SEARCH · Search USGS

Results for “Biological Control”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 145 records · Page 8Linked to original sources

USGS2026

Patterns of recent brook trout invasion in bull trout streams in relation to habitat, source connectivity, biotic resistance, and disturbance

Knowledge of which habitats are at risk of invasion by nonnative species is essential to conservation, but a changing climate often complicates assessments of where future invasions may occur. Nonnative brook trout Salvelinus fontinalis threaten cold-adapted native salmonids throughout western North America, and the extent of future invasions in coldwater streams is recognized as an area of uncertainty with important consequences. We addressed this uncertainty using spatial-stream-network (SSN) modeling to develop a species distribution model (SDM) for brook trout in Idaho, creating high-resolution prediction maps of suitable (i.e., invadable) habitat under baseline (1990–2015) and future (2080s) climate scenarios, and querying predictions within natal bull trout S. confluentus habitat patches (stream–subwatershed scale) for each scenario. Results indicated that brook trout will experience a net loss of suitable habitat in Idaho, but a large increase of suitable habitat in cold streams. The total proportion of bull trout habitat invadable by brook trout increased from 0.33 during the baseline scenario to 0.44 during the future scenario—a result of upstream expansions of brook trout habitat that were partially offset by contractions in bull trout habitat. Changes in the proportion of invadable habitat varied widely among bull trout patches. Between scenarios, the largest increases in suitable habitat occurred in small, low-gradient, unconfined streams with mean August water temperatures of 7–9 °C during the baseline period. A relatively small proportion of patches contained the majority of invadable habitat in both scenarios, particularly patches in “U-shaped” glacial valleys. A changing climate will broadly increase the threat that brook trout pose to bull trout, but the degree of change experienced by individual populations will vary with local context. The high-resolution prediction maps created by our SSN model will help conservation planners identify and prioritize control efforts on the small proportion of brook trout populations that most threaten bull trout.

Idaho↗

USGS2019

Case studies in groundwater contaminant fate and transport

A case study of groundwater contamination is a detailed study of a single site contaminated with a chemical or mixture that is known to be a problem at many sites. The goal of case studies is to provide insights into the physical, chemical, and biological processes controlling migration, natural attenuation, or remediation of common groundwater contaminants. Ideally, processes occurring at a case study site are representative of other sites so that knowledge gained from these intensive studies can be applied at thousands of sites where fewer data are available. Several characteristics of case studies contribute to their value. First, they may have tens to hundreds of monitoring wells, compared to fewer than ten wells at some contaminated sites. Second, some case studies continue for many years or even decades, providing insights into temporal progression of slow processes. Third, analytical methods prohibitively expensive for routine use or under development may be tested at case study sites. Finally, the ongoing characterization typical of case study sites builds a foundation of knowledge that facilitates sophisticated experimental design and testing of new methods. This article is divided into sections based on the contaminant type because the chemical and biological processes required for remediation vary for each contaminant. Most importantly, some contaminants can be biodegraded whereas metals and radionuclides cannot be destroyed but can be immobilized or rendered less toxic. The emphasis is on case studies of natural processes that control the fate and transport of contaminants in groundwater rather than on active remediation methods. The principles learned from these studies may form the basis for design of remedial strategies. The organic contaminants are divided into: petroleum hydrocarbons, fuel oxygenates, coal tar and wastes from manufactured gas plants, and chlorinated solvents. The inorganic contaminants covered are metals and radionuclides, arsenic, and nitrate. Case studies of mixed waste plumes from landfills are also described. Experimental sites where contaminants have been introduced into an aquifer as an emplaced source or a controlled release may not meet the above definition of case studies, but some are included because the overall goal is to impart lessons learned from detailed field studies. It is impossible to cover all case studies in this short format. Conversely, focusing on one or two does not convey the breadth of research results in entire range of case studies. Instead, the strategy is to describe the evolution of knowledge for each contaminant class while providing citations of relevant case studies. Much of the progress in understanding of the fate of contaminants in groundwater is based on laboratory studies; thus whenever possible, papers that included both field and laboratory results have been included among the citations. Two topics of growing importance have not been covered. These are the fate of pharmaceuticals in groundwater and discharge of contaminant plumes to surface water. These topics merit coverage in the future as knowledge grows and case studies increase in number.

Environmental Science↗

USGS2004

Incorporating uncertainty into mercury-offset decisions with a probabilistic network for National Pollutant Discharge Elimination System permit holders: An interim report

This interim report describes an alternative approach for evaluating the efficacy of using mercury (Hg) offsets to improve water quality. Hg-offset programs may allow dischargers facing higher-pollution control costs to meet their regulatory obligations by making more cost effective pollutant-reduction decisions. Efficient Hg management requires methods to translate that science and economics into a regulatory decision framework. This report documents the work in progress by the U.S. Geological Survey’s Western Geographic Science Center in collaboration with Stanford University toward developing this decision framework to help managers, regulators, and other stakeholders decide whether offsets can cost effectively meet the Hg total maximum daily load (TMDL) requirements in the Sacramento River watershed. Two key approaches being considered are: (1) a probabilistic approach that explicitly incorporates scientific uncertainty, cost information, and value judgments; and (2) a quantitative approach that captures uncertainty in testing the feasibility of Hg offsets. Current fate and transport-process models commonly attempt to predict chemical transformations and transport pathways deterministically. However, the physical, chemical, and biologic processes controlling the fate and transport of Hg in aquatic environments are complex and poorly understood. Deterministic models of Hg environmental behavior contain large uncertainties, reflecting this lack of understanding. The uncertainty in these underlying physical processes may produce similarly large uncertainties in the decisionmaking process. However, decisions about control strategies are still being made despite the large uncertainties in current Hg loadings, the relations between total Hg (HgT) loading and methylmercury (MeHg) formation, and the relations between control efforts and Hg content in fish. The research presented here focuses on an alternative analytical approach to the current use of safety factors and deterministic methods for Hg TMDL decision support, one that is fully compatible with an adaptive management approach. This alternative approach uses empirical data and informed judgment to provide a scientific and technical basis for helping National Pollutant Discharge Elimination System (NPDES) permit holders make management decisions. An Hg-offset system would be an option if a wastewater-treatment plant could not achieve NPDES permit requirements for HgT reduction. We develop a probabilistic decision-analytical model consisting of three submodels for HgT loading, MeHg, and cost mitigation within a Bayesian network that integrates information of varying rigor and detail into a simple model of a complex system. Hg processes are identified and quantified by using a combination of historical data, statistical models, and expert judgment. Such an integrated approach to uncertainty analysis allows easy updating of prediction and inference when observations of model variables are made. We demonstrate our approach with data from the Cache Creek watershed (a subbasin of the Sacramento River watershed). The empirical models used to generate the needed probability distributions are based on the same empirical models currently being used by the Central Valley Regional Water Quality Control Cache Creek Hg TMDL working group. The significant difference is that input uncertainty and error are explicitly included in the model and propagated throughout its algorithms. This work demonstrates how to integrate uncertainty into the complex and highly uncertain Hg TMDL decisionmaking process. The various sources of uncertainty are propagated as decision risk that allows decisionmakers to simultaneously consider uncertainties in remediation/implementation costs while attempting to meet environmental/ecologic targets. We must note that this research is on going. As more data are collected, the HgT and cost-mitigation submodels are updated and the uncertainties may be reduced. Subsequently, the value of using a probabilistic framework for estimating and explicitly stating these uncertainties within a decisionmaking process can be estimated when new data are collected. Future work includes the design and implementation of a Bayesian network decision support system (BN-DSS) to produce mitigation scenarios for offset-project evaluation in the Cache Creek watershed. The decisionmaker, a wastewater-treatment plant, is expected to evaluate potential Hg-offset programs in terms of changes in HgT load changes, MeHg-production potential, project cost, and other suitability criteria. Subsequently, scenarios can be analyzed by performing sensitivity analyses and ranking environmental and economic uncertainties in terms of the decisionmaker’s preferences and risk choices. Such an analysis allows decisionmakers and stakeholders to explore various scenarios and predict the consequences of different stated preferences over outcomes.

Open-File Report↗

USGS2014

Synergistic interactions between leaf beetle herbivory and fire enhance tamarisk ( Tamarix spp.) mortality

The combined effects of herbivory and fire on plant mortality were investigated using prescribed burns of tamarisk ( Tamarix ramosissima Lebed) exposed to herbivory by the saltcedar leaf beetle (Chrysomelidae: Diorhabda carinulata Desbrocher). Tamarix stands in the Humboldt Sink (NV, USA) were divided into three treatments: summer burn (August 2006), fall burn (October 2006) and control (unburned), and litter depth was manipulated to vary fire intensity within burn seasons. A gradient of existing herbivory impact was described with three plant condition metrics prior to fire: reduced proportions of green canopy, percent root crown starch sampled at the height of the growing season (August 2006), and percent root crown starch measured during dormancy (December 2006). August root crown starch concentration and proportion green canopy were strongly correlated, although the proportion green canopy predicted mortality better than August root crown starch. December root crown starch concentration was more depleted in unburned trees and in trees burned during the summer than in fall burn trees. Mortality in summer burned trees was higher than fall burned trees due to higher fire intensity, but December root crown starch available for resprouting in the spring was also lower in summer burned trees. The greatest mortality was observed in trees with the lowest December root crown starch concentration which were exposed to high fire intensity. Disproportionate changes in the slope and curvature of prediction traces as fire intensity and December starch reach reciprocal maximum and minimum levels indicate that beetle herbivory and fire intensity are synergistic.

Nevada↗

USGS2017

A coupled metabolic-hydraulic model and calibration scheme for estimating of whole-river metabolism during dynamic flow conditions

Conventional methods for estimating whole-stream metabolic rates from measured dissolved oxygen dynamics do not account for the variation in solute transport times created by dynamic flow conditions. Changes in flow at hourly time scales are common downstream of hydroelectric dams (i.e. hydropeaking), and hydrologic limitations of conventional metabolic models have resulted in a poor understanding of the controls on biological production in these highly managed river ecosystems. To overcome these limitations, we coupled a two-station metabolic model of dissolved oxygen dynamics with a hydrologic river routing model. We designed calibration and parameter estimation tools to infer values for hydrologic and metabolic parameters based on time series of water quality data, achieving the ultimate goal of estimating whole-river gross primary production and ecosystem respiration during dynamic flow conditions. Our case study data for model design and calibration were collected in the tailwater of Glen Canyon Dam (Arizona, USA), a large hydropower facility where the mean discharge was 325 m3 s 1 and the average daily coefficient of variation of flow was 0.17 (i.e. the hydropeaking index averaged from 2006 to 2016). We demonstrate the coupled model’s conceptual consistency with conventional models during steady flow conditions, and illustrate the potential bias in metabolism estimates with conventional models during unsteady flow conditions. This effort contributes an approach to solute transport modeling and parameter estimation that allows study of whole-ecosystem metabolic regimes across a more diverse range of hydrologic conditions commonly encountered in streams and rivers.

Arizona↗

USGS2002

Distribution and abundance of mymarid parasitoids (Hymenoptera: Mymaridae) of Sophonia rufofascia Kuoh and Kuoh (Homoptera: Cicadellidae)in Hawaii

The abundance of mymarid parasitoids attacking the two-spotted leafhopper (Sophonia rufofascia [Kuoh and Kuoh]), a polyphagous pest recently adventive to Hawaii, was monitored using yellow sticky cards deployed in several areas on the islands of Kauai and Hawaii. The yellow cards captured Chaetomymar sp. nr bagicha Narayanan, Subba Rao, & Kaur and Schizophragma bicolor (Dozier), both adventive species, and Polynema sp. Haliday, which is endemic to Hawaii (Hymenoptera: Mymaridae). The former two species were most abundant at all sites. On Kauai, there was a negative correlation between the captures of C. sp. nr bagicha and those of Polynema sp. Throughout the season, the increase in parasitoid numbers generally followed the increase in leafhopper numbers. C. sp. nr. bagicha and S. bicolor showed distinct habitat preferences. Removal of Myrica faya Aiton, an invasive weed that is a highly preferred two-spotted leafhopper host, decreased the overall numbers of captured parasitoids, but led to a twofold increase in the ratio of trapped parasitoids/hosts in weed-free areas. ?? 2002 Elsevier Science (USA).

Biological Control↗

USGS2016

Controls on distribution patterns of biological soil crusts at micro- to global scales

Biocrusts are heterogeneously distributed in space. The drivers of their distribution patterns vary depending on the spatial scale of observation. Globally, there are about 1337 cyanobacteria, algae, bryophyte, and lichen species reported as components of biocrusts. At the broadest biogeographical scales, the degree and age of isolation of land masses may dictate distribution of these species and the similarities of the floras of different continents. At intra-continental and smaller scales, climate strongly influences abundance and community composition of biocrusts. Within drylands, biocrusts become more abundant as precipitation increases. The seasonality of rainfall is about equally important, with regions receiving most precipitation as winter rain and snow exhibiting the highest abundance and greatest relative cover of bryophyte and lichens vs. cyanobacteria. Temperature gradients may dictate the dominant cyanobacterium present in the community. At eco-regional and smaller scales, edaphic gradients determined by either soil parent materials or geomorphology or both become particularly influential. Globally, the most significant soil properties influencing the eco-regional scale cover and richness of biocrusts in dryland environments are soil texture, pH, and soil CaCO3 content. Sandier soils tend to favour development of cyanobacterial biocrusts, whereas mosses and lichens tend to be more abundant on finer textured soils. The alkalinity and CaCO3 content of soils are associated with greater bioocrust abundance in some regions, and dictates the species composition in the bryophyte and lichen component. Globally, gypsiferous soils are often associated with distinct floras and high abdundances of biocrusts, especially lichens. At local to micro-scales, biocrusts often are better developed in habitats with lower radiation loads such as polar-oriented slopes, or shaded habitats. Also at small scales, vascular plant canopies buffer microclimate for biocrusts, but also exert negative influences such as burial by litter. While our knowledge of biocrust distribution has advanced rapidly, there are considerable geographic and taxonomic gaps in our knowledge and a pronounced lack of truly global studies.

Book chapter↗

USGS2021

Weed-suppressive bacteria effects differ in culture compared to in soils and with or without microbial competition and separation of active ingredient

Weed-suppressive bacteria (WSB), specifically the D7 and ACK55 strains of Pseudomonas fluorescens , were previously reported to selectively inhibit growth of invasive annual grasses (IAGs) that have caused severe ecosystem degradation across much of the western US. However, recent studies show highly mixed evidence for WSB effectiveness in field settings. We evaluated how the effectiveness of WSB, specifically selective inhibition of exotic annual but not native perennial grasses, was altered by (1) growth media (soil vs. agar culture), (2) pre-sterilization to remove competing microbes, and (3) WSB concentration, reduced by centrifuging with and without filtration. WSB had no effects in soil microcosms with or without pre-sterilization, but WSB did have effects in agar cultures. On agar, WSB effects were amplified by pre-sterilizing seeds prior to treatment with WSB inoculum – but effects were non-selective (i.e., native and exotic plants were equally inhibited) with or without pre-sterilization at high WSB concentration. The only selective effects of WSB were observed on agar at low WSB concentrations, made possible by centrifuging WSB cells out of the inoculum prior to treatment application (from ~10 7 to ~10 5 live cells/ml). Completely removing WSB cells from inoculum by filtration led to no WSB effects. While these results suggest the desired effects of WSB can be reproduced on agar with a supernatant containing the putative active agent and a low density of WSB cells, the effect is still not reproducible for plants in soil, even when competing microbes are removed. Thus, additional research is needed to determine if, when, where, and how WSB could be effective in field settings.

Biological Control↗

USGS2005

Ca cycling and isotopic fluxes in forested ecosystems in Hawaii

Biogeochemical processes fractionate Ca isotopes in plants and soils along a 4 million year developmental sequence in the Hawaiian Islands. We observed that plants preferentially take up 40Ca relative to 44Ca, and that biological fractionation and changes in the relative contributions from volcanic and marine sources produce a significant increase in 44Ca in soil exchangeable pools. Our results imply moderate fluxes enriched in 44Ca from strongly nutrient-depleted old soils, in contrast with high 40Ca fluxes in young and little weathered environments. In addition, biological fractionation controls divergent geochemical pathways of Ca and Sr in the plant-soil system. While Ca depletes progressively with increasing soil age, Sr/Ca ratios increase systematically. Sr isotope ratios provide a valuable tracer for provenance studies of alkaline earth elements in forested ecosystems, but its usefulness is limited when deciphering biogeochemical processes involved in the terrestrial Ca cycle. Ca isotopes in combination with Sr/ Ca ratios reveal more complex processes involved in the biogeochemistry of Ca and Sr. Copyright 2005 by the American Geophysical Union.

Geophysical Research Letters↗

USGS1984

Chronobiologic approach to aquaculture

Diel and seasonal changes in the environment directly or indirectly control many biological functions. Chronobiology, the study of biological functions in relation to time of day, time of year, lunar phases, and other consistent cues, could have important applications in aquaculture. Physiological conditions that vary seasonally include feeding time, tolerance of fish to stress, the state of gonad development, lipid and water content of muscle tissue, and the dress‐out weight of food fish. The quality of cultured fish may vary with the time of day when fish are fed, seined, graded, treated with therapeutic chemicals, injected with hormones, or physically disturbed. Efficiency of production and quality of aquacultural products might be improved if the activities of fish husbandry were timed to coincide with the biological rhythms of fish.

Transactions of the American Fisheries Society↗

USGS2004

Toward a comprehensive information system to assist invasive species management in Hawaii and Pacific Islands

The need for coordinated regional and global electronic databases to assist prevention, early detection, rapid response, and control of biological invasions is well accepted. The Pacific Basin Information Node (PBIN), a node of the National Biological Information Infrastructure, has been increasingly engaged in the invasive species enterprise since its establishment in 2001. Since this time, PBIN has sought to support frontline efforts at combating invasions, through working with stakeholders in conservation, agriculture, forestry, health, and commerce to support joint information needs. Although initial emphasis has been on Hawaii, cooperative work with other Pacific islands and countries of the Pacific Rim is already underway and planned.

Weed Science↗

USGS2002

Coniform stromatolites from geothermal systems, North Island, New Zealand

Coniform stromatolites are found in several sites in the Tokaanu and Whakarewarewa geothermal areas of North Island, New Zealand. At Tokaanu, silicification of these stromatolites is taking place in Kirihoro, a shallow hot springfed pool. At Whakarewarewa, subfossil silicified coniform stromatolites are found on the floor of "Waikite Pool" on the discharge apron below Waikite Geyser, and in an old sinter succession at Te Anarata. The microbes in the coniform stromatolites from Tokaanu, Waikite Pool, and Te Anarata have been well preserved through rapid silicification. Nevertheless, subtle differences in the silicification style induced morphological variations that commonly mask or alter morphological features needed for identification of the microbes in terms of extant taxa. The coniform stromatolites in the New Zealand hotspring pools are distinctive because (1) they are formed of upward tapering (i.e., conical) columns, (2) neighboring columns commonly are linked by vertical sheets or bridges, (3) internally, they are formed of alternating high- and low-porosity laminae that have a conical vertical profile, and (4) Phormidium form more than 90% of the biota. As such, they are comparable to modern coniform mats and stromatolites found in the geothermal systems of Yellowstone National Park and ice-covered lakes in Antarctica. Formation of the coniform stromatolites is restricted to pools that are characterized by low current energy and a microflora that is dominated by Phormidium. These delicate and intricate stromatolites could not form in areas characterized by fast flowing water or a diverse microflora. Thus, it appears that the distribution of these distinctive stromatolites is controlled by biological constraints that are superimposed on environmental needs.

Palaios↗

USGS2012

Bibliography of Dreissena polymorpha (zebra mussels) and Dreissena rostriformis Bugensis (QUAGGA mussels): 1989 to 2011

Dreissenid mussels invaded and colonized waters of the Laurentian Great Lakes during the late 1980s. Their colonization and resulting impact have been characterized as one of the most important ecological changes in freshwater systems in North America. The need for information on dreissenid mussels has grown during the past 2 decades, which has prompted the compilation of this bibliography. Two previous bibliographies of dreissenid mussels indicate average publication rates were 6 publications/year between 1771 and 1964 (1,180 in 194 y) and 30 publications/year between 1964 and 1993 (885 in 30 y). In the current bibliography, the average rate of publication doubled during the past 23 y (1989 to 2011) to 66 publications/year based on a total of 1,502 publications. These rates may be biased by increased numbers of researchers and journals over time but, at a minimum, these rates indicate continued interest and concern by humans about the impact of dreissenid mussels on water availability and the expanding range of dreissenids throughout the world. The current bibliography has a 94% efficiency rate for subject and 100% efficiency for title search criteria when compared with references in published studies of dreissenid mussels in 2011. In addition to publications, we included 206 student theses and 225 chapters in 26 books including 6 books devoted solely to dreissenid mussels. A vast majority of student theses were about dreissenid mussels in North America, especially in the Laurentian Great Lakes. The 6 books devoted to dreissenid mussels contained a variety of chapters that described biology, impact, control, and ecology of dreissenid mussels in both Europe (published in 1992 and 2010) and North America (1993, 1994, 1997, and 2000). In addition, there is a 7th book devoted solely to dreissenid mussels that is near completion.

Journal of Shellfish Research↗

USGS2004

The USGS role in mapping the nation's submerged lands

The seabed provides habitat for a diverse marine life having commercial, recreational, and intrinsic value. The habitat value of the seabed is largely a function of the geological structure and related geological, biological, oceanologic, and geochemical processes. Of equal importance, the nation's submerged lands contain energy and mineral resources and are utilized for the siting of offshore infrastructure and waste disposal. Seabed character and processes influence the safety and viability of offshore operations. Seabed and subseabed characterization is a prerequisite for the assessment, protection, and utilization of both living and non-living marine resources. A comprehensive program to characterize and understand the nation's submerged lands requires scientific expertise in the fields of geology, biology, hydrography, and oceanography. The U.S. Geological Survey (USGS) has long experience as the Federal agency charged with conducting geologic research and mapping in both coastal and offshore regions. The USGS Coastal and Marine Geology Program (CMGP) leads the nation in expertise related to characterization of seabed and subseabed geology, geological processes, seabed dynamics, and (in collaboration with the National Oceanic and Atmospheric Administration (NOAA) and international partners) habitat geoscience. Numerous USGS studies show that sea-floor geology and processes determine the character and distribution of biological habitats, control coastal evolution, influence the coastal response to storm events and human alterations, and determine the occurrence and concentration of natural resources.

Fact Sheet↗

USGS2000

Cruise report RV Ocean Surveyor cruise O-1-00-GM the bathymetry and acoustic backscatter of the Pinnacles area, northern Gulf of Mexico May 23, through June 10, 2000 Venice, LA to Venice, LA

An extensive deep (~100 m) reef tract occurs on the Mississippi-Alabama outer continental shelf (OCS). The tract, known as "The Pinnacles", is apparently part of a sequence of drowned reef complexes along the "40-fathom" shelf edge of the northern Gulf of Mexico (Ludwick and Walton, 1957). It is critical to determine the accurate geomorphology of deep-reefs because of their importance as benthic habitats for fisheries. The Pinnacles were mapped by Ludwick and Walton (1957) using a single-beam echo sounder but the spatial extent and morphology were interpreted from a series of widely separated, poorly navigated bathymetric profiles. Other recent studies, supported by Minerals Management Service (MMS), used towed sidescan sonars and single-channel seismic-reflection profiling. None of the existing studies provide the quality of geomorphic data necessary for reasonable habitat studies. The fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have relatively ignored. The ecology of deep ahermatypic reefs is fundamentally different from hermatipic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Deep OCS reefs also lie below the practical working depths for SCUBA; consequently, remote investigations from a ship or in situ investigations using submersibles or ROVs are required. Community structure and trophodynamics of demersal fishes of the Pinnacles are presently the focus of USGS reseach. A goal of the research is to answer questions concerning the relataive roles played by geomorphology and surficial geology in the interaction with and control of biological differentiation. OCS reefs are important because we now know that such areas are important coral reef fish havens, key spawning 2 sites, and a critical early larval and juvenile habitats for economically important sport/food fishes. Also, deep-reef ecosystems as well as the fish populations they sustain are impacted by intensive oil-field development. It is now known that deep OCS reefs function as a key source of re-population (via seasonal and ontogenetic migration) of already heavily impacted inshore reefs. A reflection of this realization is the recent closure by the Gulf States Fisheries Management Council of a 600 mi 2 area of the Florida Middle Grounds (another unmapped major "40-fathom" OCS reef complex) to commercial fishing to preserve grouper spawning aggregations. It is known that the Pinnacles reefs support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges—together forming a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents flowing predominantly out of the SW, up, along and across the shelf edge. These currents are intercepted by pinnacles reefs, which lie roughly in two linear tracts, parallel to the coastline (see fig. 1 in report). USGS research initiated in 1997 (Sulak et al., in progress) has demonstrated that the Pinnacles reef fish fauna is dominated by planktivorous fishes. Ongoing food habits, trophic web and stable isotope analyses by the USGS are reinforcing a basic picture of deep OCS reefs as ecosystems based on exogenous current-borne plankton. Long-term current meter deployments have demonstrated that the >3 m, <16m relief of the Pinnacles reefs disrupts the prevailing currents, inducing local complexity (F. Kelly, Texas A&M Univ., pers. comm.) favorable to plankton and planktivores. Geodetically accurate bathymetry maps, coregistered with calibrated acoustic backscatter maps, are critical to delineate benthic biotopes, and are essential to correlate biological community differentiation with the physical environment. Previous mapping of the Pinnacles area using the TAMU towed single-beam sidescan system (Anonymous., 1999) employed technology with inherent deficiencies in backscatter calibration, bathymetric precision, and geo-referencing. The resulting bathymetric interpretations of TAMU data are further degraded by ship-track-parallel artifacts that obliterate geomorphology rendering them inadequate to provide high-resolution mapping of individual target reefs (typical maximum relief 15 m, diameter 200-500 m). The sidescan-sonar surveys of the area (Laswell et al., 1990) suffer many of the same deficiencies as the TAMU data so they add no quantitative and little qualitative information about the geomorphology and surficial geology.

Gulf of Mexico, the Pinnacles area↗

USGS2020

Aquatic invasive species in the Chesapeake Bay drainage—Research-based needs and priorities of U.S. Geological Survey partners and collaborators

Executive Summary The U.S. Geological Survey (USGS) is revising the Chesapeake Bay-based science plan to align it with recent U.S. Department of Interior and USGS science priorities that include, as stated in the plan, providing “an integrated understanding of the factors affecting fish habitat, fish health, and landscape conditions” in Chesapeake Bay and its watershed. A report of partner agencies’ needs and priorities related to aquatic invasive species (AIS) science was identified as an informational gap; a report would help to further development of the science program related to aquatic animal health and habitat. This objective was addressed through review of pertinent documentation and conversations with representatives of State, Federal, and regional agencies with vested interests in AIS management in Chesapeake Bay and the Chesapeake Bay drainage area, and this document was produced to summarize the related findings. All agencies and organizations (13) reported that AIS are of general concern, with most stakeholder groups reporting AIS-related issues to be of high priority, including invasive fishes and invertebrates, invasive plants, and microbes including aquatic animal pathogens. Invasive fishes are of great concern to all partner agencies. Channa argus (northern snakehead) and Ictalurus furcatus (blue catfish) are high priority and represent the two most named AIS of concern for these agencies. Nine of 10 stakeholder groups listed northern snakehead as a high priority species, and 6 listed blue catfish as a high priority species as well. Pylodictis olivaris (flathead catfish), invasive crayfish species , and dressenid mussels were also prioritized by multiple partner groups, each receiving specific mention by at least 3 of the 10 stakeholder groups in discussions or documents. Invasive carp, such as Hypophthalmichthys molatrix (silver carp), also received mention by multiple agencies (3 of the 10 stakeholder groups) because these fish represent priority AIS in nearby watersheds and a threat for introduction and dissemination within the Chesapeake Bay watershed from these neighboring regions. Invasive plants are among priority species, and Hydrilla verticillata (hydrilla) topped the list. Hydrilla was reported as a priority species by 5 of the stakeholder groups queried. Trapa natans and T. bispinosa (water chestnut), Phragmites australis (common reed), and Lythrum salicaria (purple loosestrife) were also among the aquatic invasive plants that were prioritized by multiple partner agencies. Multiple stakeholder groups (5 of the 10 groups) also considered Didymosphenia geminata (didymo) and various aquatic animal pathogens among their priority AIS for management considerations. Science needs that were recurrently indicated by stakeholders to support management of invasive species include Technology to enhance biosurveillance capability, such as reliable environmental DNA based detection methodology; Risk assessment modeling to forewarn of and prioritize AIS-related threats; Increased information and intervention methods related to vectors and pathways of AIS introductions; Increased information about the biology and life history of AIS, including information related to trophic interactions, health and disease, and distribution and abundance; and Potential applications of mitigation strategies, including genetically based biocontrol mechanisms. Potential next steps to address the science needs include Development of biosurveillance and risk assessment tools for identification of AIS in proactive management; Development of proactive management techniques to prevent AIS introductions through recognized vectors and pathways; Development of interagency biosurveillance programs to best utilize personnel, funds, and other resources among interested agencies and organizations; Investigations to address life history, consequences, and movement/dissemination of top priority invasive species in the region; Investigations to determine the potential for novel mitigation technologies, such as the application of synthetic biological (genetic) control methods; and Investigations with focus on emerging and high priority AIS in the region, including fishes (blue catfish, flathead catfish, northern snakehead), invertebrates (invasive crayfish and mollusks) and plants (hydrilla, water chestnut, phragmites).

Virginia, Maryland, Delaware, West Virginia, Penns↗

USGS2005

Preliminary results from a shallow water benthic grazing study

The nutrient-rich, shallow waters of San Francisco Bay support high rates of primary production, limited not by nutrients but by light availability and benthic grazing (Alpine and others 1992; Cloern 1982). Phytoplankton blooms are an important food source for upper trophic levels. Consequently animal populations, such as fish, may suffer under conditions of high benthic bivalve grazing. It has been hypothesized that several species of fish are suffering as a result of severe decreases in available phytoplankton since the introduction of Potamocorbula amurensis into San Francisco Bay (Feyrer 2003). The extent of reduction in phytoplankton biomass by benthic bivalves is dependent on both physical and biological factors in addition to their spatial and temporal variability. Physical factors identified as important include: (1) vertical mixing rates, which are a function of wind velocity, currents, and bottom roughness; (2) suspended sediment concentrations; and (3) phytoplankton settling rates. The biological factors controlling the extent of phytoplankton grazing include animal density and organism size, pumping rate, food type and concentration, metabolic demands, assimilation efficiency, and behaviour (Wildish and Kristmanson 1997). Several laboratory studies involving model and live clams have shown that benthic grazers can deplete phytoplankton in the water column (for example, Cole and others 1992). Initially, these studies assumed that the water column remained well mixed above benthic suspension feeders; therefore, parameters measured in the bulk water column were believed to be representative of available particle concentration. For this reason many relationships describing the influence of the bulk flow and bulk seston concentration on benthic grazers physiological processes exist (for example, Levinton 1991). Laboratory measurements using live animals have shown that filtration rates vary with free stream velocity (for example, Levinton 1991). Increases in current speed lead to an increase in filtration rate; however, several studies have shown that filtration may cease at some critical current speed. It has been suggested that resuspension, occurring as a result of high current speeds, may be a factor that negatively affects uptake (Cloern 1987; Levinton 1991). Several mechanisms have been invoked to explain the effects of low speed on growth rates of active suspension feeders. These mechanisms include the formation of a concentration boundary layer and the limiting horizontal flux of seston. It is now accepted that a combination of these factors dictates the growth success of benthic grazers in a particular area. Several field studies have shown that concentration boundary layers can form over benthic ecosystems (for example, Frechette and others 1989, Dolmer 2000); however, many of these studies have failed to measure the hydrodynamics needed to calculate benthic grazing rates. Furthermore, calculating benthic grazing rates with vertical measurements at a single point is problematic due to lack of knowledge of the horizontal gradients in seston (Thompson and others, forthcoming). Despite great improvements in our knowledge on the effects of benthic grazers on seston concentrations in water columns, the effects of different hydrodynamic conditions on grazing rates has not been formulated. This makes it difficult to assess the system-wide effect of the benthic ecosystem on phytoplankton concentrations. Furthermore, it affects our ability to predict the potential success of a benthic species, such as the invasive clams Corbicula fluminea and Potamocorbula amurensis. This paper presents the preliminary results of a control volume approach to elucidate the effect of different hydrodynamic conditions on the grazing rates of Corbicula fluminea.

California↗

USGS2009

IPANE: Could New England's Early Detection Network benefit eastern Canada?

The Invasive Plant Analysis of New England (IPANE: ipane.org) is a multifaceted approach to regional early detection of invasive plants. IPANE, was founded in 2001 to create a comprehensive six state New England regional partnership to: minimize the ecological damage caused by invasive plants; provide reliable and accessible educational material; maintain a network of professional and trained volunteers to gather information and to locate new incursions; provide a web-accessible database and maps of invasive and potentially invasive plants; conduct and encourage research on the biology and ecology of invasive plants; and, use program-generated data to develop predictive distribution models for the region. This program uses the synergy of all the components to create a regional early detection and rapid assessment network to curtail new invasions before they become widespread on the regional landscape. IPANE is a model for the United States Geological Survey National Early Detection Network Toolbox, a compendium of information developed for use by Network partners. In addition, an Early Detection Alert system has been developed to inform key federal and state agency staff, conservation organizations, and those with vegetation management responsibilities about new or potential invaders to the region. These include current and anticipated distribution, diagnostic characters, images, pertinent biological and control information, and key contacts. Most of the non-native species currently considered invasive by IPANE appear to be spreading into New England from the south or west. IPANE is strategically placed to act as an advanced warning system for the 5 provinces of Eastern and Maritime Canada. At the meeting held in Nova Scotia in September 2007, this idea was suggested to attendees from 4 of these 5 provinces and the Canadian government. By expanding its alert systems, IPANE could serve as a focal point for Early Detection information moving in any direction and tie Eastern Canada into the National Early Detection Network of the United States.

Conference Paper↗