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Disease caused by environmental stressors

The use of the terms 'stress' and 'stressor' is sometimes inconsistent (e.g., Pickering, 1981). The term 'stressor' should be used to describe environmental or other factor intensities severe enough to require a compensatory response at any level of biological organization. A stressor is normally extrinsic. The term 'stress' indicates the organismic response initiated by the stressor, also at any level of biological organization. Thus, the original concept of Selye (1950) that stress is 'the sum of all the physiological responses by which an animal tries to maintain or re-establish a normal metabolism in the face of a physical or chemical force' has evolved into the concept that stress is the biological effect of any force that challenges homeostatic or stabilizing processes and extends them beyond their normal limits, at any level of biological organization - individual, population, or ecosystem (Esch and Hazen, 1978; Bayne, 1980).

Book chapter↗

The source of hydrothermal solutions at Puerto Maunabo and its bearing on the base-metal-potassium feldspar association in Puerto Rico

A quartz oligoclase porphyry exposed near Puerto Maunabo may provide evidence to further our understanding of the base-metal-potassium feldspar association known to occur in many of the porphyry-type copper deposits of Puerto Rico. The porphyry appears to be a magmatic differentiate on the border of the San Lorenzo batholith that may represent a source of mineralizing hydrothermal solutions. The porphyry intrudes an albitized quartz diorite border phase of the batholith that contains large roof pendants of metavolcanic rock. These roof pendants are mostly metamorphosed to greenschist metamorphic facies, but in the vicinity of Puerto Maunabo south of the porphyry, they reach amphibolite metamorphic facies; north of the porphyry, similar xenolithic lenses of metavolcanic rock appear to have been converted entirely to an oligoclase quartz felsite. The layered albitized quartz felsite has the same composition and texture as irregular veinlets in the albitized quartz diorite and as the groundmass in the porphyry. The K + ions arid basic ions of Fe +2 , Cu +2 , Mg +2 apparently were mobilized during final magmatic crystallization and then escaped as hydrothermal solutions that followed open conduits within a zone of structural weakness which also permitted the emplacement of the porphyry. The volcanic rock of Cerro Piedra Hueca, in contact with the albitized quartz diorite, and generally along strike west of the porphyry, has been altered to a quartz sericite rock entirely devoid of mafic silicates. This is the southeasternmost exposure of hydrothermally altered volcanic rock in the regional zone of northwest-trending faults that contains the principal porphyry-type copper deposits of Puerto Rico. The texture, mineralogy, and geologic environment of the porphyry at Puerto Maunabo are similar to those of the ore-bearing porphyries but differ in one important aspect. Most ore-bearing porphyries contain hydrothermal potassium feldspar and reddish-brown biotite intimately associated with the base-metal sulfides. In the porphyry of Puerto Maunabo, potassium feldspar is conspicuously absent, and only a trace of biotite is present; the only sulfide present is pyrite. The physical and chemical environment required to precipitate K + ions, either as potassium feldspar or biotite, apparently is very similar to that required to precipitate base-metal sulfides. At Puerto Maunabo, these conditions evidently did not prevail, and potassium and the base metals may have been carried in solution to a more favorable environment.

Puerto Maunabo↗

Pressure gradients and boiling as mechanisms for localizing ore in porphyry systems

Fluid inclusions in ore zones of porphyry systems indicate that extensive boiling of hydrothermal fluids accompanies deposition of ore and gangue minerals. The boiling commonly accompanied a change from a lithostatic to a hydrostatic environment during evolution of an epizonal stock. Pressure gradients near the margin of the stock can determine whether ore or only a diffuse zone of mineralization is formed. A sharp drop in pressure in an epizonal environment is more likely to cause extensive boiling than a comparable change in a deeper environment, as the slope of the boiling curve steepens with an increase 'in pressure. The drop in pressure causes the hydrothermal fluids to boil and creates a crackle (stockwork) breccia, which hosts the veinlets of gangue quartz and ore minerals. The boiling selectively partitions CO 2 , H 2 S, and HCl into the vapor phase, changing the pH, composition, ionic strength, and thus the solubility product of metal complexes in the remaining liquid and causing the ore and gangue to come out of solution. Fluid inclusions trapped from boiling solutions can exhibit several forms, depending on the physical and chemical conditions of the hydrothermal fluid from which they were trapped. In one case, inclusions when heated can homogenize to either liquid or vapor at the same temperature, which is the true boiling temperature. In another case, homogenization of various inclusions can occur through a range of temperatures. The latter case results from the trapping of mixture of liquid and vapor. Variations in salinity can result from boiling of the hydrothermal fluid, or intermittent incorporation of high-salinity fluids from the magma, or trapping of fluids of varying densities at pressure-temperature conditions above the critical point of the fluid. In places, paleopressure-temperature transition zones can be recognized by fluid-inclusion homogenization temperatures and phase relationships and by the presence of anhydrite daughter minerals. Boiling of a hydrothermal fluid in the porphyry environment affects light stable isotopes. Hydrogen is preferentially fractionated into the vapor phase from water boiling below 223°C; above this temperature deuterium is selectively enriched in the vapor phase. In certain environments boiling creates a vapor-dominated system in which the condensate is swept away by meteoric waters and the H/D in the residual fluids is progressively increased through time.

Utah↗

Volcanologists and the geologic past

Were volcanologists to be asked why they study active volcanoes, they would list many reasons: to understand their dynamics, to use them as windows into the earth, to warn of hazards, to provide nearly real-time information on rates of various physical and chemical processes, and many others. Near the bottom of the list would be "to understand the Earth's past." Generally, that task has been left to other corners of the earth sciences, and volcanologists have kept their sights on the present or near present without worrying much about what happened millions of years ago. But much can be gained from applying a volcanologic perspective to the interpretation of old rocks, and this gain enhances our understanding of both the past and the present.

Earthquakes & Volcanoes (USGS)↗

Results from the apollo-12 passive seismic experiment

The objective of the passive seismic experiment is to measure vibrations of the lunar surface produced by all natural and artificial sources of seismic energy and to use these data to deduce the internal structure and composition of the moon, the nature of forces which may cause deformation of the moon and moonquakes, and the numbers and masses of meteoroids striking the lunar surface. The ALSEP* seismometers can magnify lunar surface vibrations 10 million times. No instrument can operate on earth with this sensitivity, because weather and man produce too much seismic noise. To obtain answers to the above questions, seismic data must be combined with data from laboratory measurements of the physical and chemical properties of surface rocks, and many other geophyiscal and geochemical measurements. Thus far, we have had the opportunity to record data from two lunar seismic stations which were installed by the astronauts during Apollo misions and 12. The combined recording time from the stations is presently over 12 months, but there was no overlap to permit recording of the same event at two stations.

Earthquake Information Bulletin (USGS)↗

Hyperspectral analysis of rocky surfaces on the Earth and other planetary systems: Chapter 27

This book is focused on studies of vegetation on Earth using hyperspectral remote sensing methods. However, it is appropriate to extend the application of these methods out to other rocky bodies in our Solar System for a variety of reasons. First, minerals, soils, and rocks form the substrate on which vegetation grows on Earth. Compositional analyses of these components with hyperspectral data provide essential background information for distinguishing, identifying, and removing their effects on vegetation spectra. Second, variation in distribution, chemical and physical properties among soil and rock, has been demonstrated to have a significant effect on factors such as moisture retention, dust production, and the presence and distribution of biological species ranging from bacteria, fungi, grasses, shrubs, trees, and small mammals to humans [1]. These factors in turn can have profound influences on human health.

Book chapter↗

Selected achievements, science directions, and new opportunities for the WEBB small watershed research program

Over nearly two decades, the Water, Energy, and Biogeochemical Budgets (WEBB) small watershed research program of the U.S. Geological Survey (USGS) has documented how water and solute fluxes, nutrient, carbon, and mercury dynamics, and weathering and sediment transport respond to natural and humancaused drivers, including climate, climate change, and atmospheric deposition. Together with a continued and increasing focus on the effects of climate change, more investigations are needed that examine ecological effects (e.g., evapotranspiration, nutrient uptake) and responses (e.g., species abundances, biodiversity) that are coupled with the physical and chemical processes historically observed in the WEBB program. Greater use of remote sensing, geographic modeling, and habitat/watershed modeling tools is needed, as is closer integration with the USGS-led National Phenology Network. Better understanding of process and system response times is needed. The analysis and observation of land-use and climate change effects over time should be improved by pooling data obtained by the WEBB program during the last two decades with data obtained earlier and (or) concurrently from other research and monitoring studies conducted at or near the five WEBB watershed sites. These data can be supplemented with historical and paleo-environmental information, such as could be obtained from tree rings and lake cores. Because of the relatively pristine nature and small size of its watersheds, the WEBB program could provide process understanding and basic data to better characterize and quantify ecosystem services and to develop and apply indicators of ecosystem health. In collaboration with other Federal and State watershed research programs, the WEBB program has an opportunity to contribute to tracking the short-term dynamics and long-term evolution of ecosystem services and health indicators at a multiplicity of scales across the landscape.

Conference Paper↗

A manual to identify sources of fluvial sediment

Sediment is an important pollutant of concern that can degrade and alter aquatic habitat. A sediment budget is an accounting of the sources, storage, and export of sediment over a defined spatial and temporal scale. This manual focuses on field approaches to estimate a sediment budget. We also highlight the sediment fingerprinting approach to attribute sediment to different watershed sources. Determining the sources and sinks of sediment is important in developing strategies to reduce sediment loads to water bodies impaired by sediment. Therefore, this manual can be used when developing a sediment TMDL requiring identification of sediment sources. The manual takes the user through the seven necessary steps to construct a sediment budget: Decision-making for watershed scale and time period of interest Familiarization with the watershed by conducting a literature review, compiling background information and maps relevant to study questions, conducting a reconnaissance of the watershed Developing partnerships with landowners and jurisdictions Characterization of watershed geomorphic setting Development of a sediment budget design Data collection Interpretation and construction of the sediment budget Generating products (maps, reports, and presentations) to communicate findings. Sediment budget construction begins with examining the question(s) being asked and whether a sediment budget is necessary to answer these question(s). If undertaking a sediment budget analysis is a viable option, the next step is to define the spatial scale of the watershed and the time scale needed to answer the question(s). Of course, we understand that monetary constraints play a big role in any decision. Early in the sediment budget development process, we suggest getting to know your watershed by conducting a reconnaissance and meeting with local stakeholders. The reconnaissance aids in understanding the geomorphic setting of the watershed and potential sources of sediment. Identifying the potential sediment sources early in the design of the sediment budget will help later in deciding which tools are necessary to monitor erosion and/or deposition at these sources. Tools can range from rapid inventories to estimate the sediment budget or quantifying sediment erosion, deposition, and export through more rigorous field monitoring. In either approach, data are gathered and erosion and deposition calculations are determined and compared to the sediment export with a description of the error uncertainty. Findings are presented to local stakeholders and management officials. Sediment fingerprinting is a technique that apportions the sources of fine-grained sediment in a watershed using tracers or fingerprints. Due to different geologic and anthropogenic histories, the chemical and physical properties of sediment in a watershed may vary and often represent a unique signature (or fingerprint) for each source within the watershed. Fluvial sediment samples (the target sediment) are also collected and exhibit a composite of the source properties that can be apportioned through various statistical techniques. Using an unmixing-model and error analysis, the final apportioned sediment is determined.

Report↗

Water-quality data for the Flaming Gorge Reservoir area, Utah and Wyoming, 1969-72

This report presents the basic data that were collected by the U.S. Geological Survey during a study of the chemical quality of water in Flaming Gorge Reservoir. An interpretive report will follow. The basic data were collected from the reservoir during six sampling runs between October 1970 and September 1972. The reservoir was sampled for chemical analyses at 17 sites. Chemical and physical data were measured in situ at 34 sites. The sites are shown in figure 1 and the data are listed in tables 1 and 3-6.

Utah↗

A formalized approach to making effective natural resource management decisions for Alaska National Parks

A fundamental goal of the National Park Service (NPS) is the long-term protection and management of resources in the National Park System. Reaching this goal requires multiple approaches, including the conservation of essential habitats and the identification and elimination of potential threats to biota and habitats. To accomplish these goals, the NPS has implemented the Alaska Region Vital Signs Inventory and Monitoring (I&M) Program to monitor key biological, chemical, and physical components of ecosystems at more than 270 national parks. The Alaska Region has four networks—Arctic, Central, Southeast, and Southwest. By monitoring vital signs over large spatial and temporal scales, park managers are provided with information on the status and trajectory of park resources as well as a greater understanding and insight into the ecosystem dynamics. While detecting and quantifying change is important to conservation efforts, to be useful for formulating remedial actions, monitoring data must explicitly relate to management objectives and be collected in such a manner as to resolve key uncertainties about the dynamics of the system (Nichols and Williams 2006). Formal decision making frameworks (versus more traditional processes described below) allow for the explicit integration of monitoring data into decision making processes to improve the understanding of system dynamics, thereby improving future decisions (Williams 2011).

Alaska↗

Sulfur isotope analyses using the laser microprobe

Since the first studies of sulfur isotope variations in natural materials (Thode, 1949), it has been apparent that there are large and dramatic variations of 34 S/ 32 S ratios and that sulfur isotope studies are a powerful tool for interpreting the origins of sulfur-bearing minerals. However, sulfur is such a common element in the Earth's crust (sixteenth most abundant, averaging 0.03 wt %; Mason, 1966), and is involved in so many igneous, hydrothermal, biological, and surficial processes that a simple measurement of δ 34 S, without constraining geological, biological, and geochemical data, is often unenlightening. In many sedimentary and hydrothermal systems, geologists are confronted with multiple sulfur sources, large fractionations of sulfur isotopes during oxidation-reduction reactions that sometimes produce disequilibrium effects, and strong chemical and physical gradients at the site of mineral deposition. Despite significant advances in the understanding and utilization of sulfur isotopes to characterize ore-forming processes (Ohmoto, 1972; Ohmoto and Rye, 1979; Shanks et al., 1981; Janecky and Shanks, 1988), interpretations may be ambiguous and, in ancient ore deposits, difficult to test. Part of this difficulty has been due to an inability to resolve fine-scale spatial variations in isotopic fractionation between successive zones or between coexisting minerals.

Book chapter↗

Molluscan faunal distribution in Florida Bay, past and present: An integration of down-core and modern data

Statistical comparison of modern molluscan fauna to down-core molluscan assemblages in four cores elucidates changes in the Florida Bay ecosystem during the past 100 to 200 years. Fluctuations within molluscan faunal dominance and diversity patterns suggest a response to changing environmental conditions. Faunal dominance patterns indicate an increase in salinity in the northern transitional zone, and possibly the eastern portion of Florida Bay. Distinctive faunal shifts recorded at Russell Bank occur approximately between 1913 and 1933 and at Bob Allen mudbank between approximately 1900 and 1910. The period from approximately 1930 to 1980 within these cores shows rapid and dramatic fluctuations in species dominance and faunal richness. Beginning around 1980, the mussel Brachidontes exustus , which can tolerate diminished water quality and a wide range of salinities, increases in percent abundance in the upper portion of all four cores and becomes the dominant species at Russell Bank and Bob Allen Mudbank. While these fluctuations within assemblages are distinctive, they are not so profound that they represent a major shift in estuarine zonations within northern, eastern, and central Florida Bay during the past 100 to 200 years. The majority of the molluscan fauna that are present at the core sites today are generally present throughout the period of deposition. Fluctuations in the molluscan faunal record down-core primarily express changes in dominance and diversity within assemblages and do not reflect substantial changes in overall assemblages. It is these fluctuations in dominance and the appearance or disappearance of critical indicator species that are indicative of salinity changes. Understanding the dynamics of an ecosystem and the natural range of variation in the system over an extended period of time is a critical component of effective restoration. Analysis of the modern environment provides a means to interpret biological data preserved in cores, and to determine the physical and chemical variations in the environment indicated by the biota. Knowledge of the past provides the best insight to predicting the impact of future change on the environment.

Florida↗

Environmental models of mineral deposits- A state of the art

Although mineral deposits have been classified by their geologic and mineralogical characteristics for decades, the recognition that mineral deposits also could be classified by their environmental characteristics is relatively new. In the past 5 years, numerous advancements have been made in this subject area, building on the earlier work of economic geologists who classified geologic characteristics. Several different approaches to understanding the environmental behavior of mineral deposits and associated altered areas have been taken, ranging from wholesale assessments of large areas (millions of km 2 ) to detailed assessments of individual watersheds or individual mines. While these first attempts have succeeded in describing some of the environmental characteristics of ore deposits in a number of ways, many important “environmental variables” are not included in present descriptive models. For example, the models should be expanded in scope to include a more thorough treatment of climatic and ecoregional effects- embodying such physical environmental characteristics as precipitation, evaporation, temperature, and ground water-surface water interactions. More complete model descriptions will have applications to the determination of baselines and natural backgrounds in mined and unmined areas, as well as possible anticipated effects of new mining in a given area, and mitigation and remediation strategies. The challenge to geologists and geochemists is to incorporate a widely disparate set of physical and chemical characteristics of mineralized and altered zones at scales ranging from microscopic (sub-millimeter) to macroscopic (10’s to 100’s of kilometers). This paper presents an overview of the development of mineral deposit environmental models, the current state of the art, an evaluation of needed improvements, and expected advancements in this field.

Geologica Hungarica. Series geologica↗

Refining the Baseline Sediment Budget for the Klamath River, California

Four dams in the Klamath River Hydroelectric Project (KHP) in Oregon and California (Figure 1) are currently scheduled to be removed over a period of a few weeks or months, beginning in January 2021. The Klamath dam removal will be the largest in the world by almost all measures, and is an unprecedented opportunity to advance science of river responses to such events. The KHP contains approximately 10-12 million cubic meters of mostly fine sediment and model estimates suggest approximately 1/3-2/3 of this volume is expected to be eroded from reservoirs. Much of this sediment is expected to be eventually transported by the river to, or through, the Klamath River Estuary, a distance of more than 300 kilometers. To improve the success of restoration activities following dam removal, agencies must understand the baseline conditions for biological, chemical, and physical processes, prior to the removal. We expect large changes in water quality (turbidity, suspended sediment, dissolved oxygen, temperature, and algal toxins) and in fish habitat in the Hydroelectric Reach and the main-stem of the Klamath River to the ocean. For example, modeled sediment concentrations in the Klamath River during dam removal were estimated exceed 10,000 – 15,000 mg/L, depending on streamflows, location, and the dam removal process, and to remain > 100 – 1000 mg/L for months at a time. Final time to achieve background concentrations post dam removal may take over two years (Reclamation, 2011). Plans to assess many of these changes post-dam removal are still being formulated.

California, Oregon↗

Dynamic abiotic habitat

The factors affecting an organism can be divided into two general classes, abiotic and biotic. Abiotic factors include features of the physical and chemical environment, such as climate, water movement, and many aspects of water quality. Biotic factors refer to those involving living organisms and their interactions, such as the organisms and processes in a food web. We also distinguish between dynamic and stationary abiotic factors. Stationary abiotic factors are fixed in the environment and include things like landscape features (e.g., bays, channels, and surface elevations) that change relatively slowly over time. Dynamic abiotic factors vary over time and space at various scales ranging from sub-daily (e.g., tidal direction and velocity) to annually (e.g., total water inflow and outflow).

California↗

Energy-related rare earth element sources

Energy-related materials such as coal, coal-bearing wastes, and coal combustion products are traditionally thought of as sources or by-products of electric power generation. Increasingly, these materials are considered resources for their content of rare earth elements (REEs) and other useful constituents. In this chapter, we examine the distribution, modes of occurrence, and relative extractability of REEs from coal-derived materials. We also consider economic factors associated with recovery of REEs from these sources. While several coal-derived sources show promise for REE recovery at the pilot scale, in all cases, REE contents are much below those of primary ores, such that extraction and concentrating the REEs require new and innovative approaches that are largely developmental. Among coal-related sources, fly ash is the most REE-enriched, as REEs from coal are strongly retained in these refractory solids remaining after coal combustion. Partitioning of coal-derived elements into fly ash has been known for decades but this has yet to be commercially exploited. A key drawback shown in this chapter is that a significant fraction of REEs in fly ash is contained in highly insoluble aluminosilicate glasses that make up the largest portion of this material. In addition to testing chemical or physical pretreatment approaches to help improve the extractability of REEs from fly ash, current research is applying modern analytical approaches to better understand the distribution of REEs on increasingly smaller scales, in the interest of targeting their recovery. Next-most REE-enriched among coal-related materials are solid waste products of coal mining and wastes from coal preparation, both of which are REE-enriched relative to coal itself. These waste coals concentrate mineralogical constituents that are excluded during mining or removed during coal preparation because they do not contribute to the heating value of coal for power generation. Recovery of REEs from coal waste has shown promise at the pilot scale and has the added benefit of converting a waste into useful constituents. Total REE contents of commercial coals are, on average, much below the 300 parts per million interest level for REE recovery set by the U.S. Department of Energy (DOE). However, as reviewed in this chapter, certain horizons within coal beds show preferential REE enrichment and could be targeted by selective mining. Beyond this, certain coals are REE-enriched overall due to their unique geologic histories involving derivation from REE-enriched sediment sources, deposition of volcanic ash during coal formation, or interaction of coal with REE-bearing fluids. Acidic drainage from abandoned coal mines is produced by the breakdown of pyrite (FeS 2 ), which is unstable in oxygenated conditions. While these acidic fluids have lower REE contents than any of the coal-based solids described above, they are proportionally enriched in certain heavy rare earths, especially yttrium (Y). Precipitates from coal-based acid-mine drainage concentrate REEs to levels that are of interest for recovery, and these are also promising sources for extraction at the pilot scale.

Book chapter↗

Models for calculating density and vapor pressure of geothermal brines

In a model for estimating density of a brine, the density of a natural brine at a known temperature, pressure, and composition can be calculated from the densities of the component salt solutions in the complex brine. A model for estimating vapor pressure requires two direct or indirect estimates of the vapor pressure and uses a published "reference-substance principle" to extrapolate,; these data 200° to 300° above the temperature of the highest observation. The methods can be used to estimate the partial molal volume and partial molal enthalpy of H 2 O in the natural brine and the partial molal volume change and partial molal heat change for the H2O component in the vaporization process. The equations for density and vapor pressure and the derived thermochemical properties will help in designing turbines for operation with geothermal and geopressured brines, in optimizing production conditions, and in physical and chemical modeling of a geothermal reservoir.

Journal of Research of the U.S. Geological Survey↗

PHREEQ-N-AMDTreat+REYs water-quality modeling tools to evaluate acid mine drainage treatment strategies for recovery of rare-earth elements

The PHREEQ-N-AMDTreat+REYs water-quality modeling tools have the fundamental capability to simulate aqueous chemical reactions and predict the formation of metal-rich solids during the treatment of acid mine drainage (AMD). These new user-friendly, publicly available tools were expanded from the PHREEQ-N-AMDTreat tools to include the precipitation of rare-earth elements plus yttrium (REYs) and the adsorption of REYs onto hydrous Fe, Al, and Mn oxides. The tool set consists of a caustic titration model that indicates equilibrium surface and aqueous speciation of REYs as functions of pH and caustic agent, and a kinetics+adsorption model that simulates progressive changes in pH, major ions, and REYs in water and solids during sequential steps through passive and/or active treatment. Each model has a user interface (UI) that facilitates the input of water-quality data and adjustment to geochemical or treatment system variables; for example, retention time and aeration rate are adjustable parameters in the kinetics model. On-screen graphs display results of changes in metals and associated solute concentrations as functions of pH or retention time; details are summarized in output tables. A goal of such modeling is to identify strategies that could produce a concentrated REYs extract from AMD or mine waste leachate. For example, if REYs could be concentrated after first removing substantial Fe and Al, the final REYs-bearing phase(s) could be more efficiently processed for REYs recovery and, therefore, may represent a more valuable commodity. Preliminary modeling supports the hypothesis that Fe and Al can be removed at pH < 5.5 using conventional sequential oxidation and neutralization treatment processes without removing REYs, and that further increasing pH can promote the adsorption of REYs by hydrous Mn oxides. Alternatively, chemicals such as oxalate or phosphate may be added to precipitate REYs compounds following initial steps to decrease Fe and Al concentrations. The aqueous geochemical model framework is comprehensive and permits evaluation of effects from interactive chemical and physical variables. Field studies that demonstrate REYs attenuation from AMD and corresponding solid-phase formation during specific treatment steps plus laboratory studies of aqueous/solid interactions are helpful to corroborate, refine, and constrain modelin parameters.

Conference Paper↗