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At least 127 records · Page 7Linked to original sources
USGS2011

Comparison of fish assemblages in two disjoined segments of an oxbow lake in relation to connectivity

Disconnection between adjacent habitat patches is one of the most notable factors contributing to the decreased biotic integrity of global ecosystems. Connectivity is especially threatened in river–floodplain ecosystems in which channel modifications have disrupted the lateral links between the main river channel and floodplain lakes. In this study, we examined the interaction between the interconnectedness of floodplain lakes and main river channels and fish assemblage descriptors. Fish assemblages in two segments of an oxbow lake, one connected to and the other isolated from the Yazoo River, Mississippi, were estimated with daytime boat electrofishing during 2007–2010. The frequency of connection for the connected segment ranged from zero to seven individual events per year (mean, ∼2). The timing of most connection events reflected regional precipitation patterns. Greater species richness, diversity, and evenness were observed in the connected segment. Additionally, the connected segment had a greater abundance of piscivores and periodic life history strategists. All fishes collected solely in the connected segment were typically riverine in nature, whereas fishes collected only in the disconnected segment were more lacustrine adapted. These results suggest that periodic connection and the associated habitat heterogeneity that it provides are important for maintaining fish species richness and diversity in large-river floodplain lakes. We suggest that maintenance or restoration of connection be an integral part of fluvial ecosystem management plans.

Mississippi↗
USGS2019

Assessing beach and island habitat loss in the Chesapeake Bay and Delmarva coastal bay region, USA, through processing of Landsat TM and OLI imagery: A case study

Beaches and islands provide economic value to humans and critical habitat for breeding and foraging wildlife. These ecosystems, however, are being severely impacted by global climate change and sea level rise through increased erosion and frequency of inundation. The case study presented here aimed to document island loss in the Chesapeake Bay and Delmarva coastal bay region of the United States using image processing techniques within a GIS from 1986 to 2016. Satellite imagery from Landsat Thematic Mapper (TM) and Operational Land Imager (OLI) sensors were processed within ArcMap 10.5 to determine spatial and temporal trends in island and beach habitat. Calculation of unweighted Cohen’s Kappa showed that classified scenes were, on average, within the range of moderate agreement between the classified Landsat scenes and the validation imagery within Google Earth (0.539). Recommendations regarding existing beach habitat management and future supplementation were created based on these results. From 1986 to 2016, island area declined by over 1,200 hectares (ha) with agriculture/open field (all open vegetated spaces) declining by nearly 82% and beach, surprisingly, increasing nearly 2%. This study was the first to document Chesapeake Bay region-wide island loss beyond the mid-2000s. The accuracy of this study was limited slightly by the 30 m spatial resolution of the imagery used. This technique may be best suited for documenting trends on large islands and along the mainland coastline.

Maryland, Virginia↗
USGS2008

Recent sedimentation patterns within the central Atchafalaya Basin, Louisiana

Sediment deposition and storage are important functions of forested bottomlands, yet documentation and interpretation of sedimentation processes in these systems remain incomplete. Our study was located in the central Atchafalaya Basin, Louisiana, a distributary of the Mississippi River and contains the largest contiguously forested riparian wetland in North America, which suffers from high sedimentation in some areas and hypoxia in others. We established 20 floodplain transects reflecting the distribution of depositional environments within the central Basin and monitored general and local sediment deposition patterns over a three-year period (2000-2003). Deposition rate, sediment texture, bulk density, and loss on ignition (LOI, percent organic material) were determined near or just above artificial markers (clay pads) located at each station per transect. Transect mean sedimentation rates ranged from about 2 to 42 mm/yr, mean percent organic material ranged from about 7% to 28%, mean percent sand (> 63 ??) ranged from about 5% to 44%, and bulk density varied from about 0.4 to 1.3. The sites were categorized into five statistically different clusters based on sedimentation rate; most of these could be characterized by a suite of parameters that included hydroperiod, source(s) of sediment-laden water, hydraulic connectivity, flow stagnation, and local geomorphic setting along transect (levee versus backswamp), which lead to distinct spatial sedimentation patterns. Sites with low elevation (long hydroperiod), high hydraulic connectivity to multiple sources of sediment-laden water, and hydraulic damming (flow stagnation) featured the highest amounts of sediment trapping; the converse in any of these factors typically diminished sediment trapping. Based on aerial extent of clusters, the study area potentially traps 6,720,000 Mg of sediment annually, of which, 820,000 Mg represent organic materials. Thus, the Atchafalaya Basin plays a substantial role in lowland sediment (and associated contaminant) storage, including the sequestration of carbon. Findings on local sedimentation patterns may aid in management of flow to control sediment deposition and reduce hypoxia. ?? 2008, The Society of Wetland Scientists.

Wetlands↗
USGS2022

Use of high-resolution topobathymetry to assess shoreline topography and potential future development of a slack water harbor near Dardanelle, Arkansas, October 2021

The U.S. Army Corps of Engineers (USACE), Southwestern Division, Little Rock District Civil Works program has a mission to maintain cohesion between physical and naturally developed environments. The USACE authorized the development of an off-channel harbor (hereinafter referred to as the “proposed slack water harbor”) along the McClellan-Kerr Arkansas River Navigation System at river mile 202.6, and an initial evaluation of shoreline stability and adjacent land near the proposed harbor was considered essential in establishing a baseline for potential effects and future monitoring. In October 2021, the U.S. Geological Survey, in cooperation with the USACE, completed high-resolution bathymetric (underwater elevation) and topographic surveys of the Arkansas River and a quarry at the location of the proposed slack water harbor near Dardanelle, Arkansas, using a combination of multibeam sound navigation and ranging (sonar) and high-resolution, low-altitude aerial light detection and ranging (lidar) data to provide data and analysis needed for as-built information and future monitoring of river shoreline and floodplain management and maintenance. Bathymetric data were collected using a high-resolution multibeam mapping system, which consists of a multibeam echosounder and an inertial navigation system mounted on a marine survey vessel. Data were collected as the vessel traversed the river and quarry along overlapping survey lines distributed throughout the areas. Topographic data were collected as a lidar point cloud using an unmanned aircraft system (UAS) with a YellowScan Vx20–100 lidar payload, which consists of the lidar scanner and an inertial navigation system. The lidar point cloud data were collected as the UAS followed two sets of parallel transect lines, oriented perpendicular to each other (nominally north to south and east to west) on separate flights. The bathymetric and UAS topographic datasets were combined with topographic data extracted from publicly available aerial lidar data collected in 2014 to create a multisource point cloud classified as “ground” (code 2) according to the American Society for Photogrammetry and Remote Sensing standard lidar point classes in the proposed harbor area and surroundings, from which topographic contours were derived.

Arkansas↗
USGS2012

Evidence of local adaptation in westslope cutthroat trout

An understanding of the process of local adaptation would allow managers to better protect and conserve species. Many salmonids are in need of such efforts, and because they often persist in differing, isolated environments, they are useful organisms for studying local adaptation. In addition, the temperature sensitivity of salmonids provides a likely target for natural selection. We studied thermal adaptation in four wild populations and one hatchery stock of westslope cutthroat trout Oncorhynchus clarkii lewisi . The mean summer temperatures of source streams ranged from 6.7°C to 11.2°C. Embryos were collected from the wild, and embryonic development, embryonic survival, and juvenile growth were determined. A significant relationship between median embryonic survival and source stream temperature was detected. Based on a rank test, populations from colder streams had a greater decline in median embryonic survival at warm temperatures than populations from warmer streams. Embryonic development and juvenile growth did not appear to be influenced by source. These findings suggest that populations are thermally adapted to their source streams and this should be considered by managers. However, further study is necessary to sort out the potential confounding factors, whether genetic or epigenetic.

Transactions of the American Fisheries Society↗
USGS2008

The effects of water-level fluctuations on vegetation in a Lake Huron wetland

The diversity and resultant habitat value of wetland plant communities in the Laurentian Great Lake's are dependent on water-level fluctuations of varying frequency and amplitude. Conceptual models have described the response of vegetation to alternating high and low lake levels, but few quantitative studies have documented the changes that occur. In response to recent concerns over shoreline management activities during an ongoing period of low lake levels in lakes Superior, Michigan, and Huron that began in 1999, we analyzed a quantitative data set from Saginaw Bay of Lake Huron collected from 1988 to 1993 during a previous lake-level decline to provide the needed information on vegetation responses. Transects were established that followed topographic contours with water-level histories that differed across a six-year period, ranging from barely flooded to dewatered for varying numbers of years to never dewatered. Percent cover data from randomly placed quadrats along those transects were analyzed to assess floristic changes over time, document development of distinct plant assemblages, and relate the results to lake-level changes. Ordinations showed that plant assemblages sorted out by transects that reflect differing water-level histories. Distinction of assemblages was maintained for at least three years, although the composition and positioning of those assemblages changed as lake levels changed. We present a model that uses orthogonal axes to plot transects by years out of water against distance above water and sorted those transects in a manner that matched ordination results. The model suggests that vegetation response following dewatering is dependent on both position along the water level/soil moisture gradient and length of time since dewatering. This study provided quantitative evidence that lake-level fluctuations drive vegetative change in Great Lakes wetlands, and it may assist in making decisions regarding shoreline management in areas that historically supported wetlands. ?? 2008, The Society of Wetland Scientists.

Wetlands↗
USGS2005

Home range and survival of breeding painted buntings on Sapelo Island, Georgia

The southeastern United States population of the painted bunting ( Passerina ciris ) has decreased approximately 75% from 1966–1996 based on Breeding Bird Survey trends. Partners in Flight guidelines recommend painted bunting conservation as a high priority with a need for management by state and federal agencies. Basic information on home range and survival of breeding painted buntings will provide managers with required habitat types and estimates of land areas necessary to maintain minimum population sizes for this species. We radiotracked after-second-year male and after-hatching-year female buntings on Sapelo Island, Georgia, during the breeding seasons (late April-early August) of 1997 and 1998. We used the animal movement extension in ArcView to determine fixed-kernel home range in an unmanaged maritime shrub and managed 60–80-year-old pine ( Pinus spp.)-oak ( Quercus spp.) forest. Using the Kaplan-Meier method, we estimated an adult breeding season survival of 1.00 for males ( n = 36) and 0.94 (SE = 0.18) for females ( n = 27). Painted bunting home ranges were smaller in unmanaged maritime shrub (female: kernel = 3.5 ha [95% CI: 2.5-4.5]; male: kernel = 3.1 ha [95% CI: 2.3-3.9]) compared to those in managed pine-oak forests (female: kernel = 4.7 ha [95% CI: 2.8-6.6]; male: kernel = 7.0 ha [95% CI: 4.9-9.1]). Buntings nesting in the managed pine-oak forest flew long distances (≥300 m) to forage in salt marshes, freshwater wetlands, and moist forest clearings. In maritime shrub buntings occupied a compact area and rarely moved long distances. The painted bunting population of Sapelo Island requires conservation of maritime shrub as potential optimum nesting habitat and management of nesting habitat in open-canopy pine-oak sawtimber forests by periodic prescribed fire (every 4–6 years) and timber thinning within a landscape that contains salt marsh or freshwater wetland openings within 700 m of those forests.

Georgia↗
USGS2012

Contributions of Arctic PRISM to monitoring western hemispheric shorebirds

Long-term monitoring of populations is of paramount importance to understanding responses oforganisms to global environmental change and to evaluating whether conservation practices are yielding intended results through time (Wiens 2009). The population status of many shorebird species, the focus of this volume, remain poorly known. Long-distance migrant shorebirds have proven particularly difficult to monitor, in part because of their highly migratory nature and ranges that extend into highly inaccessible regions. As migrant shorebirds travel the length of the hemisphere, they congregate and disperse in ways that vary among species, locations, and years, presenting serious challenges to designing and implementing monitoring programs. Rigorous field and quantitative methods that estimate population size and monitor trends are vitally needed to direct and evaluate effective conservation measures. Many management efforts depend on unbiased population size estimates; for example, the shorebird conservation plans for both Canada and the United States seek to restore populations to levels calculated for the 1970s based on the best information available from existing surveys. Further, federal wildlife agencies within the United States and Canada have mandates to understand the state of their nations' resources under various conventions for the protection of migratory birds. Accurate estimates of population size are vital statistics for a variety of conservation activities, such as prioritizing species for conservation action and setting management targets. Areas of essential habitat, such as those designated under the Western Hemisphere Shorebird Reserve Network, the Important Bird Areas program of BirdLife International and the National Audubon Society, or Canada's National Wildlife Areas program, are all evaluated on the basis ofproportions of species' populations which they contain. The size, and trends in size, ofa species' population are considered key information for assessing its vulnerability and subsequent listing under the U.S. Endangered Species Act and the Canadian Species at Risk Act. To meet the need for information on population size and trends, shorebird biologists from Canada and the United States proposed a shared blueprint for shorebird monitoring across the Western Hemisphere in the late 1990s; this effort was undertaken in concert with the development of the Canadian and U.S. Shorebird Conservation Plans (Donaldson et al. 2000, Brown et aL 2001). Soon thereafter, partners in the monitoring effort adopted the name "Program for Regional and International Shorebird Monitoring" (PRISM). Among the primary objectives of PRISM were to estimate the population sizes and trends of breeding North American shorebirds and describe their distributions (Bart et al. 2002). PRISM members evaluated ongoing and potential monitoring approaches to address 74 taxa (including subspecies) and proposed a combination of arctic andboreal breeding surveys, temperate breeding and non-breeding surveys, and neotropical surveys.

Book chapter↗
USGS2018

Alaska

Alaska is the largest state in the Nation, almost one-fifth the size of the combined lower 48 United States, and is rich in natural capital resources. Alaska is often identified as being on the front lines of climate change since it is warming faster than any other state and faces a myriad of issues associated with a changing climate. The cost of infrastructure damage from a warming climate is projected to be very large, potentially ranging from $110 to $270 million per year, assuming timely repair and maintenance. Although climate change does and will continue to dramatically transform the climate and environment of the Arctic, proactive adaptation in Alaska has the potential to reduce costs associated with these impacts. This includes the dissemination of several tools, such as guidebooks to support adaptation planning, some of which focus on Indigenous communities. While many opportunities exist with a changing climate, economic prospects are not well captured in the literature at this time. As the climate continues to warm, there is likely to be a nearly sea ice-free Arctic during the summer by mid-century. Ocean acidification is an emerging global problem that will intensify with continued carbon dioxide (CO 2 ) emissions and negatively affects organisms. Climate change will likely affect management actions and economic drivers, including fisheries, in complex ways. The use of multiple alternative models to appropriately characterize uncertainty in future fisheries biomass trajectories and harvests could help manage these challenges. As temperature and precipitation increase across the Alaska landscape, physical and biological changes are also occurring throughout Alaska’s terrestrial ecosystems. Degradation of permafrost is expected to continue, with associated impacts to infrastructure, river and stream discharge, water quality, and fish and wildlife habitat. Longer sea ice-free seasons, higher ground temperatures, and relative sea level rise are expected to exacerbate flooding and accelerate erosion in many regions, leading to the loss of terrestrial habitat in the future and in some cases requiring entire communities or portions of communities to relocate to safer terrain. The influence of climate change on human health in Alaska can be traced to three sources: direct exposures, indirect effects, and social or psychological disruption. Each of these will have different manifestations for Alaskans when compared to residents elsewhere in the United States. Climate change exerts indirect effects on human health in Alaska through changes to water, air, and soil and through ecosystem changes affecting disease ecology and food security, especially in rural communities. Alaska’s rural communities are predominantly inhabited by Indigenous peoples who may be disproportionately vulnerable to socioeconomic and environmental change; however, they also have rich cultural traditions of resilience and adaptation. The impacts of climate change will likely affect all aspects of Alaska Native societies, from nutrition, infrastructure, economics, and health consequences to language, education, and the communities themselves. The profound and diverse climate-driven changes in Alaska’s physical environment and ecosystems generate economic impacts through their effects on environmental services. These services include positive benefits directly from ecosystems (for example, food, water, and other resources), as well as services provided directly from the physical environment (for example, temperature moderation, stable ground for supporting infrastructure, and smooth surface for overland transportation). Some of these effects are relatively assured and in some cases are already occurring. Other impacts are highly uncertain, due to their dependence on the structure of global and regional economies and future human alterations to the environment decades into the future, but they could be large. In Alaska, a range of adaptations to changing climate and related environmental conditions are underway and others have been proposed as potential actions, including measures to reduce vulnerability and risk, as well as more systemic institutional transformation.

Report↗
USGS2010

Space use and habitat selection of migrant and resident American Avocets in San Francisco Bay

San Francisco Bay is a wintering area for shorebirds, including American Avocets (Recurvirostra americana). Recently, a new resident population of avocets has emerged, presumably because of the development of tidal marshes into salt-evaporation ponds. In habitat restoration now underway, as many as 90% of salt ponds will be restored to tidal marsh. However, it is unknown if wintering and resident avocets coexist and if their requirements for space and habitat differ, necessitating different management for their populations to be maintained during restoration. We captured and radio-marked wintering avocets at a salt pond and a tidal flat to determine their population status (migrant or resident) and examine their space use and habitat selection. Of the radio-marked avocets, 79% were migrants and 21% were residents. At the salt pond, residents' fidelity to their location of capture was higher, and residents moved less than did migrants from the same site. Conversely, on the tidal flat, fidelity of residents to their site of capture was lower, and residents' home ranges were larger than those of migrants from the same site. Habitat selection of migrants and residents differed little; however, capture site influenced habitat selection far more than the birds' status as migrants or residents. Our study suggests that individual avocets have high site fidelity while wintering in San Francisco Bay, although the avocet as a species is plastic in its space use and habitat selection. This plasticity may allow wintering migrant and resident avocets to adapt to habitat change in San Francisco Bay. ?? The Cooper Ornithological Society 2010.

Condor↗
USGS2006

Comparison of native and introduced flathead catfish populations in Alabama and Georgia: Growth, mortality, and management

We compared growth of flathead catfish Pylodictis olivaris from two native populations in Alabama (Coosa and Tallapoosa rivers) and two introduced populations in Georgia (Ocmulgee and Satilla rivers). We also compared mortality rates and potential outcomes of various management regimes (minimum length limits [MLLs]) among the populations. Total length-log10(age) regression slopes for introduced fish were higher than those for native fish, and von Bertalanffy growth coefficients (K) were greater for introduced fish (Ocmulgee: 0.195; Satilla: 0.201) than for native individuals (Coosa: 0.057; Tallapoosa: 0.059). Therefore, introduced flathead catfish grew more rapidly than those in their native range. Mortality (instantaneous mortality rate, Z) was higher in the Satilla River population (Z = -0.602) than in the Ocmulgee River (Z = -0.227) and Coosa River (Z = -0.156) populations. However, fish in the Satilla River population had been introduced for only 10 years and presumably did not reach their theoretical maximum age, potentially biasing the mortality estimate for that population. Simulation of management regimes in Fishery Analyses and Simulation Tools software predicted that maximum biomass of flathead catfish in the Ocmulgee (1,668 kg) and Satilla (1,137 kg) rivers was substantially larger than that in the Coosa (873 kg) and Tallapoosa (768 kg) populations. However, increased exploitation rates in the Ocmulgee and Satilla River populations resulted in dramatic declines in overall biomass, especially at lower MLLs (254 and 356 mm, respectively). Therefore, in systems where introduced flathead catfish represent an important recreational fishery but have dramatically reduced the abundance of native fishes through predation, minimal protection is recommended. We contend that rapid growth of introduced flathead catfish has major implications for their management and the conservation of native fishes. ?? Copyright by the American Fisheries Society 2006.

North American Journal of Fisheries Management↗
USGS2007

Natural landscape and stream segment attributes influencing the distribution and relative abundance of riverine smallmouth bass in Missouri

Protecting and restoring fish populations on a regional basis are most effective if the multiscale factors responsible for the relative quality of a fishery are known. We spatially linked Missouri's statewide historical fish collections to environmental features in a geographic information system, which was used as a basis for modeling the importance of landscape and stream segment features in supporting a population of smallmouth bass Micropterus dolomieu. Decision tree analyses were used to develop probability-based models to predict statewide occurrence and within-range relative abundances. We were able to identify the range of smallmouth bass throughout Missouri and the probability of occurrence within that range by using a few broad landscape variables: the percentage of coarse-textured soils in the watershed, watershed relief, and the percentage of soils with low permeability in the watershed. The within-range relative abundance model included both landscape and stream segment variables. As with the statewide probability of occurrence model, soil permeability was particularly significant. The predicted relative abundance of smallmouth bass in stream segments containing low percentages of permeable soils was further influenced by channel gradient, stream size, spring-flow volume, and local slope. Assessment of model accuracy with an independent data set showed good concordance. A conceptual framework involving naturally occurring factors that affect smallmouth bass potential is presented as a comparative model for assessing transferability to other geographic areas and for studying potential land use and biotic effects. We also identify the benefits, caveats, and data requirements necessary to improve predictions and promote ecological understanding. ?? Copyright by the American Fisheries Society 2007.

North American Journal of Fisheries Management↗
USGS2005

Native fishes of the Sacramento-San Joaquin drainage, California: A history of decline

In this paper, we review information regarding the status of the native fishes of the combined Sacramento River and San Joaquin River drainages (hereinafter the "Sacramento-San Joaquin drainage") and the factors associated with their declines. The Sacramento-San Joaquin drainage is the center of fish evolution in California, giving rise to 17 endemic species of a total native fish fauna of 28 species. Rapid changes in land use and water use beginning with the Gold Rush in the 1850s and continuing to the present have resulted in the extinction, extirpation, and reduction in range and abundance of the native fishes. Multiple factors are associated with the declines of native fishes, including habitat alteration and loss, water storage and diversion, flow alteration, water quality, and invasions of alien species. Although native fishes can be quite tolerant of stressful physical conditions, in some rivers of the drainage the physical habitat has been altered to the extent that it is now more suited for alien species. This interaction of environmental changes and invasions of alien species makes it difficult to predict the benefits of restoration efforts to native fishes. Possible effects of climate change on California's aquatic habitats add additional complexity to restoration of native fishes. Unless protection and restoration of native fishes is explicitly considered in future water management decisions, declines are likely to continue.

California↗
USGS2011

Predicting future changes in Muskegon River Watershed game fish distributions under future land cover alteration and climate change scenarios

Future alterations in land cover and climate are likely to cause substantial changes in the ranges of fish species. Predictive distribution models are an important tool for assessing the probability that these changes will cause increases or decreases in or the extirpation of species. Classification tree models that predict the probability of game fish presence were applied to the streams of the Muskegon River watershed, Michigan. The models were used to study three potential future scenarios: (1) land cover change only, (2) land cover change and a 3°C increase in air temperature by 2100, and (3) land cover change and a 5°C increase in air temperature by 2100. The analysis indicated that the expected change in air temperature and subsequent change in water temperatures would result in the decline of coldwater fish in the Muskegon watershed by the end of the 21st century while cool- and warmwater species would significantly increase their ranges. The greatest decline detected was a 90% reduction in the probability that brook trout Salvelinus fontinalis would occur in Bigelow Creek. The greatest increase was a 276% increase in the probability that northern pike Esox lucius would occur in the Middle Branch River. Changes in land cover are expected to cause large changes in a few fish species, such as walleye Sander vitreus and Chinook salmon Oncorhynchus tshawytscha, but not to drive major changes in species composition. Managers can alter stream environmental conditions to maximize the probability that species will reside in particular stream reaches through application of the classification tree models. Such models represent a good way to predict future changes, as they give quantitative estimates of the n-dimensional niches for particular species.

Michigan↗
USGS2024

An introduction to Criteria for Reporting and Evaluating Exposure Datasets (CREED) for use in environmental assessments

Risks posed by environmental exposure to chemicals are routinely assessed to inform activities ranging from environmental status reporting to authorization and registration of chemicals for commercial uses. Environmental risk assessment generally relies on two key values generated from exposure data and ecotoxicity data. Data sets of measured concentrations of chemicals in environmental matrices, referred to here as exposure data, are widely used to support environmental risk management, decision-making, and reporting, such as for chemical screening, ecological or human health risk assessments, and establishment of guidelines. Practitioners have developed schemes to determine the suitability of ecotoxicity data for specific purposes, focused on evaluating reliability and relevance, but analogous schemes are not available for exposure data. Moreover, regulatory guidance arguably provides less resolution on reporting and evaluating exposure data sets compared to ecotoxicity data. The evaluation of exposure data sets is subject to limitations from variable or unreported data quality objectives and/or from differences in expert judgments, potentially introducing bias and leading to decisions based on flawed and/or inconsistent information. Exposure data sets should be evaluated for reliability and relevance prior to use in environmental assessments. This paper is the first of a four-paper series detailing the outcomes of a Society of Environmental Toxicology and Chemistry technical workshop that has developed Criteria for Reporting and Evaluating Exposure Datasets (CREED). The workshop participants developed practical, systematic criteria for consistent and transparent evaluation of the reliability (quality) and relevance (fitness for purpose) of exposure data. This guidance should apply to many different (unspecified) purposes of assessment. CREED can be used to evaluate existing data sets, but can also inform data generators interested in improving their data collection and reporting to maximize data utility to other users. This first paper details existing frameworks for the evaluation of exposure data sets and demonstrates the need for CREED, drawing from different regulatory assessments, and describes the technical workshop.

Integrated Environmental Assessment and Management↗
USGS2011

Genetic diversity and variation of mitochondrial DNA in native and introduced bighead carp

The bighead carp Hypophthalmichthys nobilis is native to China but has been introduced to over 70 countries and is established in many large river systems. Genetic diversity and variation in introduced bighead carp have not previously been evaluated, and a systematic comparison among fish from different river systems was unavailable. In this study, 190 bighead carp specimens were sampled from five river systems in three countries (Yangtze, Pearl, and Amur rivers, China; Danube River, Hungary; Mississippi River basin, USA) and their mitochondrial 16S ribosomal RNA gene and D-loop region were sequenced (around 1,345 base pairs). Moderate genetic diversity was found in bighead carp, ranging from 0.0014 to 0.0043 for nucleotide diversity and from 0.6879 to 0.9333 for haplotype diversity. Haplotype analysis provided evidence that (1) multiple haplotype groups might be present among bighead carp, (2) bighead carp probably originated from the Yangtze River, and (3) bighead carp in the Mississippi River basin may have some genetic ancestry in the Danube River. The analysis of molecular variance showed significant genetic differentiation among these five populations but also revealed limited differentiation between the Yangtze and Amur River bighead carp. This large-scale study of bighead carp genetic diversity and variation provides the first global perspective of bighead carp in the context of biodiversity conservation as well as invasive species control and management.

Transactions of the American Fisheries Society↗
USGS2006

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI’s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI’s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists’ League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program’s development and success. The value of ARMI’s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI’s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI’s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗
USGS2016

Analysis of hydrologic and geochemical time-series data at James Cave, Virginia: Implications for epikarst influence on recharge in Appalachian karst aquifers

The epikarst, which consists of highly weathered rock in the upper vadose zone of exposed karst systems, plays a critical role in determining the hydrologic and geochemical characteristics of recharge to an underlying karst aquifer. This study utilized time series (2007–2014) of hydrologic and geochemical data of drip water collected within James Cave, Virginia, to examine the influence of epikarst on the quantity and quality of recharge in a mature, doline-dominated karst terrain. Results show a strong seasonality of both hydrology and geochemistry of recharge, which has implications for management of karst aquifers in temperate climatic zones. First, recharge (discharge from the epikarst to the underlying aquifer) reaches a maximum between late winter and early spring, with the onset of the recharge season ranging from as early as December to as late as March during the study period. The timing and duration of the recharge season were found to be a function of precipitation in excess of evapotranspiration on a seasonal time scale. Secondly, seasonally variable residence times for water in the epikarst influence rock-water interaction and, hence, the geochemical characteristics of recharge. Overall, results highlight the strong and complex influence that the epikarst has on karst recharge, which requires long-term and high-resolution data sets to accurately understand and quantify.

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