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Hydrology, Water Quality, and Aquatic Communities of Selected Springs in the St. Johns River Water Management District, Florida

Hydrologic, physicochemical, and aquatic community data were collected and compiled by the U.S. Geological Survey for selected springs within the St. Johns River Water Management District from January 2004 to October 2007. Nine springs were included in this study: Alexander, Apopka, Bugg, De Leon, Gemini, Green, Rock, Silver Glen, and Wekiwa. Urban lands increased in Alexander, Apopka, De Leon, Gemini, Green, and Wekiwa springsheds between 1973 and 2004, accompanied by a loss of forested and/or agricultural lands in most springsheds. Forested cover increased and open surface waters and wetlands decreased in the Bugg and Rock springsheds. Although rainfall did not change significantly over time in each springshed, spring discharge decreased significantly in De Leon, Fern Hammock, Rock, Silver, and Wekiwa Springs. Nitrate concentrations increased significantly with time in Apopka, Fern Hammock, Gemini Springs run, and Juniper Springs, and decreased significantly in Alexander Spring, Bugg Spring run, Rock Springs, and Wekiwa Springs. Phosphorus increased significantly with time in Juniper Springs and decreased significantly in Apopka, De Leon, Rock, Silver Glen, and Wekiwa Springs. Benthic macroinvertebrate communities ranged from relatively low diversity assemblages (Green Spring) to assemblages with high taxonomic richness, diversity, and dominance (Rock and De Leon Springs). Shannon-Wiener diversity index averages among samples pooled by spring were lowest for Apopka Spring and greatest for Rock, Bugg, and Silver Glen Springs. Mean Stream Condition Index for pooled samples per spring was lowest for De Leon and Gemini Springs and highest for Rock and Wekiwa Springs. Mean percentages of very tolerant taxa were lowest for Alexander Spring and highest for Bugg and Green Springs. Fish community richness was lowest for Green Spring, and greatest for Alexander Spring run and Silver Glen Springs. Forty five fish species representing 35 genera and 23 families were collected or observed from all springs in this study. Samples were dominated by centrarchids, cyprinids, fundulids, atherinopsids, and poeciliids.

Scientific Investigations Report↗

Seasonal seepage investigation on an urbanized reach of the lower Boise River, southwestern Idaho, water year 2010

The U.S. Geological Survey in cooperation with the Idaho Department of Water Resources Treasure Valley Comprehensive Aquifer Management Planning effort investigated seasonal groundwater gains and losses on the Boise River, Idaho, starting in November 2009 through August 2010. The investigation was conducted using seepage runs in 11 subreaches over a 14-mile reach from downstream of the inactive streamgage, Boise River below Diversion Dam (U.S. Geological Survey station No. 13203510) to the active Boise River at Glenwood Bridge streamgage (U.S. Geological Survey station No. 13206000). The seepage runs measured mainstem discharge, and significant tributary contributions and diversions along the reach. In addition, an evaluation of the groundwater hydraulic gradient was simultaneously conducted through shallow groundwater mini-piezometers adjacent to the river during February (low stream discharge) and May (high stream discharge) measurement timeframes. November discharge estimates, representative of autumn, had gains and losses that varied by subreach with an overall net gain of 42 ± 8 cubic feet per second (ft 3 /s). This finding compares favorably to a previous U.S. Geological Survey seepage investigation in November 1996 that found a gaining reach with an estimated gain of 52 ft 3 /s. This finding also is supported by a U.S. Geological Survey investigation in the study reach in November 1971 that estimated a gain of 74 ft 3 /s, which largely came from groundwater. The February discharge estimates, representative of winter conditions, showed variability in the reach with a net gain of 52 ft 3 /s with an uncertainty estimate of ± 7 ft 3 /s, which is consistent with the low stream discharge findings from November 2009. This finding is further supported by the differential hydraulic head measured at transect sites that qualitatively indicated groundwater to surface-water movement with few exceptions. The May discharge estimates, representative of the spring-time conditions, were gaining or potentially gaining in all but one of the upper subreaches between Boise River below Diversion Dam and Boise River near MK Nature Center sites, with seepage run results supported by hydraulic head differentials indicating a groundwater to surface-water movement. The lower end of the study reach between Boise River near MK Nature Center and Boise River at Glenwood Bridge sites showed more variability with observed hydraulic head differentials that partially supported the potential gains or losses in the reach. Overall, the reach had a calculated net gain of 24 ± 51 ft 3 /s and, therefore, this estimate may or may not reflect the actual conditions in the reach. The groundwater gains and losses in August, representative of summer conditions, varied in both the upper and lower parts of the reach, with a net loss of -88 ± 69 ft 3 /s. Overall, the reach experienced a net gain from groundwater at low stream discharges (November and February), a net loss to groundwater at moderately high stream discharge (August), and an ambiguous finding at a higher stream discharge (May). The hydraulic head differentials measured between the groundwater and surface water largely supported the calculated gain and loss estimates in the subreaches, with a potential for groundwater to surface-water movement at low stream discharge in February, and variability during high stream discharge conditions in May.

Scientific Investigations Report↗

Evaluation of the potential for hysteresis in index-velocity ratings for the Chicago Sanitary and Ship Canal near Lemont, Illinois

The U.S. Geological Survey (USGS) is responsible for monitoring flows in the Chicago Sanitary and Ship Canal (CSSC) near Lemont, Illinois, as a part of the Lake Michigan Diversion Accounting overseen by the U.S. Army Corps of Engineers, Chicago District. Lake Michigan Diversion Accounting is mandated by a U.S. Supreme Court decree in order to monitor, and limit, the State of Illinois’ annual diversion of Great Lakes water through the manmade CSSC. Every 5 years, a technical review committee consisting of practicing engineers and academics reviews USGS streamgaging practices in the CSSC near Lemont, Illinois. The sixth technical review committee expressed concern that the index-velocity rating—the method used to estimate mean cross-sectional velocity from a measured index velocity—may be subject to hysteresis at this site because of the unique, unsteady hydraulics of the canal. Hysteresis in index-velocity ratings can occur at sites where the flow distribution in the channel varies significantly between the rising and falling limbs of the hydrograph for the same discharge. Presently, hysteresis in index-velocity ratings has been documented only in tidally affected sites. This report investigates whether hysteresis can occur at this nontidal site, and the conditions under which it is likely to occur, by using both a theoretical approach and a three-dimensional hydrodynamic model. The theoretical analysis investigated the conditions required for hysteresis in the index-velocity rating, and the modeling analysis focused on the effect of the timing of the inflows from the CSSC and the Cal-Sag Channel on the potential for hysteresis and whether highly resolved simulations of actual high-flow events show any evidence of hysteresis. Based on both a theoretical analysis using observed historical data and an analysis using a three-dimensional hydrodynamic model, there is no conclusive evidence for the existence of hysteresis in the index-velocity rating at the USGS streamgage on the CSSC near Lemont, Illinois. Although the theoretical analysis indicated the possibility of hysteresis at this site, the hydrodynamic conditions required to generate hysteresis are not present at this site based on historical data. Ongoing streamgaging practices at this site will use the information in this report and include periodic assessment of the index-velocity rating for any signs of hysteresis that might result from future changes to the operation of this manmade canal.

Illinois↗

Evaluation of alternative groundwater-management strategies for the Bureau of Reclamation Klamath Project, Oregon and California

The water resources of the upper Klamath Basin, in southern Oregon and northern California, are managed to achieve various complex and interconnected purposes. Since 2001, irrigators in the Bureau of Reclamation Klamath Irrigation Project (Project) have been required to limit surface-water diversions to protect habitat for endangered freshwater and anadromous fishes. The reductions in irrigation diversions have led to an increased demand for groundwater by Project irrigators, particularly in drought years. The potential effects of sustained pumping on groundwater and surface-water resources have caused concern among Federal and state agencies, Indian tribes, wildlife groups, and groundwater users. To aid in the development of a viable groundwater-management strategy for the Project, the U.S. Geological Survey, in collaboration with the Klamath Water and Power Agency and the Oregon Water Resources Department, developed a groundwater-management model that links groundwater simulation with techniques of constrained optimization. The overall goal of the groundwater-management model is to determine the patterns of groundwater pumping that, to the extent possible, meet the supplemental groundwater demands of the Project. To ensure that groundwater development does not adversely affect groundwater and surface-water resources, the groundwater-management model includes constraints to (1) limit the effects of groundwater withdrawal on groundwater discharge to streams and lakes that support critical habitat for fish listed under the Endangered Species Act, (2) ensure that drawdowns do not exceed limits allowed by Oregon water law, and (3) ensure that groundwater withdrawal does not adversely affect agricultural drain flows that supply a substantial portion of water for irrigators and wildlife refuges in downslope areas of the Project. Groundwater-management alternatives were tested and designed within the framework of the Klamath Basin Restoration Agreement (currently [2013] awaiting authorizing Federal legislation), which would establish a permanent limit on the amount of surface water that can be diverted annually to the Project. Groundwater-management scenarios were evaluated for the period 1970•2004; supplemental groundwater demand by the Project was estimated as the part of irrigation demand that would not have been satisfied by the surface-water diversion allowed under the Klamath Basin Restoration Agreement. Over the 35-year management period, 22 years have supplemental groundwater demand, which ranges from a few thousand acre-feet (acre-ft) to about 100,000 acre-ft in the driest years. The results of the groundwater-management model indicate that supplemental groundwater pumping by the Project can be managed to avoid adverse effects to groundwater discharge that supports critical aquatic habitat. The existing configuration of wells in the Project would be able to meet groundwater-pumping goals in 14 of the 22 years with supplemental groundwater demand; however, substantial irrigation shortages can be expected during drought periods when the demand for supplemental groundwater is highest. The maximum irrigation-season withdrawal calculated by the groundwater-management model is about 60,000 acre-ft, the average withdrawal in drought years is about 54,000 acre-ft, and the amount of unmet groundwater demand reaches a maximum of about 45,000 acre-ft. A comparison of optimized groundwater withdrawals by geographic region shows that the highest annual withdrawals are associated with wells in the Tule Lake and Klamath Valley regions of the Project. The patterns of groundwater withdrawal also show that a substantial amount of the available pumping capacity is unused due to the restrictions imposed by drawdown constraints. Subsequent model applications were used to evaluate the sensitivity of optimization results to various factors. A sensitivity analysis quantified the changes in optimized groundwater withdrawals that result from changes in drawdown-constraint limits. The analysis showed the potential for substantial increases in withdrawals of groundwater with less restrictive drawdown limits at drawdown-control sites in the California part of the model. Systematic variation of the drains-constraint limit yielded a trade-off curve between optimized groundwater withdrawals and the allowable reduction in groundwater discharge to the Project drain system. Additional model applications were used to assess the value of increasing the pumping capacity of the network of wells serving the Project, and the relation between reduced off-Project groundwater pumping and increased pumping by Project irrigators.

California;Oregon↗

Groundwater and surface-water interaction and potential for underground water storage in the Buena Vista-Salida Basin, Chaffee County, Colorado, 2011

By 2030, the population of the Arkansas Headwaters Region, which includes all of Chaffee and Lake Counties and parts of Custer, Fremont, and Park Counties, Colorado, is forecast to increase about 73 percent. As the region’s population increases, it is anticipated that groundwater will be used to meet much of the increased demand. In September 2009, the U.S. Geological Survey, in cooperation with the Upper Arkansas Water Conservancy District and with support from the Colorado Water Conservation Board; Chaffee, Custer, and Fremont Counties; Buena Vista, Cañon City, Poncha Springs, and Salida; and Round Mountain Water and Sanitation District, began a 3-year study of groundwater and surface-water conditions in the Buena Vista-Salida Basin. This report presents results from the study of the Buena Vista-Salida Basin including synoptic gain-loss measurements and water budgets of Cottonwood, Chalk, and Browns Creeks, changes in groundwater storage, estimates of specific yield, transmissivity and hydraulic conductivity from aquifer tests and slug tests, an evaluation of areas with potential for underground water storage, and estimates of stream-accretion response-time factors for hypothetical recharge and selected streams in the basin. The four synoptic measurements of flow of Cottonwood, Chalk, and Browns Creeks, suggest quantifiable groundwater gains and losses in selected segments in all three perennial streams. The synoptic measurements of flow of Cottonwood and Browns Creeks suggest a seasonal variability, where positive later-irrigation season values in these creeks suggest groundwater discharge, possibly as infiltrated irrigation water. The overall sum of gains and losses on Chalk Creek does not indicate a seasonal variability but indicates a gaining stream in April and August/September. Gains and losses in the measured upper segments of Chalk Creek likely are affected by the Chalk Cliffs Rearing Unit (fish hatchery). Monthly water budgets were estimated for selected segments of five perennial streams (Cottonwood, North Cottonwood, Chalk, and Browns Creeks, and South Arkansas River) in the Buena Vista-Salida Basin for calendar year 2011. Differences between reported diversions and estimated crop irrigation requirements were used to estimate groundwater recharge in the areas irrigated by water supplied from the diversions. The amount of groundwater recharge in all the basins varied monthly; however, the greatest amount of recharge was during June and July for Cottonwood, North Cottonwood, and Chalk Creeks and South Arkansas River. The greatest amount of recharge in 2011 in Browns Creek occurred in July and August. The large seasonal fluctuations of groundwater near irrigated areas in the Buena Vista-Salida Basin indicate that the increased groundwater storage resulting from infiltration of surface-water diversions has dissipated by the following spring. Areas within the Buena Vista-Salida Basin with the potential for underground storage were identified using geographic information system data, including topographic, geologic, and hydrologic data, excluding the mountainous areas that border the Buena Vista-Salida Basin and igneous and metamorphic rock outcrop areas. The areas that met the selection criteria for underground water storage are located on terrace deposits near the Arkansas River and adjacent to its major tributaries. The selected areas also contain much of the irrigated land within the basin; consequently, irrigation ditches and canals could provide a means of conveying water to potential recharge sites.

Colorado↗

Hydrology of and Current Monitoring Issues for the Chicago Area Waterway System, Northeastern Illinois

The Chicago Area Waterway System (CAWS) consists of a combination of natural and manmade channels that form an interconnected navigable waterway of approximately 90-plus miles in the metropolitan Chicago area of northeastern Illinois. The CAWS serves the area as the primary drainage feature, a waterway transportation corridor, and recreational waterbody. The CAWS was constructed by the Metropolitan Water Reclamation District of Greater Chicago (MWRDGC). Completion of the Chicago Sanitary and Ship Canal (initial portion of the CAWS) in 1900 breached a low drainage divide and resulted in a diversion of water from the Lake Michigan Basin. A U.S. Supreme Court decree (Consent Decree 388 U.S. 426 [1967] Modified 449 U.S. 48 [1980]) limits the annual diversion from Lake Michigan. While the State of Illinois is responsible for the diversion, the MWRDGC regulates and maintains water level and water quality within the CAWS by using several waterway control structures. The operation and control of water levels in the CAWS results in a very complex hydraulic setting characterized by highly unsteady flows. The complexity leads to unique gaging requirements and monitoring issues. This report provides a general discussion of the complex hydraulic setting within the CAWS and quantifies this information with examples of data collected at a range of flow conditions from U.S. Geological Survey streamflow gaging stations and other locations within the CAWS. Monitoring to address longstanding issues of waterway operation, as well as current (2014) emerging issues such as wastewater disinfection and the threat from aquatic invasive species, is included in the discussion.

Illinois↗

Comparison of benthos and plankton for selected areas of concern and non-areas of concern in western Lake Michigan Rivers and Harbors in 2012

Recent data are lacking to assess whether impairments still exist at four of Wisconsin’s largest Lake Michigan harbors that were designated as Areas of Concern (AOCs) in the late 1980s due to sediment contamination and multiple Beneficial Use Impairments (BUIs), such as those affecting benthos (macroinvertebrates) and plankton (zooplankton and phytoplankton) communities. During three seasonal sampling events (“seasons”) in May through August 2012, the U.S. Geological Survey collected sediment benthos and water plankton at the four AOCs as well as six less-degraded non-AOCs along the western Lake Michigan shoreline to assess whether AOC communities were degraded in comparison to non-AOC communities. The four AOCs are the Lower Menominee River, the Lower Green Bay and Fox River, the Sheboygan River, and the Milwaukee Estuary. Due to their size and complexity, multiple locations or “subsites” were sampled within the Lower Green Bay and Fox River AOC (Lower Green Bay, the Fox River near Allouez, and the Fox River near De Pere) and within the Milwaukee Estuary AOC (the Milwaukee River, the Menomonee River, and the Milwaukee Harbor) and single locations were sampled at the other AOCs and non-AOCs. The six non-AOCs are the Escanaba River in Michigan, and the Oconto River, Ahnapee River, Kewaunee River, Manitowoc River, and Root River in Wisconsin. Benthos samples were collected by using Hester-Dendy artificial substrates deployed for 30 days and by using a dredge sampler; zooplankton were collected by net and phytoplankton by whole-water sampler. Except for the Lower Green Bay and Milwaukee Harbor locations, communities at each AOC were compared to all non-AOCs as a group and to paired non-AOCs using taxa relative abundances and metrics, including richness, diversity, and an Index of Biotic Integrity (IBI, for Hester-Dendy samples only). Benthos samples collected during one or more seasons were rated as degraded for at least one metric at all AOCs. In the Milwaukee Estuary, benthos richness was lower in the Milwaukee River subsite spring and summer samples and in the Menomonee River subsite spring sample relative to the paired non-AOCs. Benthos diversity and IBIs at the Menomonee River subsite and IBIs at the Milwaukee River subsite and Sheboygan River were significantly lower than at all non-AOCs as a group across all seasons and therefore were rated as degraded. In addition, IBIs at the Lower Menominee River were significantly lower than those at the paired non-AOCs during all seasons and were therefore rated degraded. Benthos at both Fox River subsites and the Milwaukee River subsite were significantly different from their paired non-AOCs during all three seasons, based on a comparison of the relative abundances of taxa using multivariate testing. Metrics for plankton at AOCs were not significantly lower than those at the paired or group non-AOCs during all seasons; however, zooplankton richness in spring at the Sheboygan River and in fall at the Menomonee River subsite was rated as degraded in comparison to paired non-AOCs. Also, zooplankton richness in fall at the Fox River near Allouez subsite and in spring at the Milwaukee River subsite was rated degraded overall because values were lower than at all non-AOCs as a group and lower than at the paired non-AOCs. Zooplankton diversity in fall at the Fox River near Allouez subsite and the Lower Menominee River was rated degraded in comparison to paired non-AOC comparison sites. Zooplankton communities at the Fox River near Allouez subsite were significantly different from the paired non-AOCs when multivariate comparisons were made without rotifers other than A. priodonta . Overall, benthos and zooplankton BUIs remained at the AOCs in 2012 but no AOCs with a phytoplankton BUI were rated degraded in comparison to non-AOCs. The use of a multiple ecological measures, structural and functional, and multiple statistical analyses, biological metrics and multivariate statistics, provided assessments that defined 2012 status of communities relative to less-impaired non-AOCs in the Great Lakes area.

Michigan↗

Aquatic biological communities and associated habitats at selected sites in the Big Wood River Watershed, south-central Idaho, 2014

Assessments of streamflow (discharge) parameters, water quality, physical habitat, and biological communities were completed between May and September 2014 as part of a monitoring program in the Big Wood River watershed of south-central Idaho. The sampling was conducted by the U.S. Geological Survey in cooperation with Blaine County, Trout Unlimited, the Nature Conservancy, and the Wood River Land Trust to help identify the status of aquatic resources at selected locations in the watershed. Information in this report provides a basis with which to evaluate and monitor the long-term health of the Big Wood River and its major tributaries. Sampling sites were co-located with existing U.S. Geological Survey streamgaging stations: three on the main stem Big Wood River and four on the North Fork Big Wood River (North Fork), Warm Springs Creek (Warm Sp), Trail Creek (Trail Ck), and East Fork Big Wood River (East Fork) tributaries. The analytical results and quality-assurance information for water quality, physical habitat, and biological community samples collected at study sites during 2 weeks in September 2014 are summarized. Water-quality data include concentrations of major nutrients, suspended sediment, dissolved oxygen, and fecal-coliform bacteria. To assess the potential effects of nutrient enrichment on algal growth, concentrations of periphyton biomass (chlorophyll- a and ash free dry weight) in riffle habitats were determined at each site. Physical habitat parameters include stream channel morphology, habitat volume, instream structure, substrate composition, and riparian vegetative cover. Biological data include taxa richness, abundance, and stream-health indicator metrics for macroinvertebrate and fish communities. Statistical summaries of the water-quality, habitat, and biological data are provided along with discussion of how these findings relate to the health of aquatic resources in the Big Wood River watershed. Seasonal discharge patterns using statistical summaries of daily discharge from selected sites are reported for water years 2012–15. Results showed that annual average daily mean discharge increased from the Big Wood River near Ketchum, ID (BW Ketchum) downstream to the Big Wood River at Hailey, ID (BW Hailey), but decreased by nearly 50 percent from BW Hailey downstream to Big Wood River at Stanton Crossing near Bellevue, ID (BW Stanton). Annual variability in daily mean discharge among main-stem sites was highest at BW Stanton, suggesting that this part of the river may be subject to some level of flow alteration. Hydrologic alterations resulting in flow reduction can contribute to higher water temperature, especially during the summer months when conditions are often most stressful to fish and other stream organisms. Daily water temperature and water temperature trends from June to September 2014 are reported for select tributary and main-stem sites on the Big Wood River and can be used to assess the potential for biological impairment based on aquatic life temperature criteria for cold-water streams. The State of Idaho maximum temperature criteria for protection of cold-water aquatic life of 22 °C was exceeded at Warm Sp and BW Stanton during summer 2014, but at none of the other main-stem or tributary sites. The 13 °C critical temperature criterion for salmonid spawning was exceeded in early July 2014 at BW Ketchum and BW Hailey near the end of the rainbow trout critical spawning and rearing period. Temperature exceedances were most frequent at BW Stanton, where exceedances for rainbow trout and brown trout occurred from May through early July 2014 during most of the critical spawning and rearing period. Water quality and habitat availability did not seem to be limiting for fish or other aquatic organisms at most sites in the Big Wood River watershed. Water quality assessments in September 2014 determined no exceedances of total maximum daily load target levels. The availability and quality of habitat was limited at BW Stanton, where shallow-water habitat conditions prevailed. Macroinvertebrate community diversity was high at all sites except for BW Stanton, where low community diversity was attributed to low species richness and high abundances of a few tolerant taxa. Presence of low species diversity and high macroinvertebrate tolerance values at BW Stanton indicates that benthic community condition and stream health were reduced at that location. Fish surveys done in September 2014 did not indicate any significant reductions in native fish communities in the Big Wood River or its tributaries. Native rainbow trout ( Oncorhynchus mykiss ) and Wood River sculpin ( Cottus leiopomus ) were the dominant fish species in the drainage and were found at all tributary and main-stem sites. Non-native brown ( Salmo trutta ) and brook trout ( Salvelinus fontinalis ) were limited to lower drainage sites on the Big Wood River (BW Hailey and BW Stanton), and occurred in relatively low numbers.

Idaho↗

Simulation of groundwater and surface-water flow in the upper Deschutes Basin, Oregon

This report describes a hydrologic model for the upper Deschutes Basin in central Oregon developed using the U.S. Geological Survey (USGS) integrated Groundwater and Surface-Water Flow model (GSFLOW). The upper Deschutes Basin, which drains much of the eastern side of the Cascade Range in Oregon, is underlain by large areas of permeable volcanic rock. That permeability, in combination with the large annual precipitation at high elevations, results in a substantial regional aquifer system and a stream system that is heavily groundwater dominated. The upper Deschutes Basin is also an area of expanding population and increasing water demand for public supply and agriculture. Surface water was largely developed for agricultural use by the mid-20th century, and is closed to additional appropriations. Consequently, water users look to groundwater to satisfy the growing demand. The well‑documented connection between groundwater and the stream system, and the institutional and legal restrictions on streamflow depletion by wells, resulted in the Oregon Water Resources Department (OWRD) instituting a process whereby additional groundwater pumping can be permitted only if the effects to streams are mitigated, for example, by reducing permitted surface-water diversions. Implementing such a program requires understanding of the spatial and temporal distribution of effects to streams from groundwater pumping. A groundwater model developed in the early 2000s by the USGS and OWRD has been used to provide insights into the distribution of streamflow depletion by wells, but lacks spatial resolution in sensitive headwaters and spring areas. The integrated model developed for this project, based largely on the earlier model, has a much finer grid spacing allowing resolution of sensitive headwater streams and important spring areas, and simulates a more complete set of surface processes as well as runoff and groundwater flow. In addition, the integrated model includes improved representation of subsurface geology and explicitly simulates the effects of hydrologically important fault zones not included in the previous model. The upper Deschutes Basin GSFLOW model was calibrated using an iterative trial and error approach using measured water-level elevations (water levels) from 800 wells, 144 of which have time series of 10 or more measurements. Streamflow was calibrated using data from 21 gage locations. At 14 locations where measured flows are heavily influenced by reservoir operations and irrigation diversions, so called “ naturalized ” flows, with the effects of reservoirs and diversion removed, developed by the Bureau of Reclamation, were used for calibration. Surface energy and moisture processes such as solar radiation, snow accumulation and melting, and evapotranspiration were calibrated using national datasets as well as data from long-term measurement sites in the basin. The calibrated Deschutes GSFLOW model requires daily precipitation, minimum and maximum air temperature data, and monthly data describing groundwater pumping and artificial recharge from leaking irrigation canals (which are a significant source of groundwater recharge). The calibrated model simulates the geographic distribution of hydraulic head over the 5,000 ft range measured in the basin, with a median absolute residual of about 53 ft. Temporal variations in head resulting from climate cycles, pumping, and canal leakage are well simulated over the model area. Simulated daily streamflow matches gaged flows or calculated naturalized flows for streams including the Crooked and Metolius Rivers, and lower parts of the mainstem Deschutes River. Seasonal patterns of runoff are less well fit in some upper basin streams. Annual water balances of streamflow are good over most of the model domain. Model fit and overall capabilities are appropriate for the objectives of the project. The integrated model results confirm findings from other studies and models indicating that most streamflow in the upper Deschutes Basin comes directly from groundwater discharge. The integrated model provides additional insights about the components of streamflow including direct groundwater discharge to streams, interflow, groundwater discharge to the land surface (Dunnian flow), and direct runoff (Hortonian flow). The new model provides improved capability for exploring the timing and distribution of streamflow capture by wells, and the hydrologic response to changes in other external stresses such as canal operation, irrigation, and drought. Because the model uses basic meteorological data as the primary input; and simulates surface energy and moisture balances, groundwater recharge and flow, and all components of streamflow; it is well suited for exploring the hydrologic response to climate change, although no such simulations are included in this report. The model was developed as a tool for future application; however, example simulations are provided in this report. In the example simulations, the model is used to explore the influence of well location and geologic structure on stream capture by pumping wells. Wells were simulated at three locations within a 12-mi area close to known groundwater discharge areas and crossed by a regional fault zone. Simulations indicate that the magnitude and timing of stream capture from pumping is largely controlled by the geographic location of the wells, but that faults can have a large influence on the propagation of pumping stresses.

Oregon↗

Methods used to reconstruct historical daily streamflows in northern New Jersey and southeastern New York, water years 1922–2010

A study was conducted by the U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection, to reconstruct streamflows for use in the RiverWare model. Methods and data used to estimate daily reconstructed streamflows at 53 sites in selected subbasins in northern New Jersey and southeastern New York are presented in the report. These subbasins contain one or more surface-water diversions that are operated or have been operated in the past by water purveyors or the New Jersey Department of Environmental Protection. Reconstructed streamflows are estimates of those streamflows that would have occurred without the effects of changes in reservoir storage or surface-water diversions by water purveyors. Reconstructed flows at 47 sites were determined from monthly observed streamflows, changes in reservoir storage, and surface-water diversions. Monthly reconstructed streamflows were calculated directly for those months with sufficient data. Missing monthly reconstructed flows were estimated from relations between selected calculated values of monthly reconstructed flows and monthly observed flows at selected index gages. Daily reconstructed flows were determined from the disaggregation of monthly reconstructed flows on the basis of daily observed flows at selected streamgages. At six sites, reconstructed flows were determined from relations between discrete measurements of observed streamflows and daily observed streamflows at selected index gages.

New Jersey, New York↗

Water-quality trends in surface waters of the Jemez River and Middle Rio Grande Basin from Cochiti to Albuquerque, New Mexico, 2004–19

Municipal water supply for Albuquerque, New Mexico, is provided, in part, through diversion of surface water from the Rio Grande by way of the San Juan-Chama Drinking Water Project diversion structure. Changes in surface-water quality along the Rio Grande and its tributaries upstream from the San Juan-Chama Drinking Water Project diversion structure are not well characterized. This study describes the methods and results of an analysis of surface-water-quality trends for selected constituents in the Rio Grande upstream from Albuquerque. Trends were evaluated for differing time periods ranging from 2004 to 2019 by using the Seasonal Kendall Tau (SKT) test and the Weighted Regressions on Time, Discharge, and Season (WRTDS) model. Water-quality data at three long-term sites were used for the trend analyses in this study, with the Cochiti and Alameda sites along the Rio Grande and the Jemez Canyon Dam site along the Jemez River, a tributary of the Rio Grande. The proximity of the Cochiti and Jemez Canyon Dam sites to dams is a drawback to the analysis because it is difficult to differentiate between the influence of dam management and the influence of streamflow on water-quality trends. The data used also did not fully meet desired levels of seasonal sampling density and had shorter periods of record than typically used for trend analysis, and this should be considered in the interpretation of these results. Study results indicate that concentrations, and thereby fluxes, are influenced by changes in streamflow at the Alameda site. Most trends from the WRTDS results, obtained by using flow-normalization, were downward for constituents at the Alameda site. Most constituents that were analyzed for trends by using SKT did not have a significant trend at any of the sites included in this study, indicating either that the water quality in the Middle Rio Grande Basin has been stable during the study period or that not enough samples were collected during different seasons to characterize the range of concentration variability with streamflow. The SKT test results indicate upward trends in concentrations of the following constituents: aluminum and antimony at the Alameda site, nitrate and nitrate plus nitrite at the Cochiti site, and potassium and antimony during the spring season at Jemez Canyon Dam. The SKT test results indicate a downward trend in cobalt at the Cochiti site that is subject to bias in the cobalt concentrations. SKT test results also indicate small, downward trends in Kjeldahl nitrogen at the Alameda and Cochiti sites. Concentrations of water-quality constituents were also compared to Federal and State water-quality standards to provide context and relevance to the results. No concentrations were above the national primary or secondary drinking water standards at the Alameda and Cochiti sites, but the Jemez Canyon Dam site did have concentrations above the U.S. Environmental Protection Agency primary drinking water standard for arsenic and above the national secondary drinking water standards for dissolved solids and aluminum. The Alameda and Cochiti sites are on reaches of the Rio Grande that are listed as impaired for gross alpha particles and the Alameda site is on a reach of the Rio Grande that is listed as impaired for Escherichia coli , but there were no consistent changes in concentrations of these constituents at the impaired locations.

New Mexico↗

Fluvial sediment dynamics in the Shoshone River and tributaries around Willwood Dam, Park County, Wyoming

Sedimentation affects many of the aging reservoirs in the United States. Dams and water diversions from rivers have been central elements of infrastructure supporting agricultural irrigation in the arid and semiarid regions of the Western United States for more than a century. The Willwood Irrigation District diversion dam (hereafter referred to as “Willwood Dam”) in Park County, Wyoming, is approximately 12 miles northeast of Cody, Wyo.; has a structural height of 70 feet; and impounds the Shoshone River for diversion into the Willwood Canal. Willwood Dam is part of a larger irrigation scheme supported by water storage in the much larger Buffalo Bill Dam, which is approximately 20 miles upstream. In October 2016, renovation construction activities at Willwood Dam and the Willwood Canal caused an unplanned evacuation of nearly 96,000 cubic yards of fine sediment. The fine sediment release in 2016 raised concerns that ongoing sediment management at Willwood Dam could impose limits on the long-term health of the aquatic ecosystem and fish populations. The U.S. Geological Survey, in cooperation with Wyoming Department of Environmental Quality and Willwood Work Groups 2 and 3, initiated an investigation of the dynamics of sediment transport in the Shoshone River and selected tributaries between Buffalo Bill Dam and Willwood Dam. The goal of the study was to quantify sediment transport into and out of Willwood Dam on an annual, seasonal, and event basis to better understand the relative quantities of sediment coming from natural sources and human activities on the landscape. The study ran from March 2019 through October 2021 and used observations of streamflow, turbidity, and acoustic backscatter collected at streamgages upstream and downstream from Willwood Dam to quantify suspended-sediment loads into and out of the dam during irrigation and fallow seasons, precipitation-runoff events, and deliberate sediment releases. Each tributary’s relative contribution to the sediment load upstream from Willwood Dam was examined using discrete measurements of suspended-sediment concentration and bedload during irrigation and fallow seasons, precipitation events, and stable conditions. Analysis of daily precipitation and temperature data indicated that conditions in the study area during the 2019 agricultural year were wetter and colder than period of record normal, and drier and near normal temperatures for the 2020 and 2021 agricultural years. Not all sediment load records between 2019 and 2021 are complete because of rejected observations (outliers), instrument failures or fouling, and instrument removal for calibrations. Statistical modeling of suspended-sediment concentration using paired values of turbidity and acoustic backscatter produced four models that, after refinement, had coefficients of determination indicating that more than 84 percent of the variance was explained by either turbidity or acoustic backscatter. A system of rules was developed to select the model predictions based on the seasonal operations of Willwood Dam, assumptions about the grain sizes mobilized during these operations, and assumed accuracy of the models at the downstream streamgage (Shoshone River below Willwood Dam, near Ralston, Wyo. [streamgage 06284010]) under different operational conditions. The sediment budget between upstream and downstream estimates of loads was interpreted using the mean predicted values bound by their respective model prediction intervals. When mean predicted loads of one streamgage were contained in the prediction intervals of the other streamgage, and vice-versa, difference in the sediment budget were interpreted as “indeterminate.” Modeled sediment load balances demonstrated the depositional and erosional behaviors expected from the conceptual model of dam operations whereby sediment tends to accumulate during irrigation seasons when the dam is spilling over the top, and sediment tends to evacuate during the fallow seasons when it is flowing through the sluice gates at the base of the dam. The sediment load calculations using the rules-based model criteria indicated that between 14,200 and 380,000 tons of suspended sediment moved through the Shoshone River around Willwood Dam during the irrigation seasons of 2019, 2020, and 2021; 380,000 tons of suspended sediment were transported during the cool, wet year of 2019, and 14,200 tons of suspended sediment were transported in 2020, which was relatively dry. During fallow seasons 2019, 2020, and 2021, which had fewer complete records, between 1,140 and 106,000 tons of suspended sediment was estimated to have moved through the river. For all seasons except fallow season 2022, the models estimated that more sediment was released from the dam than entered the dam, but the modeled mean loads at each streamgage were nearly always within the prediction intervals of each other, making the sediment balance indeterminant. Examination of suspended-sediment loads during irrigation seasons indicated that between 65 and 85 percent of fine sediment was transported during annual high flows and storm events, with the remainder transported during steady, lower streamflows. Examination of suspended loads during fallow seasons indicated that deliberate sediment releases through Willwood Dam accounted for between 39 and 67 percent of the total sediment moved during the fallow seasons. Deliberate sediment releases from Willwood Dam had estimated net exports of between 1,360 and 22,400 tons. Between August 2017 and July 2023, suspended-sediment concentration and bedload sediment samples were collected from 9 tributaries to the Shoshone River during 137 sampling events, including stable and precipitation-runoff conditions. During irrigation season precipitation events, the mean total sediment yields ranged from 0.33 to 9.51 tons per day per square mile; during fallow season precipitation events, the mean total yields ranged from 0.04 to 0.95 ton per day per square mile. The mean total sediment yield per unit area across all samples at each tributary site ranged from 0.26 to 3.08 tons per day per square mile. Bedload was a minor fraction of the total load, constituting a mean of 4 percent across all samples; 3 and 6 percent for events and nonevents, respectively, during irrigation season; and 3 and 1 percent for events and nonevents, respectively, during the fallow season. With the exception of one tributary, Dry Creek, these mean yield values were within the range of watershed-scale background sediment yield values estimated from reservoir surveys and previous suspended-sediment studies. Imagery from irrigation seasons 2012, 2015, 2017, 2019, and 2022 was used to determine the planimetric backwater extent of the pool area in the Shoshone River behind Willwood Dam to identify any changes in sediment storage. Active river channel widths in the Shoshone River upstream from Willwood Dam were all similar between years except 2015, which was determined to be statistically different from all other years. Bathymetric data taken in the pool behind Willwood Dam during three different surveys between November 2017 and April 2022 indicated no statistically significant differences in bed elevations between the years. Results from the planimetric and bathymetric survey data provide multiple lines of evidence indicating that sediment did not accumulate behind the dam within the error of the methods used. Examination of how precipitation affects sediment transport in the Shoshone River upstream from Willwood Dam indicated that accumulated rainfall from the natural runoff events captured during the study period varied from a trace to as much as 4.26 inches, with associated predicted suspended-sediment loads varying from 112 to 232,000 tons of suspended sediment. The behavior of the sediment loads relative to accumulated precipitation did not appear to change depending on irrigation or fallow season. A model of suspended-sediment concentrations relative to the 2-day accumulated precipitation indicated that suspended-sediment concentrations in the Shoshone River upstream from Willwood Dam increased exponentially for accumulations of 0.3 inch or more; such storms accounted for 10 percent or less of precipitation events observed during the 1981 to 2018 period of record. The gaps in records, precision of the instrumentation, and large variation in grain sizes in suspended-sediment mixtures downstream from the dam made closing the sediment budgets for most seasons unattainable. The biggest recent change in sediment storage measured using the planimetric area of deposits behind Willwood Dam took place between 2015 and 2017. The main event between these two measurements was the installation of new Willwood Canal gates in October 2016, which resulted in the large unplanned sediment release. Because the sediment budgets were nearly always indeterminate and the planimetric and bathymetric data indicated little change in the bed and bank material, it is likely that the change in sediment storage behind the dam during the study period was small relative to the precision of the statistical models and other uncertainties. This body of evidence suggests that, averaged during the 3-year study period, no major changes in storage took place, and that the current operations may be keeping storage at near-equilibrium. This condition could have been initiated because the middle sluice gate has now been operational since 2014, and the sediment release in October 2016 evacuated a large amount of legacy sediment from storage. Although the uncertainties are large, sluicing events allow for controlled releases of sediment that contributed to the near equilibrium conditions observed over an annual basis during this study.

Wyoming↗

Water-budget simulations for selected watersheds in Cameron County, Texas, 2022–23

The U.S. Geological Survey, in cooperation with the City of Brownsville, Texas, configured and calibrated a set of hydrologic models for a 217-square-mile study area in Cameron County in south Texas during 2022–23. The models were used for estimating runoff and quantities of water diverted from the Rio Grande/Rio Bravo del Norte (hereinafter referred to as the “Rio Grande”) to maintain water-surface elevations in the canals and resacas (former distributary channels cut off from the main channel of the Rio Grande). Resacas provide habitat to aquatic species and help reduce the effects of flooding. Because of the large size of the study area and diversity of hydrologic conditions, the study area was divided into 11 watersheds, and separate hydrologic models were developed for 9 of the watersheds. Six of the nine modeled watersheds are drained mostly by canals (canal watersheds), and three of the modeled watersheds drain to resacas (resaca watersheds). The Hydrological Simulation Program—FORTRAN was selected for modeling the study area watersheds because it is flexible in simulating a wide variety of watershed conditions. The models were calibrated with streamflow data collected during 2022–23. The calibrated models were used to simulate water budgets (streamflow, evapotranspiration, water-storage volumes, and water diversions and withdrawals) during 2022–23. Model simulations showed that the resaca watersheds required more diversions from the Rio Grande and released less runoff than did the canal watersheds. Management practices maintaining resaca water levels constrained their runoff.

Texas↗

User's manual for the National Water-Quality Assessment Program Invertebrate Data Analysis System (IDAS) software, version 5

The Invertebrate Data Analysis System (IDAS) software was developed to provide an accurate, consistent, and efficient mechanism for analyzing invertebrate data collected as part of the U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program. The IDAS software is a stand-alone program for personal computers that run Microsoft Windows(Registered). It allows users to read data downloaded from the NAWQA Program Biological Transactional Database (Bio-TDB) or to import data from other sources either as Microsoft Excel(Registered) or Microsoft Access(Registered) files. The program consists of five modules: Edit Data, Data Preparation, Calculate Community Metrics, Calculate Diversities and Similarities, and Data Export. The Edit Data module allows the user to subset data on the basis of taxonomy or sample type, extract a random subsample of data, combine or delete data, summarize distributions, resolve ambiguous taxa (see glossary) and conditional/provisional taxa, import non-NAWQA data, and maintain and create files of invertebrate attributes that are used in the calculation of invertebrate metrics. The Data Preparation module allows the user to select the type(s) of sample(s) to process, calculate densities, delete taxa on the basis of laboratory processing notes, delete pupae or terrestrial adults, combine lifestages or keep them separate, select a lowest taxonomic level for analysis, delete rare taxa on the basis of the number of sites where a taxon occurs and (or) the abundance of a taxon in a sample, and resolve taxonomic ambiguities by one of four methods. The Calculate Community Metrics module allows the user to calculate 184 community metrics, including metrics based on organism tolerances, functional feeding groups, and behavior. The Calculate Diversities and Similarities module allows the user to calculate nine diversity and eight similarity indices. The Data Export module allows the user to export data to other software packages (CANOCO, Primer, PC-ORD, MVSP) and produce tables of community data that can be imported into spreadsheet, database, graphics, statistics, and word-processing programs. The IDAS program facilitates the documentation of analyses by keeping a log of the data that are processed, the files that are generated, and the program settings used to process the data. Though the IDAS program was developed to process NAWQA Program invertebrate data downloaded from Bio-TDB, the Edit Data module includes tools that can be used to convert non-NAWQA data into Bio-TDB format. Consequently, the data manipulation, analysis, and export procedures provided by the IDAS program can be used to process data generated outside of the NAWQA Program.

Techniques and Methods↗

Use of a precipitation-runoff model to simulate natural streamflow conditions in the Methow River basin, Washington

Management of the water resources of the Methow River Basin is changing in response to the listing of three species of fish under the Endangered Species Act and the Washington State-legislated watershed-planning process. Management options must be considered that minimize adverse effects on people but meet instream flow needs for fish. This report describes the construction and calibration of the Methow River Basin watershed model and evaluates the accuracy of the model as a predictive tool for assessing the natural instream flow conditions. The term ?natural? instream flow is stressed because surface water within the Basin is used for agricultural irrigation through an extensive system of diversions. The USGS Modular Modeling System was used for the watershed modeling component of the Methow River Basin study. The Geographic Information System Weasel characterized the physical properties of the basin, and the Precipitation-Runoff Modeling System simulated the natural streamflow. Natural streamflow conditions in the Basin were difficult to calibrate because six of the seven streamflow gaging stations are located below irrigation diversions and few streamflow measurements exist for the study area before the diversions were present. Therefore, limited records of natural streamflow conditions were available and estimations concerning some physical processes could not be quantified. Streamflow was simulated for water years 1992-99 to calibrate the model to measured streamflows. Simulated and measured streamflow generally showed close agreement, especially during spring runoff from snowmelt. Low-flow periods, most restrictive to fish habitation, were simulated reasonably well, yet possessed the most uncertainty. Simulations of the total annual runoff as a percentage of measured annual runoff for the 8-year calibration period at seven gaging stations ranged from -33.7 to +30.5 percent with 70 percent of the simulated values within 16 percent. Simulation of water years 1959-99 demonstrated great variability in monthly streamflow statistics. The simulated mean monthly flows for the seven streamflow-gaging stations were an average of 11.5 percent higher for the calibration period (1992-99) than for the entire simulation period (1959-99).

Water-Resources Investigations Report↗

Comprehensive water quality of the Boulder Creek Watershed, Colorado, during high-flow and low-flow conditions, 2000

Executive Summary The Boulder Creek Watershed, Colorado, is 1160 square kilometers in area and ranges in elevation from 1480 to 4120 meters above sea level. Streamflow originates primarily as snowmelt near the Continental Divide, and thus discharge varies seasonally and annually (Chapter 1). Most of the water in Boulder Creek is diverted for domestic, agricultural, and industrial use. Some diverted water is returned to the creek as wastewater effluent and by ditch returns, and additional water enters as groundwater and by transbasin diversions. These diversions and returns lead to complex temporal and spatial variations in discharge. The variations in discharge, along with natural factors such as geology and climate, and anthropogenic factors such as wastewater treatment, agriculture, mining, and urbanization, can affect water chemistry. As with many watersheds in the American West, dependable water quality and sufficient water supply are issues facing local water managers and users. Detailed water-quality and sediment sampling allows the identification of sources and sinks of chemical constituents and an understanding of the processes at work in a river system. This study, the most comprehensive water-quality analysis performed for Boulder Creek to date, was a cooperative effort of the U.S. Geological Survey (USGS) and the city of Boulder. Geographic information systems and modeling programs were used to delineate watershed boundaries, land cover, and geology (Chapter 2). During high-flow (June 2000) and low-flow (October 2000) conditions, researchers evaluated 226 water-quality variables, including basic water-quality indicators (Chapter 3), major ions and trace elements (Chapter 4), wastewater-derived organic compounds (Chapter 5), and pesticides (Chapter 6). Discharge (Chapter 1) and bed-sediment particle size and mineralogy (Chapter 7) were also evaluated. This cooperative study was facilitated by the Boulder Area Sustainability Information Network (BASIN), which provides public access to environmental information about the Boulder Creek Watershed on a website, www.basin.org. In addition to the USGS and city of Boulder data, researchers at the Institute of Arctic and Alpine Research at the University of Colorado provided water chemistry data for the headwaters of North Boulder Creek, upstream of the reach of the USGS/city of Boulder sampling sites (Chapter 8). Snowmelt produces high flows in Boulder Creek in late spring to early summer (Chapter 1). Because precipitation falling in the headwaters is very dilute (specific conductance about 5 microsiemens per centimeter), most chemical constituents are present in lower concentrations during high flows (Chapters 3, 4, 5, 6, and 8). However, concentrations of some constituents, such as total suspended solids (Chapter 3) and organic carbon (Chapter 5), increase during the spring snowmelt flush. The upper basin, which consists of alpine, subalpine, montane, and foothills regions west of the mouth of Boulder Canyon, is underlain by Precambrian igneous and metamorphic rocks (Chapter 1). Major dissolved inorganic constituents in headwater sites were found to be enriched by factors of 10 to 20 relative to precipitation; this is consistent with minor weathering of the local crystalline bedrock (Chapter 4). Some anthropogenic input is observed in the headwaters; precipitation introduces nitrogen derived from fossil fuel combustion and agricultural activities (Chapter 8). The lower basin, which consists of the plains region east of the mouth of Boulder Canyon, is underlain by Mesozoic sedimentary rock and Quaternary alluvium, and has substantially more anthropogenic sources. Concentrations of most dissolved inorganic constituents increased in the lower basin. Differentiation between natural and anthropogenic sources of some dissolved constituents is difficult because both sources contribute to the water composition in this region. The increase of most major constituents (bicarbonate, calcium, chloride, magnesium, sodium, and sulfate) is consistent with weathering of the underlying sedimentary bedrock (Chapter 4). It is likely that anthropogenic loading of constituents in this reach occurs during storm events. Fecal coliform concentrations were variable and in some cases exceeded state standards, primarily during low-flow conditions (Chapter 3). Effluent from Boulder’s 75th Street Wastewater Treatment Plant (WWTP) has a substantial impact on the water chemistry of lower Boulder Creek. The WWTP increases the concentrations of nutrients such as nitrogen and phosphorus (Chapter 3), major ions and trace metals (Chapter 4), and organic carbon (Chapter 5) in Boulder Creek. The effluent contained a spike in gadolinium, a rare earth element that is ingested for magnetic resonance imaging as a contrasting agent and then excreted to the urban wastewater system. The effluent also contained trace organic compounds such as surfactants, pharmaceuticals, hormones (Chapter 5), and pesticides (Chapter 6), which also were detected at downstream Boulder Creek sites. Water chemistry of Boulder Creek downstream of the WWTP is largely controlled by the degree of dilution of the wastewater effluent, which varies depending on the baseflow of Boulder Creek, the volume of wastewater effluent, and depletion by agricultural diversions. Coal Creek, a tributary of Boulder Creek, contains wastewater effluent from four additional WWTPs, and increases the load of many constituents in Boulder Creek. In addition to the impact from wastewater effluent, lower Boulder Creek is affected by agricultural land use. Eleven of 84 analyzed pesticides were detected in Boulder Creek or its inflows, primarily in the eastern section of the watershed (Chapter 6). This collaborative study provides an in-depth evaluation of the hydrology, water chemistry, and sediment mineralogy of North Boulder Creek, Middle Boulder Creek, Boulder Creek, and major inflows. The detailed sampling and analysis in this report provide a baseline for future reference, as well as information on the effect of land use and geology on water chemistry.

Colorado↗

Patterns and sources of fecal coliform bacteria in three streams in Virginia, 1999-2000

Surface-water impairment by fecal coliform bacteria is a water-quality issue of national scope and importance. In Virginia, more than 175 stream segments are on the Commonwealth's 1998 303(d) list of impaired waters because of elevated concentrations of fecal coliform bacteria. These fecal coliform-impaired stream segments require the development of total maximum daily load (TMDL) and associated implementation plans, but accurate information on the sources contributing these bacteria usually is lacking. The development of defendable fecal coliform TMDLs and management plans can benefit from reliable information on the bacteria sources that are responsible for the impairment. Bacterial source tracking (BST) recently has emerged as a powerful tool for identifying the sources of fecal coliform bacteria that impair surface waters. In a demonstration of BST technology, three watersheds on Virginia's 1998 303(d) list with diverse land-use practices (and potentially diverse bacteria sources) were studied. Accotink Creek is dominated by urban land uses, Christians Creek by agricultural land uses, and Blacks Run is affected by both urban and agricultural land uses. During the 20-month field study (March 1999?October 2000), water samples were collected from each stream during a range of flow conditions and seasons. For each sample, specific conductance, dissolved oxygen concentration, pH, turbidity, flow, and water temperature were measured. Fecal coliform concentrations of each water sample were determined using the membrane filtration technique. Next, Escherichia coli (E. coli) were isolated from the fecal coliform bacteria and their sources were identified using ribotyping (a method of 'genetic fingerprinting'). Study results provide enhanced understanding of the concentrations and sources of fecal coliform bacteria in these three watersheds. Continuum sampling (sampling along the length of the streams) indicated that elevated concentrations of fecal coliform bacteria (maximum observed concentration of 290,000 colonies/100 milliliters (col/100mL) could occur along the entire length of each stream, and that the samples collected at the downstream monitoring station of each stream were generally representative of the entire upstream reach. Seasonal patterns were observed in the base-flow fecal coliform concentrations of all streams; concentrations were typically highest in the summer and lowest in the winter. Fecal coliform concentrations were lowest during periods of base flow (typically 200?2,000 col/100mL) and increased by 3?4 orders of magnitude during storm events (as high as 700,000 col/100mL). Multiple linear regression models were developed to predict fecal coliform concentrations as a function of streamflow and other water-quality parameters. The source tracking technique provided identification of bacteria contributions from diverse sources that included (but were not limited to) humans, cattle, poultry, horses, dogs, cats, geese, ducks, raccoons, and deer. Seasonal patterns were observed in the contributions of cattle and poultry sources. There were relations between the identified sources of fecal coliform bacteria and the land-use practices within each watershed. There were only minor differences in the distribution of bacteria sources between low-flow periods and high-flow periods. A coupled approach that utilized both a large available source library and a smaller, location-specific source library provided the most success in identifying the unknown E. coli isolates. BST data should provide valuable support and guidance for producing more defendable and scientifically rigorous watershed models. Incorporation of these bacteria-source data into watershed management strategies also should result in the selection of more efficient source-reduction scenarios for improving water quality.

Water-Resources Investigations Report↗

Conjunctive-use optimization model of the Mississippi River Valley alluvial aquifer of northeastern Arkansas

The Mississippi River Valley alluvial aquifer is a water-bearing assemblage of gravels and sands that underlies about 32,000 square miles of Missouri, Kentucky, Tennessee, Mississippi, Louisiana, and Arkansas. Because of the heavy demands placed on the aquifer, several large cones of depression over 100 feet deep have formed in the potentiometric surface, resulting in lower well yields and degraded water quality in some areas. A ground-water flow model of the alluvial aquifer was previously developed for an area covering 14,104 square miles, extending northeast from the Arkansas River into the northeast corner of Arkansas and parts of southeastern Missouri. The flow model showed that continued ground-water withdrawals at rates commensurate with those of 1997 could not be sustained indefinitely without causing water levels to decline below half the original saturated thickness of the aquifer. To develop estimates of withdrawal rates that could be sustained in compliance with the constraints of critical ground-water area designation, conjunctive-use optimization modeling was applied to the flow model of the alluvial aquifer in northeastern Arkansas. Ground-water withdrawal rates form the basis for estimates of sustainable yield from the alluvial aquifer and from rivers specified within the alluvial aquifer model. A management problem was formulated as one of maximizing the sustainable yield from all ground-water and surface-water withdrawal cells within limits imposed by plausible withdrawal rates, and within specified constraints involving hydraulic head and streamflow. Steady-state flow conditions were selected because the maximized withdrawals are intended to represent sustainable yield of the system (a rate that can be maintained indefinitely). Within the optimization model, 11 rivers are specified. Surface-water diversion rates that occurred in 2000 were subtracted from specified overland flow at the appropriate river cells. Included in these diversions were the planned diversions of 63,339,248 ft3/d for the Bayou Meto project area and 55,078,367 ft3/d for the Grand Prairie project area, which factor in an additional 30 and 40 percent transmission loss, respectively. Streamflow constraints were specified at all 1,165 river cells based on average 7-day minimum flows for 10 years. Sustainable yield for all rivers ranged from 0 (Current, Little Red, and Bayou Meto Rivers) to almost 5 billion cubic feet per day for the Arkansas River. Total sustainable yield from all rivers combined was 12.8 billion cubic feet per day, which represents a substantial source for supplementing ground water to meet the total water demand. Sustainable-yield estimates are affected by the allowable upper limit on withdrawals from wells specified in the optimization model. Ground-water withdrawal rates were allowed to vary as much as 200 percent of the withdrawal rate in 1997. As the overall upper limit on withdrawals is increased, the sustainable yield generally increases. Tests with the optimization model show that without limits on pumping, wells adjacent to sources of water would have optimized withdrawal rates that were orders of magnitude larger than rates corresponding to those of 1997. The sustainable yield from ground water for the entire study area while setting the maximum upper limit as the amount withdrawn in 1997 is 360 million cubic feet per day, which is only about 57 percent of the amount withdrawn in 1997 (635.6 million cubic feet per day). Optimal sustainable yields from within the Bayou Meto irrigation project area and within the Grand Prairie irrigation project area are 18.1 and 9.1 million cubic feet per day, respectively, assuming a maximum allowable withdrawal rate equal to 1997 rates. These values of sustainable yield represent 35 and 30 percent respectively of the amount pumped from these project areas in 1997. Unmet demand (defined as the difference between the optimized withdrawal rate or sustainable yield, and the anticipated demand) was calculated using different demand rates based on multiples of the 1997 withdrawal rate. Assuming that demand is the 1997 withdrawal rate, and that sustainable-yield estimates are those obtained using upper limits of withdrawal rates of 100-, 150-, and 200-percent of 1997 withdrawal rates, then the resulting unmet demand for the entire model area is 275.5, 190.9, and 110 million cubic feet per day, respectively. Whereas, if the demand is specified as 100-, 150-, and 200-percent of the 1997 withdrawal rate, and the sustainable-yield estimates remain the same, then the resulting unmet demand for the entire model area is 275.5, 508.8, and 745.8 million cubic feet per day, respectively. These unmet demands for ground water could be obtained from large sustainable surface-water withdrawals.

Arkansas↗