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At least 145 records · Page 8Linked to original sources

Seasonal controls on sediment delivery and hydrodynamics in a vegetated tidally influenced interdistributary island

River deltas are maintained by a continuous supply of terrestrial sediments that provide critical land building material to help sustain and protect vulnerable ecological communities and serve as natural storm protection barriers. Local hydrodynamics are important in determining the degree to which fluvial sediments are removed from the water column and retained on the delta complex. During 2014, we measured hydrodynamics and sediment transport characteristics at one of the world's most rapidly prograding deltas, the Wax Lake delta in Louisiana, USA. We observed waves to be the dominant source of bottom stress for 70% of our observations. Sediment concentration tended to increase with shear stress, but only after stresses exceeded 0.01–0.02 Pa. Significant wave height and bottom stress were substantially reduced after June, when the emergence of American lotus ( Nelumbo lutea ) formed a dense canopy over the intertidal regions of the island splay. Hydrodynamics during these summer vegetated conditions were much more favorable to floc formation, and by extension particle settling, as shown by trends in the Kolmogorov microscale parameter over the course of the measurement campaign. Together, these findings suggest that the timing between peak river discharge and the emergence of vegetation may have a strong influence on rates of progradation in seasonally vegetated delta splays, whereby sediments delivered by flood events that extend late into summer may be governed by hydrodynamics that favor particle deposition, whereas those delivered prior to the summer may be more prone to remain in suspension and bypass the delta complex.

Louisiana↗

Individual variation in prey selection by sea otters: Patterns, causes and implications

1. Longitudinal records of prey selection by 10 adult female sea otters on the Monterey Peninsula, California, from 1983 to 1990 demonstrate extreme inter-individual variation in diet. Variation in prey availability cannot explain these differences as the data were obtained from a common spatial-temporal area. 2. Individual dietary patterns persisted throughout our study, thus indicating that they are life-long characteristics. 3. Individual dietary patterns in sea otters appear to be transmitted along matrilines, probably by way of learning during the period of mother-young association. 4. Efficient utilization of different prey types probably requires radically different sensory/motor skills, each of which is difficult to acquire and all of which may exceed the learning and performance capacities of any single individual. This would explain the absence of generalists and inertia against switching, but not the existence of alternative specialists. 5. Such individual variation might arise in a constant environment from frequency-dependent effects, whereby the relative benefit of a given prey specialization depends on the number of other individuals utilizing that prey. Additionally, many of the sea otter's prey fluctuate substantially in abundance through time. This temporal variation, in conjunction with matrilineal transmission of foraging skills, may act to mediate the temporal dynamics of prey specializations. 6. Regardless of the exact cause, such extreme individual variation in diet has broad ramifications for population and community ecology. 7. The published literature indicates that similar patterns occur in many other species.

Journal of Animal Ecology↗

Spatially robust estimates of biological nitrogen (N) fixation imply substantial human alteration of the tropical N cycle

Biological nitrogen fixation (BNF) is the largest natural source of exogenous nitrogen (N) to unmanaged ecosystems and also the primary baseline against which anthropogenic changes to the N cycle are measured. Rates of BNF in tropical rainforest are thought to be among the highest on Earth, but they are notoriously difficult to quantify and are based on little empirical data. We adapted a sampling strategy from community ecology to generate spatial estimates of symbiotic and free-living BNF in secondary and primary forest sites that span a typical range of tropical forest legume abundance. Although total BNF was higher in secondary than primary forest, overall rates were roughly five times lower than previous estimates for the tropical forest biome. We found strong correlations between symbiotic BNF and legume abundance, but we also show that spatially free-living BNF often exceeds symbiotic inputs. Our results suggest that BNF in tropical forest has been overestimated, and our data are consistent with a recent top-down estimate of global BNF that implied but did not measure low tropical BNF rates. Finally, comparing tropical BNF within the historical area of tropical rainforest with current anthropogenic N inputs indicates that humans have already at least doubled reactive N inputs to the tropical forest biome, a far greater change than previously thought. Because N inputs are increasing faster in the tropics than anywhere on Earth, both the proportion and the effects of human N enrichment are likely to grow in the future.

Proceedings of the National Academy of Sciences of↗

Diets of Longnose Sucker in Yellowstone Lake, Yellowstone National Park, U.S.A.

Invasive species introduction and expansion is the second greatest threat to global biodiversity decline after habitat degradation. Introduced in the 1930s, the benthivorous Longnose Sucker ( Catostomus catostomus ) became established in Yellowstone Lake, Wyoming, USA, and used tributary streams for spawning. With this introduction, concerns were raised regarding their possible competition for food resources with native adfluvial Yellowstone Cutthroat Trout ( Oncorhynchus clarkii bouvieri ). Additionally, insufficient literature exists on Longnose Sucker feeding habits throughout their range, and there has been no comprehensive study of Longnose Sucker diet in Yellowstone Lake. The need exists for understanding the community ecology and food web dynamics in Yellowstone Lake, especially as non-native Lake Trout ( Salvelinus namaycush ) have caused declines in Yellowstone Cutthroat Trout through predation. The objectives of this study were to examine possible size-specific shifts in feeding habits, evaluate feeding strategy, and compare historical and contemporary diet data of Longnose Suckers in Yellowstone Lake. Diet data collected during summer of 2018 were analyzed by length-class to test for size-specific diet shifts. As Longnose Sucker length increased, copepods ( Diacyclops bicuspidatus thomasi, Leptodiaptomus ashlandi or Hesperodiaptomus shoshone ) decreased in proportion by weight. In contrast, dipterans (Chironomidae) and amphipods ( Hyalella spp. or Gammarus spp.) varied in proportion by weight in the diet across length classes. We assessed the feeding strategy by evaluating the relationship between prey-specific abundance and percent frequency of occurrence. This assessment indicates that Longnose Suckers have a heterogeneous diet and generalized feeding strategy as all prey items had a prey-specific abundance value of <50%. Diet composition differed significantly between historical and contemporary samples, likely related to the differences in sampling locations and possibly due to a Lake Trout-induced trophic cascade. This study established the diet composition and feeding habits of Longnose Suckers residing in Yellowstone Lake, thus, expanding our knowledge of Longnose Sucker feeding patterns and ecology.

Wyoming↗

Multistressor predictive models of invertebrate condition in the Corn Belt, USA

Understanding the complex relations between multiple environmental stressors and ecological conditions in streams can help guide resource-management decisions. During 14 weeks in spring/summer 2013, personnel from the US Geological Survey and the US Environmental Protection Agency sampled 98 wadeable streams across the Midwest Corn Belt region of the USA for water and sediment quality, physical and habitat characteristics, and ecological communities. We used these data to develop independent predictive disturbance models for 3 macroinvertebrate metrics and a multimetric index. We developed the models based on boosted regression trees (BRT) for 3 stressor categories, land use/land cover (geographic information system [GIS]), all in-stream stressors combined (nutrients, habitat, and contaminants), and for GIS plus in-stream stressors. The GIS plus in-stream stressor models had the best overall performance with an average cross-validation R 2 across all models of 0.41. The models were generally consistent in the explanatory variables selected within each stressor group across the 4 invertebrate metrics modeled. Variables related to riparian condition, substrate size or embeddedness, velocity and channel shape, nutrients (primarily NH 3 ), and contaminants (pyrethroid degradates) were important descriptors of the invertebrate metrics. Models based on all measured in-stream stressors performed comparably to models based on GIS landscape variables, suggesting that the in-stream stressor characterization reasonably represents the dominant factors affecting invertebrate communities and that GIS variables are acting as surrogates for in-stream stressors that directly affect in-stream biota.

Illinois, Indiana, Iowa, Kansas, Kentucky, Minneso↗

Spatiotemporal pattern of interactions between an apex predator and sympatric species

Increases in apex predator abundance can influence the behavior of sympatric species, particularly when the available habitat and/or resources are limited. We assessed the temporal and spatiotemporal interactions between Florida panthers ( Puma concolor coryi ) and six focal sympatric species in South Florida, where Florida panther abundance has increased by more than 6-fold since the 1990’s. Using camera trap data, we quantified species’ diel activity patterns, temporal overlap, and time-to-encounter (i.e., time between consecutive visits of a Florida panther and a focal species and vice versa). The Florida panther and bobcat ( Lynx rufus ) displayed a nocturnal activity pattern; the black bear ( Ursus americanus ), white-tailed deer ( Odocoileus virginianus ), wild boar ( Sus scrofa ), and wild turkey ( Meleagris gallopavo ) were mostly diurnal; and the raccoon ( Procyon lotor ) was cathemeral. Prey species and black bears minimized encounters with Florida panthers by being active during the day and displaying longer time-to-encounter, whereas Florida panthers visited a site after a prey species at higher probabilities than after competitor species, and were more likely to visit an elevated site or upland habitat. Our results suggest that interactions between Florida panthers and sympatric species in our study system are driven by species-specific behavioral responses. Gaining a better understanding of the crucial interactions driving species coexistence is important for a better understanding of the structure and function of ecological communities and help manage the potential expansion of the Florida panther into Central Florida.

Florida↗

Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models

Quantifying patterns of temporal trends in species assemblages is an important analytical challenge in community ecology. We describe methods of analysis that can be applied to a matrix of counts of individuals that is organized by species (rows) and time-ordered sampling periods (columns). We first developed a bootstrapping procedure to test the null hypothesis of random sampling from a stationary species abundance distribution with temporally varying sampling probabilities. This procedure can be modified to account for undetected species. We next developed a hierarchical model to estimate species-specific trends in abundance while accounting for species-specific probabilities of detection. We analysed two long-term datasets on stream fishes and grassland insects to demonstrate these methods. For both assemblages, the bootstrap test indicated that temporal trends in abundance were more heterogeneous than expected under the null model. We used the hierarchical model to estimate trends in abundance and identified sets of species in each assemblage that were steadily increasing, decreasing or remaining constant in abundance over more than a decade of standardized annual surveys. Our methods of analysis are broadly applicable to other ecological datasets, and they represent an advance over most existing procedures, which do not incorporate effects of incomplete sampling and imperfect detection.

Philosophical Transactions of the Royal Society B:↗

Consequences of migratory coupling of predators and prey when mediated by human actions

Aim Animal migrations influence ecosystem structure, dynamics and persistence of predator and prey populations. The theory of migratory coupling postulates that aggregations of migrant prey can induce large-scale synchronized movements in predators, and this coupling is consequential for the dynamics of ecological communities. The degree to which humans influence these interactions remains largely unknown. We tested whether creation of large resource pulses by humans such as seasonal herding of reindeer Rangifer tarandus and hunting of moose, Alces alces , can induce migratory coupling with Golden Eagles, Aquila chrysaetos, and whether these lead to demographic consequences for the eagles. Location Fennoscandia. Methods We used movement data from 32 tracked Golden Eagles spanning 125 annual migratory cycles over 8 years. We obtained reindeer distribution data through collaboration with reindeer herders based on satellite tracking of reindeer, and moose harvest data from the national hunting statistics for Sweden. We assessed demographic consequences for eagles from ingesting lead from ammunition fragments in moose carcasses through survival estimates and their links with lead concentrations in eagles' blood. Results In spring, eagles migrated hundreds of kilometres to be spatially and temporally coupled with calving reindeer, whereas in autumn, eagles matched their distribution with the location and timing of moose hunt. Juveniles were more likely to couple with reindeer calving, whereas adults were particularly drawn to areas of higher moose harvest. Due to this coupling, eagles ingested lead from spent ammunition in moose offal and carcasses and the resulting lead toxicity increased the risk of mortality by 3.4 times. Main conclusions We show how migratory coupling connects landscape processes and that human actions can influence migratory coupling over large spatial scales and increase demographic risks for predators. We provide vital knowledge towards resolving human–wildlife conflicts and the conservation of protected species over a large spatial and temporal scale.

Diversity and Distributions↗

Running on empty: Recharge dynamics from animal movement data

Vital rates such as survival and recruitment have always been important in the study of population and community ecology. At the individual level, physiological processes such as energetics are critical in understanding biomechanics and movement ecology and also scale up to influence food webs and trophic cascades. Although vital rates and population-level characteristics are tied with individual-level animal movement, most statistical models for telemetry data are not equipped to provide inference about these relationships because they lack the explicit, mechanistic connection to physiological dynamics. We present a framework for modelling telemetry data that explicitly includes an aggregated physiological process associated with decision making and movement in heterogeneous environments. Our framework accommodates a wide range of movement and physiological process specifications. We illustrate a specific model formulation in continuous-time to provide direct inference about gains and losses associated with physiological processes based on movement. Our approach can also be extended to accommodate auxiliary data when available. We demonstrate our model to infer mountain lion ( Puma concolor ; in Colorado, USA) and African buffalo ( Syncerus caffer ; in Kruger National Park, South Africa) recharge dynamics.

Ecology Letters↗

Ice Age biogeography corresponds with current climate vulnerability of freshwater fishes

1. Both local environmental factors and historical biogeography shape ecological communities, but determining which historical biogeographical patterns correspond with contemporary climate vulnerability is an underused conservation method. The historical colonization patterns of freshwater fishes following the Pleistocene (“Ice Age”) glaciations offers an ideal model for comparing historical biogeography and climate-change vulnerability. 2. We used current thermal niches and future stream-temperature projections to estimate the climate vulnerability of 29 Great Plains and Rocky Mountain fishes that we classified as either early or late colonists of the region in the wake of glacial retreat (~19,000 years ago). 3. Ninety-three percent of the most vulnerable species were amongst the earliest colonists of the region and we consider them “postglacial-pioneer species”. Median predicted site loss (number of historically occupied sites predicted to become too warm by end-of-century) was 0% for late colonizing species and 33% for early colonizing species. 4. We provide empirical evidence that postglacial-pioneer fishes are uniquely vulnerable to climate change, and we suggest this may apply to many taxa from formerly glaciated regions. More broadly, we demonstrate that evaluating the relationship between current species-environment patterns and historical biogeography may be a fruitful avenue for future climate change and conservation research.

North America↗

Observed and projected functional reorganization of riverine fish assemblages from global change

Climate and land-use/land-cover change (‘global change’) are restructuring biodiversity, globally. Broadly, environmental conditions are expected to become warmer, potentially drier (particularly in arid regions), and more anthropogenically developed in the future, with spatiotemporally complex effects on ecological communities. We used functional traits to inform Chesapeake Bay Watershed fish responses to future climate and land-use scenarios (2030, 2060, and 2090). We modelled the future habitat suitability of focal species representative of key trait axes (substrate, flow, temperature, reproduction, and trophic) and used functional and phylogenetic metrics to assess variable assemblage responses across physiographic regions and habitat sizes (headwaters through large rivers). Our focal species analysis projected future habitat suitability gains for carnivorous species with preferences for warm water, pool habitats, and fine or vegetated substrates. At the assemblage level, models projected decreasing habitat suitability for cold-water, rheophilic, and lithophilic individuals but increasing suitability for carnivores in the future across all regions. Projected responses of functional and phylogenetic diversity and redundancy differed among regions. Lowland regions were projected to become less functionally and phylogenetically diverse and more redundant while upland regions (and smaller habitat sizes) were projected to become more diverse and less redundant. Next, we assessed how this model projected assemblage changes 2005-2030 related to observed time-series trends (1999–2016). Halfway through the initial projecting period (2005–2030), we found observed trends broadly followed modelled patterns of increasing proportions of carnivorous and lithophilic individuals in lowland regions but showed opposing patterns for functional and phylogenetic metrics. Leveraging observed and predicted analyses simultaneously helps elucidate the instances and causes of discrepancies between model predictions and ongoing observed changes. Collectively, results highlight the complexity of global change impacts across broad landscapes that likely relate to differences in assemblages’ intrinsic sensitivities and external exposure to stressors.

Global Change Biology↗

Bee species richness through time in an urbanizing landscape of the southeastern United State

Compared to non-urban environments, cities host ecological communities with altered taxonomic diversity and functional trait composition. However, we know little about how these urban changes take shape over time. Using historical bee (Apoidea: Anthophila) museum specimens supplemented with online repositories and researcher collections, we investigated whether bee species richness tracked urban and human population growth over the past 118 years. We also determined which species were no longer collected, whether those species shared certain traits, and if collector behavior changed over time. We focused on Wake County, North Carolina, United States where human population size has increased over 16 times over the last century along with the urban area within its largest city, Raleigh, which has increased over four times. We estimated bee species richness with occupancy models, and rarefaction and extrapolation curves to account for imperfect detection and sample coverage. To determine if bee traits correlated with when species were collected, we compiled information on native status, nesting habits, diet breadth, and sociality. We used non-metric multidimensional scaling to determine if individual collectors contributed different bee assemblages over time. In total, there were 328 species collected in Wake County. We found that although bee species richness varied, there was no clear trend in bee species richness over time. However, recent collections (since 2003) were missing 195 species, and there was a shift in trait composition, particularly lost species were below-ground nesters. The top collectors in the dataset differed in how often they collected bee species, but this was not consistent between historic and contemporary time periods; some contemporary collectors grouped closer together than others, potentially due to focusing on urban habitats. Use of historical collections and complimentary analyses can fill knowledge gaps to help understand temporal patterns of species richness in taxonomic groups that may not have planned long-term data.

North Carolina↗

Exploring sensitivity of a multistate occupancy model to inform management decisions

1. Dynamic occupancy models are often used to investigate questions regarding the processes that influence patch occupancy and are prominent in the fields of population and community ecology and conservation biology. Recently, multistate occupancy models have been developed to investigate dynamic systems involving more than one occupied state, including reproductive states, relative abundance states and joint habitat‐occupancy states. Here we investigate the sensitivities of the equilibrium‐state distribution of multistate occupancy models to changes in transition rates. 2. We develop equilibrium occupancy expressions and their associated sensitivity metrics for dynamic multistate occupancy models. To illustrate our approach, we use two examples that represent common multistate occupancy systems. The first example involves a three‐state dynamic model involving occupied states with and without successful reproduction (California spotted owl Strix occidentalis occidentalis ), and the second involves a novel way of using a multistate occupancy approach to accommodate second‐order Markov processes (wood frog Lithobates sylvatica breeding and metamorphosis). 3. In many ways, multistate sensitivity metrics behave in similar ways as standard occupancy sensitivities. When equilibrium occupancy rates are low, sensitivity to parameters related to colonisation is high, while sensitivity to persistence parameters is greater when equilibrium occupancy rates are high. Sensitivities can also provide guidance for managers when estimates of transition probabilities are not available. 4. Synthesis and applications. Multistate models provide practitioners a flexible framework to define multiple, distinct occupied states and the ability to choose which state, or combination of states, is most relevant to questions and decisions about their own systems. In addition to standard multistate occupancy models, we provide an example of how a second‐order Markov process can be modified to fit a multistate framework. Assuming the system is near equilibrium, our sensitivity analyses illustrate how to investigate the sensitivity of the system‐specific equilibrium state(s) to changes in transition rates. Because management will typically act on these transition rates, sensitivity analyses can provide valuable information about the potential influence of different actions and when it may be prudent to shift the focus of management among the various transition rates.

Journal of Applied Ecology↗

Occupancy of yellow-billed and Pacific loons: evidence for interspecific competition and habitat mediated co-occurrence

Interspecific competition is an important process structuring ecological communities, however, it is difficult to observe in nature. We used an occupancy modelling approach to evaluate evidence of competition between yellow-billed ( Gavia adamsii ) and Pacific ( G. pacifica ) loons for nesting lakes on the Arctic Coastal Plain of Alaska. With multiple years of data and survey platforms, we estimated dynamic occupancy states (e.g. rates of colonization or extinction from individual lakes) and controlled for detection differences among aircraft platforms and ground survey crews. Results indicated that yellow-billed loons were strong competitors and negatively influenced the occupancy of Pacific loons by excluding them from potential breeding lakes. Pacific loon occupancy was conditional on the presence of yellow-billed loons, with Pacific loons having almost a tenfold decrease in occupancy probability when yellow-billed loons were present and a threefold decrease in colonization probability when yellow-billed loons were present in the current or previous year. Yellow-billed and Pacific loons co-occurred less than expected by chance except on very large lakes or lakes with convoluted shorelines; variables which may decrease the cost of maintaining a territory in the presence of the other species. These results imply the existence of interspecific competition between yellow-billed and Pacific loons for nesting lakes; however, habitat characteristics which facilitate visual and spatial separation of territories can reduce competitive interactions and promote species co-occurrence.

Alaska↗

Overview of issues in subsurface and landfill microbiology

To date, the majority of evidence indicates that most subsurface environments possess climax ecological communities that are well adapted to the environment in which they live. Like their counterparts on the surface, subsurface ecosystems are characterized by a high degree of microbiological diversity, they possess trophic structure, and they exhibit material cycling and energy transfer. Members of such ecosystems typically possess structural, physiological, or reproductive adaptations that allow them to disperse and survive in such habitats. Current studies argue that microbial activities influence the geochemical processes in both landfills and subsurface environments and that the altered geochemistry, in turn, influences the selection of microorganisms proliferating in the habitat. However, while microbial activity may often be limited by the availability of electron donors in uncontaminated aquifer systems, this is rarely the case with landfills. Sections in this chapter provide investigators with a greater understanding of the experimental approaches needed to study the microbiology of the terrestrial subsurface and an appreciation of interpretational limits imposed by the existing methodologies. The hope is that further study of subsurface microorganisms will provide insights into the process of microbial evolution and possibly into the origins of life itself.

Book chapter↗

A new biogeographically disjunct giant gecko ( Gehyra : Gekkonidae: Reptilia) from the East Melanesian Islands

The East Melanesian Islands have been a focal area for research into island biogeography and community ecology. However, previously undescribed and biogeographically significant new species endemic to this region continue to be discovered. Here we describe a phylogenetically distinct (~20% divergence at the mitochondrial ND2 gene) and biogeographically disjunct new species of gecko in the genus Gehyra , from the Admiralty and St Matthias Islands. Gehyra rohan sp. nov. can be distinguished from all congeners by the combination of its very large size, ring of bright orange scales around the eye, moderate degree of lateral folding on the limbs and body, and aspects of head, body and tail scalation. Molecular data indicate mid to late Miocene divergence of the new species from nearest relatives occurring nearly 2000 kilometres away in Vanuatu and Fiji. Large Gehyra have not been recorded on the intervening large islands of the Bismark Archipelago (New Britain and New Ireland) and the Solomon Islands, suggesting this dispersal pre-dated the current configuration of these islands, extinction in intervening regions, or potentially elements of both. Conversely, low genetic divergence between disjunct samples on Manus and Mussau implies recent overseas dispersal via either natural or anthropogenic means.

Zootaxa↗

Comparing and improving methods for reconstructing peatland water-table depth from testate amoebae

Proxies that use changes in the composition of ecological communities to reconstruct temporal changes in an environmental covariate are commonly used in paleoclimatology and paleolimnology. Existing methods, such as weighted averaging and modern analog technique, relate compositional data to the covariate in very simple ways, and different methods are seldom compared systematically. We present a new Bayesian model that better represents the underlying data and the complexity in the relationships between species’ abundances and a paleoenvironmental covariate. Using testate amoeba-based reconstructions of water-table depth as a test case, we systematically compare new and existing models in a cross-validation experiment on a large training dataset from North America. We then apply the different models to a new 7500-year record of testate amoeba assemblages from Caribou Bog in Maine and compare the resulting water-table depth reconstructions. We find that Bayesian models represent an improvement over existing methods in three key ways: more complete use of the underlying compositional data, full and meaningful treatment of uncertainty, and clear paths toward methodological improvements. Furthermore, we highlight how developing and systematically comparing methods leads to an improved understanding of the proxy system. This paper focuses on testate amoebae and water-table depth, but the framework and ideas are widely applicable to other proxies based on compositional data.

Continental United States and Alaska↗

Estimating species richness: The importance of heterogeneity in species detectability

Estimating species richness (i.e., the actual number of species present in a given area) is a basic objective of many field studies carried out in community ecology and is also of crucial concern when dealing with the conservation and management of biodiversity. In most studies, the total number of species recorded in an area at a given time is taken as a measure of species richness. Here we use a capture–recapture approach to species richness estimation with North American Breeding Bird Survey (BBS) data in order to estimate species detectability and thus gain insight about its importance. In particular, competing models making different assumptions about species detectability are available. We carried out analyses on all survey routes of four states, Arizona, Maryland, North Dakota, and Wisconsin, in two years, 1970 and 1990. These states were chosen to provide contrasting habitats, bird species composition, and survey quality. We investigated the effect of state, year, and observer ability on the proportions of different models selected, and on estimates of detectability and species richness. Our results indicate that model M h , which assumes heterogeneous detection probability among species, is frequently appropriate for estimating species richness from BBS data. Species detectability varied among states and was higher for the more skilled observers. These results emphasize the need to take into account potential heterogeneities in detectability among species in studies of factors affecting species richness.

Ecology↗