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Seventy-five years of science—The U.S. Geological Survey’s Western Fisheries Research Center

As of January 2010, 75 years have elapsed since Dr. Frederic Fish initiated the pioneering research program that would evolve into today’s Western Fisheries Research Center (WFRC). Fish began his research working alone in the basement of the recently opened Fisheries Biological Laboratory on Lake Union in Seattle, Washington. WFRC’s research began under the aegis of the U.S. Fish and Wildlife Service and ends its first 75 years as part of the U.S. Geological Survey with a staff of more than 150 biologists and support personnel and a heritage of fundamental research that has made important contributions to our understanding of the biology and ecology of the economically important fish and fish populations of the Nation. Although the current staff may rarely stop to think about it, WFRC’s antecedents extend many years into the past and are intimately involved with the history of fisheries conservation in the Western United States. Thus, WFRC Director Lyman Thorsteinson asked me to write the story of this laboratory “while there are still a few of you around who were here for some of the earlier years” to document the rich history and culture of WFRC by recognizing its many famous scientists and their achievements. This historyalso would help document WFRC’s research ‘footprint’ in the Western United States and its strategic directions. Center Director Thorsteinson concluded that WFRC’s heritage told by an emeritus scientist also would add a texture of legitimacy based on personal knowledge that will all-to-soon be lost to the WFRC and to the USGS. The WFRC story is important for the future as well as for historical reasons. It describes how we got to the place we are today by documenting the origin, original mission, and our evolving role in response to the constantly changing technical information requirements of new environmental legislation and organizational decision-making. The WFRC research program owes its existence to the policy requirements of Federal conservation legislation originating with the construction of Grand Coulee Dam in 1933. The research program was shaped by laws enacted in subsequent years such as the Federal Water Pollution Control Act (1972), National Environmental Policy Act (1973), Endangered Species Act (1974), and Northwest Power Planning Act (1980), to name only a few. The WFRC has not been constrained by direct management or regulatory responsibility for a particular fishery (such as providing sustainable catch limits data to a resource management structure). Thus, WFRC has been able to concentrate on scientific pursuits and information needs required by contemporary environmental legislation. Over the years, we have pioneered in several important areas of fisheries research including the diagnoses and control of diseases in economically important fish, effects of environmental alterations on the physiological quality and survival of Pacific salmon released from federal mitigation hatcheries, applications in biotelemetry, and the bioenergetics of predator-prey interactions in the Columbia River. The WFRC of today is a widely distributed organization in the Western United States. Knowledge of the historical connections and accomplishments of our predecessors is important beyond the sense of pride and unity it instills in the WFRC family of today. For example, a discerning reader will note the evolution of WFRC’s research from a single disciplinary focus (early era—hatchery disease problems), to multiple disciplines (middle to late era—species, populations, habitats; threatened and endangered species), to the present era (multidisciplinary and with increasing process focus). For the benefit of the current WFRC staff, more emphasis has been placed on the early years rather than on the present day because people are quite naturally more familiar with the recent past than with the research done during the first decades of WFRC’s existence. By every rational measure, the WFRC has evolved into a fisheries research organization well positioned to provide the biological information needed to support the continued conservation and management of our Nation’s living aquatic natural resources. The high standard of excellence that connects WFRC’s past to our present research program provides a firm foundation on which to base the work yet to be done. In another 75 years, WFRC will undoubtedly be a very different place than it is today, but its evolution will be forever rooted in the story of the research and of the people related here. More about the diverse fisheries research projects WFRC scientists are conducting today is available at WFRC’s website: http://wfrc.usgs.gov/.

Washington↗

Investigation of wind and water level for the Giacomini Wetland Restoration Project, Point Reyes National Seashore

Point Reyes National Seashore (PRNS), comprising unique elements of geological, biological, and historical interest, is located on the central California coast approximately 60 km northwest of San Francisco. The National Seashore contains nearly 130 km of exposed and protected shorelines, spectacular coastal cliffs and headlands, lagoons, open grasslands, bushy hillsides, and forested ridges. Approximately 30 km of the shoreline are coastal-dune habitat that supports 11 federally listed species, including the threatened western snowy plover and the endangered plants Tidestrom's lupine ( Lupinus tidestromii ) and beach layia ( Layia carnosa ). The San Andreas Fault, a right-lateral strike-slip fault, trends northwest along the northeastern side of the park. Tomales Bay, which is straight, long, narrow, and shallow, runs along the northeastern boundary of PRNS. The Bay, which fills the northwestern end of a rift valley at the intersection of the San Andreas Fault with the coastline, is approximately 20 km long, 2 km wide, and 6 m deep with mountainous terrain to the southwest and rolling hills to the northeast. Tomales Bay is one of the cleanest estuaries on the West Coast. In winter, approximately 17,000 to 20,000 shorebirds inhabit Tomales Bay and Bodega Bay, which lies directly to the north. At the head of Tomales Bay, the Giacomini Ranch comprises 563 acres of pastureland currently being used for grazing dairy cattle. After more than 50 years of operation as a dairy, the National Park Service acquired the Giacomini property with the intention to restore most of it and the nearby Olema Marsh to tidal wetland. Restoration will add approximately 4% to the existing coastal wetlands in California. The project will return the headwaters of Tomales Bay and two major stream intersections to an intertidal marsh environment, enhancing habitat for both wildlife and fish populations and contributing to the long-term health of Tomales Bay. Prior to the establishment of the ranch, the area was primarily salt marsh that formed as the delta of Lagunitas Creek expanded into Tomales Bay. In converting the salt marsh to dairy land, levees and tide gates were constructed to prevent tidal incursion and stream flooding. Those levees have significantly altered the patterns of estuarine circulation and sediment deposition. To restore natural hydrologic processes within the area and to promote the return of ecological functions and processes, the levees will have to be breached or removed. Developing a successful restoration strategy requires knowledge of elevations within the pastureland and the range of water depths that can be expected from tidal, river, and wind action. In support of the restoration program, the USGS provides technical assistance to PRNS in the form of a scientific study focusing on understanding the physical processes that could affect the Giacomini wetland restoration. The study will yield scientific products that NPS resource managers can use in designing and implementing the restoration project. Research elements include: - Develop a Geodetic Control Network (GCN) throughout PRNS that meets the standards specified National Geodetic Survey data base (the NGS "Bluebook"). The grid will allow this and future studies to be conducted to a precision commensurate with the expressed goals of PRNS. The survey will consist of three steps: (1) verify existing GPS control monuments in the area; (2) tie control monuments in the study areas to the GPS control monuments; and (3) establish NAVD88 elevations using a digital electronic level. - Conduct a detailed survey of the Giacomini site to produce an accurate topographic map of the property. The site survey can be coupled with on-site water-level measurements to produce an empirical flooding model. - Measure water level and wind regime at the Giacomini site. The water-level range is critical to determining the wetland types based on the elevation of the dairy land. Water level at Sacramento Landing, in central Tomales Bay, will also be measured for comparison. As of November 2005, we have created a GCN, produced a detailed topographic map of the Giacomini site, and collected approximately three years of water-level and wind data at the Giacomini site and over one year of usable water-level data at the Sacramento Landing pier.

California↗

Occurrence of radium-224, radium-226 and radium-228 in water from the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands, southwestern and south-central New Jersey

This investigation is the first regionally focused study of the presence of natural radioactivity in water from the Vincentown and Wenonah-Mount Laurel aquifers, Englishtown aquifer system, and the Hornerstown and Red Bank Sands. Geologic materials composing the Vincentown and Wenonah-Mount Laurel aquifers and the Hornerstown and Red Bank Sands previously have been reported to contain radioactive (uranium-enriched) phosphatic strata, which is common in deposits from some moderate-depth coastal marine environments. The decay of uranium and thorium gives rise to natural radioactivity and numerous radioactive progeny, including isotopes of radium. Naturally occurring radioactive isotopes, especially those of radium, are of concern because radium is a known human carcinogen and ingestion (especially in water used for drinking) can present appreciable health risks. A regional network in southwestern and south-central New Jersey of 39 wells completed in the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands was sampled for determination of gross alpha-particle activity; concentrations of radium radionuclides, major ions, and selected trace elements; and physical properties. Concentrations of radium-224, radium-226, and radium-228 were determined for water from 28 of the 39 wells, whereas gross alpha-particle activity was determined for all 39. The alpha spectroscopic technique was used to determine concentrations of radium-224, which ranged from less than 0.5 to 2.7 pCi/L with a median concentration of less than 0.5pCi/L, and of radium-226, which ranged from less than 0.5 to 3.2 pCi/L with a median concentration of less than 0.5 pCi/L. The beta-counting technique was used to determine concentrations of radium-228. The concentration of radium-228 ranged from less than 0.5 to 4.3 pCi/L with a median of less than 0.5. Radium-228, when quantifiable, had the greatest concentration of the three radium radioisotopes in 9 of the 12 samples (75 percent). The concentration of radium-224 exceeded that of radium-226 in five of the six (83 percent) samples when both were quantifiable. The radium concentration distribution differed by aquifer, with the highest Ra-228 concentrations present in the Englishtown aquifer system and the highest Ra-226 concentrations present in the Wenonah-Mount Laurel aquifer. Radium-224 generally contributed a considerable amount of gross alpha-particle activity to water produced from all the sampled aquifers, but was not the dominant radionuclide as it is in water from the Kirkwood-Cohansey aquifer system, nor were concentrations greater than 1 pCi/L of radium-224 widespread. Gross alpha-particle activity was found to exceed the U.S Environmental Protection Agency (USEPA) Maximum Contaminant Level (MCL) of 15 pCi/L in one sample (16 pCi/L) from the Vincentown aquifer. A greater part of the gross alpha-particle activity in water from the Wenonah-Mount Laurel aquifer resulted from the decay of Ra-226 than did the gross alpha-particle activity in the other sampled aquifers; this relation is consistent with the concentration distribution of the Ra-226 itself. Concentrations of radium-224 correlate strongly with those of both radium-226 and radium-228 (Spearman correlation coefficients, r, +0.86 and +0.66, respectively). The greatest concentrations of radium-224, radium-226, and radium-228 were present in the most acidic ground water. All radium-224, radium-226, and radium-228 concentrations greater than 2.5 pCi/L were present in ground-water samples with a pH less than 5.0. The presence of combined radium-226 and radium-228 concentrations greater than 5 pCi/L in samples from the Vincentown and Wenonah-Mount Laurel aquifers and the Englishtown aquifer system was not nearly as common as in samples from the Kirkwood-Cohansey aquifer system, likely because of the slightly higher pH of water from these aquifers relative to that of Kirkwood-Cohansey aqu

New Jersey↗

Geologic field trip guide to Mount Mazama and Crater Lake Caldera, Oregon

Crater Lake partly fills one of the most spectacular calderas of the world—an 8 by 10 kilometer (km) basin more than 1 km deep formed by collapse of the Mount Mazama volcano during a rapid series of explosive eruptions ~7,700 years ago. Having a maximum depth of 594 meters (m), Crater Lake is the deepest lake in the United States. Crater Lake National Park, dedicated in 1902, encompasses 645 square kilometers (km 2 ) of pristine forested and alpine terrain, including the lake itself, and virtually all of Mount Mazama. The geology of the area was first described in detail by Diller and Patton (1902) and later by Williams (1942), whose vivid account led to international recognition of Crater Lake as the classic collapse caldera. Because of excellent preservation and access, Mount Mazama, Crater Lake caldera, and the deposits formed by the climactic eruption constitute a natural laboratory for study of volcanic and magmatic processes. For example, the climactic ejecta are renowned among volcanologists as evidence for systematic compositional zonation within a subterranean magma chamber. Mount Mazama’s climactic eruption also is important as the source of the widespread Mazama ash, a useful Holocene stratigraphic marker throughout the Pacific Northwest United States, adjacent Canada, and offshore. A detailed bathymetric survey of the floor of Crater Lake in 2000 (Bacon and others, 2002) provides a unique record of postcaldera eruptions, the interplay between volcanism and filling of the lake, and sediment transport within this closed basin. Knowledge of the geology and eruptive history of the Mount Mazama edifice, enhanced by the caldera wall exposures, gives exceptional insight into how large volcanoes of magmatic arcs grow and evolve. In addition, many smaller volcanoes of the High Cascades beyond the limits of Mount Mazama provide information on the flux of mantle-derived magma through the region. General principles of magmatic and eruptive processes revealed by geologic research at Crater Lake have been incorporated not only in scientific investigations elsewhere, but also in the practical evaluation of local hazards (Bacon and others, 1997b) and geothermal resources (Bacon and Nathenson, 1996). The 1:24,000-scale geologic map of Mount Mazama and Crater Lake caldera (Bacon, 2008) is unusual because it portrays bedrock (outcrop), surficial, and lake floor geology. Caldera wall geology is depicted in detail on the accompanying geologic panoramas, and bedrock geology is shown in a 1:50,000-scale geologic map. This field guide supersedes earlier geology guides of Crater Lake (Bacon, 1987, 1989).

Oregon↗

Assessment of nonpoint source chemical loading potential to watersheds containing uranium waste dumps associated with uranium exploration and mining, Browns Hole, Utah

During August of 2008, 35 solid-phase samples were collected from abandoned uranium waste dumps, undisturbed geologic background sites, and adjacent streambeds in Browns Hole in southeastern Utah. The objectives of this sampling program were (1) to assess impacts on human health due to exposure to radium, uranium, and thorium during recreational activities on and around uranium waste dumps on Bureau of Land Management lands; (2) to compare concentrations of trace elements associated with mine waste dumps to natural background concentrations; (3) to assess the nonpoint source chemical loading potential to ephemeral and perennial watersheds from uranium waste dumps; and (4) to assess contamination from waste dumps to the local perennial stream water in Muleshoe Creek. Uranium waste dump samples were collected using solid-phase sampling protocols. Solid samples were digested and analyzed for major and trace elements. Analytical values for radium and uranium in digested samples were compared to multiple soil screening levels developed from annual dosage calculations in accordance with the Comprehensive Environmental Response, Compensation, and Liability Act's minimum cleanup guidelines for uranium waste sites. Three occupancy durations for sites were considered: 4.6 days per year, 7.0 days per year, and 14.0 days per year. None of the sites exceeded the radium soil screening level of 96 picocuries per gram, corresponding to a 4.6 days per year exposure. Two sites exceeded the radium soil screening level of 66 picocuries per gram, corresponding to a 7.0 days per year exposure. Seven sites exceeded the radium soil screening level of 33 picocuries per gram, corresponding to a 14.0 days per year exposure. A perennial stream that flows next to the toe of a uranium waste dump was sampled, analyzed for major and trace elements, and compared with existing aquatic-life and drinking-water-quality standards. None of the water-quality standards were exceeded in the stream samples.

Utah↗

Source-water susceptibility assessment in Texas—Approach and methodology

Public water systems provide potable water for the public's use. The Safe Drinking Water Act amendments of 1996 required States to prepare a source-water susceptibility assessment (SWSA) for each public water system (PWS). States were required to determine the source of water for each PWS, the origin of any contaminant of concern (COC) monitored or to be monitored, and the susceptibility of the public water system to COC exposure, to protect public water supplies from contamination. In Texas, the Texas Commission on Environmental Quality (TCEQ) was responsible for preparing SWSAs for the more than 6,000 public water systems, representing more than 18,000 surface-water intakes or groundwater wells. The U.S. Geological Survey (USGS) worked in cooperation with TCEQ to develop the Source Water Assessment Program (SWAP) approach and methodology. Texas' SWAP meets all requirements of the Safe Drinking Water Act and ultimately provides the TCEQ with a comprehensive tool for protection of public water systems from contamination by up to 247 individual COCs. TCEQ staff identified both the list of contaminants to be assessed and contaminant threshold values (THR) to be applied. COCs were chosen because they were regulated contaminants, were expected to become regulated contaminants in the near future, or were unregulated but thought to represent long-term health concerns. THRs were based on maximum contaminant levels from U.S. Environmental Protection Agency (EPA)'s National Primary Drinking Water Regulations. For reporting purposes, COCs were grouped into seven contaminant groups: inorganic compounds, volatile organic compounds, synthetic organic compounds, radiochemicals, disinfection byproducts, microbial organisms, and physical properties. Expanding on the TCEQ's definition of susceptibility, subject-matter expert working groups formulated the SWSA approach based on assumptions that natural processes and human activities contribute COCs in quantities that vary in space and time; that increased levels of COC-producing activities within a source area may increase susceptibility to COC exposure; and that natural and manmade conditions within the source area may increase, decrease, or have no observable effect on susceptibility to COC exposure. Incorporating these assumptions, eight SWSA components were defined: identification, delineation, intrinsic susceptibility, point- and nonpoint-source susceptibility, contaminant occurrence, area-of-primary influence, and summary components. Spatial datasets were prepared to represent approximately 170 attributes or indicators used in the assessment process. These primarily were static datasets (approximately 46 gigabytes (GB) in size). Selected datasets such as PWS surface-water-intake or groundwater-well locations and potential source of contamination (PSOC) locations were updated weekly. Completed assessments were archived, and that database is approximately 10 GB in size. SWSA components currently (2011) are implemented in the Source Water Assessment Program-Decision Support System (SWAP-DSS) computer software, specifically developed to produce SWSAs. On execution of the software, the components work to identify the source of water for the well or intake, assess intrinsic susceptibility of the water- supply source, assess susceptibility to contamination with COCs from point and nonpoint sources, identify any previous detections of COCs from existing water-quality databases, and summarize the results. Each water-supply source's susceptibility is assessed, source results are weighted by source capacity (when a PWS has multiple sources), and results are combined into a single SWSA for the PWS.'SWSA reports are generated using the software; during 2003, more than 6,000 reports were provided to PWS operators and the public. The ability to produce detailed or summary reports for individual sources, and detailed or summary reports for a PWS, by COC or COC group was a unique capability of SWAP-DSS. In 2004, the TCEQ began a rotating schedule for SWSA wherein one-third of PWSs statewide would be assessed annually, or sooner if protection-program activities deemed it necessary, and that schedule has continued to the present. Cooperative efforts by the TCEQ and the USGS for SWAP software maintenance and enhancements ended in 2011 with the TCEQ assuming responsibility for all tasks.

Texas↗

Geophysical logs and water-quality data collected for boreholes Kimama-1A and -1B, and a Kimama water supply well near Kimama, southern Idaho

In September 2010, a research consortium led by scientists from Utah State University began drilling the first of three continuously cored boreholes on the Snake River Plain in southern Idaho. The goals of this effort, the Snake River Scientific Drilling Project, are to study the interaction between the Earth's crust and mantle, to identify potential geothermal energy sources, and to track the evolution of the Yellowstone hotspot on the Snake River Plain. The first borehole, located near Kimama, Idaho, is about 50 miles southwest of the U.S. Department of Energy's Idaho National Laboratory. Because geohydrologic data are scarce for that area of the central Snake River Plain, the Kimama borehole, completed in January 2011, provided a unique opportunity to collect geophysical and water-chemistry data from the eastern Snake River Plain aquifer system, downgradient of the laboratory. Therefore, in conjunction with the Snake River Scientific Drilling Project, scientists from the U.S. Geological Survey's Idaho National Laboratory Project Office conducted geophysical logging and collected water samples at the Kimama site. Wireline geophysical logs were collected for the diverging borehole, Kimama-1A and -1B, from land surface to 976 and 2,498 feet below land surface (BLS), respectively. Water samples were collected from Kimama-1A at depths near 460 and 830 feet BLS, and from the Kimama Water Supply (KWS) well located about 75 feet away. Geophysical log data included a composite of natural gamma, neutron, gamma-gamma dual density, and gyroscopic analysis for boreholes Kimama-1A and -1B. Geophysical logs depicted eight sediment layers (excluding surficial sediment) ranging from 4 to 60 feet in thickness. About 155 individual basalt flows were identified, ranging from less than 3 feet to more than 175 feet in thickness (averaging 15 feet) for borehole Kimama-1B (0 to 2,498 feet BLS). Sediment and basalt contacts were selected based on geophysical traces and were confirmed with visual inspection of core photographs. Temperature logs from the water table surface (about 260 feet BLS) to the bottom of borehole Kimama-1B (2,498 feet BLS) were nearly isothermal, ranging from about 62 to 64 degrees Fahrenheit. Gyroscopic data revealed that borehole Kimama-1B begins to separate from borehole Kimama-1A near a depth of 676 feet BLS. Drillhole azimuth and horizontal deviation at total logged depth for boreholes Kimama-1A and -1B were 172.6 and 188.3 degrees and 25.9 and 82.0 feet, respectively. Water samples were collected and analyzed for common ions; selected trace elements; nutrients; isotopes of hydrogen, oxygen, and carbon; and selected radionuclides. One set of water samples was collected from the KWS well and the two other sample sets were collected from borehole Kimama-1A near 460 and 830 feet BLS. With one exception, data for all three zones sampled near Kimama generally indicated that the water chemistry was similar. The exception was found in the deepest zone in borehole Kimama-1A (830 feet BLS) where concentrations probably were affected by the drilling mud. A comparison of the inorganic, organic, and stable chemistry data between the KWS well and the 460-foot zone in borehole Kimama-1A indicated similar chemistry of the aquifer water, except for some variability with nitrate plus nitrite, orthophosphate, iron, zinc, and carbon-14. Radionuclide concentrations were either less than reporting levels or at background levels for the eastern Snake River Plain aquifer.

Idaho↗

Water management, agriculture, and ground-water supplies

Encyclopedic data on world geography strikingly illustrate the drastic inequity in the distribution of the world's water supply. About 97 percent of the total volume of water is in the world's oceans. The area of continents and islands not under icecaps, glaciers, lakes, and inland seas is about 57.5 million square miles, of which 18 million (36 percent) is arid to semiarid. The total world supply of water is about 326.5 million cubic miles, of which about 317 million is in the oceans and about 9.4 million is in the land areas. Atmospheric moisture is equivalent to only about 3,100 cubic miles of water. The available and accessible supply of ground water in the United States is somewhat more than 53,000 cubic miles (about 180 billion acre ft). The amount of fresh water on the land areas of the world at any one time is roughly 30,300 cubic miles and more than a fourth of this is in large fresh-water lakes on the North American Continent. Annual recharge of ground water in the United States may average somewhat more than 1 billion acre-feet yearly, but the total volume of ground water in storage is equivalent to all the recharge in about the last 160 years. This accumulation of ground water is the nation's only reserve water resource, but already it is being withdrawn or mined on a large scale in a few areas. The principal withdrawals of water in the United States are for agriculture and industry. Only 7.4 percent of agricultural land is irrigated, however; so natural soil moisture is the principal source of agricultural water, and on that basis agriculture is incomparably the largest water user. In view of current forecasts of population and industrial expansion, new commitments of water for agriculture should be scrutinized very closely, and thorough justification should be required. The 17 Western States no longer contain all the large irrigation developments. Nearly 10 percent of the irrigated area is in States east of the western bloc, chiefly in several Southeastern States. Ground water is not completely 'self-renewing' because, where it is being mined, the reserve is being diminished and the reserve would be renewed only if pumping were stopped. Water is being mined at the rate of 5 million acre-feet per year in Arizona and 6 million in the High Plains of Texas. In contrast, water has been going into storage in the Snake River Plain of Idaho, where deep percolation from surface-water irrigation has added about 10 million acre-feet of storage since irrigation began. Situations in California illustrate problems of land subsidence resulting from pumping and use of water, and deterioration of ground-water reservoirs due to sea-water invasion. Much water development in the United States has been haphazard and rarely has there been integrated development of ground water and surface water. Competition is sharpening and new codes of water law are in the making. New laws, however, will not prevent the consequences of bad management. An important task for water management is to recognize the contingencies that may arise in the future and to prepare for them. The three most important tasks at hand are to make more efficient use of water, to develop improved quantitative evaluations of water supplies arid their quality, and to develop management practices which are based on scientific hydrology.

Circular↗

Characterization of dissolved and particulate natural organic matter (NOM) in Neversink Reservoir, New York

Natural organic matter (NOM) was isolated from the water of the Neversink Reservoir, part of the New York City water supply, located in the Catskill Mountains of New York. The NOM was fractionated into the following nine different fractions by the isolation procedure: (1) coarse particulates, (2) fine-particulate organics, (3) solvent-extractable organics, (4) hydrophobic neutrals (HPON fraction), (5) dissolved colloids, (6) bases, (7) hydrophobic acids (HPOA), (8) transphilic acids + neutrals (TPI-A+N), and (9) hydrophilic acids + neutrals (HPI-A+N). Each of these fractions, with exception of the first and the third which were too small for the complete series of analyses, was characterized by elemental, carbohydrate, and amino acid analyses, and by nuclear magnetic resonance and infrared spectrometry. The data obtained from these analyses indicate (1) that the fine-particulate organics and colloids are mainly composed of peptidoglycans, and lipopolysaccharides derived from algal, bacterial, and fungal cell walls, (2) that the HPO-N fraction most likely consists of a mixture of alicyclic terpenes and carbohydrates, (3) that the HPOA fraction consists mainly of lignin components conjugated to carbohydrates, (4) that the TPI-A+N and the HPI-A+N fractions most likely represent complex mixtures of relatively low molecular weight carboxylic acids derived from terpenes, carbohydrates, and peptides, and (5) that the base fraction is composed of free amino acids, browning reaction products, and peptide fragments.

Scientific Investigations Report↗

Present and Reference Concentrations and Yields of Suspended Sediment in Streams in the Great Lakes Region and Adjacent Areas

In-stream suspended sediment and siltation and downstream sedimentation are common problems in surface waters throughout the United States. The most effective way to improve surface waters impaired by sediments is to reduce the contributions from human activities rather than try to reduce loadings from natural sources. Total suspended sediment/solids (TSS) concentration data were obtained from 964 streams in the Great Lakes, Ohio, Upper Mississippi, and Souris-Red-Rainy River Basins from 1951 to 2002. These data were used to estimate median concentrations, loads, yields, and volumetrically (flow) weighted (VW) concentrations where streamflow data were available. SPAtial Regression-Tree Analysis (SPARTA) was applied to land-use-adjusted (residualized) TSS data and environmental-characteristic data to determine the natural factors that best described the distribution of median and VW TSS concentrations and yields and to delineate zones with similar natural factors affecting TSS, enabling reference or natural concentrations and yields to be estimated. Soil properties (clay and organic-matter content, erodibility, and permeability), basin slope, and land use (percentage of agriculture) were the factors most strongly related to the distribution of median and VW TSS concentrations. TSS yields were most strongly related to amount of precipitation and the resulting runoff, and secondarily to the factors related to high TSS concentrations. Reference median TSS concentrations ranged from 5 to 26 milligrams per liter (mg/L), reference median annual VW TSS concentrations ranged from 10 to 168 mg/L, and reference TSS yields ranged from about 980 to 90,000 kilograms per square kilometer per year. Independent streams (streams with no overlapping drainage areas) with TSS data were ranked by how much their water quality exceeded reference concentrations and yields. Most streams exceeding reference conditions were in the central part of the study area, where agricultural activities are the most intensive; however, other sites exceeding reference conditions were identified outside of this area. Whether concentrations or yields should be considered in guiding rehabilitation efforts depends on whether in-stream or downstream effects are more important. Although this study attempted to obtain all available water-quality data for the study area, any actual prioritization of sites for remediation would need to rely on more extensive data collection or numerical models that can accurately simulate the effects of various human activities in a range of environmental settings.

Scientific Investigations Report↗

Status and understanding of groundwater quality in the Santa Clara River Valley, 2007-California GAMA Priority Basin Project

Groundwater quality in the approximately 460-square-mile Santa Clara River Valley study unit was investigated from April through June 2007 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project is conducted by the U.S. Geological Survey (USGS) in collaboration with the California State Water Resources Control Board and the Lawrence Livermore National Laboratory. The Santa Clara River Valley study unit contains eight groundwater basins located in Ventura and Los Angeles Counties and is within the Transverse and Selected Peninsular Ranges hydrogeologic province. The Santa Clara River Valley study unit was designed to provide a spatially unbiased assessment of the quality of untreated (raw) groundwater in the primary aquifer system. The assessment is based on water-quality and ancillary data collected in 2007 by the USGS from 42 wells on a spatially distributed grid, and on water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer system was defined as that part of the aquifer system corresponding to the perforation intervals of wells listed in the CDPH database for the Santa Clara River Valley study unit. The quality of groundwater in the primary aquifer system may differ from that in shallow or deep water-bearing zones; for example, shallow groundwater may be more vulnerable to surficial contamination. Eleven additional wells were sampled by the USGS to improve understanding of factors affecting water quality.The status assessment of the quality of the groundwater used data from samples analyzed for anthropogenic constituents, such as volatile organic compounds (VOCs) and pesticides, as well as naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of untreated groundwater resources in the primary aquifers of the Santa Clara River Valley study unit, not the quality of treated drinking water delivered to consumers. Relative-concentrations (sample concentration divided by health- or aesthetic-based benchmark concentration) were used for evaluating groundwater quality for those constituents that have Federal and (or) California benchmarks. A relative-concentration greater than 1.0 indicates a concentration greater than a benchmark. For organic and special interest constituents, relative-concentrations were classified as high (greater than 1.0); moderate (greater than 0.1 and less than or equal to 1.0); and low (less than or equal to 0.1). For inorganic constituents, relative-concentrations were classified as high (greater than 1.0); moderate (greater than 0.5 and less than or equal to 1.0); and low (less than or equal to 0.5). Aquifer-scale proportion was used as the primary metric in the status assessment for evaluating regional-scale groundwater quality. High aquifer-scale proportion is defined as the areal percentage of the primary aquifer system with relative-concentrations greater than 1.0. Moderate and low aquifer-scale proportions are defined as the areal percentage of the primary aquifer system with moderate and low relative-concentrations, respectively. Two statistical approaches, grid-based and spatially weighted, were used to evaluate aquifer-scale proportions for individual constituents and classes of constituents. Grid-based and spatially weighted estimates were comparable in the Santa Clara River Valley study unit (within 90 percent confidence intervals). The status assessment showed that inorganic constituents were more prevalent and relative-concentrations were higher than for organic constituents. For inorganic constituents with human-health benchmarks, relative-concentrations (of one or more constituents) were high in 21 percent of the primary aquifer system areally, moderate in 30 percent, and low or not detected in 49 percent. Inorganic constituents with human-health benchmarks with high aquifer-scale proportions were nitrate (15 percent of the primary aquifer system), gross alpha radioactivity (14 percent), vanadium (3.4 percent), boron (3.2 percent), and arsenic (2.3 percent). For inorganic constituents with aesthetic benchmarks, relative-concentrations (of one or more constituents) were high in 54 percent of the primary aquifer system, moderate in 41 percent, and low or not detected in 4 percent. The inorganic constituents with aesthetic benchmarks with high aquifer-scale proportions were total dissolved solids (35 percent), sulfate (22 percent), manganese (38 percent), and iron (22 percent). In contrast, the results of the status assessment for organic constituents with human-health benchmarks showed that relative-concentrations were high in 0 percent (not detected above benchmarks) of the primary aquifer system, moderate in 2.4 percent, and low or not detected in 97 percent. Relative-concentrations of the special interest constituent, perchlorate, were moderate in 12 percent of the primary aquifer system and low or not detected in 88 percent. Relative-concentrations of two VOCs-carbon tetrachloride and trichloroethene (TCE)-were moderate in 2.4 percent of the primary aquifer system. One VOC-chloroform (water disinfection byproduct)-was detected in more than 10 percent of the primary aquifer system but at low relative-concentrations. Of the 88 VOCs and gasoline oxygenates analyzed, 71 were not detected. Pesticides were low or not detected in 100 percent of the primary aquifer system. Of the 118 pesticides and pesticide degradates analyzed, 13 were detected and 5 of those had human-health benchmarks. Two of these five pesticides-simazine and atrazine-were detected in more than 10 percent of the primary aquifer system. The second component of this study, the understanding assessment, was to identify the natural and human factors that affect groundwater quality on the basis of the evaluation of land use, physical characteristics of the wells, and geochemical conditions of the aquifer. Results from these analyses are used to explain the occurrence and distribution of selected constituents in the primary aquifer system of the Santa Clara River Valley study unit. The understanding assessment indicated that water quality varied spatially primarily in relation to depth, groundwater age, reduction-oxidation conditions, pH, and location in the regional groundwater flow system. High and moderate relative-concentrations of nitrate and low relative-concentrations of pesticides were correlated with shallow depths to top-of-perforation, and with high dissolved oxygen. Groundwater of modern and mixed ages had higher nitrate than pre-modern-age groundwater. Decreases in concentrations of total dissolved solids (TDS) and sulfate were correlated with increases in pH. This relationship probably indicates relations of these constituents with increasing depth across most of the Santa Clara River Valley study unit. Previous studies have indicated multiple sources of high concentrations of TDS and sulfate and multiple geochemical processes affecting these constituents in the Santa Clara River Valley study unit. Manganese and iron concentrations were highest in pre-modern-age groundwater at depth and in the downgradient area of the Santa Clara River Valley study unit (closest to the coastline), indicating the prevalence of reducing groundwater conditions in these aquifer zones.

Scientific Investigations Report↗

Hydrologic and sediment data collected from selected basins at the Fort Leonard Wood Military Reservation, Missouri--2010-11

Commercial and residential development within a basin often increases the amount of impervious area, which changes the natural hydrologic response to storm events by increasing runoff. Land development and disturbance combined with increased runoff from impervious areas potentially can increase sediment transport. At the Fort Leonard Wood Military Reservation in Missouri, there has been an increase in population and construction activities in the recent past, which has initiated an assessment of the hydrology in selected basins. From April 2010 to December 2011, the U.S. Geological Survey, in cooperation with the U.S. Army Maneuver Support Center at the Fort Leonard Wood Military Reservation, collected hydrologic and suspended-sediment concentration data in six basins at Fort Leonard Wood. Storm-sediment concentration, load, and yield varied from basin to basin and from storm to storm. In general, storm-sediment yield, in pounds per square mile per minute, was greatest from Ballard Hollow tributary (06928410) and Dry Creek (06930250), and monthly storm-sediment yield, in tons per square mile, estimates were largest in Ballard Hollow tributary (06928410), East Gate Hollow tributary (06930058), and Dry Creek (06930250). Sediment samples, collected at nine sites, primarily were collected using automatic samplers and augmented with equal-width-increment cross-sectional samples and manually collected samples when necessary. Storm-sediment load and yield were computed from discharge and suspended-sediment concentration data. Monthly storm-sediment yields also were estimated from the total storm discharge and the mean suspended-sediment concentration at each given site.

Missouri↗

2010 Joint United States-Canadian Program to explore the limits of the Extended Continental Shelf aboard U.S. Coast Guard Cutter Healy--Cruise HLY1002

In August and September 2010, the U.S. Geological Survey, in cooperation with Natural Resources Canada, Geological Survey of Canada, conducted bathymetric and geophysical surveys in the Beaufort Sea and eastern Arctic Ocean aboard the U.S. Coast Guard Cutter Healy. The principal objective of this mission to the high Arctic was to acquire data in support of a delineation of the outer limits of the U.S. and Canadian Extended Continental Shelf in the Arctic Ocean, in accordance with the provisions of Article 76 of the United Nations Convention on the Law of the Sea. The Healy was accompanied by the Canadian Coast Guard icebreaker Louis S. St-Laurent. The scientific parties on board the two vessels consisted principally of staff from the U.S. Geological Survey (Healy), and the Geological Survey of Canada and the Canadian Hydrographic Service (Louis). The crew also included marine-mammal observers, Native-community observers, ice observers, and biologists conducting research of opportunity in the Arctic Ocean. Despite interruptions necessitated by three medical emergencies, the joint survey proved largely successful. The Healy collected 7,201 trackline-kilometers of swath (multibeam) bathymetry (47,663 square kilometers) and CHIRP subbottom data, with accompanying marine gravity measurements, and expendable bathythermograph data. The Louis acquired 3,673 trackline-kilometers of multichannel seismic (airgun) deep-penetration reflection data along 25 continuous profiles, as well as 34 sonobuoy refraction stations and 9,500 trackline-kilometers of single-beam bathymetry. The coordinated efforts of the two vessels resulted in seismic-reflection-profile data that were of much higher quality and continuity than if the data had been acquired with a single vessel alone. The equipment-failure rate of the seismic equipment aboard the Louis was greatly reduced when the Healy led as the ice breaker. When ice conditions proved too severe to deploy the seismic system, the Louis led the Healy, resulting in much improved quality of the swath bathymetric and CHIRP subbottom data in comparison with data collected either by the Healy in the lead or the Healy working alone. During periods when the Healy was operating alone (principally when the Louis was diverted for emergency medical evacuations or ship repairs), the Healy was able to deploy a piston-core-sampler (10 meters maximum potential recovery depending on configuration). The coring operations resulted in recovery of cores at five locations ranging from 2.4 to 5.7 meters in length from water depths ranging from 1,157 to 3,700 meters. One of these cores sited on the Alaskan margin recovered the first reported occurrence of methane hydrate from the Arctic Ocean. Ancillary science objectives, including ice observations and deployment of ice-monitoring buoys and water-column sampling to measure acidification of Arctic waters were successfully conducted. The water-column sampling included using 10 full-ocean-depth, water-sampling casts with accompanying conductivity-temperature-depth measurements. Except for the data deemed proprietary, data from the cruise have been archived and are available for download at the National Geophysical Data Center and at cooperating organizations. Outreach staff and guest teachers aboard the two vessels provided near-real-time connection between the research activities and the public through online blogs, web pages, and other media.

Open-File Report↗

Application of a watershed model (HSPF) for evaluating sources and transport of pathogen indicators in the Chino Basin drainage area, San Bernardino County, California

A watershed model using Hydrologic Simulation Program-FORTRAN (HSPF) was developed for the urbanized Chino Basin in southern California to simulate the transport of pathogen indicator bacteria, evaluate the flow-component and land-use contributions to bacteria contamination and water-quality degradation throughout the basin, and develop a better understanding of the potential effects of climate and land-use change on water quality. The calibration of the model for indicator bacteria was supported by historical data collected before this study and by samples collected by the U.S. Geological Survey from targeted land-use areas during storms in water-year 2004. The model was successfully calibrated for streamflow at 5 gage locations representing the Chino Creek and Mill Creek drainages. Although representing pathogens as dissolved constituents limits the model's ability to simulate the transport of pathogen indicator bacteria, the bacteria concentrations measured over the period 1998-2004 were well represented by the simulated concentrations for most locations. Hourly concentrations were more difficult to predict because of high variability in measured bacteria concentrations. In general, model simulations indicated that the residential and commercial land uses were the dominant sources for most of the pathogen indicator bacteria during low streamflows. However, simulations indicated that land used for intensive livestock (dairies and feedlots) and mixed agriculture contributed the most bacteria during storms. The calibrated model was used to evaluate how various land use, air temperature, and precipitation scenarios would affect flow and transport of bacteria. Results indicated that snow pack formation and melt were sensitive to changes in air temperature in the northern, mountainous part of the Chino Basin, causing the timing and magnitude of streamflow to shift in the natural drainages and impact the urbanized areas of the central Chino Basin. The relation between bacteria concentrations and air temperature was more complicated, and did not substantially affect the quality of water discharging from the Chino Basin into the Santa Ana River. Changes in precipitation had a greater basin-wide affect on bacteria concentrations than changes in air temperature, and varied according to location. Drainages representing natural conditions had a decrease in bacteria concentrations in correlation with an increase in precipitation, whereas drainages in the central and southern part of the Chino Basin had an increase in bacteria concentrations. Drier climate conditions tended to result in higher sensitivity of simulated bacteria concentrations to changes in precipitation. Simulated bacteria concentrations in wetter climates were usually less sensitive to changes in precipitation because bacteria transport becomes more dependent on the land-use specified bacteria loading rates and the storage limits. Bacteria contamination from impervious-area runoff is affected to a greater degree by drier climates, whereas contamination from pervious-area runoff is affected to a greater degree by wetter climates. Model results indicated that the relation between precipitation, runoff, and bacteria contamination is complicated because after the initial bacteria washoff and transport from the land surfaces during the beginning of a storm period, subsequent runoff has fewer bacteria available for washoff, which then dilutes the concentrations of bacteria in the downstream reach. It was illustrated that pathogen indicator bacteria transport depends most significantly on the relation of imperviousness to runoff, which controls the frequency, and often the magnitude, of transport, and on the contribution of higher bacteria loading rates used for pervious land areas, especially intensive feedlots, to the infrequent, but very high, peaks of bacteria contamination. The indicator bacteria transport model for the Chino Basin was based on the assumption that no

California↗

Monitoring plant tissue nitrogen isotopes to assess nearshore inputs of nitrogen to Lake Crescent, Olympic National Park, Washington

Mats of filamentous-periphytic algae present in some nearshore areas of Lake Crescent, Olympic National Park, Washington, may indicate early stages of eutrophication from nutrient enrichment of an otherwise highly oligotrophic lake. Natural abundance ratios of stable isotopes of nitrogen (δ 15 N) measured in plant tissue growing in nearshore areas of the lake indicate that the major source of nitrogen used by these primary producing plants is derived mainly from atmospherically fixed nitrogen in an undeveloped forested ecosystem. Exceptions to this pattern occurred in the Barnes Point area where elevated δ 15 N ratios indicate that effluent from septic systems also contribute nitrogen to filamentous-periphytic algae growing in the littoral zone of that area. Near the Lyre River outlet of Lake Crescent, the δ 15 N of filamentous-periphytic algae growing in close proximity to the spawning areas of a unique species of trout show little evidence of elevated δ 15 N indicating that nitrogen from on-site septic systems is not a substantial source of nitrogen for these plants. The δ 15 N data corroborate estimates that nitrogen input to Lake Crescent from septic sources is comparatively small relative to input from motor vehicle exhaust and vegetative sources in undeveloped forests, including litterfall, pollen, and symbiotic nitrogen fixation. The seasonal timing of blooms of filamentous-periphytic algal near the lake shoreline is also consistent with nitrogen exported from stands of red alder trees ( Alnus rubra ). Isotope biomonitoring of filamentous-periphytic algae may be an effective approach to monitoring the littoral zone for nutrient input to Lake Crescent from septic sources.

Washington↗

Great and Little Miami River Basins

Introduction Implementation of a National Water Quality Assessment (NAWQA) Program study in the The Great and Little Miami River Basins area will increase scientific understanding of natural processes and human activities that affect the quality of water in streams and aquifers. This information will benefit water-resource managers that need, but often lack, the data required to implement effective water-quality management actions and evaluate long-term changes in water quality. Water quality has improved significantly in the Great and Little Miami River Basins over the past few decades because of improvements in the treatment of municipal and industrial wastes. However, the effects of industrialization and urbanization on the quality of rivers and ground-water resources remain a priority concern of water-resource managers and planners, state and local governments, and citizen groups. Some of these effects relate to nonpoint sources of contaminants and are the subject of ongoing research and watershed management projects such as the Lower Great Miami Watershed Enhancement Program, the Little Miami Partnership, the Stillwater Watershed Project, Indian Lake Watershed Project, and the Miami Conservancy District's Groundwater 2000 Program. Water resource managers in the Great and Little Miami River Basins area are currently addressing the following water-quality issues: Contamination of the sole-source Miami Valley aquifer by syntheticorganic chemicals, trace elements, and radionuclides. Degradation of surface- and ground-water quality by urban and agricultural sources of fertilizers and pesticides. Assessing the relative importance of point and nonpoint sources to contaminant loads in the Great and Little Miami Rivers. Habitat degradation and decreases in stream biodiversity as a result ofurbanization Occurrence of water-borne pathogens in streams and shallow ground waterin rural and urban land-use settings. Effect of septic systems and combined sewer overflows on surface- andshallow ground-water quality. •Disruption and fragmentation of stream habitats by low dams and impoundments and their effects on fish and benthic invertebratecommunities.

Fact Sheet↗

U.S. Geological Survey Karst Interest Group Proceedings, Bowling Green, Kentucky, May 27-29, 2008

*INTRODUCTION AND ACKNOWLEDGMENTS* Karst aquifer systems are present throughout parts of the United States and some of its territories. The complex depositional environments that form carbonate rocks combined with post-depositional tectonic events and the diverse climatic regimes under which these rocks were formed result in unique hydrologic systems. The dissolution of calcium carbonate and the subsequent development of distinct and beautiful landscapes, caverns, and springs have resulted in some karst areas of the United States being designated as national or state parks and commercial caverns. Karst aquifers and landscapes that form in tropical areas, such as the north coast of Puerto Rico, differ greatly from karst areas in more arid climates, such as central Texas or western South Dakota. Many of these public and private lands contain unique flora and fauna associated with the hydrologic systems in these karst areas. As a result, multiple Federal, State, and local agencies have an interest in the study of karst terrains. Carbonate sediments and rocks (limestone and dolomite) are composed of greater than 50 percent carbonate minerals and the predominant carbonate mineral is calcium carbonate or limestone (CaCO3). Unlike terrigenous clastic sedimentation, the depositional processes that produce carbonate rocks are complex, involving both biological and physical processes. These depositional processes impact greatly the development of permeability of the sediments. Carbonate minerals readily dissolve or precipitate depending on the chemistry of the water flowing through the rock, thus the study of both marine and meteoric diagenesis of carbonate sediments is multidisciplinary. Even with a better understanding of the depositional environment and subsequent diagenesis, the dual porosity nature of karst aquifers presents challenges to scientists attempting to study ground-water flow and contaminant transport. Many of the major springs and aquifers in the United States are developed in carbonate rocks and karst areas. These aquifers and the springs that discharge from them, serve as major water-supply sources and as unique biological habitats. Commonly, there is competition for the water resources of karst aquifers, and urban development in karst areas can impact the ecosystem and water quality of these aquifers. The concept for developing a Karst Interest Group evolved from the November 1999 National Ground-Water Meeting of the U.S. Geological Survey (USGS), Water Resources Division. As a result, the Karst Interest Group was formed in 2000. The Karst Interest Group is a loose-knit grass-roots organization of USGS employees devoted to fostering better communication among scientists working on, or interested in, karst hydrology studies. The mission of the Karst Interest Group is to encourage and support interdisciplinary collaboration and technology transfer among USGS scientists working in karst areas. Additionally, the Karst Interest Group encourages cooperative studies between the different disciplines of the USGS and other Department of Interior agencies and university researchers or research institutes. The first Karst Interest Group workshop was held in St. Petersburg, Florida, February 13-16, 2001, in the vicinity of karst features of the Floridan aquifer system. The proceedings of that first meeting, Water-Resources Investigations Report 01-4011 are available online at: http://water.usgs.gov/ogw/karst/ The second Karst Interest Group workshop was held August 20-22, 2002, in Shepherdstown, West Virginia, in close proximity to the carbonate aquifers of the northern Shenandoah Valley. The proceedings of the second workshop were published in Water-Resources Investigations Report 02-4174, which is available online at the previously mentioned website. The third workshop of the Karst Interest Group was held September, 12-15, 2005, in Rapid City, South Dakota, which is in close proximity to karst features

Scientific Investigations Report↗

Effects of habitat characteristics and water quality on macroinvertebrate communities along the Neversink River in southeastern New York, 1991-2001

The Neversink River, in the Catskill Mountains of southeastern New York State, feeds the Neversink Reservoir, which diverts 85 percent of the river’s flow to New York City. Acidification of several headwater reaches has affected macroinvertebrate assemblages throughout the river system above the reservoir, and the alteration of flow conditions below the reservoir dam has affected macroinvertebrate assemblages for at least 10 kilometers downstream from the reservoir. In 1999, the U.S. Geological Survey, in cooperation with The Nature Conservancy, compiled data from 30 stream reaches to quantify the effects of acidification and of the reservoir on the structure and function of macroinvertebrate assemblages throughout the Neversink River. Acidic headwater reaches supported greater numbers of acid-tolerant chironomid taxa and fewer numbers of acid-sensitive Ephemeroptera and Trichoptera than neutral reaches, and fewer scraper individuals and more shredder individuals. The 14 reaches below the reservoir, with sharply decreased flows and altered flow patterns compared to reaches above the reservoir, supported more Chironomidae and fewer Ephemeroptera and Trichoptera than the upper reaches; they also had greater numbers of shredder individuals and fewer scraper and filterer individuals than reaches above the reservoir. Water-quality variables such as pH and aluminum concentration appear to have affected macroinvertebrate assemblages more strongly in the headwaters than below the reservoir, whereas physical-habitat variables such as mean channel width and water temperature have affected these assemblages more strongly downstream from the reservoir than in the headwaters. The water-quality changes due to acidification, combined with the decreased flows and lowered water temperatures below the reservoir, have disrupted downstream continuum of macroinvertebrate communities that would normally be observed from the headwaters to the mouth. The information presented herein provides a basis for further evaluation of the Neversink and similar river systems, and for assessment of the effectiveness of future conservation efforts.

New York↗