian cottonwoods ( Populus angustifolia and P. angustifolia x P. trichocarpa ) have experienced significant dieback. Tree mortality was 2.4 times higher in the DW reach than in reference reaches, and surviving trees supported only 60% of the live canopy compared to trees in reference reaches. Changes in the DW reach forest began in the 1960s and became more severe during the last two decades. Stable carbon isotope ratios and branch dieback analyses both demonstrated initial forest adjustments related to water stress beginning in the early 1960s. Tree ring width chronologies indicated two periods of growth decline in the DW relative to control reaches. The first decline in the 1960s represented an immediate adjustment to the modified flow regime, and the second decline in the 2000s demonstrated reduced resilience to atmospheric drought. Aerial photos and stand-level forest production calculations indicated that substantial riparian forest decline occurred in the 1990s–2010s in the DW reach compared to reference reaches. Stable carbon isotope ratios and leaf water potentials revealed that trees in the DW reach experienced greater drought stress than those in reference reaches. Monitoring wells and electrical resistivity surveys both showed riparian water tables to be largely supported by in-channel surface water flow, indicating that the flow diversion removed water that recharges alluvial groundwater and sustains riparian plants. Areas of widespread tree mortality in the DW reach also corresponded to a larger and more unstable channel with a high instream wood load from fallen trees. Modern conditions of Snake Creek in the DW reach robustly suggest that dewatering the river and its associated riparian corridor adversely affected the riparian ecosystem. The degraded condition is likely to persist and intensify unless water is returned to the channel. As we documented during the wet 1980s and the scientific literature suggest, a partial recovery of the riparian ecosystem is likely possible with restored flows.

Nevada↗
USGS2020

Red imported fire ants reduce invertebrate abundance, richness, and diversity in Gopher Tortoise burrows

Gopher Tortoise ( Gopherus polyphemus ) burrows support diverse commensal invertebrate communities that may be of special conservation interest. We investigated the impact of red imported fire ants ( Solenopsis invicta ) on the invertebrate burrow community at 10 study sites in southern Mississippi, sampling burrows (1998–2000) before and after bait treatments to reduce fire ant populations. We sampled invertebrates using an ant bait attractant for ants and burrow vacuums for the broader invertebrate community and calculated fire ant abundance, invertebrate abundance, species richness, and species diversity. Fire ant abundance in gopher tortoise burrows was reduced by >98% in treated sites. There was a positive treatment effect on invertebrate abundance, diversity, and species richness from burrow vacuum sampling which was not observed in ant sampling from burrow baits. Management of fire ants around burrows may benefit both threatened gopher tortoises by reducing potential fire ant predation on hatchlings, as well as the diverse burrow invertebrate community. Fire-ant management may also benefit other species utilizing tortoise burrows, such as the endangered Dusky Gopher Frog and Schaus swallowtail butterfly. This has implications for more effective biodiversity conservation via targeted control of the invasive fire ant at gopher tortoise burrows.

Mississippi↗
USGS2017

Genetic implications of bottleneck effects of differing severities on genetic diversity in naturally recovering populations: An example from Hawaiian coot and Hawaiian gallinule

The evolutionary trajectory of populations through time is influenced by the interplay of forces (biological, evolutionary, and anthropogenic) acting on the standing genetic variation. We used microsatellite and mitochondrial loci to examine the influence of population declines, of varying severity, on genetic diversity within two Hawaiian endemic waterbirds, the Hawaiian coot and Hawaiian gallinule, by comparing historical (samples collected in the late 1800s and early 1900s) and modern (collected in 2012–2013) populations. Population declines simultaneously experienced by Hawaiian coots and Hawaiian gallinules differentially shaped the evolutionary trajectory of these two populations. Within Hawaiian coot, large reductions (between −38.4% and −51.4%) in mitochondrial diversity were observed, although minimal differences were observed in the distribution of allelic and haplotypic frequencies between sampled time periods. Conversely, for Hawaiian gallinule, allelic frequencies were strongly differentiated between time periods, signatures of a genetic bottleneck were detected, and biases in means of the effective population size were observed at microsatellite loci. The strength of the decline appears to have had a greater influence on genetic diversity within Hawaiian gallinule than Hawaiian coot, coincident with the reduction in census size. These species exhibit similar life history characteristics and generation times; therefore, we hypothesize that differences in behavior and colonization history are likely playing a large role in how allelic and haplotypic frequencies are being shaped through time. Furthermore, differences in patterns of genetic diversity within Hawaiian coot and Hawaiian gallinule highlight the influence of demographic and evolutionary processes in shaping how species respond genetically to ecological stressors.

Ecology and Evolution↗
USGS2019

Bats in a changing landscape: Linking occupancy and traits of a diverse montane bat community to fire regime

1. Wildfires are increasing in incidence and severity across the western US, leading to changes in forest structure and wildlife habitats. Knowledge of how species respond to fire-driven habitat changes in these landscapes is limited and generally disconnected from our understanding of adaptations that underpin responses to fire. 2. We aimed to identify relationships between fire regime, physiographic and forest structure variables, and occupancy and functional traits of a diverse bat community, to inform forest management in a fire-prone landscape. 3. We recorded bats acoustically at 83 sites (n = 249 recording nights) across the Plumas National Forest in the northern Sierra Nevada over 3 summers (2015-2017). We investigated relationships between fire regime, physiographic and forest structure and probability of bat occupancy for 9 species. We used fourth corner regression and RLQ analysis to identify ecomorphological traits (body mass; call frequency, bandwidth and duration; and open, edge or clutter (structurally complex vegetation) adapted foraging strategy) driving species-environment relationships across all 17 bat species. 4. Relationships between bat traits and fire regime were driven by adaptations to diverse forest structure. Bats adapted to foraging in open habitats and emitting longer duration and narrow bandwidth calls were associated with higher severity and more frequent fires, and bats adapted to foraging in a more cluttered environment were negatively associated with fire. Relationships between edge-adapted bat species and fire were driven by prey preference or habitat availability and configuration at a landscape scale. 5. Predicted increases in fire frequency and severity in the western US are likely to shift dominance in the bat community to species adapted to open environments and those able to exploit post-fire resource pulses (aquatic insects, beetles, snags). Managing for pyrodiversity within the western US is likely important for maintaining bat community diversity, as well as diversity of other biotic communities. Identifying trait-fire regime relationships will help forest managers develop appropriate management interventions and focus limited resources to provide for a broad range of species.

Ecology and Evolution↗
USGS2022

Riparian forest productivity decline initiated by streamflow diversion then amplified by atmospheric drought 40 years later

Riparian trees and their annual growth rings can be used to reconstruct drought histories related to streamflow. Because the death of individual trees reduces competition for survivors, however, tree-ring chronologies based only on surviving trees may underestimate drought impacts. This problem can be addressed by calculating productivity at the stand scale to account for tree mortality and establishment. In the semi-arid Great Basin in the western United States, we calculated riparian wood production from 1946 to 2016 along a stream where most flow has been removed by a diversion pipeline since 1961. The water table was found to be generally below the root zone of cottonwoods ( Populus angustifolia and P. angustifolia × trichocarpa ) in the pipeline-dewatered reach but within it in reference reaches. To reconstruct forest productivity through time, we separately combined measurements of tree-ring basal area increment with either changing forest area from aerial photos or a census of cross-dated living and dead cottonwoods. Both approaches revealed productivity declines in the dewatered reach relative to adjacent reference reaches, and the decline accelerated in the 2000s. Tree-ring narrowing resulted in divergence between the dewatered reach and one reference reach within 5 years after diversion. However, the dewatered reach did not diverge from the other reference reach until 40 years later, when an unprecedented early 2000s atmospheric drought coupled with diversion to cause extensive cottonwood mortality. We conclude that dendrochronological investigations of forest response to environmental stress should incorporate stand dynamics and that the full impacts of flow diversion can be delayed for decades.

Nevada, Utah↗
USGS2023

Juvenile life history diversity is associated with lifetime individual heterogeneity in a migratory fish

Differences in the life history pathways (LHPs) of juvenile animals are often associated with differences in demographic rates in later life stages. For migratory animals, different LHPs often result in animals from the same population occupying distinct habitats subjected to different environmental drivers. Understanding how demographic rates differ among animals expressing different LHPs may reveal fitness trade-offs that drive the expression of alternative LHPs and enable better prediction of population dynamics in a changing environment. To understand how demographic outcomes and their relationships with environmental variables differ among animals with different LHPs, we analyzed a long-term (2006–2021) mark–recapture dataset for Chinook salmon ( Oncorhynchus tshawytscha ) from the Wenatchee River, Washington, USA. Distinct LHPs represented in this population include either remaining in the natal stream until emigrating to the ocean as a 1-year-old (natal-reach rearing) or emigrating from the natal stream and rearing in downstream habitats for several months before completing the emigration to the ocean as a 1-year-old (downstream rearing). We found that downstream-rearing fish emigrated to the ocean 19 days earlier on average and returned as adults from the ocean at higher rates. We detected a positive correlation between rate of return from the ocean by downstream-rearing fish and coastal upwelling in their spring of outmigration, whereas for natal-reach-rearing fish we detected a positive correlation with sea surface temperature during their first marine summer. Different responses to environmental variability should lead to asynchrony in adult abundance among juvenile LHPs. A higher proportion of downstream-rearing fish returned at younger ages compared with natal-reach-rearing fish, which contributed to variability in age at reproduction and greater mixing across generations. Our results demonstrate how diversity in juvenile LHPs is associated with heterogeneity in demographic rates during subsequent life stages, which can in turn affect variance in aggregate population abundance and response to environmental change. Our findings underscore the importance of considering life history diversity in demographic analyses and provide insights into the effects of life history diversity on population dynamics and trade-offs that contribute to the maintenance of life history diversity.

Washington↗
USGS2021

Intraspecific variation mediates density dependence in a genetically diverse plant species

Interactions between neighboring plants are critical for biodiversity maintenance in plant populations and communities. Intraspecific trait variation and genome duplication are common in plant species and can drive eco-evolutionary dynamics through genotype-mediated plant–plant interactions. However, few studies have examined how species-wide intraspecific variation may alter interactions between neighboring plants. We investigate how subspecies and ploidy variation in a genetically diverse species, big sagebrush ( Artemisia tridentata ), can alter the demographic outcomes of plant interactions. Using a replicated, long-term common garden experiment that represents range-wide diversity of A. tridentata , we ask how intraspecific variation, environment, and stand age mediate neighbor effects on plant growth and survival. Spatially explicit models revealed that ploidy variation and subspecies identity can mediate plant–plant interactions but that the effect size varied in time and across experimental sites. We found that demographic impacts of neighbor effects were strongest during early stages of stand development and in sites with greater growth rates. Within subspecies, tetraploid populations showed greater tolerance to neighbor crowding compared to their diploid variants. Our findings provide evidence that intraspecific variation related to genome size and subspecies identity impacts spatial demography in a genetically diverse plant species. Accounting for intraspecific variation in studies of conspecific density dependence will improve our understanding of how local populations will respond to novel genotypes and biotic interaction regimes. As introduction of novel genotypes into local populations becomes more common, quantifying demographic processes in genetically diverse populations will help predict long-term consequences of plant–plant interactions.

Idaho, Utah↗
USGS2019

Conservation of black bass diversity: An emerging management paradigm

Black bass (Micropterus spp.) are quintessential North American sportfishes that support economically valuable fisheries and act as keystone predators within aquatic ecosystems. Despite their prominence among North American fish fauna, a number of taxonomic designations are unresolved and novel forms continue to be identified within drainages of the southeastern USA. We review the current understanding of black bass diversity, including distributions, evolutionary histories, and phylogenetic relationships. We also provide a brief overview of the major paradigms that have been applied to black bass management and highlight an emerging focus on the conservation of black bass diversity. Black bass diversity is threatened by anthropogenic land- and water-use, fragmentation of fluvial habitats, historic and contemporary stocking of non-native congeners, and climate change. Successful conservation of black bass diversity requires that management agencies prioritize the protection of native species, forms, and lineages within and across jurisdictional boundaries. Collaboration among scientists and resource is needed to develop practical ways to ameliorate current problems created by past and present anthropogenic alterations, while also preparing for future challenges like global climate change.

Fisheries Magazine↗
USGS2006

Diatom diversity in chronically versus episodically acidified adirondack streams

The relationship between algal species richness and diversity, and pH is controversial. Furthermore, it is still unknown how episodic stream acidification following atmospheric deposition affects species richness and diversity. Here we analyzed water chemistry and diatom epiphyton dynamics and showed their contrasting behavior in chronically vs. episodically acidic streams in the Adirondack region. Species richness and diversity were significantly higher in the chronically acidic brown water stream, where organic acidity was significantly higher and the ratio of inorganic to organic monomeric aluminum significantly lower. Conversely, in the episodically acidic clear water stream, the inorganic acidity and pH were significantly higher and the diatom communities were very species-poor. This suggests that episodic acidification in the Adirondacks may be more stressful for stream biota than chronic acidity. Strong negative linear relationships between species diversity, Eunotia exigua, and dissolved organic carbon against pH were revealed after the influence of non-linear temporal trends was partialled out using a novel way of temporal modeling. ?? 2006 WILEY-VCH Verlag GmbH & Co. KGaA.

International Review of Hydrobiology↗