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At least 145 records · Page 8Linked to original sources
USGS2019

Evaluating consumptive and nonconsumptive predator effects on prey density using field times series data

Determining the degree to which predation affects prey abundance in natural communities constitutes a key goal of ecological research. Predators can affect prey through both consumptive effects (CEs) and nonconsumptive effects (NCEs), although the contributions of each mechanism to the density of prey populations remain largely hypothetical in most systems. Common statistical methods applied to time series data cannot elucidate the mechanisms responsible for hypothesized predator effects on prey density (e.g., differentiate CEs from NCEs), nor provide parameters for predictive models. State space models (SSMs) applied to time series data offer a way to meet these goals. Here, we employ SSMs to assess effects of an invasive predatory zooplankter, Bythotrephes longimanus, on an important prey species, Daphnia mendotae, in Lake Michigan. We fit mechanistic models in a SSM framework to seasonal time series (1994-2012) using a recently developed, maximum likelihood-based optimization method, iterated filtering, which can overcome challenges in ecological data (e.g. nonlinearities, measurement error, and irregular sampling intervals). Our results indicate that B. longimanus strongly influences D. mendotae dynamics, with mean annual peak densities of B. longimanus observed in Lake Michigan estimated to cause a 61% reduction in D. mendotae population growth rate and a 59% reduction in peak biomass density. Further, the observed B. longimanus effect is most consistent with an NCE via reduced birth rates. The SSM approach also provided estimates for key biological parameters (e.g., demographic rates) and the contribution of dynamic stochasticity and measurement error. Our study therefore provides evidence derived directly from survey data that the invasive zooplankter B. longimanus is affecting zooplankton demographics and offer parameter estimates needed to inform predictive models that explore the effect of B. longimanus under different scenarios such as climate change.

Ecology↗
USGS2005

A direct immunoassay for detecting diatoms in groundwater as an indicator of the direct influence of surface water

Groundwater under the direct influence of surface water (GWUDISW) is of concern in communities where growing public demand on groundwater resources has resulted in increased withdrawals and hydraulic stress near surface water bodies. Under these conditions, contaminants such as methyl-tert butyl ether (MTBE) and biological materials have been detected in domestic wells. Other contaminants and pathogens associated with surface water are not routinely tested for in groundwater-supplied systems. To address the need for methods to easily identify potentially vulnerable supplies, a direct immunoassay for the quantitative detection of diatoms in raw water samples was developed as a measure of surface water influence on groundwater. Cell wall preparations from Nitzschia palea Kützing, a freshwater diatom found throughout North America, were used to produce a polyclonal antibody that was applied in a direct enzyme-linked immunosorbent assay (ELISA) developed to detect the presence of N. palea cell wall components. The direct immunoassay allows detection at 500 cells L −1 , a level similar to diatom concentrations observed in samples of groundwater collected near the test site. This investigation was the first attempt to utilize an ELISA as an indicator of surface water influence on groundwater. Further research is needed to develop more specific diatom-based monoclonal antibodies, determine cross-reactivity, and optimize sample processing and ELISA procedures for development of a standardized method.

Journal of Applied Phycology↗
USGS2015

Preliminary methodology to assess the national and regional impact of U.S. wind energy development on birds and bats

The U.S. Geological Survey has developed a methodology to assess the impacts of wind energy development on wildlife; it is a probabilistic, quantitative assessment methodology that can communicate to decision makers and the public the magnitude of these effects on species populations. The methodology is currently applicable to birds and bats, focuses primarily on the effects of collisions, and can be applied to any species that breeds in, migrates through, or otherwise uses any part of the United States. The methodology is intended to assess species at the national scale and is fundamentally different from existing methods focusing on impacts at individual facilities. Publicly available fatality information, population estimates, species range maps, turbine location data, biological characteristics, and generic population models are used to generate both a ranked list of species based on relative risk as well as quantitative measures of the magnitude of the effect on species' population trend and size. Three metrics are combined to determine direct and indirect relative risk to populations. A generic population model is used to estimate the expected change in population trend and includes additive mortality from collisions with wind turbines. Lastly, the methodology uses observed fatalities and an estimate of potential biological removal to assess the risk of a decline in population size. Data for six bird species have been processed through the entire methodology as a test case, and the results are presented in this report. Components of the methodology are based on simplifying assumptions and require information that, for many species, may be sparse or unreliable. These assumptions are presented in the report and should be carefully considered when using output from the methodology. In addition, this methodology can be used to recommend species for more intensive demographic modeling or highlight those species that may not require any additional protection because effects of wind energy development on their populations are projected to be small.

Scientific Investigations Report↗
USGS2016

Annual grass invasion in sagebrush-steppe: The relative importance of climate, soil properties and biotic interactions

The invasion by winter-annual grasses (AGs) such as Bromus tectorum into sagebrush steppe throughout the western USA is a classic example of a biological invasion with multiple, interacting climate, soil and biotic factors driving the invasion, although few studies have examined all components together. Across a 6000-km 2 area of the northern Great Basin, we conducted a field assessment of 100 climate, soil, and biotic (functional group abundances, diversity) factors at each of 90 sites that spanned an invasion gradient ranging from 0 to 100 % AG cover. We first determined which biotic and abiotic factors had the strongest correlative relationships with AGs and each resident functional group. We then used regression and structural equation modeling to explore how multiple ecological factors interact to influence AG abundance. Among biotic interactions, we observed negative relationships between AGs and biodiversity, perennial grass cover, resident species richness, biological soil crust cover and shrub density, whereas perennial and annual forb cover, tree cover and soil microbial biomass had no direct linkage to AG. Among abiotic factors, AG cover was strongly related to climate (increasing cover with increasing temperature and aridity), but had weak relationships with soil factors. Our structural equation model showed negative effects of perennial grasses and biodiversity on AG cover while integrating the negative effects of warmer climate and positive influence of belowground processes on resident functional groups. Our findings illustrate the relative importance of biotic interactions and climate on invasive abundance, while soil properties appear to have stronger relationships with resident biota than with invasives.

Oregon↗
USGS2019

Replicated landscape genomics identifies evidence of local adaptation to urbanization in wood frogs

Native species that persist in urban environments may benefit from local adaptation to novel selection factors. We used double-digest restriction-side associated DNA (RAD) sequencing to evaluate shifts in genome-wide genetic diversity and investigate the presence of parallel evolution associated with urban-specific selection factors in wood frogs ( Lithobates sylvaticus ). Our replicated paired study design involved 12 individuals from each of 4 rural and urban populations to improve our confidence that detected signals of selection are indeed associated with urbanization. Genetic diversity measures were less for urban populations; however, the effect size was small, suggesting little biological consequence. Using an F ST outlier approach, we identified 37 of 8344 genotyped single nucleotide polymorphisms with consistent evidence of directional selection across replicates. A genome-wide association study analysis detected modest support for an association between environment type and 12 of the 37 F ST outlier loci. Discriminant analysis of principal components using the 37 F ST outlier loci produced correct reassignment for 87.5% of rural samples and 93.8% of urban samples. Eighteen of the 37 F ST outlier loci mapped to the American bullfrog ( Rana [Lithobates] catesbeiana ) genome, although none were in coding regions. This evidence of parallel evolution to urban environments provides a powerful example of the ability of urban landscapes to direct evolutionary processes.

Maine↗
USGS2016

At the nexus of fire, water and society

The societal risks of water scarcity and water-quality impairment have received considerable attention, evidenced by recent analyses of these topics by the 2030 Water Resources Group, the United Nations and the World Economic Forum. What are the effects of fire on the predicted water scarcity and declines in water quality? Drinking water supplies for humans, the emphasis of this exploration, are derived from several land cover types, including forests, grasslands and peatlands, which are vulnerable to fire. In the last two decades, fires have affected the water supply catchments of Denver (CO) and other southwestern US cities, and four major Australian cities including Sydney, Canberra, Adelaide and Melbourne. In the same time period, several, though not all, national, regional and global water assessments have included fire in evaluations of the risks that affect water supplies. The objective of this discussion is to explore the nexus of fire, water and society with the hope that a more explicit understanding of fire effects on water supplies will encourage the incorporation of fire into future assessments of water supplies, into the pyrogeography conceptual framework and into planning efforts directed at water resiliency.

Philosophical Transactions of the Royal Society B:↗
USGS2002

Geologic map and digital database of the Pinto Mountain 7.5 minute quadrangle, Riverside County, California

The geologic map and digital database of the Pinto Mountain quadrangle are products of a regional geologic mapping effort undertaken in the eastern Transverse Ranges in and around Joshua Tree National Park. This investigation, part of the Southern California Areal Mapping Project (SCAMP), is conducted in cooperation with the California Geologic Survey and the National Park Service. In line with the goals of the National Cooperative Geologic Mapping Program (NCGMP), mapping of the Pinto Mountain and other quadrangles has been directed toward generating a multipurpose digital geologic map database that is applicable to land-related investigations in the earth and biological sciences. This mapping is conducted to further understanding of bedrock geology and surficial processes in the region and to document evidence for seismotectonic activity in the eastern Transverse Ranges. It is also intended to serve as a base layer suitable for ecosystem and mineral resource assessment and for building a hydrogeologic framework for Pinto Basin. Initial investigations span Pinto Basin from the Hexie and Eagle Mountains northward into the Pinto Mountains. Quadrangles mapped include the Conejo Well 7.5-minute quadrangle (Powell, 2001a), the Porcupine Wash 7.5-minute quadrangle (Powell, 2001b), the Pinto Mountain 7.5-minute quadrangle, and the San Bernardino Wash 7.5-minute quadrangle (Powell, 2002). Parts of the Pinto Mountain quadrangle had been mapped previously at a variety of scales (Weir, and Bader, 1963; Hope, 1966, 1969; Jennings, 1967; Powell, 1981, 1993).

California↗
USGS2002

Geologic map and digital database of the San Bernardino Wash 7.5 minute quadrangle, Riverside County, California

The geologic map and digital database of the San Bernardino Wash quadrangle are products of a regional geologic mapping effort undertaken in the eastern Transverse Ranges in and around Joshua Tree National Park. This investigation, part of the Southern California Areal Mapping Project (SCAMP), is conducted in cooperation with the California Geologic Survey and the National Park Service. In line with the goals of the National Cooperative Geologic Mapping Program (NCGMP), mapping of the San Bernardino Wash and other quadrangles has been directed toward generating a multipurpose digital geologic map database that is applicable to land-related investigations in the earth and biological sciences. This mapping is conducted to further understanding of bedrock geology and surficial processes in the region and to document evidence for seismotectonic activity in the eastern Transverse Ranges. It is also intended to serve as a base layer suitable for ecosystem and mineral resource assessment and for building a hydrogeologic framework for Pinto Basin. Initial investigations span Pinto Basin from the Hexie and Eagle Mountains northward into the Pinto Mountains (see fig. 1). Quadrangles mapped include the Conejo Well 7.5-minute quadrangle (Powell, 2001a), the Porcupine Wash 7.5-minute quadrangle (Powell, 2001b), the Pinto Mountain 7.5-minute quadrangle (Powell, 2002), and the San Bernardino Wash 7.5-minute quadrangle. Parts of the San Bernardino Wash quadrangle had been mapped previously at a variety of scales (Weir, and Bader, 1963; Hope, 1966, 1969; Jennings, 1967; Powell, 1981, 1993).

California↗
USGS2020

The impact of lime additions on mercury dynamics in stream chemistry and macroinvertebrates: A comparison of watershed and direct stream addition management strategies

Acid deposition has declined across eastern North America and northern Europe due to reduced emissions of sulfur and nitrogen oxides. Ecosystem recovery has been slow with limited improvement in surface water chemistry. Delayed recovery has encouraged acid-neutralization strategies to accelerate recovery of impaired biological communities. Lime application has been shown to increase pH and dissolved organic carbon (DOC), which could also drive increased mobilization of mercury (Hg) to surface waters. A four-year study was conducted within Honnedaga Lake’s watershed in the Adirondack region of New York to compare the effects of watershed and direct channel lime additions on Hg in stream water and macroinvertebrates. All treatments sharply increased stream pH and DOC concentrations, but large differences in the duration of impacts were apparent. The watershed treatment resulted in multi-year increases in concentrations and loads of total Hg (150%; 390%), DOC (190%; 350%) and nutrients, whereas total Hg and DOC increased for short periods (72–96 h) after channel treatments. No response of Hg in macroinvertebrates was evident following the watershed treatment, but a potential short-term and spatially constrained increase occurred after the channel treatment. Our observations indicate that both treatment approaches mobilize Hg, but that direct channel liming mobilizes considerably less than watershed liming over any period longer than a few days. During the final study year, increased methyl Hg concentrations were observed across reference and treated streams, which may reflect an extended dry period, highlighting that climate variation may also affect Hg dynamics.

New York↗
USGS2014

The response of stream periphyton to Pacific salmon: using a model to understand the role of environmental context

1. In stream ecosystems, Pacific salmon deliver subsidies of marine-derived nutrients and disturb the stream bed during spawning. The net effect of this nutrient subsidy and physical disturbance on biological communities can be hard to predict and is likely to be mediated by environmental conditions. For periphyton, empirical studies have revealed that the magnitude and direction of the response to salmon varies from one location to the next. Salmon appear to increase periphyton biomass and/or production in some contexts (a positive response), but decrease them in others (a negative response). 2. To reconcile these seemingly conflicting results, we constructed a system dynamics model that links periphyton biomass and production to salmon spawning. We used this model to explore how environmental conditions influence the periphyton response to salmon. 3. Our simulations suggest that the periphyton response to salmon is strongly mediated by both background nutrient concentrations and the proportion of the stream bed suitable for spawning. Positive periphyton responses occurred when both background nutrient concentrations were low (nutrient limiting conditions) and when little of the stream bed was suitable for spawning (because the substratum is too coarse). In contrast, negative responses occurred when nutrient concentrations were higher or a larger proportion of the bed was suitable for spawning. 4. Although periphyton biomass generally remained above or below background conditions for several months following spawning, periphyton production returned quickly to background values shortly afterwards. As a result, based upon our simulations, salmon did not greatly increase or decrease overall annual periphyton production. This suggests that any increase in production by fish or invertebrates in response to returning salmon is more likely to occur via direct consumption of salmon carcasses and/or eggs, rather than the indirect effects of greater periphyton production. 5. Overall, our simulations suggest that environmental factors need to be taken into account when considering the effects of spawning salmon on aquatic ecosystems. Our model offers researchers a framework for testing periphyton response to salmon across a range of conditions, which can be used to generate hypotheses, plan field experiments and guide data collection.

Freshwater Biology↗
USGS2003

Measurement of in vitro leucocyte mitogenesis in fish: ELISA based detection of the thymidine analogue 5'-bromo-2'-deoxyuridine

In this study we present a method for the measurement of in vitro mitogenesis in fish leucocytes that is based on the incorporation of the thymidine analogue 5′-bromo-2′-deoxyuridine (BrdU) into the DNA of replicating cells, followed by ELISA-based detection. This technique, adapted from methods developed for mammalian cells, operates on a similar biological principle to 3 H-thymidine incorporation, but circumvents the logistical and safety issues inherent with the radioactive label. Because it directly measures DNA proliferation, the assay has advantages over other colorimetric methods that may be strongly influenced by leucocyte metabolic status. Using BrdU incorporation followed by ELISA, we evaluate the responsiveness of rainbow trout ( Oncorhynchus mykiss [Walbaum]) leucocytes to the mammalian T-cell mitogen Concanavalin A (Con A) as well as the differential response of white perch ( Morone americana [Gmelin]) leucocytes to Con A and pokeweed mitogen. Specific considerations intrinsic to the assay system are discussed, including the implications of utilising enzyme-based detection.

Fish and Shellfish Immunology↗
USGS1986

Biomonitors of stream quality on agricultural areas: fish versus invertebrates

Although the utility of using either fish or benthic invertebrates as biomonitors of stream quality has been clearly shown, there is little comparative information on the usefulness of the groups in any particular situation. We compared fish to invertebrate assemblages in their ability to reflect habitat quality of sediment-impacted streams in agricultural regions of northeast Missouri, USA. Habitat quality was measured by a combination of substrate composition, riparian type, buffer strip width, and land use. Invertebrates were more sensitive to habitat differences when structural measurements, species diversity and ordination, were used. Incorporating ecological measurements, by using the Index of Biological Integrity, increased the information obtained from the fish assemblage. The differential response of the two groups was attributed to the more direct impact of sediments on invertebrate life requisites; the impact of sedimentation on fish is considered more indirect and complex, affecting feeding and reproductive mechanisms.

Environmental Management↗
USGS1991

The role of the diagnostic laboratory in fish disease control

The diagnostic laboratory is becoming increasingly important to the productivity and profitability of hatcheries, fish farms, and aquaculture stations. The basic function of the laboratory personnel is to isolate and identify viral, bacterial, protozoan, and other fish pathogens present in cultured and feral fish stocks. New, rapid and accurate methods for the detection and identification of fish disease agents based on immunological, biochemical, and physiological assays are becoming commonly used. Nearly every North American state or province and many foreign countries have fish health regulations that require inspection of stocks for certain disease agents before the fish are shipped into their areas. Decisions from the diagnostic laboratory on identification, treatment, guaranteed isolation, immunization, and disposal of fish populations affect administrative directives, hatchery placement, and national and international transportation of fish and fish products. This paper reviews concepts and describes the equipment, supplies, biologics, and media needed for the basic diagnostic laboratory. Information management, including training of staff, certification procedures, and quality control are also discussed.

Annual Review of Fish Diseases↗
USGS2023

Bottled water contaminant exposures and potential human effects

Bottled water (BW) consumption in the United States and globally has increased amidst heightened concern about environmental contaminant exposures and health risks in drinking water supplies, despite a paucity of directly comparable, environmentally-relevant contaminant exposure data for BW. This study provides insight into exposures and cumulative risks to human health from inorganic/organic/microbial contaminants in BW. Methods BW from 30 total domestic US (23) and imported (7) sources, including purified tapwater (7) and spring water (23), were analyzed for 3 field parameters, 53 inorganics, 465 organics, 14 microbial metrics, and in vitro estrogen receptor (ER) bioactivity. Health-benchmark-weighted cumulative hazard indices and ratios of organic-contaminant in vitro exposure-activity cutoffs were assessed for detected regulated and unregulated inorganic and organic contaminants. Results 48 inorganics and 45 organics were detected in sampled BW. No enforceable chemical quality standards were exceeded, but several inorganic and organic contaminants with maximum contaminant level goal(s) (MCLG) of zero (no known safe level of exposure to vulnerable sub-populations) were detected. Among these, arsenic, lead, and uranium were detected in 67 %, 17 %, and 57 % of BW, respectively, almost exclusively in spring-sourced samples not treated by advanced filtration. Organic MCLG exceedances included frequent detections of disinfection byproducts (DBP) in tapwater-sourced BW and sporadic detections of DBP and volatile organic chemicals in BW sourced from tapwater and springs. Precautionary health-based screening levels were exceeded frequently and attributed primarily to DBP in tapwater-sourced BW and co-occurring inorganic and organic contaminants in spring-sourced BW. Conclusion The results indicate that simultaneous exposures to multiple drinking-water contaminants of potential human-health concern are common in BW. Improved understandings of human exposures based on more environmentally realistic and directly comparable point-of-use exposure characterizations, like this BW study, are essential to public health because drinking water is a biological necessity and, consequently, a high-vulnerability vector for human contaminant exposures.

Environment International↗
USGS2020

Climate change effects on biodiversity, ecosystems, ecosystem services, and natural resource management in the United States

Climate change is a pervasive and growing global threat to biodiversity and ecosystems. Here, we present the most up-to-date assessment of climate change impacts on biodiversity, ecosystems, and ecosystem services in the U.S. and implications for natural resource management. We draw from the 4th National Climate Assessment to summarize observed and projected changes to ecosystems and biodiversity, explore linkages to important ecosystem services, and discuss associated challenges and opportunities for natural resource management. We find that species are responding to climate change through changes in morphology and behavior, phenology, and geographic range shifts, and these changes are mediated by plastic and evolutionary responses. Responses by species and populations, combined with direct effects of climate change on ecosystems (including more extreme events), are resulting in widespread changes in productivity, species interactions, vulnerability to biological invasions, and other emergent properties. Collectively, these impacts alter the benefits and services that natural ecosystems can provide to society. Although not all impacts are negative, even positive changes can require costly societal adjustments. Natural resource managers need proactive, flexible adaptation strategies that consider historical and future outlooks to minimize costs over the long term. Many organizations are beginning to explore these approaches, but implementation is not yet prevalent or systematic across the nation.

Science of the Total Environment↗
USGS2023

Cruise Report for NOAA Ship Nancy Foster Cruise NF-22-06

Between 9 August and 1 September, 2022, the Mesophotic and Deep Benthic (MDBC) Habitat Assessment and Evaluation (HAE) and Mapping, Ground-truthing, and Predictive Habitat Modeling (MGM) projects implemented remotely operated vehicle (ROV) dives, multibeam surveys, and conductivity, temperature, depth (CTD) operations at deep-sea sites in the northern Gulf of Mexico. The primary sites selected are a region of known deep-sea coral habitats, including Deepwater Horizon (DWH) injured and reference sites at depths of 1,100–2,000 m. The cruise includes objectives from MGM and HAE projects. Habitat characterization and analysis of biological samples collected with ROV Odysseus maintain long-term data flows and fill critical data gaps on the biology and ecology at impacted and reference sites, assess potential ongoing impacts from threats, refine predictive habitat models, help target locations for direct restoration and protection, and determine a baseline for health and condition. Multibeam echosounder data can help document the broadscale abundance and distribution of MDBC, characterize benthic habitats, and provide information that can help guide future ROV surveys.

DWH MDBC Cruise Report↗
USGS2026

Cost of migration increased during an outbreak of highly pathogenic avian influenza virus

Migration is thought to be costly such that challenges faced during migration likely affect how birds migrate through direct selection on migratory behavior. Survival throughout the annual cycle and conditions that affect the survival costs of migration are therefore critical to our understanding of the causes and consequences of migration. Estimating daily survival throughout the annual cycle of migratory birds has only recently become possible. We used over a decade of GPS tracking data from 186 migratory Buteo lagopus to quantify causes of mortality as well as demographic, seasonal, and spatial variation in daily survival and how survival consequences of migration changed during an outbreak of highly pathogenic avian influenza virus. The cost of migration via direct mortality varied between avian influenza and baseline study periods. Surprisingly, mortality risk during typical spring migrations was lower than in all other seasons, but mortality risk during the avian influenza outbreak was higher during both spring and fall migrations. Additionally, we found increased mortality risk in females during the avian influenza outbreak but no sex differences during baseline periods. Hence, the relative cost of migration was altered by the virus. During baseline periods, mortality risk was highest during late fall migration and winter, coinciding with increased anthropogenic-related mortalities at lower latitudes. However, the number of deaths caused by avian influenza (n = 11) in a single year equaled the total number of deaths caused by anthropogenic-related factors (n = 11; primarily collision trauma and persecution) across all 12 study years. Overall, our study highlights how added stressors such as disease outbreaks and anthropogenic factors may exacerbate existing seasonal constraints by directly increasing mortality risk.

Journal of Avian Biology↗