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Review of a model to assess stranding of juvenile salmon by ship wakes along the Lower Columbia River, Oregon and Washington

Long period wake waves from deep draft vessels have been shown to strand small fish, particularly juvenile Chinook salmon Oncorhynchus tschawytcha, in the lower Columbia River (LCR). The U.S. Army Corps of Engineers is responsible for maintaining the shipping channel in the LCR and recently conducted dredging operations to deepen the shipping channel from an authorized depth of 40 feet(ft) to an authorized depth of 43 ft (in areas where rapid shoaling was expected, dredging operations were used to increase the channel depth to 48 ft). A model was developed to estimate stranding probabilities for juvenile salmon under the 40- and 43-ft channel scenarios, to determine if channel deepening was going to affect wake stranding (Assessment of potential stranding of juvenile salmon by ship wakes along the Lower Columbia River under scenarios of ship traffic and channel depth: Report prepared for the Portland District U.S. Army Corps of Engineers, Portland, Oregon). The U.S. Army Corps of Engineers funded the U.S. Geological Survey to review this model. A total of 30 review questions were provided to guide the review process, and these questions are addressed in this report. In general, we determined that the analyses by Pearson (2011) were appropriate given the data available. We did identify two areas where additional information could have been provided: (1) a more thorough description of model diagnostics and model selection would have been useful for the reader to better understand the model framework; and (2) model uncertainty should have been explicitly described and reported in the document. Stranding probability estimates between the 40- and 43-ft channel depths were minimally different under most of the scenarios that were examined by Pearson (2011), and a discussion of the effects of uncertainty given these minimal differences would have been useful. Ultimately, however, a stochastic (or simulation) model would provide the best opportunity to illustrate uncertainty within a given set of model predictions, but such an approach would require a substantial amount of additional data collection. Several review questions focused on the accuracy and precision of the model estimates, but we were unable to address these questions because of the limited data that currently exists regarding wake stranding in the LCR. Additional field studies will be required to validate findings from Pearson (2011), if concerns regarding accuracy and precision remain a priority. Although the Pearson (2011) model provided a useful examination of stranding under pre-construction and post-construction conditions, future research will be required to better understand the effects of wake stranding on juvenile salmonids throughout the entire LCR. If additional information on wake stranding is desired in the future, the following topics may be of interest: (1) spatial examination of wake stranding throughout the entire LCR; (2) additional evaluation of juvenile salmonid behavior and population dynamics; (3) assessing and integrating predicted changes in ship development; and (4) assessing and integrating predicted changes in climate on environmental factors known to cause stranding.

Oregon;Washington

In memoriam - William Toshio (Tosh) Yasutake, 1922-2016

William Toshio (Tosh) Yasutake, 1922-2016 passed away peacefully at home on December 12, 2016, at the age of 94. He is survived by Fumi, his wife of 66 years, as well as four children and six grandchildren. With his death, the fish health community has lost an outstanding scientist as well as a kind, unassuming, and wonderful human being. Tosh was born on June 10, 1922, in Seattle, Washington, to Jack and Hide Yasutake. He was in his first year of studies at the University of Washington when Pearl Harbor was attacked by Imperial Japan on December 7, 1941. Following the attack, Tosh and his family (father, mother, sister, and two brothers) were among the 110,000–120,000 people of Japanese ancestry who were forced from their homes on the Pacific coast and incarcerated in internment camps in the interior. In June 1942, Tosh enlisted in the U.S. Army, serving as an unarmed combat medic in the famed 442nd Regimental Combat Team, the most decorated unit for its size and length of service in the history of American warfare. Wounded in October 1944 during the Vosges Mountains campaign near Bruyères, France, Tosh was evacuated and missed the ensuing battle to rescue the “Lost Battalion,” at which his replacement was killed. Tosh returned to action in Italy in February 1945 and served until the end of the war in Europe, earning both a Purple Heart and a Bronze Star for bravery. In October 2010, the Congressional Gold Medal was awarded to the 442nd Regimental Combat Team, and in 2012 the surviving members were made chevaliers of the French Légion d’Honneur for actions contributing to the liberation of France in World War II. After the war, Tosh returned to the University of Washington on the GI Bill and received a B.S. degree in zoology in 1951. In 1953 he began his research career at the U.S. Fish and Wildlife Service’s Western Fish Nutrition Laboratory at Cook, Washington, where he conducted pioneering research on nutritional fish diseases with John Halver. Tosh was one of the first to recognize hepatomas in hatchery-reared Rainbow Trout and helped to trace the disease to an aflatoxin produced by the mold Aspergillus flavis , which grew during the storage of ingredients for fish diets. In 1960, he transferred to the Western Fisheries Research Center (WFRC) in Seattle (then called the Western Fish Disease Laboratory) to start a fish pathology diagnostic laboratory. There he described the histopathology of diseases of economically important fishes, identified etiologic agents, and worked with hatchery biologists to improve the health, quality, and survival of salmonids released from federal and state hatcheries. Tosh was instrumental in recognizing that the viruses of Oregon sockeye disease and Chinook Salmon virus disease were one entity and in giving the disease its present name: infectious hematopoietic necrosis. In recognition of his pioneering research, Tosh was awarded a doctorate in fish pathology by the University of Tokyo in 1980, the first American to have been so honored. In 1983, he published his classic textbook The Microscopic Anatomy of Salmonids: An Atlas , which quickly became a standard reference work in fish pathology and is still in wide use today. For his outstanding career achievements, in 1987 Tosh received the S. F. Snieszko Distinguished Service Award, the highest honor bestowed by the American Fisheries Society’s Fish Health Section (AFS–FHS). Tosh retired in 1988 but continued his research at the WFRC as a senior scientist emeritus, providing technical assistance to federal and state agencies and to the aquaculture industry worldwide. His culminating project was to digitize his lifetime collection of photomicrographs and prepare an atlas, “Histopathology of Selected Parasitic Salmonid Diseases: A Color Atlas,” that is now posted on the Web sites of the WFRC and the AFS–FHS. Although his presence will be sorely missed, his research contributions have become part of the foundation of today’s knowledge of fisheries biology and have assured him a place in history.

Journal of Aquatic Animal Health

The story of the Hawaiian Volcano Observatory -- A remarkable first 100 years of tracking eruptions and earthquakes

The year 2012 marks the centennial of the Hawaiian Volcano Observatory (HVO). With the support and cooperation of visionaries, financiers, scientists, and other individuals and organizations, HVO has successfully achieved 100 years of continuous monitoring of Hawaiian volcanoes. As we celebrate this milestone anniversary, we express our sincere mahalo—thanks—to the people who have contributed to and participated in HVO’s mission during this past century. First and foremost, we owe a debt of gratitude to the late Thomas A. Jaggar, Jr., the geologist whose vision and efforts led to the founding of HVO. We also acknowledge the pioneering contributions of the late Frank A. Perret, who began the continuous monitoring of Kīlauea in 1911, setting the stage for Jaggar, who took over the work in 1912. Initial support for HVO was provided by the Massachusetts Institute of Technology (MIT) and the Carnegie Geophysical Laboratory, which financed the initial cache of volcano monitoring instruments and Perret’s work in 1911. The Hawaiian Volcano Research Association, a group of Honolulu businessmen organized by Lorrin A. Thurston, also provided essential funding for HVO’s daily operations starting in mid-1912 and continuing for several decades. Since HVO’s beginning, the University of Hawaiʻi (UH), called the College of Hawaii until 1920, has been an advocate of HVO’s scientific studies. We have benefited from collaborations with UH scientists at both the Hilo and Mänoa campuses and look forward to future cooperative efforts to better understand how Hawaiian volcanoes work. The U.S. Geological Survey (USGS) has operated HVO continuously since 1947. Before then, HVO was under the administration of various Federal agencies—the U.S. Weather Bureau, at the time part of the Department of Agriculture, from 1919 to 1924; the USGS, which first managed HVO from 1924 to 1935; and the National Park Service from 1935 to 1947. For 76 of its first 100 years, HVO has been part of the USGS, the Nation’s premier Earth science agency. It currently operates under the direction of the USGS Volcano Science Center, which now supports five volcano observatories covering six U.S. areas—Hawaiʻi (HVO), Alaska and the Northern Mariana Islands (Alaska Volcano Observatory), Washington and Oregon (Cascades Volcano Observatory), California (California Volcano Observatory), and the Yellowstone region (Yellowstone Volcano Observatory). Although the National Park Service (NPS) managed HVO for only 12 years, HVO has enjoyed a close working relationship with Hawaiʻi Volcanoes National Park (named Hawaii National Park until 1961) since the park’s founding in 1916. Today, as in past years, the USGS and NPS work together to ensure the safety and education of park visitors. We are grateful to all park employees, particularly Superintendent Cindy Orlando and Chief Ranger Talmadge Magno and their predecessors, for their continuing support of HVO’s mission. HVO also works closely with the Hawaiʻi County Civil Defense. During volcanic and earthquake crises, we have appreciated the support of civil defense staff, especially that of Harry Kim and Quince Mento, who administered the agency during highly stressful episodes of Kīlauea's ongoing eruption. Our work in remote areas on Hawaiʻi’s active volcanoes is possible only with the able assistance of Hawaiʻi County and private pilots who have safely flown HVO staff to eruption sites through the decades. A special mahalo goes to David Okita, who has been HVO’s principal helicopter pilot for more than two decades. Many commercial and Civil Air Patrol pilots have also assisted HVO by reporting their observations during various eruptive events. Hawaiʻi’s news media—print, television, radio, and online sources—do an excellent job of distributing volcano and earthquake information to the public. Their assistance is invaluable to HVO, especially during times of crisis. HVO’s efforts to provide timely and accurate scientific information about Hawaiian volcanoes and earthquakes succeed only because of you, our receptive and keenly aware public. By following the activity of Hawaiʻi’s active volcanoes through our daily eruption updates posted on the HVO website, viewing HVO webcam images, reading our weekly “Volcano Watch” articles, and attending our public lectures, you help us to ensure that you can live safely with Hawaiʻi’s dynamic volcanoes. To everyone who has shared in HVO’s reaching this milestone—100 years of continuous volcano monitoring—we extend our deepest gratitude. Mahalo nui loa!

Hawai'i

Late Mesozoic and possible early Tertiary accretion in western Washington State: The Helena-Haystack mélange and the Darrington-Devils Mountain fault zone

The Helena-Haystack mélange (HH mélange) and coincident Darrington-Devils Mountain fault zone (DDMFZ) in northwestern Washington separate two terranes, the Northwest Cascade System (NWCS) and the western and eastern mélange belts (WEMB). The two terranes of Paleozoic and Mesozoic rocks superficially resemble each other but record considerable differences in structural and metamorphic history. The HH mélange is a serpentinite-matrix mélange containing blocks of adjacent terranes but also exotic blocks of schistose metavolcanic rocks and Jurassic tonalite and associated amphibolite. The HH mélange must have formed between early Cretaceous and late middle Eocene time, because it contains tectonic clasts of early Cretaceous Shuksan Greenschist and is overlain by late middle Eocene sedimentary and volcanic rocks. Less certain constraints on its age are a tectonic clast of metarhyolite that yields 90 Ma metamorphic ages and the presumption that the mélange was emplaced before the outboard Olympic terrane arrived at about 50 Ma. The apparent continuity of the HH mélange and the Decatur terrane of the San Juan Islands suggests that the mélange is the strongly tectonized equivalent of the Fidalgo ophiolite. The out-crop pattern suggests that the HH mélange overlies rocks of the NWCS and it may have formed when the WEMB terranes were thrust over rocks of the NWCS. Much of the exposed belt of the HH mélange is overlain by late middle Eocene feldspathic sandstone and volcanic rocks of the Barlow Pass Volcanics of Vance (1957a), which are cut by numerous faults of the DDMFZ paralleling the mélange. The Barlow Pass Volcanics appear to overlie the Straight Creek fault without large offset, but a displaced exotic block of amphibolite with attached early or early middle Eocene(?) sandstone in the mélange suggests that strike-slip movement along the DDMFZ was synchronous with movement on the Straight Creek fault, and stretched cobbles in the conglomerates of the Barlow Pass Volcanics suggest post-Straight Creek movement. The possible continuation of the DDMFZ to the northwest as the San Juan and the West Coast faults on Vancouver Island suggests That the structure has had a major role in the emplacement of all the westernmost terranes in the Pacific Northwest. This major suture is strongly bowed to the northeast opposite the great oroclinal bend of the Olympic terrane, suggesting that the emplacement of that terrane may have deformed a once straighter strike-slip zone.

Washington

Conceptual Model and Numerical Simulation of the Ground-Water-Flow System in the Unconsolidated Sediments of Thurston County, Washington

The demand for water in Thurston County has increased steadily in recent years because of a rapid growth in population. Surface-water resources in the county have been fully appropriated for many years and Thurston County now relies entirely on ground water for new supplies of water. Thurston County is underlain by up to 2,000 feet of unconsolidated glacial and non-glacial Quaternary sediments which overlie consolidated rocks of Tertiary age. Six geohydrologic units have been identified within the unconsolidated sediments. Between 1988 and 1990, median water levels rose 0.6 to 1.9 feet in all geohydrologic units except bedrock, in which they declined 1.4 feet. Greater wet-season precipitation in 1990 (43 inches) than in 1988 (26 inches) was the probable cause of the higher 1990 water levels. Ground-water flow in the unconsolidated sediments underlying Thurston County was simulated with a computerized numerical model (MODFLOW). The model was constructed to simulate 1988 ground-water conditions as steady state. Simulated inflow to the model area from precipitation and secondary recharge was 620,000 acre-feet per year (93 percent), leakage from streams and lakes was 38,000 acre-ft/yr (6 percent), and ground water entering the model along the Chehalis River valley was 5,800 acre-ft/yr (1 percent). Simulated outflow from the model was primarily leakage to streams, springs, lakes, and seepage faces (500,000 acre-ft/yr or 75 percent of the total outflow). Submarine seepage to Puget Sound was simulated to be 88,000 acre-ft/yr (13 percent). Simulated ground-water discharge along the Chehalis River valley was simulated to be 12,000 acreft/yr (2 percent). Simulated withdrawals by wells for all purposes was 62,000 acre-ft/yr (9 percent). The numerical model was used to simulate the possible effects of increasing ground-water withdrawals by 23,000 acre-ft/yr above the 1988 rate of withdrawal. The model indicated that the increased withdrawals would come from reduced discharge to springs, seepage faces, and offshore (total of 51 percent of increased pumping) and decreased flow to rivers (46 percent). About 3 percent would come from increased leakage from rivers. Water levels would decline more than 1 foot over most of the model area, more than 10 feet over some areas, and would be at a maximum of about 35 feet. Contributing areas for water discharging at McAllister and Abbott Springs and to pumping centers near Tumwater and Lacey were estimated using a particle-tracking post-processing computer code (MODPATH) and a MODFLOW model calibrated to steady-state (1988) conditions. Water discharging at McAllister and Abbot Springs was determined to come from water entering the ground-water system at the water table in an area of about 20 square miles (mi2) to the west and south of the springs. This water is estimated to come from recharge (both precipitation and secondary) and from leakage from Lake St. Clair and several other surface-water bodies. Southeast of Lacey, about 3,800 acre-ft of ground water were pumped from five municipal wells during 1988. The source of the pumped water was determined to be an area that covers about 1.1 mi2. The water was estimated to come from recharge (both precipitation and secondary) and leakage from surface-water bodies. Along the lower Deschutes River nearly 3,900 acre-ft/yr of ground water were pumped during 1988 from 15 wells for municipal and industrial use. The calculated source of this water was an area that covers about 1.3 mi2. Within the calculated contributing area the pumped ground water comes from recharge (both precipitation and secondary) and leakage from the Deschutes River and several other surface-water bodies.

Water-Resources Investigations Report

Recurrent geothermally induced debris avalanches on Boulder Glacier, Mount Baker, Washington

Avalanches of snow, firn and hydrothermally altered rock and mud have been released six times since 1958 from Sherman Peak, part of the crater rim south of the main summit of Mount Baker, Wash. The avalanches traveled nearly identical paths 2.0-2.6 km down Boulder Glacier on the east slope of the volcano. Debris from at least one past avalanche can be seen as a thin bed of acidic mud in the glacier terminus. Fumaroles. thermal springs, and areas of warm ground, some of which are subglacial, are concentrated in the crater and were mapped by aerial infrared thermography. The outgoing radiant flux per unit area from a cluster of infrared anomalies within 50-150 m of the avalanche source was estimated to be 319 W m -2 (7,620 μ cal cm -2 s -1 ) in November 1972, which is sufficient to account for observed ice perforations. In addition vapor emission, not apparent in thermography, was observed along the source margin after the avalanche of August 1973. The principal conditions that produce the avalanches are considered to be the large accumulation of snow and firn on top of hydrothermally altered clay-rich ground at Sherman Peak and the saturation near the ground-firn interface by melt water produced both by summer snow ablation and by geothermal emission. The periodic avalanches have a potential for impounding water in the crater in addition to ponded water already known to occur. Sudden release of impounded water could present a danger to the Boulder Creek valley below.

Washington

Groundwater status and trends for the Columbia Plateau Regional Aquifer System, Washington, Oregon, and Idaho

Well information and groundwater-level measurements for the Columbia Plateau Regional Aquifer System in Washington, Oregon, and Idaho, were compiled from data provided by the U.S. Geological Survey and seven other organizations. From the full set of about 60,000 wells and 450,000 water-level measurements a subset of 761 wells within the aquifers of the Columbia River Basalt Group (CRBG) then was used to develop a simple linear groundwater-level trend map for 1968–2009. The mean of the trends was a decline of 1.9 feet per year (ft/yr), with 72 percent of the water levels in wells declining. Rates of declines greater than 1.0 ft/yr were measured in 50 percent of wells, declines greater than 2.0 ft/yr in 38 percent of wells, declines greater than 4.0 ft/yr in 29 percent of wells, and declines greater than 8.0 ft/yr in 4 percent of wells. Water-level data were used to identify groups of wells with similar hydraulic heads and temporal trends to delineate areas of overall similar groundwater conditions. Discontinuities in hydraulic head between well groups were used to help infer the presence of barriers to groundwater flow such as changes in lithology or the occurrence of folds and faults. In areas without flow barriers, dissimilarities in response of well groups over time resulted from the formation of groundwater mounds caused by recharge from irrigation or regions of decline caused by pumping. The areas of focus for this analysis included the Umatilla area, Oregon, and the Palouse Slope/eastern Yakima Fold Belt in the Columbia Basin Ground Water Management Area (GWMA) consisting of Adams, Franklin, Grant, and Lincoln Counties, Washington. In the Umatilla area, water levels from 286 wells were used to identify multiple areas of high hydraulic gradient that indicate vertical and horizontal barriers to groundwater flow. These barriers divide the groundwater-flow system into several compartments with varying degrees of interconnection. Horizontal flow barriers commonly correspond to mapped geologic structure and result in horizontal hydraulic gradients that progressively become steeper from north to south corresponding to an increase in structural complexity that may be impeding recharge from the uplands into the heavily developed areas. Most CRBG aquifers in the Umatilla area are declining and since 1970, cumulative declines range from about 100 to 300 feet. Significant vertical hydraulic gradients are documented for relatively small areas near Umatilla, and since the 1970s, downward vertical gradients in these areas have been increasing as hydraulic heads in the deeper units have declined. The absence of vertical gradients over much of the area may be a consequence of flow through commingling wells that results in the equilibration of the heads between aquifers. On the Palouse Slope in the central GWMA, large groundwater declines occurred during 1968–2009 along a north-south swath in the middle of the region. An analysis of 1,195 wells along major flow paths and through the area of persistent groundwater-level declines indicates that barriers to flow are not as evident in this area as in Umatilla. This is consistent with the geologic interpretation of the Palouse Slope as being a gently folded structure created by voluminous sheet flows of CRBG lavas. Groundwater discharge into the sediment-filled coulees, where the upper aquifers are intersected at land surface by incised canyons, is proposed as an alternative to explain local steepening of the hydraulic gradient along the Palouse Slope previously attributed to the presence of a groundwater dam. Comparison of generalized potentiometric surface maps developed for pre-development conditions and post-2000 conditions indicate that pre-development groundwater flow was from the uplands toward the Columbia and Snake River and that post-2000 flow patterns in the area are controlled by irrigation practices that have resulted in broad regions of elevated or depressed hydraulic head. In some cases, irrigation-related changes in head have reversed groundwater flow directions. Evidence of significant vertical hydraulic gradients exists, although much of the aquifer thickness is affected by commingling of wells. The effect of commingling and its relative contribution to problems related to groundwater-level declines remains unclear.

Washington, Oregon, Idaho

Geomorphic map of western Whatcom County, Washington

Western Whatcom County has a rich history of glaciation, sea-level change, fluvial erosion and deposition, landsliding, nearby volcanic activity, and human landscape modification. This lidar-derived geomorphic map interprets this history from the form and position of the Earth’s surface. The geomorphic record is broken into nine phases, beginning with the peak of the Vashon stade of the Fraser glaciation of Armstrong and others (1965) (phase 1), shortly after 16,000 years ago. The Cordilleran ice sheet was ≥1.6 km thick in the Bellingham area. Glacial lineations on high ground demonstrate that ice flow was from north to south. Storage of water in ice sheets at this time resulted in global sea level ~120 m lower than at present. The weight of the ice sheet depressed the land so that local relative sea level was at least 150 m higher than at present. As the ice sheet melted and thinned, it floated, broke up, and was replaced by salt water. The margin of the ice sheet—or at least its grounding line—retreated to the northeast of the map area during or before phase 2. Marine deposition, currents, and waves smoothed earlier-formed surfaces in the western part of the map area. Global sea level rose (because of melting of continental ice sheets), but the Fraser Lowland rose even faster (due to glacio-isostatic rebound following the loss of ice-sheet load), and thus local relative sea level fell. The Cordilleran ice sheet readvanced during the Sumas stade of Armstrong and others (1965). Oldest Sumas moraines formed when relative sea level at Bellingham was ~55 m (phase 3). Younger moraines formed when relative sea level at Bellingham was ~25 m (phase 4). The amount of Sumas ice retreat and readvance between these times is unknown. Younger Sumas events are marked by local moraines, progressive isostatic rebound and lowering of relative sea level, and changes in the flow of ice-marginal water. During phase 5, the southeast margin of the ice sheet advanced, perhaps because capture of ice-marginal drainage by the Samish River (east and south of the map area) meant the ice sheet was no longer trimmed by high-discharge flow along Squalicum channel. Farther west and north, the ice margin retreated between phases 4 and 5. Phases 6 through 9 may mark stillstands during further ice retreat. There were glacial outburst floods (jökulhlaups) during phases 7 and 8, and perhaps during phase 5. When Sumas ice left the area, perhaps about 11,500 years ago, the Nooksack River appears to have discharged northeast through Sumas Valley to the Fraser River. Details of the switch to its modern course are speculative, but archaeological and sediment-supply arguments suggest that the modern Nooksack River delta south of Ferndale formed within the past 5,000 years. The foothills of the North Cascades are decorated with abundant post-glacial deep-seated landslides. Anomalously high late Holocene beaches are found at Birch Bay, Neptune Beach, perhaps at Maple Beach on the east side of Point Roberts, and perhaps at the northwest corner of the Lummi Peninsula. These beaches may have been uplifted by earthquakes that did not rupture the surface. The low-relief landscape shaped by the Cordilleran ice sheet, along with fluvial infilling of low areas, resulted in abundant wetland, at least 70 percent of which has been diked and (or) drained to control flooding and facilitate farming.

Washington

Flood-inundation maps for Lake Champlain in Vermont and New York

In 2016, digital flood-inundation maps along the shoreline of Lake Champlain in Addison, Chittenden, Franklin, and Grand Isle Counties in Vermont and northern Clinton County in New York were created by the U.S. Geological Survey (USGS) in cooperation with the International Joint Commission (IJC). This report discusses the creation of updated static digital flood-inundation mapping, in 2018, to include the entire shoreline of Lake Champlain in the United States. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science website at http://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent of flooding corresponding to selected water-surface elevations (stages) at the USGS lake gages on Lake Champlain. As a result of the record setting floods of May 2011 in Lake Champlain and the Richelieu River, the U.S. and Canadian governments requested that the IJC issue a reference for a study to identify how flood forecasting, preparedness, and mitigation could be improved in the Lake Champlain–Richelieu River Basin. The IJC submitted the Lake Champlain–Richelieu River Plan of Study to the governments of Canada and the United States in 2013. The flood-inundation maps in this study are one aspect of the task work outlined in the IJC 2013 Plan of Study. Wind and seiche effects (standing oscillating wave with a long wavelength) that can influence flooding along the Lake Champlain shoreline were not represented. The flood-inundation maps reflect 11 stages for Lake Champlain that are static for the entire area of the lake. Near-real-time stages at the USGS gages on Lake Champlain may be obtained from the USGS National Water Information System website at http://waterdata.usgs.gov/ ( https://doi.org/10.5066/F7P55KJN ) or from the National Weather Service Advanced Hydrologic Prediction Service at http://water.weather.gov/ahps/ . Updated static flood-inundation boundary extents were created for Lake Champlain in Franklin, Chittenden, Addison, Rutland, and Grand Isle Counties in Vermont and Clinton, Essex, and Washington Counties in New York by using recently acquired (2009, 2012, 2014, and 2015) light detection and ranging (lidar) data. The corresponding flood-inundation maps may be referenced to any of the four active USGS lake gages on Lake Champlain. Of these four active lake gages, USGS lake gage 04295000, Richelieu River (Lake Champlain) at Rouses Point, N.Y.; USGS lake gage 04294500, Lake Champlain at Burlington, Vt.; USGS lake gage 04279085 Lake Champlain north of Whitehall, N.Y.; and USGS lake gage 04294413, Lake Champlain at Port Henry, N.Y., only the Richelieu River (Lake Champlain) at Rouses Point, N.Y., gage also serves as a National Weather Service prediction location. Lake Champlain static flood-inundation map boundary extents corresponding to the May 2011 peak flood stage (103.20 feet [ft], National Geodetic Vertical Datum of 1929 [NGVD 29], as recorded at the USGS Rouses Point lake gage, were compared to the flood-inundation area extents determined from satellite imagery for the May 2011 flood (which incorporated documented high-water marks from the flood of May 2011) and were found to be in good agreement. The May 2011 flood is the highest recorded lake water level (stage) at the Rouses Point, N.Y., and Burlington, Vt., lake gages. Flood stages greater than 101.5 ft (NGVD 29) exceed the “major flood stage” as defined by the National Weather Service for USGS lake gage 04295000. Updated digital elevation models (DEMs) were created from the recent lidar data for Lake Champlain in Vermont and New York. These DEMs were used in determining the flood-inundation boundary and associated depth grids for 11 flood stages at 0.5-ft or 1-ft intervals from 100.0 to 106.0 ft (NGVD 29) as referenced to the USGS lake gages. In addition, the May 2011 flood-inundation area for elevation 103.20 ft (NGVD 29) (102.77 ft, North American Vertical Datum of 1988) was determined from these updated DEMs. The availability of these maps, along with online information regarding current stages at the USGS lake gages and forecasted high-flow stages from the National Weather Service at USGS lake gage 04295000, Richelieu River (Lake Champlain) at Rouses Point, N.Y., will provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

New York, Vermont

Juvenile salmonid monitoring following removal of Condit Dam in the White Salmon River Watershed, Washington, 2017

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011, and removed completely in 2012, providing anadromous salmonids with the opportunity to recolonize habitat blocked for nearly 100 years. Prior to dam removal, a multi-agency workgroup concluded that the preferred salmonid restoration alternative was to allow natural recolonization. Monitoring would assess fish recolonization efficacy, followed by management evaluation 5 years after dam removal. Limited monitoring of salmon and steelhead recolonization has occurred since 2011. The U.S. Geological Survey began juvenile salmonid monitoring in 2016 and did a second year during 2017, with sampling efforts like those of 2016. River conditions differed between the 2 years, both during (that is, high flows in 2017) and prior to (that is, 2015 summer drought conditions and December 2015 White Salmon River flood event) sampling. We operated a rotary screw trap at river kilometer 2.3 (3 kilometers downstream of the former dam site) from early April through early June to assess species diversity, and production of smolt and other migrant life stages. We also used backpack electrofishing during summer to assess juvenile salmonid distribution and abundance. Both sampling methods provided the opportunity to collect genetic samples (analysis of samples was not covered under funding received from the Mid-Columbia Fisheries Enhancement Group for the 2017 monitoring efforts) and to tag fish with passive integrated transponder (PIT) tags, which will provide life-history data through future recaptures and detections. The screw trap captured steelhead (anadromous rainbow trout, Oncorhynchus mykiss ), fry, parr, and smolts; coho salmon ( O. kisutch ) fry, parr, and smolts; and Chinook salmon ( O. tshwaytscha ) fry, parr, and one smolt. Prolonged high water and some missed trapping periods during 2017 prevented us from generating smolt estimates. Despite difficult trapping conditions, the number of coho salmon fry and parr, and steelhead fry and parr captured in 2017 exceeded those captured during 2016. The number of age-0 Chinook salmon captured in the screw trap during 2017 was much higher ( n = 222) than in 2016 ( n = 4). Electrofishing in tributaries provided information on distribution and abundance of juvenile coho salmon and O. mykiss . Juvenile coho salmon were again found in Mill and Buck Creeks and, for the first time, in Rattlesnake Creek (all three creeks are upstream of the former dam site). In both Rattlesnake and Buck Creeks, age-0 O. mykiss abundance decreased between 2016 and 2017; however, age-1 and older O. mykiss and age-0 coho salmon abundance increased between years at both sites. Data on O. mykiss abundance at sites in Buck and Rattlesnake Creeks is providing the opportunity to begin to understand trends and variability post-dam removal and to compare to pre-dam removal periods. Mean age-0 O. mykiss abundance (fish per meter [fish/m]) at the Rattlesnake Creek site has been slightly lower during post-dam removal (mean = 3.0, n = 2, range = 2.4–3.6) than pre-dam removal (mean = 3.4, n = 5, range = 1.5–5.1). However, the presence of juvenile coho salmon in Rattlesnake Creek during 2017 (0.5 fish/m) brought total age-0 salmonid abundance in 2017 to 2.9 fish/m. Mean age-1 or older O. mykiss abundance (fish/m) at the Rattlesnake Creek site has been lower post-dam removal (mean = 0.2, n = 2, range = 0.1–0.3) than pre-dam removal (mean = 0.5, n = 2, range = 0.3–0.8). Mean age-0 O. mykiss abundance (fish/m) at the Buck Creek site has been higher post-dam removal (mean = 2.1, n = 2, range = 1.2–3.0) than pre-dam removal (mean = 1.8, n = 2, range = 1.6–1.9). The addition of age-0 coho salmon to Buck Creek brings mean age-0 salmonid abundance post-dam removal to 2.7 fish/m (range = 1.9–3.4). Mean age-1 or older O. mykiss abundance (fish/m) in Buck Creek has been slightly higher post-dam removal (mean = 0.8, n = 2, range = 0.6–1.1) than pre-dam removal (mean = 0.6, n = 2, both years 0.6).

Washington

Pocomoke Sound Sedimentary and Ecosystem History

Summary of Results: Pocomoke Sound Sediment and Sediment Processes Transport of sediment from coastal marshes. Analyses of pollen and foraminifera from surface sediments in Pocomoke Sound suggest that neither the upstream forested wetlands nor coastal marshes bordering the sound have contributed appreciably to particulate matter in the 10- to 1000-micron size range that is currently being deposited in the sound. Sediment processes derived from short-lived isotope. Analyses of beryllium-7, cesium-137 and lead-210 and redox sensitive elements from Pocomoke sediments showed that there has been a significant increase in anthropogenic elements since the late 1940's when the Delmarva Peninsula became more accessible from the Baltimore-Washington region. Cesium-137 was found to be a useful tool to determine changes in sedimentation within the system. Three major stages of sedimentation occurred. Before 1950, the system was equilibrium with the agriculture activity in the watershed, whereas urbanization and agricultural activity changes during and immediately preceding World War II resulted in increased sediment flux. Around 1970, the sediment flux diminished and there was an apparent increase in bank erosion sediment to the deeper parts of the system. Rates of sediment deposition. Radiocarbon, lead-210, and pollen dating of sediment cores from Pocomoke Sound indicate relatively continuous deposition of fine-grained sediments in the main Pocomoke channel at > ~7 m water depths. Mean sediment accumulation rates during the past few centuries were relatively high (>1 cm yr -1 ). The ages of coarser-grained sediments (sands) blanketing the shallow (< ~ 7 m water depth) flanks of Pocomoke Sound are not well constrained but were probably deposited discontinuously. Impacts of land-use on benthic biota. The Pocomoke Sound paleoecological record shows that in the 1940-50s and again in the 1970-80s, the sound experienced unprecedented changes in the benthic assemblages of both ostracodes and foraminifera that can be attributed to degradation in water quality. These changes represent perturbations to the natural variability in faunal assemblages, which are normally driven by climatically influenced changes in salinity regimes. Changes in 20th century benthic communities were characterized by the rise to dominance of facultative anaerobic taxa tolerant of hypoxia and detrital-feeding species, reflecting increased influx of organic matter, and perhaps greater turbidity. Results support the hypothesis of Orth et al. (2002) and Orth and Moore (1983) that unprecedented changes to the bay ecosystem affected submerged aquatic vegetation in the Tangiers-Pocomoke region prior to large-scale monitoring began in the 1970s and 80s. Comparison of Pocomoke paleoecological record with those from the mainstem bay indicate that environmental degradation during the 20th century was nearly synchronous bay-wide within the limits of sediment core chronology (10-20 years). Stable isotopic evidence for decadal water quality changes. Stable isotopic records from benthic foraminifera in Pocomoke Sound sediment cores, especially oxygen isotopes, document regional decadal and centennial climate processes which influence salinity and water quality over the past few centuries. These results provide indirect evidence for discharge-driven changes in freshwater and presumably river-borne sediment from the watershed to the sound. They are consistent with studies in the mainstem indicating the important influence of climatic and hydrological processes on water quality. Pollen evidence for high sedimentation and vegetation change during colonial land clearance. Pollen assemblages from sediment cores in Pocomoke Sound document high sedimentation rates (0.7->4.0 cm yr -1 ) at most sites throughout the Sound in post-Colonial time. These results confirm those from other regions of the bay that land-clearance increased the flux of river-borne sediment to certain r

Open-File Report

Assessment and management of dead-wood habitat

The Bureau of Land Management (BLM) is in the process of revising its resource management plans for six districts in western and southern Oregon as the result of the settlement of a lawsuit brought by the American Forest Resource Council. A range of management alternatives is being considered and evaluated including at least one that will minimize reserves on O&C lands. In order to develop the bases for evaluating management alternatives, the agency needs to derive a reasonable range of objectives for key issues and resources. Dead-wood habitat for wildlife has been identified as a key resource for which decision-making tools and techniques need to be refined and clarified. Under the Northwest Forest Plan, reserves were to play an important role in providing habitat for species associated with dead wood (U.S. Department of Agriculture Forest Service and U.S. Department of the Interior Bureau of Land Management, 1994). Thus, the BLM needs to: 1) address the question of how dead wood will be provided if reserves are not included as a management strategy in the revised Resource Management Plan, and 2) be able to evaluate the effects of alternative land management approaches. Dead wood has become an increasingly important conservation issue in managed forests, as awareness of its function in providing wildlife habitat and in basic ecological processes has dramatically increased over the last several decades (Laudenslayer et al., 2002). A major concern of forest managers is providing dead wood habitat for terrestrial wildlife. Wildlife in Pacific Northwest forests have evolved with disturbances that create large amounts of dead wood; so, it is not surprising that many species are closely associated with standing (snags) or down, dead wood. In general, the occurrence or abundance of one-quarter to one-third of forest-dwelling vertebrate wildlife species, is strongly associated with availability of suitable dead-wood habitat (Bunnell et al., 1999; Rose et al., 2001). In Oregon and Washington, approximately 150 species of wildlife are reported to use dead wood in forests (O’Neil et al., 2001). Forty-seven sensitive and special-status species are associated with dead wood (Appendix A). These are key species for management consideration because concern over small or declining populations is often related to loss of suitable dead-wood habitat (Marshall et al., 1996). Primary excavators (woodpeckers) also are often the focus of dead-wood management, because they perform keystone functions in forest ecosystems by creating cavities for secondary cavity-nesters (Martin and Eadie, 1999; Aubry and Raley, 2002). A diverse guild of secondary cavity-users (including swallows, bluebirds, several species of ducks and owls, ash-throated flycatcher, flying squirrel, bats, and many other species) is unable to excavate dead wood, and therefore relies on cavities created by woodpeckers for nesting sites. Suitable nest cavities are essential for reproduction, and their availability limits population size (Newton, 1994). Thus, populations of secondary cavity-nesters are tightly linked to the habitat requirements of primary excavators. Although managers often focus on decaying wood as habitat for wildlife, the integral role dead wood plays in ecological processes is an equally important consideration for management. Rose et al. (2001) provide a thorough review of the ecological functions of dead wood in Pacific Northwest forests, briefly summarized here. Decaying wood functions in: soil development and productivity, nutrient cycling, nitrogen fixation, and carbon storage. From ridge tops, to headwater streams, to estuaries and coastal marine ecosystems, decaying wood is fundamental to diverse terrestrial and aquatic food webs. Wildlife species that use dead wood for cover or feeding are linked to these ecosystem processes through a broad array of functional roles, including facilitation of decay and trophic interactions with other organisms (Marcot, 2002; Marcot, 2003). For example, by puncturing bark and fragmenting sapwood, woodpeckers create sites favorable for wood-decaying organisms (Farris et al., 2004), which in turn create habitat for other species and facilitate nutrient cycling. Small mammals that use down wood for cover function in the dispersal of plant seeds and fungal spores (Carey et al., 1999). Resident cavitynesting birds may regulate insect populations by preying on overwintering arthropods (Jackson, 1979; Kroll and Fleet, 1979). These examples illustrate how dead wood not only directly provides habitat for a large number of wildlife species, but also forms the foundation of functional webs that critically influence forest ecosystems (Marcot, 2002; Marcot, 2003). The important and far-reaching implications of management of decaying wood highlight the need for conservation of dead-wood resources in managed forests. Consideration of the key ecological functions of species associated with dead wood can help guide management of dead wood in a framework consistent with the paradigm of ecosystem management (Marcot and Vander Heyden, 2001; Marcot, 2002.) As more information is revealed about the ecological and habitat values of decaying wood, concern has increased over a reduction in the current amounts of dead wood relative to historic levels (Ohmann and Waddell, 2002). Past management practices have tended to severely reduce amounts of dead wood throughout all stages of forest development (Hansen et al., 1991). The large amounts of legacy wood that characterize young post-disturbance forests are not realized in managed stands, because most of the wood volume is removed at harvest for economic and safety reasons. Mid-rotation thinning is used to “salvage” some mortality that might otherwise occur due to suppression, so fewer snags are recruited in mid-seral stages. Harvest rotations of 80 years or less truncate tree size in managed stands, and thus limit the production of large-diameter wood. As a consequence of these practices, dead wood has been reduced by as much as 90% after two rotations of managed Douglas-fir (Rose et al., 2001). Large legacy deadwood is becoming a scarce, critical habitat that will take decades to centuries to replace. Furthermore, management continues to have important direct and indirect effects on the amount and distribution of dead wood in forests. Current guidelines for managing dead wood may be inadequate to maintain habitat for all associated species because they largely focus on a single use of dead wood (nesting habitat) by a small suite of species (cavity-nesting birds), and may under represent the sizes and amounts of dead wood used by many wildlife species (Rose et al., 2001, Wilhere, 2003).

Open-File Report

Annual trace-metal load estimates and flow-weighted concentrations of cadmium, lead, and zinc, in the Spokane River basin, Idaho and Washington, 1999-2004

Streamflow and trace-metal concentration data collected at 10 locations in the Spokane River basin of northern Idaho and eastern Washington during 1999-2004 were used as input for the U.S. Geological Survey software, LOADEST, to estimate annual loads and mean flow-weighted concentrations of total and dissolved cadmium, lead, and zinc. Cadmium composed less than 1 percent of the total metal load at all stations; lead constituted from 6 to 42 percent of the total load at stations upstream from Coeur d’Alene Lake and from 2 to 4 percent at stations downstream of the lake. Zinc composed more than 90 percent of the total metal load at 6 of the 10 stations examined in this study. Trace-metal loads were lowest at the station on Pine Creek below Amy Gulch, where the mean annual total cadmium load for 1999–2004 was 39 kilograms per year (kg/yr), the mean estimated total lead load was about 1,700 kg/yr, and the mean annual total zinc load was 14,000 kg/yr. The trace-metal loads at stations on North Fork Coeur d’Alene River at Enaville, Ninemile Creek, and Canyon Creek also were relatively low. Trace-metal loads were highest at the station at Coeur d’Alene River near Harrison. The mean annual total cadmium load was 3,400 kg/yr, the mean total lead load was 240,000 kg/yr, and the mean total zinc load was 510,000 kg/yr for 1999–2004. Trace-metal loads at the station at South Fork Coeur d’Alene River near Pinehurst and the three stations on the Spokane River downstream of Coeur d’Alene Lake also were relatively high. Differences in metal loads, particularly lead, between stations upstream and downstream of Coeur d’Alene Lake likely are due to trapping and retention of metals in lakebed sediments. LOADEST software was used to estimate loads for water years 1999–2001 for many of the same sites discussed in this report. Overall, results from this study and those from a previous study are in good agreement. Observed differences between the two studies are attributable to streamflow differences in the two regression models, 1999–2001 and 1999-2004. Flow-weighted concentrations (FWCs) calculated from the estimated loads for 1999–2004 were examined to aid interpretation of metal load estimates, which were influenced by large spatial and temporal variations in streamflow. FWCs of total cadmium ranged from 0.04 micrograms per liter (µg/L) at Enaville to 14 µg/L at Ninemile Creek. Total lead FWCs were lowest at Long Lake (1.3 µg/L) and highest at Ninemile Creek (120 µg/L). Elevated total lead FWCs at Harrison confirmed that the high total lead loads at this station were not simply due to higher streamflow. Conversely, relatively low total lead loads combined with high total lead FWCs at Ninemile and Canyon Creeks reflected low streamflow but high concentrations of total lead. Very low total lead FWCs (1.3 to 2.7 µg/L) at the stations downstream of Coeur d’Alene Lake are a result both of deposition of lead-laden sediments in the lake and dilution by additional streamflow. Total zinc FWCs also demonstrated the effect of streamflow on load calculations, and highlighted source areas for zinc in the basin. Total zinc FWCs at Canyon and Ninemile Creeks, 1,600 µg/L and 2,200 µg/L, respectively, were by far the highest in the basin but contributed among the lowest total zinc loads due to their relatively low streamflow. Total zinc FWCs ranged from 38 to 67 µg/L at stations downstream of Coeur d’Alene Lake, but total zinc load estimates at these stations were relatively high because of high mean streamflow compared to other stations in the basin. Long-term regression models for 1991 to 2003 or 2004 were developed and annual trace-metal loads and FWCs were estimated for Pinehurst, Enaville, Harrison, and Post Falls to better understand the variability of metal loading with time. Long-term load estimates are similar to the results for 1999‑2004 in terms of spatial distribution of metal loads throughout the basin. LOADEST results for 1991-2004 indicated that statistically significant downward temporal trends for dissolved and total cadmium, dissolved zinc, and total lead were occurring at Pinehurst, Enaville, Harrison, and Post Falls. Additionally, data for Enaville and Post Falls showed significant downward trends for dissolved lead and total zinc loads; Harrison total zinc loads also decreased with time. The Mann-Kendall trend test results agreed with the LOADEST trend results in most cases, but gave contradictory results for total zinc at Pinehurst and at Post Falls. Long- and short-term load and flow-weighted concentration estimates yielded valuable information about metal storage and transport processes, and demonstrated that water quality data are a great aid in understanding these processes.

Idaho, Washington