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USGS2019

Submarine permafrost map in the arctic modelled using 1D transient heat flux (SuPerMAP)

Offshore permafrost plays a role in the global climate system, but observations of permafrost thickness, state, and composition are limited to specific regions. The current global permafrost map shows potential offshore permafrost distribution based on bathymetry and global sea level rise. As a first‐order estimate, we employ a heat transfer model to calculate the subsurface temperature field. Our model uses dynamic upper boundary conditions that synthesize Earth System Model air temperature, ice mass distribution and thickness, and global sea level reconstruction and applies globally distributed geothermal heat flux as a lower boundary condition. Sea level reconstruction accounts for differences between marine and terrestrial sedimentation history. Sediment composition and pore water salinity are integrated in the model. Model runs for 450 ka for cross‐shelf transects were used to initialize the model for circumarctic modeling for the past 50 ka. Preindustrial submarine permafrost (i.e., cryotic sediment), modeled at 12.5‐km spatial resolution, lies beneath almost 2.5 ×10 6 km 2 of the Arctic shelf. Our simple modeling approach results in estimates of distribution of cryotic sediment that are similar to the current global map and recent seismically delineated permafrost distributions for the Beaufort and Kara seas, suggesting that sea level is a first‐order determinant for submarine permafrost distribution. Ice content and sediment thermal conductivity are also important for determining rates of permafrost thickness change. The model provides a consistent circumarctic approach to map submarine permafrost and to estimate the dynamics of permafrost in the past.

Journal of Geophysical Research C: Oceans↗

USGS2012

Gravity anomaly at a Pleistocene lake bed in NW Alaska interpreted by analogy with Greenland's Lake Taserssauq and its floating ice tongue

A possible example of a very deep glacial excavation is provided by a distinctive gravity low located at the front of a valley glacier that once flowed into glacial Lake Aniuk (formerly Lake Noatak) in the western Brooks Range. Geologic and geophysical data suggest that sediments or ice filling a glacially excavated valley are the most probable cause of the 30–50 mGal anomaly. Reasonable choices of geometric models and density contrasts indicate that the former excavation is now filled with a buried-ice thickness of 700 m or sediment thicknesses greater than 1 km; comparable anomalies are not known for other glaciated lacustrine valleys. However, many fiords do exceed 1 km in depth, and Crary found one nearly 2 km deep in Antarctica. In studying this fiord, he suggested the probable increased efficiency of excavation directly behind the point where an outlet glacier becomes afloat to form the Ross Ice Shelf and where it thus has a vertical component of motion and a mechanism for debris removal. Floating glacier ice tongues are now rare in the Arctic, but they exist in maritime parts of northern Ellesmere Island and Greenland. Studies of ice movement, environment, and morphology of another large floating glacier tongue in a perennially frozen lake in the Angiussaq Mountains of northern Greenland suggest that Pleistocene Lake Aniuk could have had a similar environment, water temperature, and near-stable water level and that it could have maintained both a floating polar glacier tongue and a perennial ice cover. No direct evidence of efficient excavation was observed in Greenland, but efficient glacial erosion behind a floating polar ice tongue could explain the excavation that caused the Alaskan gravity anomaly.

Journal of Geophysical Research Solid Earth↗

USGS2005

Relationship of otolith strontium-to-calcium ratios and salinity: Experimental validation for juvenile salmonids

Analysis of otolith strontium (Sr) or strontium-to-calcium (Sr:Ca) ratios provides a powerful tool to reconstruct the chronology of migration among salinity environments for diadromous salmonids. Although use of this method has been validated by examination of known individuals and translocation experiments, it has never been validated under controlled experimental conditions. In this study, incorporation of otolith Sr was tested across a range of salinities and resulting levels of ambient Sr and Ca concentrations in juvenile chinook salmon ( Oncorhynchus tshawytscha ), coho salmon ( Oncorhynchus kisutch ), sockeye salmon ( Oncorhynchus nerka ), rainbow trout ( Oncorhynchus rnykiss ), and Arctic char ( Salvelinus alpinus ). Experimental water was mixed, using stream water and seawater as end members, to create experimental salinities of 0.1, 6.3, 12.7, 18.6, 25.5, and 33.0 psu. Otolith Sr and Sr:Ca ratios were significantly related to salinity for all species (r2 range: 0.80-0.91) but provide only enough predictive resolution to discriminate among fresh water, brackish water, and saltwater residency. These results validate the use of otolith Sr:Ca ratios to broadly discriminate salinity histories encountered by salmonids but highlight the need for further research concerning the influence of osmoregulation and physiological changes associated with smoking on otolith microchemistry.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2010

Feeding ecology of arctic-nesting sandpipers during spring migration through the prairie pothole region

We evaluated food habits of 4 species of spring-migrant calidrid sandpipers in the Prairie Pothole Region (PPR) of North Dakota. Sandpipers foraged in several wetland classes and fed primarily on aquatic dipterans, mostly larvae, and the midge family Chironomidae was the primary food eaten. Larger sandpiper species foraged in deeper water and took larger larvae than did smaller sandpipers. The diverse wetland habitats that migrant shorebirds use in the PPR suggest a landscape-level approach be applied to wetland conservation efforts. We recommend that managers use livestock grazing and other tools, where applicable, to keep shallow, freshwater wetlands from becoming choked with emergent vegetation limiting chironomid production and preventing shorebird use.

Journal of Wildlife Management↗

USGS2008

Fluctuating Arctic Sea ice thickness changes estimated by an in situ learned and empirically forced neural network model

Sea ice thickness (SIT) is a key parameter of scientific interest because understanding the natural spatiotemporal variability of ice thickness is critical for improving global climate models. In this paper, changes in Arctic SIT during 1982-2003 are examined using a neural network (NN) algorithm trained with in situ submarine ice draft and surface drilling data. For each month of the study period, the NN individually estimated SIT of each ice-covered pixel (25-km resolution) based on seven geophysical parameters (four shortwave and longwave radiative fluxes, surface air temperature, ice drift velocity, and ice divergence/convergence) that were cumulatively summed at each monthly position along the pixel's previous 3-yr drift track (or less if the ice was <3 yr old). Average January SIT increased during 1982-88 in most regions of the Arctic (+7.6 ?? 0.9 cm yr-1), decreased through 1996 Arctic-wide (-6.1 ?? 1.2 cm yr-1), then modestly increased through 2003 mostly in the central Arctic (+2.1 ?? 0.6 cm yr-1). Net ice volume change in the Arctic Ocean from 1982 to 2003 was negligible, indicating that cumulative ice growth had largely replaced the estimated 45 000 km3 of ice lost by cumulative export. Above 65??N, total annual ice volume and interannual volume changes were correlated with the Arctic Oscillation (AO) at decadal and annual time scales, respectively. Late-summer ice thickness and total volume varied proportionally until the mid-1990s, but volume did not increase commensurate with the thickening during 1996-2002. The authors speculate that decoupling of the ice thickness-volume relationship resulted from two opposing mechanisms with different latitudinal expressions: a recent quasi-decadal shift in atmospheric circulation patterns associated with the AO's neutral state facilitated ice thickening at high latitudes while anomalously warm thermal forcing thinned and melted the ice cap at its periphery. ?? 2008 American Meteorological Society.

Journal of Climate↗

USGS2001

Evaluation of commercially prepared transport systems for nonlethal detection of Aeromonas salmonicida in salmonid fish

In vitro studies indicated that commercially prepared transport systems containing Amies, Stuart's, and Cary-Blair media worked equally well in sustaining the viability of the fish pathogen Aeromonas salmonicida, which causes furunculosis. The bacterium remained viable without significant increase or decrease in cell numbers for as long as 48 h of incubation at 18-20??C in Stuart's transport medium; consequently, obtaining mucus samples in such tubes were comparable to on-site detection of A. salmonicida by dilution plate counts on Coomassie Brilliant Blue agar. In three different assays of 100 samples of mucus from Atlantic salmon Salmo salar infected subclinically with A. salmonicida, dilution counts conducted on-site proved more reliable for detecting the pathogen than obtaining the samples in the transport system. In the on-site assays, dilution counts detected the pathogen in 34, 41, and 22 samples, whereas this was accomplished in only 15, 15, and 3 of the respective samples when the transport system was used. In an additional experiment, Arctic char Salvelinus alpinus sustaining a frank epizootic of furunculosis were sampled similarly. Here, too, dilution counts were more predictive of the prevalence of A. salmonicida and detected the pathogen in 46 mucus samples; in comparison, only 6 samples collected by using the transport system were positive. We also observed that the transport system supported the growth of the normal mucus bacterial flora. Particularly predominant among these were motile aeromonads and Pseudomonas fluorescens. In studies of mixed culture growth, two representatives of both of the latter genera of bacteria outgrew A. salmonicida - in some cases, to the total exclusion of the pathogen itself.

Journal of Aquatic Animal Health↗

USGS2005

The Circumpolar Arctic vegetation map

Question: What are the major vegetation units in the Arctic, what is their composition, and how are they distributed among major bioclimate subzones and countries? Location: The Arctic tundra region, north of the tree line. Methods: A photo-interpretive approach was used to delineate the vegetation onto an Advanced Very High Resolution Radiometer (AVHRR) base image. Mapping experts within nine Arctic regions prepared draft maps using geographic information technology (ArcInfo) of their portion of the Arctic, and these were later synthesized to make the final map. Area analysis of the map was done according to bioclimate subzones, and country. The integrated mapping procedures resulted in other maps of vegetation, topography, soils, landscapes, lake cover, substrate pH, and above-ground biomass. Results: The final map was published at 1:7 500 000 scale map. Within the Arctic (total area = 7.11 x 106 km 2), about 5.05 ?? 106 km2 is vegetated. The remainder is ice covered. The map legend generally portrays the zonal vegetation within each map polygon. About 26% of the vegetated area is erect shrublands, 18% peaty graminoid tundras, 13% mountain complexes, 12% barrens, 11% mineral graminoid tundras, 11% prostrate-shrub tundras, and 7% wetlands. Canada has by far the most terrain in the High Arctic mostly associated with abundant barren types and prostrate dwarf-shrub tundra, whereas Russia has the largest area in the Low Arctic, predominantly low-shrub tundra. Conclusions: The CAVM is the first vegetation map of an entire global biome at a comparable resolution. The consistent treatment of the vegetation across the circumpolar Arctic, abundant ancillary material, and digital database should promote the application to numerous land-use, and climate-change applications and will make updating the map relatively easy. ?? IAVS; Opulus Press.

Journal of Vegetation Science↗

USGS2010

Health evaluation of western arctic King Eiders ( Somateria spectabilis )

The western arctic population of King Eiders ( Somateria spectabilis ) has declined by >50% in recent years. A health assessment was conducted for adult King Eiders breeding on the north slope of Alaska, USA, to evaluate body condition ( n =90, 2002–2006) and baseline biochemical and hematologic values ( n =20–30, 2005–2006). Body condition for males and females was excellent. Total protein, calcium, alkaline phosphatase, amylase, and globulin were significantly higher in females than in males, likely because of differences in reproductive physiology. These baseline health data can be used to promote conservation of King Eiders and other closely related species of concern.

Journal of Wildlife Diseases↗

USGS2017

Analytical validation of a reverse transcriptase droplet digital PCR (RT-ddPCR) for quantitative detection of infectious hematopoietic necrosis virus

Infectious hematopoietic necrosis virus (IHNV) is an important pathogen of salmonid fishes. A validated universal reverse transcriptase quantitative PCR (RT-qPCR) assay that can quantify levels of IHNV in fish tissues has been previously reported. In the present study, we adapted the published set of IHNV primers and probe for use in a reverse-transcriptase droplet digital PCR (RT-ddPCR) assay for quantification of the virus in fish tissue samples. The RT-ddPCR and RT-qPCR assays detected 13 phylogenetically diverse IHNV strains, but neither assay produced detectable amplification when RNA from other fish viruses was used. The RT-ddPCR assay had a limit of detection (LOD) equating to 2.2 plaque forming units (PFU)/μl while the LOD for the RT-qPCR was 0.2 PFU/μl. Good agreement (69.4–100%) between assays was observed when used to detect IHNV RNA in cell culture supernatant and tissues from IHNV infected rainbow trout ( Oncorhynchus mykiss ) and arctic char ( Salvelinus alpinus ). Estimates of RNA copy number produced by the two assays were significantly correlated but the RT-qPCR consistently produced higher estimates than the RT-ddPCR. The analytical properties of the N gene RT-ddPCR test indicated that this method may be useful to assess IHNV RNA copy number for research and diagnostic purposes. Future work is needed to establish the within and between laboratory diagnostic performance of the RT-ddPCR assay.

Journal of Virological Methods↗

USGS2012

Patterns and controlling factors of species diversity in the Arctic Ocean

Aim The Arctic Ocean is one of the last near-pristine regions on Earth, and, although human activities are expected to impact on Arctic ecosystems, we know very little about baseline patterns of Arctic Ocean biodiversity. This paper aims to describe Arctic Ocean-wide patterns of benthic biodiversity and to explore factors related to the large-scale species diversity patterns. Location Arctic Ocean. Methods We used large ostracode and foraminiferal datasets to describe the biodiversity patterns and applied comprehensive ecological modelling to test the degree to which these patterns are potentially governed by environmental factors, such as temperature, productivity, seasonality, ice cover and others. To test environmental control of the observed diversity patterns, subsets of samples for which all environmental parameters were available were analysed with multiple regression and model averaging. Results Well-known negative latitudinal species diversity gradients (LSDGs) were found in metazoan Ostracoda, but the LSDGs were unimodal with an intermediate maximum with respect to latitude in protozoan foraminifera. Depth species diversity gradients were unimodal, with peaks in diversity shallower than those in other oceans. Our modelling results showed that several factors are significant predictors of diversity, but the significant predictors were different among shallow marine ostracodes, deep-sea ostracodes and deep-sea foraminifera. Main conclusions On the basis of these Arctic Ocean-wide comprehensive datasets, we document large-scale diversity patterns with respect to latitude and depth. Our modelling results suggest that the underlying mechanisms causing these species diversity patterns are unexpectedly complex. The environmental parameters of temperature, surface productivity, seasonality of productivity, salinity and ice cover can all play a role in shaping large-scale diversity patterns, but their relative importance may depend on the ecological preferences of taxa and the oceanographic context of regions. These results suggest that a multiplicity of variables appear to be related to community structure in this system.

Journal of Biogeography↗

USGS1993

Perinatal mortality in caribou from the Porcupine herd, Alaska

During the 1989 caribou ( Rangifer tarandus ) calving season on the Arctic National Wildlife Refuge, Alaska (USA), 61 calf carcasses were examined for cause of death and associated pathology. Dead calves were located by low-level aerial searches with two fixed-wing aircraft and a helicopter over high density calving areas between the Hulahula and Aichilik rivers. Primary diagnoses included emaciation (39%), malnutrition (8%), stillbirth (21%), trauma (16%), other primary causes (7%), and undetermined causes (8%). Twenty calves had contributory renal tubular degeneration. The findings indicate that factors contributing to nutritional deprivation in calves were the major cause of neonatal mortality; however, factors affecting stillbirth, abortion, or the urogenital system may have major effects on neonatal caribou and warrant further investigation.

Alaska↗

USGS2018

The black brant population is declining based on mark recapture

Annual survival and recruitment in black brant ( Branta bernicla nigricans ) have declined since the 1990s, yet aerial surveys of the global population have been stable or even increasing over the past decade. We used a combination of a Lincoln estimator based on harvest information and band recoveries, and marked‐unmarked ratios in bag checks in 1 harvest area in Mexico to estimate the number of adults in the population during 1992–2015. We produced weighted means from the 2 kinds of estimates for years in which we had data for both, with weights equal to the inverse of the variance of the individual estimates. We treated the black brant population as consisting of 2 subpopulations. One population consisted of breeding black brant on the Yukon‐Kuskokwim Delta (YKD), Alaska, USA, and the other consisted of Arctic (northern Alaska, western Canada, and eastern Russia) breeders, and nonbreeders and failed breeders from the YKD that underwent molt migration to the Arctic. For the global population estimates, we assessed potential bias due to differential marking and harvest of the 2 subpopulations, which was approximately 1%, probably because band recovery rates were similar for the 2 subpopulations. Population estimates declined from 229,980 (average for 1999–2002) to 161,504 (average for 2012–2015). Population estimates based on estimated harvest were variable but more stable in the later years of the study, when larger numbers of brant hunters were included in the sample. We suggest that the combination of Lincoln estimates and bag check data provides a reasonable and cost effective approach to monitoring the population.

Journal of Wildlife Management↗

USGS2013

Review: groundwater in Alaska (USA)

Groundwater in the US state of Alaska is critical to both humans and ecosystems. Interactions among physiography, ecology, geology, and current and past climate have largely determined the location and properties of aquifers as well as the timing and magnitude of fluxes to, from, and within the groundwater system. The climate ranges from maritime in the southern portion of the state to continental in the Interior, and arctic on the North Slope. During the Quaternary period, topography and rock type have combined with glacial and periglacial processes to develop the unconsolidated alluvial aquifers of Alaska and have resulted in highly heterogeneous hydrofacies. In addition, the long persistence of frozen ground, whether seasonal or permanent, greatly affects the distribution of aquifer recharge and discharge. Because of high runoff, a high proportion of groundwater use, and highly variable permeability controlled in part by permafrost and seasonally frozen ground, understanding groundwater/surface-water interactions and the effects of climate change is critical for understanding groundwater availability and the movement of natural and anthropogenic contaminants.

Alaska↗

USGS2020

Dynamics, variability, and change in seasonal precipitation reconstructions for North America

Cool and warm season precipitation totals have been reconstructed on a gridded basis for North America using 439 tree-ring chronologies correlated with December-April totals and 547 different chronologies correlated with May-July totals. These discrete seasonal predictor chronologies are not significantly correlated with the alternate season and the reconstructions calibrate at least 40% of the variance in both December-April and May-July precipitation totals over a large portion of North America for up to 2,000-years. Validation statistics computed on independent instrumental precipitation data from 1901-1927 indicate that the December-April reconstructions are reliable over most of the western and southern United States and northcentral Mexico, and the May-July estimates are valid over most of the United States, southwest Canada, and northeast Mexico. The strong continent wide El Niño/Southern Oscillation (ENSO) signal embedded in the cool season reconstructions, and the Arctic Oscillation signal registered by the warm season estimates, both faithfully reproduce the sign, intensity, and spatial patterns of these ocean-atmospheric influences on North American precipitation as recorded with instrumental data. The reconstructions are included in the North American Seasonal Precipitation Atlas (NASPA) and provide new insight into decadal droughts and pluvials. They indicate that the 16th century megadrought, the most severe and sustained North American drought of the past 500-years, was the combined result of three distinct seasonal droughts each bearing unique spatial patterns potentially associated with seasonal forcing from ENSO, the Arctic Oscillation, and the Atlantic Multidecadal Oscillation. Significant 200- to 500-year long trends toward increased precipitation have been detected in the cool and warm season reconstructions for eastern North America. These seasonal precipitation changes appear to be part of the positive moisture trend measured in other paleoclimate proxies for the East that began due to natural forcing before the industrial revolution and may have recently been enhanced by anthropogenic climate change.

Journal of Climate↗

USGS2014

Prevalence, transmission, and genetic diversity of blood parasites infecting tundra-nesting geese in Alaska

A total of 842 blood samples collected from five species of tundra-nesting geese in Alaska was screened for haemosporidian parasites using molecular techniques. Parasites of the genera Leucocytozoon Danilewsky, 1890, Haemoproteus Kruse, 1890, and Plasmodium Marchiafava and Celli, 1885 were detected in 169 (20%), 3 (<1%), and 0 (0%) samples, respectively. Occupancy modeling was used to estimate prevalence of Leucocytozoon parasites and assess variation relative to species, age, sex, geographic area, year, and decade. Species, age, and decade were identified as important in explaining differences in prevalence of Leucocytozoon parasites. Leucocytozoon parasites were detected in goslings sampled along the Arctic Coastal Plain using both historic and contemporary samples, which provided support for transmission in the North American Arctic. In contrast, lack of detection of Haemoproteus and Plasmodium parasites in goslings ( n = 238) provided evidence to suggest that the transmission of parasites of these genera may not occur among waterfowl using tundra habitats in Alaska, or alternatively, may only occur at low levels. Five haemosporidian genetic lineages shared among different species of geese sampled from two geographic areas were indicative of interspecies parasite transmission and supported broad parasite or vector distributions. However, identical Leucocytozoon and Haemoproteus lineages on public databases were limited to waterfowl hosts suggesting constraints in the range of parasite hosts.

Alaska↗

USGS1997

Effects of fish density and river fertilization on algal standing stocks, invertebrates communities, and fish production in an Arctic River

This study examined the relative importance of bottom-up and top-down controls of an arctic stream food web by simultaneous manipulation of the top predator and nutrient availability. We created a two-step trophic system (algae to insects) by removal of the top predator (Arctic grayling, Thymallus arcticus) in fertilized and control stream reaches. Fish abundance was also increased 10 times to examine the effect of high fish density on stream ecosystem dynamics and fish. We measured the response of epilithic algae, benthic and drifting insects, and fish to nutrient enrichment and to changes in fish density. Insect grazers had little effect on algae and fish had little effect on insects. In both the control and fertilized reaches, fish growth, energy storage, and reproductive response of females declined with increased fish density. Fish growth and energy storage were more closely correlated with per capita insect availability than with per capita algal standing stock

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2010

Variability of the seasonally integrated normalized difference vegetation index across the north slope of Alaska in the 1990s

The interannual variability and trend of above-ground photosynthetic activity of Arctic tundra vegetation in the 1990s is examined for the north slope region of Alaska, based on the seasonally integrated normalized difference vegetation index (SINDVI) derived from local area coverage (LAC) National Oceanic and Atmospheric Administration (NOAA) Advanced Very High Resolution Radiometer (AVHRR) data. Smaller SINDVI values occurred during the three years (1992-1994) following the volcanic eruption of Mt Pinatubo. Even after implementing corrections for this stratospheric aerosol effect and adjusting for changes in radiometric calibration coefficients, an apparent increasing trend of SINDVI in the 1990s is evident for the entire north slope. The most pronounced increase was observed for the foothills physiographical province.

Alaska↗

USGS2009

Estimating 3D variation in active-layer thickness beneath arctic streams using ground-penetrating radar

We acquired three-dimensional (3D) ground-penetrating radar (GPR) data across three stream sites on the North Slope, AK, in August 2005, to investigate the dependence of thaw depth on channel morphology. Data were migrated with mean velocities derived from multi-offset GPR profiles collected across a stream section within each of the 3D survey areas. GPR data interpretations from the alluvial-lined stream site illustrate greater thaw depths beneath riffle and gravel bar features relative to neighboring pool features. The peat-lined stream sites indicate the opposite; greater thaw depths beneath pools and shallower thaw beneath the connecting runs. Results provide detailed 3D geometry of active-layer thaw depths that can support hydrological studies seeking to quantify transport and biogeochemical processes that occur within the hyporheic zone.

Journal of Hydrology↗