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USGS2000

Effect of hibernation and reproductive status on body mass and condition of coastal brown bears

We investigated the effect of hibernation and reproductive status on changes in body mass and composition of adult female brown bears (Ursus arctos) on the Kenai Peninsula, Alaska. This information is fundamental to understanding nutritional ecology of wild brown bear populations. Six adult females handled in the fall and following spring (paired samples) lost 73 ± 22 kg (x̄ ± SD; 32 ± 10%) of fall body mass over 208 ± 19 days. Of this mass loss, 56 ± 22% (55 ± 22 kg) was lipid and 44 ± 22% (43 ± 21 kg) was lean body mass. Catabolism of lipid stores accounted for 88.4 ± 8.1% of the body energy used to meet maintenance demands. Overwinter differences in body composition of adult females assessed only once in either the fall (n = 21) or spring (n = 32) were similar to those of paired samples. Relative fatness of bears entering the den was positively related to the contribution of fat (%) to body mass (P < 0.01) and body energy (P < 0.01) losses during hibernation. Thus, relative fatness at the onset of fasting influences the relative proportion of lipid stores and lean body mass catabolized to meet protein and energy demands during hibernation. In the spring, lone females had greater body and lean masses than females with cubs of the year or yearlings. Lipid content was greatest in lone females in the fall. Studies using body mass and composition as indices of population health should consider season or reproductive class.

Journal of Wildlife Management↗

USGS2007

Potential strategies for recovery of lake whitefish and lake herring stocks in eastern Lake Erie

Lake Erie sustained large populations of ciscoes ( Salmonidae : Coregoninae ) 120 years ago. By the end of the 19 th century, abundance of lake whitefish ( Coregonus clupeaformis ) had declined drastically. By 1925, the lake herring (a cisco) population (Coregonus artedii) had collapsed, although a limited lake herring fishery persisted in the eastern basin until the 1950s. In the latter part of the 20 th century, the composition of the fish community changed as oligotrophication proceeded. Since 1984, a limited recovery of lake whitefish has occurred, however no recovery was evident for lake herring. Current ecological conditions in Lake Erie probably will not inhibit recovery of the coregonine species. Recovery of walleye ( Sander vitreus ) and efforts to rehabilitate the native lake trout ( Salvelinus namaycush ) in Lake Erie will probably assist recovery because these piscivores reduce populations of alewife ( Alosa psuedoharengus ) and rainbow smelt ( Osmerus mordax ), which inhibit reproductive success of coregonines. Although there are considerable spawning substrates available to coregonine species in eastern Lake Erie, eggs and fry would probably be displaced by storm surge from most shoals. Site selection for stocking or seeding of eggs should consider the reproductive life cycle of the stocked fish and suitable protection from storm events. Two potential sites in the eastern basin have been identified. Recommended management procedures, including commercial fisheries, are suggested to assist in recovery. Stocking in the eastern basin of Lake Erie is recommended for both species, as conditions are adequate and the native spawning population in the eastern basin is low. For lake herring, consideration should be given to match ecophenotypes as much as possible. Egg seeding is recommended. Egg seeding of lake whitefish should be considered initially, with fingerling or yearling stocking suggested if unsuccessful. Spawning stocks of whitefish in the western basin of Lake Erie could be utilized.

Journal of Great Lakes Research↗

USGS2014

Ecology and population status of trout-perch ( Percopsis omiscomaycus ) in western Lake Erie

Trout-perch Percopsis omiscomaycus is among the most abundant benthic species in Lake Erie, but comparatively little is known about its ecology. Although others have conducted extensive studies on trout-perch ecology, those efforts predated invasions of white perch Morone americana , Dreissena spp., Bythotrephes longimanus and round goby Neogobius melanostomus , suggesting the need to revisit past work. Trout-perch were sampled with bottom trawls at 56 sites during June and September 2010. We examined diets, fecundity, average annual mortality, sex ratio, and long-term population trends at sites sampled since 1961. Trout-perch abundance fluctuated periodically, with distinct shorter- (4-year) and longer-term (over period of 50 years) fluctuations. Males had higher average annual mortality than females. Both sexes were equally abundant at age 0, but females outnumbered males 4:1 by age 2. Diets of trout-perch were dominated by macroinvertebrates, particularly chironomids and Hexagenia sp. Size distributions of trout-perch eggs varied widely and exhibited multiple modes indicative of protracted batch spawning. A review of the few other studies of trout-perch revealed periodic fluctuations in sex ratio of adults, which in light of our evidence of periodicity in abundance suggests the potential for sex-ratio-mediated intrinsic population regulation. Despite the introduction of numerous invasive species in Lake Erie, trout-perch remain one of the most abundant benthic invertivores and the population is relatively stable.

Lake Erie↗

USGS2012

PhyloChipTM microarray comparison of sampling methods used for coral microbial ecology

Interest in coral microbial ecology has been increasing steadily over the last decade, yet standardized methods of sample collection still have not been defined. Two methods were compared for their ability to sample coral-associated microbial communities: tissue punches and foam swabs, the latter being less invasive and preferred by reef managers. Four colonies of star coral, Montastraea annularis , were sampled in the Dry Tortugas National Park (two healthy and two with white plague disease). The PhyloChip™ G3 microarray was used to assess microbial community structure of amplified 16S rRNA gene sequences. Samples clustered based on methodology rather than coral colony. Punch samples from healthy and diseased corals were distinct. All swab samples clustered closely together with the seawater control and did not group according to the health state of the corals. Although more microbial taxa were detected by the swab method, there is a much larger overlap between the water control and swab samples than punch samples, suggesting some of the additional diversity is due to contamination from water absorbed by the swab. While swabs are useful for noninvasive studies of the coral surface mucus layer, these results show that they are not optimal for studies of coral disease.

Dry Tortugas National Park↗

USGS2020

Dietary versus nondietary fatty acid profiles of lake trout ecotypes from Lake Superior and Great Bear Lake: Are fish really what they eat?

Fatty acids are well-established biomarkers used to characterize trophic ecology, food-web linkages, and the ecological niche of many different taxa. Most often, fatty acids that are examined include only those previously identified as “dietary” or “extended dietary” biomarkers. Fatty acids considered as nondietary biomarkers, however, represent numerous fatty acids that can be extracted. Some studies may include nondietary fatty acids (i.e., combined with dietary fatty acids), but do not specifically assess them, whereas in other studies, these data are discarded. In this study, we explored whether nondietary biomarker fatty acids can provide worthwhile information by assessing their ability to discriminate intraspecific diversity within and between lakes. Nondietary fatty acids used as biomarkers delineated variation among regions, among locations within a lake, and among ecotypes within a species. Physiological differences that arise from differences in energy processing can be adaptive and linked to habitat use by a species’ ecotype and likely explains why nondietary fatty acid biomarkers can be a relevant tool to delineate intraspecific diversity. Little is known about the nondietary-mediated differences in fatty acid composition, but our results showed that nondietary fatty acid biomarkers can be useful tool in identifying variation.

Lake Superior↗

USGS2024

Identifying the forage base and critical forage taxa for Chesapeake waterbirds

To effectively maximize the conservation value of management plans intended to capture ecosystem-wide health, it is essential to obtain an understanding of emergent patterns in dietary dynamics spanning many species. Chesapeake Bay, USA, is a critical ecosystem used annually by a diverse assortment of waterbird species, including several of conservation concern. However, the ecosystem is threatened by many ecological pressures driven largely by the dense human population of the surrounding region. These issues necessitate proactive monitoring and management efforts to track the health of ecosystems like the Chesapeake Bay. Such monitoring efforts of population dynamics require adequate data on the connections between trophic levels to understand how changes to the forage base might influence higher trophic levels, such as these diverse avian predators. However, we have historically lacked standardized quantitative data drawing these connections at the community level, as well as the relative importance of these taxa in the diet of such predators. We collated existing quantitative data on avian dietary composition to construct a database on the diets of 58 waterbird species that make use of the Chesapeake Bay. From this database, we quantified the relative importance of forage taxa to the diet of each waterbird species. Such data can enable managers to develop a comprehensive suite of forage taxa indicators whose abundance and distributions can be monitored as a proxy for ecosystem health. It is our goal that this database be harnessed as a tool to enable conservation practitioners to prioritize indicator taxa for monitoring purposes, contributing towards conservation plans that best address the health of the ecosystem at large.

Delaware, Maryland, Virginia↗

USGS2006

Bladder cancer mortality and private well use in New England: An ecological study

Study objective: To investigate the possible relation between bladder cancer mortality among white men and women and private water use in New England, USA, where rates have been persistently raised and use of private water supplies (wells) common. Design: Ecological study relating age adjusted cancer mortality rates for white men and women during 1985-1999 and proportion of persons using private water supplies in 1970. After regressing mortality rates on population density, Pearson correlation coefficients were computed between residual rates and the proportion of the population using private water supplies, using the state economic area as the unit of calculation. Calculations were conducted within each of 10 US regions. Setting: The 504 state economic areas of the contiguous United States. Participants: Mortality analysis of 11 cancer sites, with the focus on bladder cancer. Main results: After adjusting for the effect of population density, there was a statistically significant positive correlation between residual bladder cancer mortality rates and private water supply use among both men and women in New England (men, r=0.42; women, r=0.48) and New York/New Jersey (men, r=0.49; women, r=0.62). Conclusions: Use of well water from private sources, or a close correlate, may be an explanatory variable for the excess bladder cancer mortality in New England. Analytical studies are underway to clarify the relation between suspected water contaminants, particularly arsenic, and raised bladder cancer rates in northern New England.

Journal of Epidemiology and Community Health↗

USGS2010

Ecology of the brain trematode Euhaplorchis californiensis and its host, the California Killifish (Fundulus parvipinnis)

We describe the distribution and abundance of the brain-encysting trematode Euhaplorchis californiensis and its second intermediate host, the California killifish ( Fundulus parvipinnis ), in 3 estuaries in southern California and Baja California. We quantified the density of fish and metacercariae at 13–14 sites per estuary and dissected 375 killifish. Density (numbers and biomass) was examined at 3 spatial scales, i.e., small replicate sites, habitats, and entire estuaries. At those same scales, factors that might influence metacercaria prevalence, abundance, and aggregation in host individuals and populations were also examined. Metacercaria prevalence was 94–100% among the estuaries. Most fish were infected with 100s to 1,000s of E. californiensis metacercariae, with mean abundance generally increasing with host size. Although body condition of fish did not vary among sites or estuaries, the abundance of metacercariae varied significantly among sites, habitats, estuaries, and substantially with host size and gender. Metacercariae were modestly aggregated in killifish ( k > 1), with aggregation decreasing in larger hosts. Across the 3 estuaries, the total populations of killifish ranged from 9,000–12,000 individuals/ha and from 7–43 kg/ha. The component populations of E. californiensis metacercariae ranged from 78–200 million individuals/ha and from 0.1–0.3 kg/ha. Biomass of E. californiensis metacercariae constituted 0.5–1.7% of the killifish biomass in the estuaries. Our findings, in conjunction with previously documented effects of E. californiensis , suggest a strong influence of this parasite on the size, distribution, biomass, and abundance of its killifish host.

Journal of Parasitology↗

USGS2017

Estimating occurrence and detection probabilities for stream-breeding salamanders in the Gulf Coastal Plain

Large gaps exist in our knowledge of the ecology of stream-breeding plethodontid salamanders in the Gulf Coastal Plain. Data describing where these salamanders are likely to occur along environmental gradients, as well as their likelihood of detection, are important for the prevention and management of amphibian declines. We used presence/absence data from leaf litter bag surveys and a hierarchical Bayesian multispecies single-season occupancy model to estimate the occurrence of five species of plethodontids across reaches in headwater streams in the Gulf Coastal Plain. Average detection probabilities were high (range = 0.432–0.942) and unaffected by sampling covariates specific to the use of litter bags (i.e., bag submergence, sampling season, in-stream cover). Estimates of occurrence probabilities differed substantially between species (range = 0.092–0.703) and were influenced by the size of the upstream drainage area and by the maximum proportion of the reach that dried. The effects of these two factors were not equivalent across species. Our results demonstrate that hierarchical multispecies models successfully estimate occurrence parameters for both rare and common stream-breeding plethodontids. The resulting models clarify how species are distributed within stream networks, and they provide baseline values that will be useful in evaluating the conservation statuses of plethodontid species within lotic systems in the Gulf Coastal Plain.

Journal of Herpetology↗

USGS2021

Stopover ecology of red knots in southwestern James Bay during southbound migration

Many shorebirds rely on small numbers of staging sites during long annual migrations. Numerous shorebird species are declining and understanding the importance of these staging sites is important for successful conservation. We surveyed endangered rufa red knots ( Calidris canutus rufa ) staging in James Bay, Ontario, Canada, during southbound migration in 2017 and 2018. We used mark‐resight data and count data in an integrated Bayesian analysis to quantify migration phenology, estimate passage population size, and model the age structure of the stopover population. Many adult red knots arrived in James Bay in a single wave in early August in 2017, whereas adult red knots arrived in multiple smaller waves in July and mid‐August in 2018. These waves may correspond with breeding phenology where more red knots bred successfully and arrived in one large event in 2017 and the higher number of earlier arrivals in July 2018 may have been failed breeders. We included a binomial generalized linear model in the integrated analysis to estimate that 20% and 10% of staging red knots were juveniles in 2017 and 2018, respectively. In future applications, this method could provide a metric to assess breeding performance and develop our understanding of its role in population declines. Overall, we estimated that up to 23% of the estimated rufa red knot population staged in southwestern James Bay for an average of 10–12 days. The region is a key staging site for endangered red knots and could be included in conservation planning.

James Bay↗

USGS2014

Spatiotemporal associations of reservoir nutrient characteristics and the invasive, harmful alga Prymnesium parvum in West Texas

Golden alga ( Prymnesium parvum ) is a harmful alga that has caused ecological and economic harm in freshwater and marine systems worldwide. In inland systems of North America, toxic blooms have nearly eliminated fish populations in some systems. Modifying nutrient profiles through alterations to land or water use may be a viable alternative for golden alga control in reservoirs. The main objective of this study was to improve our understanding of the nutrient dynamics that influence golden alga bloom formation and toxicity in west Texas reservoirs. We examined eight sites in the Upper Colorado River basin, Texas: three impacted reservoirs that have experienced repeated golden alga blooms; two reference reservoirs where golden alga is present but nontoxic; and three confluence sites downstream of the impacted and reference sites. Total, inorganic, and organic nitrogen and phosphorus and their ratios were quantified monthly along with golden alga abundance and ichthyotoxicity between December 2010 and July 2011. Blooms persisted for several months at the impacted sites, which were characterized by high organic nitrogen and low inorganic nitrogen. At impacted sites, abundance was positively associated with inorganic phosphorus and bloom termination coincided with increases in inorganic nitrogen and decreases in inorganic phosphorus in late spring. Management of both inorganic and organic forms of nutrients may create conditions in reservoirs unfavorable to golden alga.

Journal of the American Water Resources Associatio↗

USGS2021

Gray wolf (Canis lupus) predation patterns following recent recolonization in a multi-predator, multi-prey system

Predator–prey interactions are among the most fundamental of ecological relationships. Recolonizing gray wolf ( Canis lupus Linnaeus, 1758) populations present new challenges for wildlife management in multi-prey, multi-carnivore systems. We documented diet composition and kill rates for wolves in a recently recolonized area over winter and summer seasons (2014–2015). Elk ( Cervus canadensis Erxleben, 1777) were the primary ungulate prey (63%) located at wolf kill sites. Deer (mule deer ( Odocoileus hemionus (Rafinesque, 1817)) and white-tailed deer ( Odocoileus virginianus (Zimmermann, 1780))) were less prevalent than elk in wolf diets, but the amount of deer in diets (40%–50%) varied by pack and season. Juvenile elk were the most prevalent class of prey in wolf diets during summer (63.3%) and winter (36.3%), with adult elk (32.5%) observed nearly as often as juveniles in winter. Kill rates varied by season, with rates 2.3 times higher in summer (mean = 3.5 ungulates/week per pack) than winter (mean = 1.5 ungulates/week per pack), consistent with increased availability and use of neonate prey. Prey biomass acquisition did not vary by pack or season (summer = 243 kg/week per pack; winter = 182 kg/week per pack). Our study quantified predation patterns for a recolonizing wolf population, and patterns that we documented were similar to other multi-prey systems in North America.

Oregon↗

USGS2002

Sampling effort affects multivariate comparisons of stream assemblages

Multivariate analyses are used widely for determining patterns of assemblage structure, inferring species–environment relationships and assessing human impacts on ecosystems. The estimation of ecological patterns often depends on sampling effort, so the degree to which sampling effort affects the outcome of multivariate analyses is a concern. We examined the effect of sampling effort on site and group separation, which was measured using a mean similarity method. Two similarity measures, the Jaccard Coefficient and Bray–Curtis Index were investigated with 1 benthic macroinvertebrate and 2 fish data sets. Site separation was significantly improved with increased sampling effort because the similarity between replicate samples of a site increased more rapidly than between sites. Similarly, the faster increase in similarity between sites of the same group than between sites of different groups caused clearer separation between groups. The strength of site and group separation completely stabilized only when the mean similarity between replicates reached 1. These results are applicable to commonly used multivariate techniques such as cluster analysis and ordination because these multivariate techniques start with a similarity matrix. Completely stable outcomes of multivariate analyses are not feasible. Instead, we suggest 2 criteria for estimating the stability of multivariate analyses of assemblage data: 1) mean within-site similarity across all sites compared, indicating sample representativeness, and 2) the SD of within-site similarity across sites, measuring sample comparability.

Journal of the North American Benthological Societ↗

USGS2025

Reconciling scale using the Resist-Accept-Direct (RAD) Framework to improve management of woody encroachment in grasslands

Implementing strategies to navigate large-scale ecological transitions in grasslands is one of this century's greatest conservation challenges. In the US Great Plains, managing areas impacted by woody transitions have been reactive, short-lived, costly, and ineffective. Along with current technological innovation in rangeland monitoring, the promise of early warning science is to provide managers with sufficient time to be better prepared for novel signals of ecological change. Combining the science of early warning signals and frameworks such as the Resist – Accept – Direct (RAD) can provide land managers with guidelines to identify proactive strategies when facing ecological change. Using this approach, we found that opportunities to resist woody transitions decreased from 84 % to 60 % between 1990 and 2020 over the entire biome but remained highest in the northern and western Great Plains, which contributes to large scale conservation targets. These are key areas to prioritize resist opportunities. In contrast, 11 % of the biome exhibited early warning transition signals across all hierarchical scales by 2020, a fourfold increase since 1990. Lastly by 2020, 30 % of the biome exhibited early warning signals across multiple but not all scales. Here, efforts may be more effective when management is directed to conserve fragmented grassland legacies within a woody-dominated matrix and avoid large-scale monocultures of problematic encroaching woody species. Our multi-scale study indicates that 1) anchoring to the last remaining grassland core areas with no early warning of transitions and 2) strategically investing in these intact grasslands may provide the best results for grassland conservation.

Great Plains↗

USGS2004

Habitat use and spatial structure of a barking frog (Eleutherodactylus augusti) population in southeastern Arizona

Barking Frogs ( Eleutherodactylus augusti ) are the northernmost ranging member of the large tropical family Leptodactylidae. We investigated the ecology of this saxicolous species at the northern edge of its range in a canyon in southern Arizona. We captured 54 frogs on discontinuous rock outcrops; eight of nine females and 39 of 45 males were on limestone outcrops. The remaining frogs were closer to limestone outcrops by more than 200 m than would be expected if they were distributed randomly with respect to limestone formations. Seven of 10 frogs radio-tracked had core home ranges (50% fixed kernel) from 94 to 100% on limestone; the other three frogs did not have any part of their home range on limestone outcrops. During five years of mark-recapture efforts, no frogs were found on a different outcrop from the one where they were originally captured; no radio-tracked frogs moved between outcrops during the breeding season. We estimated that four to 20 Barking Frogs occupied each outcrop; these groups probably are connected primarily by juvenile dispersal. As an organism living at the edge of its range, Barking Frogs in Arizona may rely heavily on extensive underground areas such as those found in limestone to protect them from a physiologically challenging environment. To manage for the persistence of Barking Frogs in southern Arizona, we must identify and protect habitat patches and movement pathways among them.

Arizona↗

USGS2013

Cost-effectiveness analysis of sandhill crane habitat management

Invasive species often threaten native wildlife populations and strain the budgets of agencies charged with wildlife management. We demonstrate the potential of cost-effectiveness analysis to improve the efficiency and value of efforts to enhance sandhill crane ( Grus canadensis ) roosting habitat. We focus on the central Platte River in Nebraska (USA), a region of international ecological importance for migrating avian species including sandhill cranes. Cost-effectiveness analysis is a valuation process designed to compare alternative actions based on the cost of achieving a pre-determined objective. We estimated costs for removal of invasive vegetation using geographic information system simulations and calculated benefits as the increase in area of sandhill crane roosting habitat. We generated cost effectiveness values for removing invasive vegetation on 7 land parcels and for the entire central Platte River to compare the cost-effectiveness of management at specific sites and for the central Platte River landscape. Median cost effectiveness values for the 7 land parcels evaluated suggest that costs for creating 1 additional hectare of sandhill crane roosting habitat totaled US $1,595. By contrast, we found that creating an additional hectare of sandhill crane roosting habitat could cost as much as US $12,010 for some areas in the central Platte River, indicating substantial cost savings can be achieved by using a cost effectiveness analysis to target specific land parcels for management. Cost-effectiveness analysis, used in conjunction with geographic information systems, can provide decision-makers with a new tool for identifying the most economically efficient allocation of resources to achieve habitat management goals.

Nebraska↗

USGS2014

Associations between water physicochemistry and Prymnesium parvum presence, abundance, and toxicity in west Texas reservoirs

Toxic blooms of golden alga ( Prymnesium parvum ) have caused substantial ecological and economic harm in freshwater and marine systems throughout the world. In North America, toxic blooms have impacted freshwater systems including large reservoirs. Management of water chemistry is one proposed option for golden alga control in these systems. The main objective of this study was to assess physicochemical characteristics of water that influence golden alga presence, abundance, and toxicity in the Upper Colorado River basin (UCR) in Texas. The UCR contains reservoirs that have experienced repeated blooms and other reservoirs where golden alga is present but has not been toxic. We quantified golden alga abundance (hemocytometer counts), ichthyotoxicity (bioassay), and water chemistry (surface grab samples) at three impacted reservoirs on the Colorado River; two reference reservoirs on the Concho River; and three sites at the confluence of these rivers. Sampling occurred monthly from January 2010 to July 2011. Impacted sites were characterized by higher specific conductance, calcium and magnesium hardness, and fluoride than reference and confluence sites. At impacted sites, golden alga abundance and toxicity were positively associated with salinity-related variables and blooms peaked at ~10°C and generally did not occur above 20°C. Overall, these findings suggest management of land and water use to reduce hardness or salinity could produce unfavorable conditions for golden alga.

Journal of the American Water Resources Associatio↗

USGS2002

Population dynamics of tule elk at point Reyes National Seashore, California

The presence of locally abundant wildlife raises questions about natural regulation and ecological consequences of overpopulation. We sought to establish precise information about population size, structure, and productivity to examine the role of natural regulation in a closed tule elk ( Cervus elaphus nannodes ) population at Point Reyes National Seashore, California, USA. We estimated an instantaneous exponential growth rate of 0.19 with an adjusted R 2 = 0.98 during 1998, 20 years after the elk were introduced. We estimated annual survival for adult cows of nearly 0.95. Calf survival from birth through the rut ending during October-November was 0.85. Male calves exhibited higher mortality than female calves. Cow mortality was associated with the calving season. We measured a 42% increase in cow:calf density from 0.733 ha -1 to 1.043 ha -1 during 1996-1998. We observed a density-correlated reduction in the rate of increase and in the cow:call ratios prior to high precipitation El Niño Southern Oscillation years, 1993, 1996, and 1997, precipitation >1.23 m year -1 . Given the high population growth rate and model evaluation of management scenarios, park managers will need to use a suite of approaches, such as contraception and removal, to maintain the elk population at levels at or near the closed-range carrying capacity for years between El Niño events.

California↗