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USGS2020

Salinity and inundation effects on productivity of brackish tidal marsh plants in the San Francisco Bay-Delta Estuary

Plant productivity is central to numerous ecosystem functions in tidal wetlands. We examined how productivity of brackish marsh plants in northern California responded to abiotic stress gradients of inundation and salinity using two experimental approaches. In a greenhouse study with varying salinity, shoot production and biomass of Juncus balticus , Schoenoplectus acutus and S. americanus all declined monotonically with higher salinity, with evidence of differences in sensitivity among species by their varied functional responses. Salinity also negatively affected fecundity for the one species ( S. americanus ) that produced enough inflorescences during the experiment for analysis. In a field manipulation of inundation and initial pore water salinity, total end-of-season biomass and other metrics of growth in the high marsh species, J. balticus , had unimodal relationships with inundation. Root production tended to be greater strongly impacted by greater inundation than shoot production. The salinity treatment quickly dissipated for treatments that were flooded more frequently but persisted at a higher marsh elevation where it suppressed plant growth. These results suggest that both increased flooding and salinity associated with climate change and sea-level rise may negatively impact productivity of brackish marsh species, but with variable effects by species and stressor.

California↗

USGS2007

Lack of size selectivity for paddlefish captured in hobbled gillnets

A commercial fishery for paddlefish Polyodon spathula caviar exists in Kentucky Lake, a reservoir on the lower Tennessee River. A 152-mm (bar-measure) minimum mesh size restriction on entanglement gear was enacted in 2002 and the minimum size limit was increased to 864 mm eye-fork length to reduce the possibility of recruitment overfishing. Paddlefish were sampled in 2003-2004 using experimental monofilament gillnets with panels of 89, 102, 127, 152, 178, and 203-mm meshes and the efficacy of the mesh size restriction was evaluated. Following the standards of commercial gear used in that fishery, nets were "hobbled" (i.e., 128 m ?? 3.6 m nets were tied down to 2.4 m; 91 m ?? 9.1 m nets were tied down to 7.6 m). The mean lengths of paddlefish (Ntotal = 576 fish) captured in each mesh were similar among most meshes and bycatch rates of sublegal fish did not vary with mesh size. Selectivity curves could not be modeled because the mean and modal lengths of fish captured in each mesh did not increase with mesh size. Ratios of fish girth to mesh perimeter (G:P) for individual fish were often less than 1.0 as a result of the largest meshes capturing small paddlefish. It is unclear whether lack of size selectivity for paddlefish was because the gillnets were hobbled, the unique morphology of paddlefish, or the fact that they swim with their mouths agape when filter feeding. The lack of size selectivity by hobbled gillnets fished in Kentucky Lake means that managers cannot influence the size of paddlefish captured by commercial gillnet gear by changing minimum mesh size regulations. ?? 2006 Elsevier B.V. All rights reserved.

Fisheries Research↗

USGS1999

Influence of bacterial kidney disease on smoltification in salmonids: Is it a case of double jeopardy?

We investigated the effects of a chronic, progressive infection with Renibacterium salmoninarum (Rs), the causative agent of bacterial kidney disease (BKD), on selected aspects of smoltification in yearling juvenile spring chinook salmon (Oncorhynchus tshawytscha). After experimentally infecting fish with Rs using an immersion challenge, we sampled them every two weeks to monitor changes in gill Na+, K+-ATPase (ATPase), cortisol, infection level, mortality, growth, and other stress-related physiological factors during the normal time of parr-smolt transformation in fresh water (i.e., from winter to spring). A progressively worsening infection with Rs did not alter the normal changes in gill ATPase and condition factor associated with smoltification in juvenile chinook salmon. The infection did, however, lead to elevated levels of plasma cortisol and lactate and depressed levels of plasma glucose, indicating that the disease is stressful during the later stages. A dramatic proliferation of BKD was associated with maximal responses of indicators of smoltification, suggesting that the process of smoltification itself can trigger outbreaks of disease. Our results suggest mechanisms that probably influence the reported inability of Rs-infected fish to successfully adapt to sea water.

Aquaculture↗

USGS2025

Laboratory transmission of adult salmon enteritis and associated pathogens in juvenile Chinook salmon ( Oncorhynchus tshawytscha )

Adult salmon enteritis (ASE), characterised by severe ulcerative enteritis, has been linked to prespawn mortality (PSM) in spring Chinook salmon ( Oncorhynchus tshawytscha ) in certain rivers in Oregon, USA. Catastrophic losses of spring Chinook salmon have resulted from PSM, a significant threat to their population stability. Understanding the causes of ASE is therefore critical for mitigating PSM and supporting conservation. This study investigates the potential infectious aetiology of ASE using a juvenile Chinook salmon model. Fish were immunocompromised with dexamethasone implants, fasted, and exposed to intestinal tissues from ASE-affected adult Chinook. Histopathology of recipient fish revealed mid-intestinal lesions consistent with ASE. The microsporidium Enterocytozoon schreckii , which is observed in ASE-affected adults from rivers, was transmitted for the first time to juvenile Chinook Salmon, making E. schreckii a potential new pathogen of juvenile salmon. Additionally, intranuclear inclusions were identified in enterocytes by histopathology and viral particles were detected by electron microscopy in recipient fish. The study demonstrates that intestinal lesions consistent with ASE can be experimentally induced in juvenile Chinook salmon through oral exposure to infected tissues, supporting an infectious aetiology. Further research is needed to isolate specific pathogens, including viruses and E. schreckii , and to elucidate their roles in ASE development.

Oregon↗

USGS2012

Impact of wildfire and slope aspect on soil temperature in a mountainous environment

Soil temperature changes after landscape disturbance impact hydrology, ecology, and geomorphology. This study used field measurements to examine wildfire and aspect effects on soil temperatures. Combustion of the litter and duff layers on north-facing slopes removed pre-fire aspect-driven soil temperature controls. Wildfire is one of the most significant disturbances in mountainous landscapes and can affect soil temperature, which can in turn impact ecologic and geomorphologic processes. This study measured the temperature in near-surface soil (i.e., top 30 cm) during the first summer after a wildfire. In mountainous environments, aspect can also affect soil temperature, so north- vs. south-facing aspects were compared using a fully factorial experimental design to explore the effects of both wildfire and aspect on soil temperature. The data showed major wildfire impacts on soil temperatures on north-facing aspects (unburned ∼4–5°C cooler, on average) but little impact on south-facing aspects. Differences in soil temperatures between north-facing and south-facing unburned aspects (north ∼5°C cooler, on average) were also observed. The data led to the conclusion that, for this field site during the summer period, the forest canopy and litter and duff layers on north-facing slopes (when unburned) substantially decreased mean soil temperatures and temperature variability. The sparse trees on south-facing slopes caused little to no difference in soil temperatures following wildfire in south-facing soils for unburned compared with burned conditions. The results indicate that wildfire can reduce or even remove aspect impacts on soil temperature by combusting the forest canopy and litter and duff layers, which then homogenizes soil temperatures across the landscape.

Vadose Zone Journal↗

USGS1998

Acid-neutralizing potential of minerals in intrusive rocks of the Boulder batholith in northern Jefferson County, Montana

Experimental studies show that fresh granitic rocks of the Boulder batholith in the Boulder River headwaters near Basin, Montana have significant acid-neutralizing potential and are capable of neutralizing acidic water derived from metal-mining related wastes or mine workings. Laboratory studies show that in addition to the acidneutralizing potential (ANP) of minor amounts of calcite in these rocks, biotite, tremolite, and feldspars will contribute significantly to long-term ANP. We produced 0.45 micrometer-filtered acidic (pH = 2.95) leachate for use in these ANP experiments by exposing metal-mining related wastes to deionized water in a waste:leachate ratio of 1:20. We then exposed these leachates to finely-ground and sized fractions of batholith rocks, and some of their mineral fractions for extended and repeated periods, for which results are reported here. The intent was to understand what reactions of metal-rich acidic water and fresh igneous rocks would produce. The reactions between the acidic leachates and the bulk rocks and mineral fractions are complex. Factors such as precipitation of phases like Fe-hydroxides and Alhydroxides and the balance between dissolved cations and anions that are sulfate dominated complicate analysis of the results. Research by others of acid neutralization by biotite and tremolite attributed a rise in pH to proton (H+) adsorption in sites vacated by K, Mg, and Ca. Destruction of the silicate framework and liberation of associated structural hydroxyl ions may contribute to ANP. Studies by others have indicated that the conversion of biotite to a vermiculite-type structure by removal of K at a pH of 4 consumes about six protons for every mole of biotite, but at a pH of 3 there is pronounced dissolution of the tetrahedral lattice. The ANP of fresh granitic rocks is much higher than anticipated. The three bulk Boulder igneous rock samples studied have minimum ANP equivalent to about 10-14 weight percent calcite. This ANP is in addition to that provided by the 0.36-1.4 weight percent calcite present in these samples. The total rock ANP is thus equivalent to that of many sedimentary rocks that are generally believed to be among the most efficient for attenuation of acidic waters. The long-term ANP contributed by biotite, tremolite, feldspars, and possibly unidentified minerals in these rocks, as well as calcite, are all important with regard to their natural remediation of degraded water quality originating from Fe-sulfide rich mineral deposits and the associated mine wastes and acid-mine drainage water.

Montana↗

USGS2007

Body size affects the predatory interactions between introduced American Bullfrogs (Rana catesbeiana) and native anurans in China: An experimental study

Introduced American Bullfrogs (Rana catesbeiana) have established breeding populations in several provinces in China since their introduction in 1959. Although Bullfrogs are viewed as a potentially important predator of Chinese native anurans, their impacts in the field are difficult to quantify. We used two experiments to examine factors likely to mediate Bullfrog predation on native anurans. First, we examined effects of Bullfrog size and sex on daily consumption of a common Chinese native (Rana limnocharis). Second, we examined whether Bullfrogs consumed similar proportions of four Chinese natives: Black-Spotted Pond Frog (Rana nigromaculata), Green Pond Frog (Rana plancyi plancyi), Rice Frog (R. limnocharis), and Zhoushan Toad (Bufo bufo gargarizans). We found that larger Rana catesbeiana consumed more R. limnocharis per day than did smaller R. catesbeiana, and that daily consumption of R. limnocharis was positively related to R. catesbeiana body size. When provided with adults of four anurans that differed significantly in body size, R. catesbeiana consumed more individuals of the smallest species (R. limnocharis). However, when provided with similarly sized juveniles of the same four species, R. catesbeiana did not consume any species more than expected by chance. Our results suggest that body size plays an important role in the predatory interactions between R. catesbeiana and Chinese native anurans and that, other things being equal, smaller species and individuals are at greater risk of predation by R. catesbeiana. Copyright 2007 Society for the Study of Amphibians and Reptiles.

Journal of Herpetology↗

USGS2000

Quantifying precambrian crustal extraction: The root is the answer

We use two different methods to estimate the total amount of continental crust that was extracted by the end of the Archean and the Proterozoic. The first method uses the sum of the seismic thickness of the crust, the eroded thickness of the crust, and the trapped melt within the lithospheric root to estimate the total crustal volume. This summation method yields an average equivalent thickness of Archean crust of 49±6 km and an average equivalent thickness of Proterozoic crust of 48± 9 km. Between 7 and 9% of this crust never reached the surface, but remained within the continental root as congealed, iron-rich komatiitic melt. The second method uses experimental models of melting, mantle xenolith compositions, and corrected lithospheric thickness to estimate the amount of crust extracted through time. This melt column method reveals that the average equivalent thickness of Archean crust was 65±6 km, and the average equivalent thickness of Early Proterozoic crust was 60±7 km. It is likely that some of this crust remained trapped within the lithospheric root. The discrepancy between the two estimates is attributed to uncertainties in estimates of the amount of trapped, congealed melt, overall crustal erosion, and crustal recycling. Overall, we find that between 29 and 45% of continental crust was extracted by the end of the Archean, most likely by 2.7 Ga. Between 51 and 79% of continental crust was extracted by the end of the Early Proterozoic, most likely by 1.8–2.0 Ga. Our results are most consistent with geochemical models that call upon moderate amounts of recycling of early extracted continental crust coupled with continuing crustal growth (e.g. McLennan, S.M., Taylor, S.R., 1982. Geochemical constraints on the growth of the continental crust. Journal of Geology, 90, 347–361; Veizer, J., Jansen, S.L., 1985. Basement and sedimentary recycling — 2: time dimension to global tectonics. Journal of Geology 93(6), 625–643). Trapped, congealed, iron-rich melt within the lithospheric root may represent some of the iron that is ‘missing’ from the lower crust. The lower crust within Archean cratons may also have an unexpectedly low iron content because it was extracted from more primitive, undepleted mantle.

Tectonophysics↗

USGS2003

A comparison of visual prey detection among species of piscivorous salmonids: Effects of light and low turbidities

Differences in reaction distance to prey fish by piscivorous salmonids can alter predator–prey interactions under different visual conditions. We compared reaction distances of three piscivorous salmonids commonly found in western lakes: cutthroat trout, Oncorhynchus clarki utah , rainbow trout, O. mykiss , and the nonnative lake char, Salvelinus namaycush . Reaction distances to salmonid prey were measured as functions of light and turbidity in a controlled laboratory setting. In addition, predation rates and swimming speeds of lake char preying on juvenile cutthroat trout were measured experimentally under a range of light levels. Reaction distances for cutthroat trout and rainbow trout increased rapidly as light levels increased, reaching relatively constant reaction distances at higher light levels. Reaction distances for lake char were similar to cutthroat trout and rainbow trout at the lower light levels; however, lake char reaction distances continued to increase with increasing light intensity to asymptote at distances 65% higher than those for both cutthroat and rainbow trout. Predation rates by lake char were low for the darkest light levels, increased rapidly under low light levels (0.50–0.75 lx), and then declined to an intermediate rate at all higher light levels. Swimming speeds by lake char also increased rapidly from extremely low light conditions to a peak and declined to an intermediate level at light levels above 1.00 lx. These results suggest that, above the saturation intensity threshold, piscivorous lake char react to fish prey at greater distances than do cutthroat trout and rainbow trout. These differences may help explain the decline of native trout following the introductions of nonnative lake char in lakes and reservoirs of western North America.

Environmental Biology of Fishes↗

USGS2011

2-D inner-shelf current observations from a single VHF WEllen RAdar (WERA) station

The majority of High Frequency (HF) radars used worldwide operate at medium to high frequencies (8 to 30 MHz) providing spatial resolutions ranging from 3 to 1.5 km and ranges from 150 to 50 km. This paper presents results from the deployment of a single Very High Frequency (VHF, 48 MHz) WEllen RAdar (WERA) radar with spatial resolution of 150 m and range 10-15 km, used in the nearshore off Cape Hatteras, NC, USA. It consisted of a linear array of 12 antennas operating in beam forming mode. Radial velocities were estimated from radar backscatter for a variety of wind and nearshore wave conditions. A methodology similar to that used for converting acoustically derived beam velocities to an orthogonal system is presented for obtaining 2-D current fields from a single station. The accuracy of the VHF radar-derived radial velocities is examined using a new statistical technique that evaluates the system over the range of measured velocities. The VHF radar velocities showed a bias of 3 to 7 cm/s over the experimental period explainable by the differences in radar penetration and in-situ measurement height. The 2-D current field shows good agreement with the in-situ measurements. Deviations and inaccuracies are well explained by the geometric dilution analysis.

North Carolina↗

USGS2010

Effects of High-Flow Experiments from Glen Canyon Dam on Abundance, Growth, and Survival Rates of Early Life Stages of Rainbow Trout in the Lees Ferry Reach of the Colorado River

High-flow experiments (HFEs) from Glen Canyon Dam are primarily intended to conserve fine sediment and improve habitat conditions for native fish in the Colorado River as it flows through Grand Canyon National Park, Arizona. These experimental flows also have the potential to affect the rainbow trout (Oncorhynchus mykiss) population in the Lees Ferry tailwater reach immediately below the dam, which supports a highly valued recreational fishery and likely influences the abundance of rainbow trout in Grand Canyon. Understanding how flow regimes affect the survival and growth of juvenile rainbow trout is critical to interpreting trends in adult abundance. This study reports on the effects of HFEs in 2004 and 2008 on early life stages of rainbow trout in the Lees Ferry reach on the basis of monthly sampling of redds (egg nests) and the abundance of the age-0 trout (fertilization to about 1 to 2 months from emergence) and their growth during a 7-year period between 2003 and 2009. Multiple lines of evidence indicate that the March 2008 HFE resulted in a large increase in early survival rates of age-0 trout because of an improvement in habitat conditions. A stock-recruitment analysis demonstrated that age-0 abundance in July 2008 was more than fourfold higher than expected, given the number of viable eggs that produced these fish. A hatch-date analysis showed that early survival rates were much higher for cohorts that hatched about 1 month after the 2008 HFE (about April 15, 2008) relative to those fish that hatched before this date. These cohorts, fertilized after the 2008 HFE, would have emerged into a benthic invertebrate community that had recovered, and was possibly enhanced by, the HFE. Interannual differences in growth of age-0 trout, determined on the basis of otolith microstructure, support this hypothesis. Growth rates in the summer and fall of 2008 (0.44 mm/day) were virtually the same as in 2006 (0.46 mm/day), the highest recorded during 6 years, even though abundance was eightfold greater in 2008. We speculate that the 60-hour-long 2008 HFE (with peak magnitude about twice that of the annual peak flow during the previous 4 years) increased interstitial spaces in the gravel bed substrate and food availability or quality, leading to higher early survival of recently emerged trout and better growth of these fish through summer and fall. Abundance in 2009 was more than twofold higher than expected, given the estimated number of viable eggs deposited in that year, perhaps indicating that the effect of the 2008 HFE on early life stages was somewhat persistent. In a 3-week interval that spanned the November 2004 HFE, abundance of age-0 trout that were approximately 7 months old from hatch experienced about a threefold decline, compared to the approximately twofold decrease observed between November and December 2008. Abundance of age-0 trout that were approximately 10 months old from hatch was very similar across sampling trips that spanned the March 2008 HFE. It is uncertain whether the decline in abundance after the November 2004 HFE was the result of higher flow-induced mortality or higher flow-induced downstream dispersal. A focused monitoring effort in Marble Canyon (the reach immediately downstream of the Lees Ferry tailwater) before and after future HFEs is recommended to resolve this uncertainty. Relatively detailed monitoring of early life stages-such as the program described in this study-is essential to establish linkages between Glen Canyon Dam operations, or possibly other factors, and trends in the abundance of important nonnative and native fish populations living downstream within Grand Canyon National Park.

Open-File Report↗

USGS2003

Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: Integrating hydrologic and biological processes using sediment perfusion cores

Inorganic N transformations were examined in streambed sediments from the Shingobee River using sediment perfusion cores. The experimental design simulated groundwater-stream water mixing within sediment cores, which provided a well-defined one-dimensional representation of in situ hydrologic conditions. Two distinct hydrologic and chemical settings were preserved in the sediment cores: the lowermost sediments, perfused with groundwater, remained anaerobic during the incubations, whereas the uppermost sediments, perfused with oxic water pumped from the overlying water column, simulated stream water penetration into the bed. The maintenance of oxic and anoxic zones formed a biologically active aerobic-anaerobic interface. Ammonium (NH4+) dissolved in groundwater was transported conservatively through the lower core zone but was removed as it mixed with aerated recycle water. Concurrently, a small quantity of nitrate (NO3-) equaling ???25% of the NH4+ loss was produced in the upper sediments. The NH4+ and NO3- profiles in the uppermost sediments resulted from coupled nitrification-denitrification, because assimilation and sorption were negligible. We hypothesize that anaerobic microsites within the aerated upper sediments supported denitrification. Rates of nitrification and denitrification in the perfusion cores ranged 42-209 and 53-160 mg N m-2 day-1, respectively. The use of modified perfusion cores permitted the identification and quantification of N transformations and verified process control by surface water exchange into the shallow hyporheic zone of the Shingobee River.

Minnesota↗

USGS2011

PEPA-1* genotype affects return rate for hatchery steelhead

Allozymes continue to be useful as genetic markers in a variety of studies; however, their utility often hinges on the selective neutrality of the allelic variation. Our study tested for neutrality between the two most common alleles (*100 and *110) at the cytosol nonspecific dipeptidase locus (PEPA-1*) in steelhead Oncorhynchus mykiss from Dworshak National Fish Hatchery in Idaho. We tested for differential growth and survival among fish with the * 100/100, *100/ 110, and *110/110 genotypes rearing in a hatchery or a natural stream. We repeated the study for two year-classes, using heterozygous (*100/110) adults to make the experimental crosses. This design avoided differences in family contribution among genotypes because each cross produced all three genotypes. We divided the progeny from each family into two groups. One group was reared in a hatchery for 1 year and then released for migration to the sea and subsequent return to the hatchery as adults. The other group was released into a natural stream and monitored for 3 years. We found no significant differences in size or survival among PEPA-1* genotypes for either the naturally reared fish or the hatchery-reared fish immediately prior to release as smolts. For females, survival to returning adult also was similar among genotypes; however, hatchery-reared males with the *110/110 genotype returned at a higher rate than did males with the *100/ 100 genotype; heterozygous males were intermediate. These results indicate that selection occurs at the PEPA-1* locus or at one or more loci tightly linked to it. The finding of nearly equal frequencies for these two alleles in the source population suggests that selection differentials among genotypes reverse or vary from year to year; otherwise, steady directional selection would drive the *100 allele to low frequencies or extinction. Locus PEPA-1* seems inappropriate for genetic marks in studies of steelhead that span the full life cycle and probably should be avoided for any portion of the life cycle. Inferences about gene flow and population structure from studies that are substantially influenced by PEPA-1* allele frequencies might be misleading. ?? Copyright by the American Fisheries Society 2006.

Transactions of the American Fisheries Society↗

USGS1996

Hydrogen isotope systematics of phase separation in submarine hydrothermal systems: Experimental calibration and theoretical models

Hydrogen isotope fractionation factors were measured for coexisting brines and vapors formed by phase separation of NaCl/H2O fluids at temperatures ranging from 399-450??C and pressures from 277-397 bars. It was found that brines are depleted in D compared to coexisting vapors at all conditions studied. The magnitude of hydrogen isotope fractionation is dependent on the relative amounts of Cl in the two phases and can be empirically correlated to pressure using the following relationship: 1000 ln ??(vap-brine) = 2.54(??0.83) + 2.87(??0.69) x log (??P), where ??(vap-brine) is the fractionation factor and ??P is a pressure term representing distance from the critical curve in the NaCl/H2O system. The effect of phase separation on hydrogen isotope distribution in subseafloor hydrothermal systems depends on a number of factors, including whether phase separation is induced by heating at depth or by decompression of hydrothermal fluids ascending to the seafloor. Phase separation in most subseafloor systems appears to be a simple process driven by heating of seawater to conditions within the two-phase region, followed by segregation and entrainment of brine or vapor into a seawater dominated system. Resulting vent fluids exhibit large ranges in Cl concentration with no measurable effect on ??D. Possible exceptions to this include hydrothermal fluids venting at Axial and 9??N on the East Pacific Rise. High ??D values of low Cl fluids venting at Axial are consistent with phase separation taking place at relatively shallow levels in the oceanic crust while negative ??D values in some low Cl fluids venting at 9??N suggest involvement of a magmatic fluid component or phase separation of D-depleted brines derived during previous hydrothermal activity.

Geochimica et Cosmochimica Acta↗

USGS1991

Effects of pesticides on songbird productivity in conjunction with pecan cultivation in southern Georgia: A multiple-exposure experimental design

A prototypic experimental design was used to assess sublethal effects of multiple and varied organophosphates and carbamates on reproduction in birds. The design allowed for classification of pesticide exposure according to toxicity of applied compounds and type and frequency of applications. Daily survival rates (DSRs) of nests, eggs, and nestlings were determined for northern mockingbirds (Mimus polyglottos) , brown thrashers (Toxostoma rufum) , and northern cardinals (Cardinalis cardinalis) nesting along edges of pecan orchards and row crops in southern Georgia. Egg and nestling DSRs for all species combined varied inversely ( P < 0.05) with exposure. Nestling weight gain was reduced ( P < 0.05) with increasing exposure levels in northern mockingbirds and brown thrashers. Parenting behavior in northern cardinal and northern mockingbird did not differ ( P > 0.05) among three exposure levels. Brain cholinesterase activities were age-dependent and substantiated adult, but not nestling, exposure. Results suggest that increasing exposure to pesticides may reduce songbird productivity.

Environmental Toxicology and Chemistry↗

USGS2019

Hydrous heating experiments at 130°C yield insights into the occurrence of hydrogen sulfide and light alkanes in natural gas reservoirs

Improved understanding of the origin of produced volatiles from conventional reservoirs and unconventional source rocks is critical for petroleum exploration and production. A series of hydrous heating experiments using two immature Type II siliciclastic source rocks, Pennsylvanian Turner Mine shale (TMS) and Devonian New Albany Shale (NAS), at 130 °C over one to two years were conducted to assess gas generation at low temperature. Elemental sulfur (ES) was added to the NAS samples to evaluate the role of sulfur on thermochemical sulfate reduction (TSR). The produced volatile composition was investigated in situ using Raman spectroscopy at the end of the heating experiments. Results show that the two source rocks yield different types and concentrations of volatiles. Only CH 4 and CO 2 were detected following hydrous heating of the TMS source rock in contrast to CH 4 , C 2 H 6 , C 3 H 8 , and CO 2 which were observed in experiments using NAS. Variations in the produced volatiles are likely the result of compositional differences within the respective source rock organic matter. Experiments involving ES show strong H 2 S signals that are likely due to the formation of H 2 S from the reaction of ES with water at 130 °C. H 2 S signals correlate with a greater relative concentration of CH 4 and CO 2 compared to experiments where ES was not added, on a time-normalized basis. The correlation between the presence of H 2 S and an increase in CH 4 and CO 2 concentration could indicate the occurrence of TSR. Here we propose that H 2 S in siliciclastic shale can be generated in the presence of ES at low temperatures via both disproportionation of ES into H 2 S and SO 4 2– , and TSR. Our findings from this study provide experimental evidence that may aid efforts to interpret the origin of H 2 S in low-temperature sedimentary basins.

Pennsylvania↗

USGS2026

Cnidarian–algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana

Cnidarian–algal (Symbiodiniaceae) symbioses rely on complex interactions among the cnidarian host, algal symbionts, and associated bacterial communities. In the upside-down jellyfish Cassiopea xamachana , the polyp-to-medusa transition (strobilation) requires the establishment of symbiosis with Symbiodiniaceae algal partners, yet bacterial community dynamics during this developmental process remain unknown. Here, we experimentally induced symbiosis in aposymbiotic polyps using four algal treatments: xenic Symbiodinium microadriaticum (native symbiont), xenic Breviolum minutum , antibiotic-treated B. minutum , and a photosynthetically impaired B. minutum mutant. We combined 16S rRNA gene sequencing with measurements of photosynthetic efficiency, asexual budding, and algal surface N-glycan profiles to characterize holobiont assembly during symbiosis onset and strobilation. Algal treatment structured bacterial communities in both algal cultures and polyp tissues. Our analyses identified a set of amplicon sequence variants that consistently distinguished strobilating polyps from non-strobilating aposymbiotic and mutant polyps, in addition to potential bacterial biomarkers associated with successful metamorphosis. Strobilation was associated with the enrichment of bacterial communities putatively involved in sulfur and nitrogen cycling, whereas non-strobilating aposymbiotic and mutant polyps were characterized by opportunistic bacteria and increased community variability. Together, these results reveal coordinated changes in algal physiology, surface glycan profiles, and bacterial community structure associated with successful strobilation in C. xamachana and support a model in which tripartite host–alga–bacteria interactions influence cnidarian life stage transitions.

ISME Communications↗

USGS2009

Behavior of steelhead fry in a laboratory stream is affected by fish density but not rearing environment

We quantified the aggression, feeding, dominance, position choice, and territory size of naturally reared steelhead Oncorhynchus mykiss fry stocked with two types of hatchery-reared fry (from conventional and enriched rearing environments) at two densities in experimental flumes to determine how rearing environment and fish density affect the behavior of steelhead fry. We found that fry density had a significant effect on most response variables but that rearing treatment did not. The rates of threats and attacks were positively correlated with fry density, but the overall feeding rate was negatively correlated. Naturally reared fry were dominant more often at low densities, and hatchery-reared fry were dominant more often at high densities. There were no significant effects of hatchery rearing treatment on aggression, feeding, dominance, or territory size. The only significant effect of rearing treatment was on the position of naturally reared fry, which occupied more upstream positions when stocked with conventional than with enriched hatchery-reared fry. Overall, rearing environment had relatively little influence on the behavior of steelhead fry. Our results indicate that stocking hatchery-reared steelhead fry at low densities may have effects on similar-size wild fish comparable to an equivalent increase in the density of wild fish. We suggest that releasing hatchery-reared steelhead fry as a supplementation strategy may have few direct negative ecological effects on wild fry.

North American Journal of Fisheries Management↗