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Pyrethroid insecticide concentrations and toxicity in streambed sediments and loads in surface waters of the San Joaquin Valley, California, USA

Pyrethroid insecticide use in California, USA, is growing, and there is a need to understand the fate of these compounds in the environment. Concentrations and toxicity were assessed in streambed sediment of the San Joaquin Valley of California, one of the most productive agricultural regions of the United States. Concentrations were also measured in the suspended sediment associated with irrigation or storm‐water runoff, and mass loads during storms were calculated. Western valley streambed sediments were frequently toxic to the amphipod, Hyalella azteca , with most of the toxicity attributable to bifenthrin and cyhalothrin. Up to 100% mortality was observed in some locations with concentrations of some pyrethroids up to 20 ng/g. The western San Joaquin Valley streams are mostly small watersheds with clay soils, and sediment‐laden irrigation runoff transports pyrethroid insecticides throughout the growing season. In contrast, eastern tributaries and the San Joaquin River had low bed sediment concentrations (<1 ng/g) and little or no toxicity because of the preponderance of sandy soils and sediments. Bifenthrin, cyhalothrin, and permethrin were the most frequently detected pyrethroids in irrigation and storm water runoff. Esfenvalerate, fenpropathrin, and resmethrin were also detected. All sampled streams contributed to the insecticide load of the San Joaquin River during storms, but some compounds detected in the smaller creeks were not detected in the San Joaquin River. The two smallest streams, Ingram and Hospital Creeks, which had high sediment toxicity during the irrigation season, accounted for less than 5% of the total discharge of the San Joaquin River during storm conditions, and as a result their contribution to the pyrethroid mass load of the larger river was minimal.

California

Contaminants without borders: A regional assessment of the Colorado River Delta ecosystem

The Colorado River Delta Region (CRDR) is comprised of large agricultural areas in the U.S. (Imperial and Yuma districts) and Mexico (Mexicali and San Luis districts), the Salton Sea, and the Lower Colorado River from southern Arizona to the Gulf of California (Valdés-Casillas et al., 1998). Before agricultural development, the lower delta comprised large riparian and wetland areas (Sykes, 1937; Glenn et al., 1999). Currently, most water from the Colorado River below Imperial Dam is used for irrigation in California and Mexico, and only remnants of the former CRDR wetlands remain. However, the Cienega de Santa Clara and the Rio Hardy wetlands (Figure 111.1) provide important habitat for many resident and migratory birds, including endangered species such as the desert pupfish (scientific names are provided in Table 111.1) and the Yuma clapper rail (Abarca et al., 1993; Mellink et al., 1997). Detailed descriptions of the CRDR and its wetlands are provided elsewhere (Sykes, 1937; Glenn et al., 1995; 1999; Friederici, 1998; Valdés-Casillas et al., 1998).

California

Trends in the sediment yield of the Sacramento River, California, 1957-2001

Human activities within a watershed, such as agriculture, urbanization, and dam building, may affect the sediment yield from the watershed. Because the equilibrium geomorphic form of an estuary is dependent in part on the sediment supply from the watershed, anthropogenic activities within the watershed have the potential to affect estuary geomorphology. The Sacramento River drains the northern half of California&rsquo;s Central Valley and is the primary source of sediment to San Francisco Bay. In this paper, it is shown that the delivery of suspended-sediment from the Sacramento River to San Francisco Bay has decreased by about one-half during the period 1957 to 2001. Many factors may be contributing to the trend in sediment yield, including the depletion of erodible sediment from hydraulic mining in the late 1800s, trapping of sediment in reservoirs, riverbank protection, altered land-uses (such as agriculture, grazing, urbanization, and logging), and levees. This finding has implications for planned tidal wetland restoration activities around San Francisco Bay, where an adequate sediment supply will be needed to build subsided areas to elevations typical of tidal wetlands as well as to keep pace with projected sea-level rise. In a broader context, the study underscores the need to address anthropogenic impacts on watershed sediment yield when considering actions such as restoration within downstream depositional areas.

California

Ecoregions of California

Ecoregions denote areas of general similarity in ecosystems and in the type, quality, and quantity of environmental resources. They are designed to serve as a spatial framework for the research, assessment, management, and monitoring of ecosystems and ecosystem components. By recognizing the spatial differences in the capacities and potentials of ecosystems, ecoregions stratify the environment by its probable response to disturbance (Bryce and others, 1999). These general purpose regions are critical for structuring and implementing ecosystem management strategies across Federal agencies, State agencies, and nongovernment organizations that are responsible for different types of resources in the same geographical areas (Omernik and others, 2000). The approach used to compile this map is based on the premise that ecological regions are hierarchical and can be identified through the analysis of the spatial patterns and the composition of biotic and abiotic phenomena that affect or reflect differences in ecosystem quality and integrity (Wiken, 1986; Omernik, 1987, 1995). These phenomena include geology, physiography, vegetation, climate, soils, land use, wildlife, and hydrology. The relative importance of each characteristic varies from one ecological region to another regardless of the hierarchical level. A Roman numeral hierarchical scheme has been adopted for different levels of ecological regions. Level I is the coarsest level, dividing North America into 15 ecological regions. Level II divides the continent into 50 regions (Commission for Environmental Cooperation Working Group, 1997, map revised 2006). At level III, the continental United States contains 105 ecoregions and the conterminous United States has 85 ecoregions (U.S. Environmental Protection Agency, 2013). Level IV, depicted here for California, is a further refinement of level III ecoregions. Explanations of the methods used to define these ecoregions are given in Omernik (1995), Omernik and others (2000), and Omernik and Griffith (2014). California has great ecological and biological diversity. The State contains offshore islands and coastal lowlands, large alluvial valleys, forested mountain ranges, deserts, and various aquatic habitats. There are 13 level III ecoregions and 177 level IV ecoregions in California and most continue into ecologically similar parts of adjacent States of the United States or Mexico (Bryce and others, 2003; Thorson and others, 2003; Griffith and others, 2014). The California ecoregion map was compiled at a scale of 1:250,000. It revises and subdivides an earlier national ecoregion map that was originally compiled at a smaller scale (Omernik, 1987; U.S. Environmental Protection Agency, 2013). This poster is the result of a collaborative project primarily between U.S. Environmental Protection Agency (USEPA) Region IX, USEPA National Health and Environmental Effects Research Laboratory (Corvallis, Oregon), California Department of Fish and Wildlife (DFW), U.S. Department of Agriculture (USDA)–Natural Resources Conservation Service (NRCS), U.S. Department of the Interior–Geological Survey (USGS), and other State of California agencies and universities. The project is associated with interagency efforts to develop a common framework of ecological regions (McMahon and others, 2001). Reaching that objective requires recognition of the differences in the conceptual approaches and mapping methodologies applied to develop the most common ecoregion-type frameworks, including those developed by the USDA–Forest Service (Bailey and others, 1994; Miles and Goudy, 1997; Cleland and others, 2007), the USEPA (Omernik 1987, 1995), and the NRCS (U.S. Department of Agriculture–Soil Conservation Service, 1981; U.S. Department of Agriculture–Natural Resources Conservation Service, 2006). As each of these frameworks is further refined, their differences are becoming less discernible. Regional collaborative projects such as this one in California, where some agreement has been reached among multiple resource-management agencies, are a step toward attaining consensus and consistency in ecoregion frameworks for the entire nation.

California

Appendix B—investigations of underground‐water problems in California, New Mexico, and Oregon

Investigations by the California Department of Public Works, Division of Water Resources (based on written communication from Harold Conkling, Deputy State Engineer)—the Division of Water Resources, California Department of Public Works, has in the past year conducted investigations of ground‐water problems in the great central valley of the State (California Trough); in the Salinas and Santa Clara Valleys of the central part of the State; also in the South Coastal Basin and in Ventura County, in southern California. In these investigations the Bureau of Agricultural Engineering of the United States Department of Agriculture, the Geological Survey of the United States Department of the Interior, and many local agencies have cooperated. In large part, the activities of the past year are continuations of investigations summarized in an earlier statement (A. M. Piper, Investigations of underground‐water problems in Arizona, California, New Mexico, and Oregon, National Research Council, Trans. Amer. Geophys. Union, 13th annual meeting, 308–309, 1932). Progress in 1932–35 is summarized in the following paragraphs.

California, New Mexico, Oregon

Evaluation of a monitoring program for assessing the effects of management practices on the quantity and quality of drainwater from the Panoche Water District, western San Joaquin Valley, California

An evaluation was made of an existing monitoring program in the Panoche Water District for 1986-93. The Panoche Water District is an agricultural area located in the western San Joaquin Valley of California. Because irrigation drainage from this area has high concentrations of dissolved solids and selenium, management strategies have been developed to improve the quality of drainwater discharge. The purpose of the Panoche Water District's monitoring program is to assess the effects of water- and land-use practices on local ground water and drain flow from the district. Drainflow from the district consists of the discharge from 50 separate on-farm underground tile-drainage systems. The Panoche Water District maintains information on water deliveries, planned and actual crop types, and planned and actual acreages planted each year. In addition, the water district monitors ground-water and drainage-system discharges using a variety of data-collection methods. A total of 62 observation well sites are used to monitor ground-water level and quality. A total of 42 sites were monitored for drainflow quantity, and drain flow quality samples were collected from the outlets of each of the 50 drainage systems. However, these data were collected inconsistently and (or) intermittently during the period studied. All data obtained from the water district were compiled and stored in a geographic information system database. Water delivered for irrigation by the Panoche Water District is a mix of imported water and local ground water pumped directly into delivery canals. Although delivered water is a mix, information on the proportion of water from the two sources is not reported. Also, individual growers pump directly to their crops unknown quantities of ground water, the total of which could be greater than 60 percent of total applications during years when water district deliveries are greatly reduced (for example, the years during and following a drought). To evaluate the effects of irrigation on ground-water and drainflow quality, data on the combined chemical characteristics and the volume of water applied to crops are needed as part of the district's monitoring program. For example, without these data, this study could estimate only the effects of irrigation on ground-water recharge for 1986 (60.4 106 m3/y), 1987 (74.2 106 m3/y), and 1988 (56.0 106 m3/y) in the Panoche Water District water years when the amount of ground water pumped by individual growers was probably small. Water-level data show a significant decline of the water table in the upslope, undrained parts of the study area, and little or no significant change in the down slope, drained parts of the study area. Pumping from productions wells, most of which are located in the upslope part of the study area, may have contributed to the decline of the water table in the upslope area. The quantities of drainflow, dissolved solids, and selenium discharged from the study area decreased during the study period. However, drainflow, dissolved solids, and selenium discharged from individual on-farm drainage systems did not decrease. These data also illustrate the need for consistent and regular monitoring of the factors that affect drainage in the western San Joaquin Valley.

Open-File Report

Dissolved pesticide concentrations detected in storm-water runoff at selected sites in the San Joaquin River basin, California, 2000-2001

As part of a collaborative study involving the United States Geological Survey Toxics Substances Hydrology Project (Toxics Project) and the University of California, Davis, Bodega Marine Laboratory (BML), water samples were collected at three sites within the San Joaquin River Basin of California and analyzed for dissolved pesticides. Samples were collected during, and immediately after, the first significant rainfall (greater than 0.5 inch per day) following the local application of dormant spray, organophosphate insecticides during the winters of 2000 and 2001. All samples were collected in conjunction with fish-caging experiments conducted by BML researchers. Sites included two locations potentially affected by runoff of agricultural chemicals (San Joaquin River near Vernalis, California, and Orestimba Creek at River Road near Crows Landing, California, and one control site located upstream of pesticide input (Orestimba Creek at Orestimba Creek Road near Newman, California). During these experiments, fish were placed in cages and exposed to storm runoff for up to ten days. Following exposure, the fish were examined for acetylcholinesterase concentrations and overall genetic damage. Water samples were collected throughout the rising limb of the stream hydrograph at each site for later pesticide analysis. Concentrations of selected pesticides were measured in filtered water samples using solid-phase extraction (SPE) and gas chromatography-mass spectrometry (GC/MS) at the U.S. Geological Survey organic chemistry laboratory in Sacramento, California. Results of these analyses are presented.

Open-File Report

Periphyton and Macroinvertebrate Communities at Five Sites in the San Joaquin River Basin, California, during June and September, 2001

The effects of agriculture, particularly from the use of pesticides, on aquatic ecosystems in the San Joaquin River Basin concern many aquatic resource managers, water quality managers, and water users. A total of five sites were sampled once in June 2001 and once in September 2001 to document the periphyton (attached algae) community, the benthic macroinvertebrate (insects and non-insects) community, and stream habitat conditions. The purposes of the study were to document existing conditions and, to the extent possible, relate the periphyton and macroinvertebrate community condition to environmental conditions. A total of 161 taxa of algae were collected during the study. Samples from the richest targeted habitat, woody debris, included 109 taxa. In both the June and September samples, greater than 95 percent of the taxa collected were diatoms. Cluster analysis and detrended correspondence analysis of sample data showed that Orestimba Creek had a very different periphyton community than the Merced and Tuolumne Rivers. Salt Slough and the San Joaquin River had community compositions that were intermediate between the two extremes. A total of 126 taxa of macroinvertebrates were collected during the study. Samples from woody debris included 59 taxa. The samples included a variety of both insect and non-insect taxa. Cluster analysis and detrended correspondence analysis of sample data showed that Orestimba Creek was very different from the Merced River and Tuolumne River, similar to the results for periphyton. Orestimba Creek was dominated by non-insects, while the Merced and Tuolumne Rivers were dominated by insects. Salt Slough was more similar to Orestimba Creek because of the abundance of non-insects. The San Joaquin River was more similar to the Merced and Tuolumne Rivers. There was no evidence of major differences between June and September samples for either the periphyton or macroinvertebrate communities. Specific conductance (a surrogate for salinity) and several habitat measures were associated with differences in the periphyton and macroinvertebrate communities at the five sites. Additional sampling at more sites over a longer period of time will likely be necessary before the effects of water quality and habitat conditions on aquatic communities are fully understood in the San Joaquin River Basin.

Scientific Investigations Report

Migration stopover ecology of Cinnamon Teal in western North America

Identifying migration routes and fall stopover sites of Cinnamon Teal ( Spatula cyanoptera septentrionalium) can provide a spatial guide to management and conservation efforts, and address vulnerabilities in wetland networks that support migratory waterbirds. Using high spatiotemporal resolution GPS-GSM transmitters, we analyzed 61 fall migration tracks across western North America during our three-year study (2017–2019). We marked Cinnamon Teal primarily during spring/summer in important breeding and molting regions across seven states (California, Oregon, Washington, Idaho, Utah, Colorado, and Nevada). We assessed fall migration routes and timing, detected 186 fall stopover sites, and identified specific North American ecoregions where sites were located. We classified underlying land cover for each stopover site and measured habitat selection for 12 land cover types within each ecoregion. Cinnamon Teal selected a variety of flooded habitats including natural, riparian, tidal, and managed wetlands; wet agriculture (including irrigation ditches, flooded fields, and stock ponds); wastewater sites; and golf and urban ponds. Wet agriculture was the most used habitat type (29.8% of stopover locations), and over 72% of stopover locations were on private land. Relatively scarce habitats such as wastewater ponds, tidal marsh, and golf and urban ponds were highly selected in specific ecoregions. In contrast, dry non-habitat across all ecoregions, and dry agriculture in the Cold Deserts and Mediterranean California ecoregions, was consistently avoided. Resources used by Cinnamon Teal often reflected wetland availability across the west and emphasize their adaptability to dynamic resource conditions in arid landscapes. Our results provide much needed information on spatial and temporal resource use by Cinnamon Teal during migration and indicate important wetland habitats for migrating waterfowl in the western United States.

Ecology and Evolution

Automated Cropland Classification Algorithm (ACCA) for California using multi-sensor remote sensing

Increasing pressure to feed the growing population with scarce water resources requires accurate and routine cropland mapping. This paper develops and implements a rule-based automated cropland classification algorithm (ACCA) using multi-sensor remote sensing data. Pixel-by-pixel accuracy assessments showed that ACCA produced an overall accuracy of 96 percent (K hat = 0.8) when tested using independent data layers. Furthermore, ACCA-generated county cropland areas showed high agreement (R-square values 0.94) when compared with three independent data sources: (a) US Department of Agriculture (USDA) cropland data layer derived cropland areas, (b) county specific crop acreage data from the Farm Service Agency, and (c) the Census of Agriculture data for the 58 counties in California. Our results demonstrate the ability of ACCA to generate cropland extent and areas over space and time, in an automated fashion with high degree of accuracies year after year, greatly contributing to food and water security analysis and decision making.

California

Three-dimensional hydrogeologic framework model of the Russian River watershed, California

The Russian River watershed is in northern Sonoma County and southern Mendocino County, California, in the northern part of the California Coast Ranges. The Russian River serves as a supply for agricultural irrigation and for municipal, domestic, and commercial uses. Through a cooperative agreement with the California State Water Resources Control Board and Sonoma County Water Agency, the U.S. Geological Survey has completed studies to better understand the hydrogeologic system and develop numerical hydrologic modeling tools to evaluate and aid in managing groundwater resources. This report focuses on the development of a digital three-dimensional hydrogeologic framework model of the Russian River watershed for use in groundwater resource assessment and numerical models. The digital three-dimensional hydrogeologic framework model of the Russian River watershed portrays the altitude, thickness, and extent of five hydrogeologic units. These five hydrogeologic units include (1) a basement unit, (2) the Sonoma Volcanics, (3) a consolidated sedimentary rock unit, (4) an unconsolidated sediment unit, and (5) channel alluvium. Model input data were compiled from published geologic maps, interpreted well data, and a model of the top of basement derived from gravity data. These data were used to construct surfaces that represent the upper and lower subsurface boundaries of each hydrogeologic unit. Top surfaces were created for the five hydrogeologic units and then stacked in three dimensions to create a solid-volume digital model. The digital three-dimensional hydrogeologic framework model described in this report and the corresponding data represent the generalized geometry of the subsurface geologic units; the model reproduces the input geologic data with reasonable accuracy and is consistent with previously published subsurface conceptualizations of the region. The model indicates the overall geometry of the basement within the watershed and the spatial extent, altitude, and thickness of the basin-filling units. The hydrogeologic framework model is at a scale and resolution appropriate for use as the foundation for a numerical hydrologic model of the study area.

California

Potential depletion of surface water in the Colorado River and agricultural drains by groundwater pumping in the Parker-Palo Verde-Cibola area, Arizona and California

Water use along the lower Colorado River is allocated as “consumptive use,” which is defined to be the amount of water diverted from the river minus the amount that returns to the river. Diversions of water from the river include surface water in canals and water removed from the river by pumping wells in the aquifer connected to the river. A complication in accounting for water pumped by wells occurs if the pumping depletes water in drains and reduces measured return flow in those drains. In that case, consumptive use of water pumped by the wells is accounted for in the reduction of measured return flow. A method is needed to understand where groundwater pumping will deplete water in the river and where it will deplete water in drains. To provide a basis for future accounting for pumped groundwater in the Parker-Palo Verde-Cibola area, a superposition model was constructed. The model consists of three layers of finite-difference cells that cover most of the aquifer in the study area. The model was run repeatedly with each run having a pumping well in a different model cell. The source of pumped water that is depletion of the river, expressed as a fraction of the pumping rate, was computed for all active cells in model layer 1, and maps were constructed to understand where groundwater pumping depletes the river and where it depletes drains. The model results indicate that if one or more drains exist between a pumping well location and the river, nearly all of the depletion will be from drains, and little or no depletion will come from the Colorado River. Results also show that if a well pumps on a side of the river with no drains in the immediate area, depletion will come from the Colorado River. Finally, if a well pumps between the river and drains that parallel the river, a fraction of the pumping will come from the river and the rest will come from the drains. Model results presented in this report may be considered in development or refinement of strategies for accounting for groundwater pumping in the river aquifer connected to the Colorado River in the study area.

Arizona;California

Wetland management and rice farming strategies to decrease methylmercury bioaccumulation and loads from the Cosumnes River Preserve, California

We evaluated mercury (Hg) concentrations in caged fish (deployed for 30 days) and water from agricultural wetland (rice fields), managed wetland, slough, and river habitats in the Cosumnes River Preserve, California. We also implemented experimental hydrological regimes on managed wetlands and post-harvest rice straw management techniques on rice fields in order to evaluate potential Best Management Practices to decrease methylmercury bioaccumulation within wetlands and loads to the Sacramento-San Joaquin River Delta. Total Hg concentrations in caged fish were twice as high in rice fields as in managed wetland, slough, or riverine habitats, including seasonal managed wetlands subjected to identical hydrological regimes. Caged fish Hg concentrations also differed among managed wetland treatments and post-harvest rice straw treatments. Specifically, Hg concentrations in caged fish decreased from inlets to outlets in seasonal managed wetlands with either a single (fall-only) or dual (fall and spring) drawdown and flood-up events, whereas Hg concentrations increased slightly from inlets to outlets in permanent managed wetlands. In rice fields, experimental post-harvest straw management did not decrease Hg concentrations in caged fish. In fact, in fields in which rice straw was chopped and either disked into the soil or baled and removed from the fields, fish Hg concentrations increased from inlets to outlets and were higher than Hg concentrations in fish from rice fields subjected to the more standard post-harvest practice of simply chopping rice straw prior to fall flood-up. Finally, aqueous methylmercury (MeHg) concentrations and export were highly variable, and seasonal trends in particular were often opposite to those of caged fish. Aqueous MeHg concentrations and loads were substantially higher in winter than in summer, whereas caged fish Hg concentrations were relatively low in winter and substantially higher in summer. Together, our results highlight the importance of habitat, seasonal processes, and wetland management practices on Hg cycling and ecological risk in aquatic ecosystems.

California

Ghost of habitat past: historic habitat affects the contemporary distribution of giant garter snakes in a modified landscape.

Historic habitat conditions can affect contemporary communities and populations, but most studies of historic habitat are based on the reduction in habitat extent or connectivity. Little is known about the effects of historic habitat on contemporary species distributions when historic habitat has been nearly completely removed, but species persist in a highly altered landscape. More than 93% of the historic wetlands in the Central Valley of California, USA, have been drained and converted to agricultural and other uses, but agricultural wetlands, such as rice and its supporting infrastructure of canals, allow some species to persist. Little is known about the distribution of giant garter snakes Thamnophis gigas , a rare aquatic snake species inhabiting this predominantly agricultural landscape, or the variables that affect where this species occurs. We used occupancy modeling to examine the distribution of giant garter snakes at the landscape scale in the Sacramento Valley (northern portion of the Central Valley) of California, with an emphasis on the relative strength of historic and contemporary variables (landscape-scale habitat, local microhabitat, vegetation composition and relative prey counts) for predicting giant garter snake occurrence. Proximity to historic marsh best explained variation in the probability of occurrence of giant garter snakes at the landscape scale, with greater probability of occurrence near historic marsh. We suspect that the importance of distance to historic marsh represents dispersal limitations of giant garter snakes. These results suggest that preserving and restoring areas near historic marsh, and minimizing activities that reduce the extent of marsh or marsh-like (e.g. rice agriculture, canal) habitats near historic marsh may be advantageous to giant garter snakes.

Animal Conservation