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The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.
The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.
The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.
The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.
The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.
Effective ecological restoration requires empirical assessment to determine outcomes of projects, but conclusions regarding the effects of restoration treatments on the whole ecosystem remain rare. Control of invasive shrubs and trees in the genus Tamarix and associated riparian restoration in the American Southwest has been of interest to scientists and resource managers for decades; dozens of studies have reported highly variable outcomes of Tamarix control efforts, as measured by a range of response variables, temporal and spatial scales and monitoring strategies. We conducted a literature search and review, meta-analysis and vote count (comparison of numerical outcomes lacking reported variances and/or sample sizes) on published papers that quantitatively measured a variety of responses to control of Tamarix . From 96 publications obtained through a global search on terms related to Tamarix control, we found 52 publications suitable for a meta-analysis (n = 777 comparisons) and 63 publications suitable for two vote counts (n = 1,460 comparisons total; 622 comparisons reported as statistically significant) of response to Tamarix control. We estimated responses to control by treatment type (e.g. cut-stump treatment, burning, biocontrol) and ecosystem component (e.g. vegetation, fauna, fluvial processes). Finally, we compared results of the various synthesis methods to determine whether the increasingly stringent requirements for inclusion led to biased outcomes. Vegetation metrics, especially measures of Tamarix response, were the most commonly assessed. Ecosystem components other than vegetation, such as fauna, soils and hydrogeomorphic dynamics, were under-represented. The meta-analysis showed significantly positive responses by vegetation overall to biocontrol, herbicide and cut-stump treatments. This was primarily due to reduction of Tamarix cover; impacts on replacement vegetation were highly variable. We found concordance amongst our varied synthesis approaches, indicating that increased granularity from stricter quantitative techniques does not come at the cost of a biased sample. Overall, our results indicate that common control methods are generally effective for reducing Tamarix , but the indirect effects on other aspects of the ecosystem are variable and remain understudied. Given that this is a relatively well-studied invasive plant species, our results also illustrate the limitations of not only individual studies, but also of reviews for measuring the impact of invasive species control. We call on researchers to investigate the less commonly studied responses to Tamarix control and riparian restoration including the effects on fauna, soil and hydrogeomorphic characteristics.
European mouflon ( Ovis gmelini musimon ), the world's smallest wild sheep, have proliferated and degraded fragile native ecosystems in the Hawaiian Islands through browsing, bark stripping, and trampling, including native forests within Hawai‘i Volcanoes National Park (HAVO). HAVO resource managers initiated ungulate control efforts in the 469 km 2 Kahuku Unit after it was acquired in 2003. We tracked control effort and used aerial surveys in a 64.7 km 2 area from 2004 to 2017 and more intensive ground surveys and camera-trap monitoring to detect the last remaining animals within a 25.9 km 2 subunit after it was enclosed by fence in 2012. Aerial shooting yielded the most removals per unit effort (3.2 animals/ hour), resulting in 261 animals. However, ground-based methods yielded 4,607 removals overall, 3,038 of which resulted from assistance of volunteers. Ground shooting with dogs, intensive aerial shooting, ground sweeps, and forward-looking infrared (FLIR)-assisted shooting were necessary to find and remove the last remaining mouflon. The Judas technique, baiting, and trapping were not successful in attracting or detecting small numbers of remaining individuals. Effort expended to remove each mouflon increased nearly 15-fold during the last 3 yr of eradication effort from 2013 to 2016. Complementary active and passive monitoring techniques allowed us to track the effectiveness of control effort and reveal locations of small groups to staff. The effort and variety of methods required to eradicate mouflon from an enclosed unit of moderate size illustrates the difficulty of scaling up to entire populations of wild ungulates from unenclosed areas.
Use of point-count surveys is a popular method for collecting data on abundance and distribution of birds. However, analyses of such data often ignore potential differences in detection probability. We adapted a removal model to directly estimate detection probability during point-count surveys. The model assumes that singing frequency is a major factor influencing probability of detection when birds are surveyed using point counts. This may be appropriate for surveys in which most detections are by sound. The model requires counts to be divided into several time intervals. Point counts are often conducted for 10 min, where the number of birds recorded is divided into those first observed in the first 3 min, the subsequent 2 min, and the last 5 min. We developed a maximum-likelihood estimator for the detectability of birds recorded during counts divided into those intervals. This technique can easily be adapted to point counts divided into intervals of any length. We applied this method to unlimited-radius counts conducted in Great Smoky Mountains National Park. We used model selection criteria to identify whether detection probabilities varied among species, throughout the morning, throughout the season, and among different observers. We found differences in detection probability among species. Species that sing frequently such as Winter Wren ( Troglodytes troglodytes ) and Acadian Flycatcher ( Empidonax virescens ) had high detection probabilities (∼90%) and species that call infrequently such as Pileated Woodpecker ( Dryocopus pileatus ) had low detection probability (36%). We also found detection probabilities varied with the time of day for some species (e.g. thrushes) and between observers for other species. We used the same approach to estimate detection probability and density for a subset of the observations with limited-radius point counts.
Spatiotemporal causal inference methods are needed to detect the effect of interventions on indirectly measured epidemiological outcomes that go beyond studying spatiotemporal correlations. Chronic wasting disease (CWD) causes neurological degeneration and eventual death to white-tailed deer ( Odocoileus virginianus ) in Wisconsin. Targeted culling involves removing deer after traditional hunting seasons in areas with high CWD prevalence. The evaluation of the causal effects of targeted culling in the spread and growth of CWD is an important unresolved research and CWD management question that can guide surveillance efforts. Reaction–diffusion partial differential equations (PDEs) can be used to mechanistically model the underlying spatiotemporal dynamics of wildlife diseases, like CWD, allowing researchers to make inference about unobserved epidemiological quantities. These models indirectly regress spatiotemporal covariates on diffusion and growth rates parameterizing such PDEs, obtaining associational conclusions. In this work we develop an innovative method to obtain causal estimators for the effect of targeted culling interventions on CWD epidemiological processes using an inverse-probability-of-treatment-weighted technique by means of marginal structural models embedded in the PDE fitting process. Additionally we establish a novel scheme for sensitivity analysis under unmeasured confounder for testing the hypothesis of a significant causal effect in the indirectly measured epidemiological outcomes. Our methods can be broadly used to study the impact of spatiotemporal interventions and treatment exposures in the epidemiological evolution of infectious diseases that can help to inform future efforts to mitigate public health implications and wildlife disease burden.
Rationale Isotope ratio mass spectrometry (IRMS) and proton nuclear magnetic resonance ( 1 H NMR) spectroscopy are independent techniques for determining the isotope ratio R ( 13 C/ 12 C) in organic compounds. However, the lack of suitable reference materials has limited intercalibration of results from these methods. Methods Three high-purity calcium formate isotopic reference materials were developed, each ideal for accurate isotope ratio measurements by both 1 H NMR and isotope-ratio mass spectrometry (IRMS). For each material, R ( 13 C/ 12 C) was determined by 1 H NMR, and the relative isotope abundance ( δ 13 C VPDB-LSVEC ) by IRMS. The combined IRMS and NMR results were used to determine the R ( 13 C/ 12 C) value of Vienna Peedee belemnite (VPDB). Results The combined datasets yield a value for R ( 13 C/ 12 C) of 0.0111050 ± 0.0000047 ( k = 2) for VPDB, which is 6.7‰ lower than the commonly cited value of 0.011180, but similar to other recent determinations. These three calcium formate reference materials exhibit high accuracy across both analytical methods and provide robust tools for instrument calibration, method validation, and inter-laboratory comparison in carbon stable isotope ratio analysis. Conclusions An accurate R ( 13 C/ 12 C) value for VPDB strengthens the link between relative ( δ 13 C VPDB-LSVEC ) values from IRMS and R ( 13 C/ 12 C) isotope ratios from NMR and other techniques. These three calcium formate isotopic reference materials (USGS106, USGS107, and USGS108) are available from the US Geological Survey and provide reference materials for calibration, method validation, and inter-laboratory comparison in carbon isotope ratio analysis.
During the summers of 2008 and 2009 the USGS conducted bathymetric surveys from West Ship Island, Miss., to Dauphin Island, Ala., as part of the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility project. The survey area extended from the shoreline out to approximately 2 kilometers and included the adjacent passes (fig. 1). The bathymetry was primarily used to create a topo-bathymetric map and provide a base-level assessment of the seafloor following the 2005 hurricane season. Additionally, these data will be used in conjunction with other geophysical data (chirp and side scan sonar) to construct a comprehensive geological framework of the Mississippi Barrier Island Complex. The culmination of the geophysical surveys will provide baseline bathymetry necessary for scientists to define and interpret seafloor habitat for this area and for scientists to predict future geomorpholocial changes of the islands with respect to climate change, storm impact, and sea-level rise. Furthermore, these data provide information for feasibility of barrier island restoration, particularly in Camille Cut, and for the preservation of historical Fort Massachusetts. For more information refer to http://ngom.usgs.gov/gomsc/mscip/index.html. Since bathymetric surveys have often been conducted for navigational purposes, soundings have traditionally been referenced to a water level datum using tide gages and tide models. Bathymetric measurements referenced to a Global Positioning System (GPS) is a more accurate way of representing water depth and has been implemented in the acquisition and processing procedures for these datasets. Previous single-beam bathymetric studies performed at the USGS Center for Coastal and Marine Science have successfully referenced bathymetric measurements to GPS (DeWitt and others, 2007; Hansen 2008 and 2009). The 2008-2009 bathymetry surveys were conducted as a test to (1) develop acquisition and processing technology utilizing both single beam and swath bathymetry survey methods together, (2) reference both types of measurements to GPS rather than water level, and (3) compare the differences between methods in acquisition and processing. Results of the survey are explained in greater detail within this report. To acquire suitable coverage of the study area in a limited time frame, the seafloor-elevation survey was conducted using three techniques: single-beam bathymetry, interferometric swath bathymetry, and a walking kinematic survey of the island shorelines. All three techniques utilized GPS measurements. Implementation of these techniques was executed concurrently yet independently aboard two research vessels: the RV Survey Cat , a 26-foot (ft) shallow-draft Glacier Bay Coastal Runner, and the 50-ft RV G.K. Gilbert . A portable push buggy with a rigid antenna mount served as the platform for the kinematic shoreline survey. Data from each survey technique was post-processed and edited independently with proper inclusion of the differentially processed external navigation files. The x,y,z components from each method were then combined and the two survey years (2008 and 2009) were merged into one dataset. The 2008 bathymetry data were processed at the USGS Center for Coastal and Marine Science in St. Petersburg, Fla., and the 2009 bathymetry data were processed at the USGS Coastal and Marine Science Center located in Woods Hole, Mass. This report serves as an archive of the processed single beam and interferometric swath bathymetry, outlines the methodology, and reports the results. Data products herein include gridded and interpolated digital depth surfaces, and x,y,z data products for both single beam and interferometric swath bathymetry. Additional files include trackline maps, navigation files, geographic information system (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Scanned images of the handwritten FACS logs and digital FACS logs are also provided as PDF files. Refer to the Acronyms page for description of acronyms and abbreviations used in this report or hold the cursor over an acronym for a pop-up explanation. The USGS St. Petersburg Coastal and Marine Science Center assigns a unique identifier to each cruise or field activity. For example, 08CCT01 indicates that the data were collected in 2008 for the Coastal Change and Transport (CCT) study and the data were collected during the first (01) field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. See the digital FACS equipment log for details about the acquisition equipment used. Raw datasets are stored digitally at the USGS St. Petersburg Coastal and Marine Science Center and processed systematically using Novatel's GrafNav version 7.6, SANDS version 3.7, SEA SWATH plus version 3.06.04.03, CARIS HIPS AND SIPS version 3.6, and ESRI ArcGIS version 9.3.1. For more information on processing refer to the Equipment and Processing page. Chirp seismic data were also collected during these surveys and are archived separately.
Molecular detection techniques are powerful tools used in ecological applications ranging from diet analyses to pathogen surveillance. Research partnerships that use these tools often involve collaboration among professionals with expertise in field biology, laboratory techniques, quantitative modeling, wildlife disease, and natural resource management. However, in many cases, each of these collaborators lacks specific knowledge about the approaches, decisions, methods, and terminology used by their research partners, which can impede effective communication and act as a barrier to the efficient use of molecular data for ecological inferences and subsequent conservation decision making. We outline a collaborative framework to assist colleagues with diverse types of expertise to effectively translate their scientific and management needs to research partners from other specialties. The molecular techniques used to detect organisms will continue to advance both in sophistication and in the breadth of ecological applications. Our objective is to enable ecologists to harness the full utility of these methods by developing effective collaborative partnerships.
The techniques used in making discharge measurements at gaging stations are described in this report. Most of the report deals with the current-meter method of measuring discharge, because this is the principal method used in gaging streams. The use of portable weirs and flumes, floats, and volumetric tanks in measuring discharge are briefly described.
Measurements of the concentrations of chlorofluorocarbons (CFCs), tritium, and other environmental tracers can be used to calculate recharge ages of shallow groundwater and estimate rates of groundwater movement. Numerical simulation also provides quantitative estimates of flow rates, flow paths, and mixing properties of the groundwater system. The environmental tracer techniques and the hydraulic analyses each contribute to the understanding and quantification of the flow of shallow groundwater. However, when combined, the two methods provide feedback that improves the quantification of the flow system and provides insight into the processes that are the most uncertain. A case study near Locust Grove, Maryland, is used to investigate the utility of combining groundwater age dating, based on CFCs and tritium, and hydraulic analyses using numerical simulation techniques. The results of the feedback between an advective transport model and the estimates of groundwater ages determined by the CFCs improve a quantitative description of the system by refining the system conceptualization and estimating system parameters. The plausible system developed with this feedback between the advective flow model and the CFC ages is further tested using a solute transport simulation to reproduce the observed tritium distribution in the groundwater. The solute transport simulation corroborates the plausible system developed and also indicates that, for the system under investigation with the data obtained from 0.9-m-long (3-foot-long) well screens, the hydrodynamic dispersion is negligible. Together the two methods enable a coherent explanation of the flow paths and rates of movement while indicating weaknesses in the understanding of the system that will require future data collection and conceptual refinement of the groundwater system.
Non-native species have invaded most ecosystems and methods are needed to manage them, especially in locations with sensitive species where they cannot be easily extirpated. Gillnetting for invasive lake trout [ Salvelinus namaycush (Walbaum, 1792)] in Yellowstone Lake, Yellowstone National Park, USA began in 1995 and their carcasses are deposited into deep areas. This suppression method was recently supplemented by adding carcasses to shallow (< 20 m) spawning sites during the autumn spawning period to decrease dissolved oxygen through decomposition, suffocating lake trout embryos. We measured ammonium concentrations (shallow and deep sites), algal biomass, and ammonium uptake by phytoplankton and periphyton (shallow sites only) to investigate the degree to which carcasses caused bottom-up effects. Ammonium concentrations increased in autumn and were higher at deep sites than shallow sites. Algal biomass and ammonium uptake did not increase after adding carcasses, suggesting minimal effects. Periphyton biomass was 9 times higher than phytoplankton, but phytoplankton demanded 4.5 times more ammonium. Returning lake trout carcasses to deep areas of the lake may cause a second algal bloom. Assessing how novel management techniques alter the environment helps managers develop the most successful mitigation strategies that are effective without causing adverse effects to other portions of the ecosystem.
We evaluated the probability of detecting larval lampreys using different methods of backpack electrofishing in wadeable streams in the U.S. Pacific Northwest. Our primary objective was to compare capture of lampreys using electrofishing with standard settings for salmon and trout to settings specifically adapted for capture of lampreys. Field work consisted of removal sampling by means of backpack electrofishing in 19 sites in streams representing a broad range of conditions in the region. Captures of lampreys at these sites were analyzed with a modified removal-sampling model and Bayesian estimation to measure the relative odds of capture using the lamprey-specific settings compared with the standard salmonid settings. We found that the odds of capture were 2.66 (95% credible interval, 0.87–78.18) times greater for the lamprey-specific settings relative to standard salmonid settings. When estimates of capture probability were applied to estimating the probabilities of detection, we found high (>0.80) detectability when the actual number of lampreys in a site was greater than 10 individuals and effort was at least two passes of electrofishing, regardless of the settings used. Further work is needed to evaluate key assumptions in our approach, including the evaluation of individual-specific capture probabilities and population closure. For now our results suggest comparable results are possible for detection of lampreys by using backpack electrofishing with salmonid- or lamprey-specific settings.
Particle size may strongly influence the physical and chemical properties of a substance (e.g. its rheology, surface area, cation exchange capacity, solubility, etc.), and its measurement in rocks may yield geological information about ancient environments (sediment provenance, degree of metamorphism, degree of weathering, current directions, distance to shore, etc.). Therefore mineralogists, geologists, chemists, soil scientists, and others who deal with clay-size material would like to have a convenient method for measuring particle size distributions. Nano-size crystals generally are too fine to be measured by light microscopy. Laser scattering methods give only average particle sizes; therefore particle size can not be measured in a particular crystallographic direction. Also, the particles measured by laser techniques may be composed of several different minerals, and may be agglomerations of individual crystals. Measurement by electron and atomic force microscopy is tedious, expensive, and time consuming. It is difficult to measure more than a few hundred particles per sample by these methods. This many measurements, often taking several days of intensive effort, may yield an accurate mean size for a sample, but may be too few to determine an accurate distribution of sizes. Measurement of size distributions by X-ray diffraction (XRD) solves these shortcomings. An X-ray scan of a sample occurs automatically, taking a few minutes to a few hours. The resulting XRD peaks average diffraction effects from billions of individual nano-size crystals. The size that is measured by XRD may be related to the size of the individual crystals of the mineral in the sample, rather than to the size of particles formed from the agglomeration of these crystals. Therefore one can determine the size of a particular mineral in a mixture of minerals, and the sizes in a particular crystallographic direction of that mineral.
This research compared raw filtered waters (RFWs), XAD resin isolates (XAD-8 and XAD-4), and reverse osmosis (RO) isolates of several surface water samples from McDonalds Branch, a small freshwater fen in the New Jersey Pine Barrens (USA). RO and XAD-8 are two of the most common techniques used to isolate natural organic matter (NOM) for studies of composition and reactivity; therefore, it is important to understand how the isolates differ from bulk (unisolated) samples and from one another. Although, any comparison between the isolation methods needs to consider that XAD-8 is specifically designed to isolate the humic fraction, whereas RO concentrates a broad range of organic matter and is not specific to humics. The comparison included for all samples: weight average molecular weight ( M w ), number average molecular weight ( M n ), polydispersity ( ρ ), absorbance at 280 nm normalized to moles C ( ε 280 ) (RFW and isolates); and for isolates only: elemental analysis, % carbon distribution by 13 C NMR, and aqueous FTIR spectra. As expected, RO isolation gave higher yield of NOM than XAD-8, but also higher ash content, especially Si and S. M w decreased in the order: RO>XAD-8>RFW>XAD-4. The M w differences of isolates compared with RFW may be due to selective isolation (fractionation), or possibly in the case of RO to condensation or coagulation during isolation. 13 C NMR results were roughly similar for the two methods, but the XAD-8 isolate was slightly higher in ‘aromatic’ C and the RO isolate was slightly higher in heteroaliphatic and carbonyl C. Infrared spectra indicated a higher carboxyl content for the XAD-8 isolates and a higher ester:carboxyl ratio for the RO isolates. The spectroscopic data thus are consistent with selective isolation of more hydrophobic compounds by XAD-8, and also with potential ester hydrolysis during that process, although further study is needed to determine whether ester hydrolysis does indeed occur. Researchers choosing between XAD and RO isolation methods for NOM need to consider first the purpose of the isolation; i.e., whether humic fractionation is desirable. Beyond that, they should consider the C yield and ash content, as well as the potential for alteration of NOM by ester hydrolysis (XAD) or condensation/coagulation (RO). Furthermore, the RO and XAD methods produce different fractions or isolates so that researchers should be careful when comparing the compositions and reactivities of NOM samples isolated by these two different techniques.