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At least 127 records · Page 7Linked to original sources

USGS2022

Brief oil exposure reduces fitness in wild Gulf of Mexico mahi-mahi (Coryphaena hippurus)

The Deepwater Horizon (DWH) disaster released 3.19 million barrels of crude oil into the Gulf of Mexico (GOM) in 2010, overlapping the habitat of pelagic fish populations. Using mahi-mahi ( Coryphaena hippurus )─a highly migratory marine teleost present in the GOM during the spill─as a model species, laboratory experiments demonstrate injuries to physiology and behavior following oil exposure. However, more than a decade postspill, impacts on wild populations remain unknown. To address this gap, we exposed wild mahi-mahi to crude oil or control conditions onboard a research vessel, collected fin clip samples, and tagged them with electronic tags prior to release into the GOM. We demonstrate profound effects on survival and reproduction in the wild. In addition to significant changes in gene expression profiles and predation mortality, we documented altered acceleration and habitat use in the first 8 days oil-exposed individuals were at liberty as well as a cessation of apparent spawning activity for at least 37 days. These data reveal that even a brief and low-dose exposure to crude oil impairs fitness in wild mahi-mahi. These findings offer new perspectives on the lasting impacts of the DWH blowout and provide insight about the impacts of future deep-sea oil spills.

Environmental Science and Technology↗

USGS2018

An underwater observation dataset for fish classification and fishery assessment

Using Dual-Frequency Identification Sonar (DIDSON), fishery acoustic observation data was collected from the Ocqueoc River, a tributary of Lake Huron in northern Michigan, USA. Data were collected March through July 2013 and 2016 and included the identification, via technology or expert analysis, of eight fish species as they passed through the DIDSON’s field of view. A set of short DIDSON clips containing identified fish was curated. Additionally, two other datasets were created that include visualizations of the acoustic data and longer DIDSON clips. These datasets could complement future research characterizing the abundance and behavior of valued fishes such as walleye ( Sander vitreus ) or white sucker ( Catostomus commersonii ) or invasive fishes such as sea lamprey ( Petromyzon marinus ) or European carp ( Cyprinus carpio ). Given the abundance of DIDSON data and the fact that a portion of it is labeled, these data could aid in the creation of machine learning tools from DIDSON data, particularly for invasive sea lamprey which are amply represented and a destructive invader of the Laurentian Great Lakes.

Scientific Data↗

USGS2019

Three-dimensional geologic map of the southern Carson Sink, Nevada, including the Fallon FORGE area

The three-dimensional (3–D) geologic map characterizes the subsurface in the southern Carson Sink region. We created the 3–D map by integrating the results from seismic-reflection, potential-field-geophysical, and lithologic well-logging investigations completed in and around the Fallon FORGE site as part of the U.S. Department of Energy Frontier Observatory for Research in Geothermal Energy (FORGE) initiative from 2015–2018. The FORGE initiative was part of an effort to develop the technologies, techniques, and knowledge needed to make enhanced geothermal systems a commercially viable electricity-generation option for the United States. Geologic units and structures mapped during the Fallon FORGE study, which particularly focused on the Mesozoic basement, were extrapolated to create the 3–D map of the southern Carson Sink area. The 3–D map area is 10 km wide along the east-west and north-south axes and extends 2.5 km below sea level, ~3.7 km below the land surface. Views of the map include horizontal and vertical sections and oblique perspective views from several angles. We describe the geologic units and structures and discuss the methods used to integrate the geologic and geophysical information in a 3–D geologic interpretation. We provide digital data for elements of the map, such as individual 3–D fault and stratigraphic surfaces and surface-fault traces. Input data are available from various data repositories through cited web links. A brief movie displaying the 3–D map is available at https://doi.org/10.3133/sim3437 .

Nevada↗

USGS1999

Cobalt-rich ferromanganese crusts in the Pacific

Co-rich Fe-Mn crusts occur throughout the Pacific on seamounts, ridges, and plateaus where currents have kept the rocks swept clean of sediments at least intermittently for millions of years. Crusts precipitate out of cold ambient sea water onto hard-rock substrates forming pavements up to 250 mm thick. Crusts are important as a potential resource for Co, Ni, Pt, Mn, Tl, Te, and other metals, as well as for the paleoclimate signals stored in their stratigraphic layers. Crusts form at water depths of about 400 to 4000 m, with the thickest and most Co-rich crusts occurring at depths of about 800 to 2500 m, which may vary on a regional scale. Gravity processes, sediment cover, submerged and emergent reefs, and currents control the distribution and thickness of crusts on seamounts. Crusts occur on a variety of substrate rocks that generally decrease in the order, breccia, basalt, phosphorite, limestone, hyaloclastite, and mudstone. Because of this wide variety of substrate types, crusts are difficult to distinguish from the substrate using remotely sensed data, such as geophysical measurements, but are generally weaker and lighter-weight than the substrate. Crusts can be distinguished from the substrates, however, by their much higher gamma radiation levels. The mean dry bulk density of crusts is 1.3 g/cm3, the mean porosity is 60%, and the mean surface area is extremely high, 300 m2/g. Crusts generally grow at rates of 1 to 10 mm/Ma. Crust surfaces are botryoidal, which may be modified to a variety of forms by current erosion. In cross-section, crusts are generally layered, with individual layers displaying massive, botryoidal, laminated, columnar, or mottled textures. Characteristic layering is persistent regionally in the Pacific. Crusts are composed of ferruginous vernadite (δ-MnO2) and X-ray amorphous Fe oxyhydroxide, with moderate amounts of carbonate fluorapatite (CFA) in thick crusts and minor amounts of quartz and feldspar in most crusts. Elements most commonly associated with the vernadite phase include Mn, Co, Ni, Cd, and Mo, whereas those most commonly associated with Fe oxyhydroxide are Fe and As. Detrital phases are represented by Si, Al, K, Ti, Cr, Mg, Fe, and Na; the CFA phase by Ca, P, Sr, Y, and CO2; and a residual biogenic phase by Ba, Sr, Ce, Cu, V, Ca, and Mg. Crusts contain Co contents up to about 2.3%, Ni to 1%, and Pt to 3 ppm, with mean Fe/Mn ratios of 0.6 to 1.3. Fe/Mn decreases, whereas Co, Ni, Ti, and Pt increase in central Pacific crusts and Fe/Mn, Si, and Al increase in continental margin crusts and in crusts with proximity to west Pacific volcanic arcs. Vernadite and CFA-related elements decrease, whereas Fe, Cu, and detrital-related elements increase with increasing water depth of crust occurrence. Cobalt, Ce, Tl, and maybe also Ti, Pb, and Pt are strongly concentrated in crusts over other metals because of oxidation reactions. Total rare earth elements (REEs) commonly vary between 0.1% and 0.3% and are derived from sea water along with other hydrogenetic elements, Co, Mn, Ni, etc. Platinum, Rh, Ir, and some Ru in crusts are also derived from sea water, whereas Pd and the remainder of the Ru derive from detrital minerals. The older parts of thick crusts were phosphatized during at least two global phosphogenic events during the Tertiary, which mobilized and redistributed elements in those parts of the crusts. 240Silicon, Fe, Al, Th, Ti, Co, Mn, Pb, and U are commonly depleted, whereas Ni, Cu, Zn, Y, REEs, Sr, and Pt are commonly enriched in phosphatized layers compared to younger nonphosphatized layers. The dominant controls on the concentration of elements in crusts include the concentration of metals in sea water and their ratios, colloid surface charge, types of complexing agents, surface area, and growth rates. Crusts act as closed systems with regard to the isotopic ratios of Be, Nd, Pb, Hf, Os, and U-series, which in part have been used to date crusts and in part used as isotopic tracers of paleoceanographic and paleoclimatic conditions. Those tracers are especially useful in delineating temporal changes in deep-ocean circulation. Research and development on the technology of mining crusts are only in their infancy. Detailed maps of crust deposits and a better understanding of small-scale seamount topography are required to design the most appropriate mining equipment.

Book chapter↗

USGS2017

Smartphone technologies and Bayesian networks to assess shorebird habitat selection

Understanding patterns of habitat selection across a species’ geographic distribution can be critical for adequately managing populations and planning for habitat loss and related threats. However, studies of habitat selection can be time consuming and expensive over broad spatial scales, and a lack of standardized monitoring targets or methods can impede the generalization of site-based studies. Our objective was to collaborate with natural resource managers to define available nesting habitat for piping plovers ( Charadrius melodus ) throughout their U.S. Atlantic coast distribution from Maine to North Carolina, with a goal of providing science that could inform habitat management in response to sea-level rise. We characterized a data collection and analysis approach as being effective if it provided low-cost collection of standardized habitat-selection data across the species’ breeding range within 1–2 nesting seasons and accurate nesting location predictions. In the method developed, >30 managers and conservation practitioners from government agencies and private organizations used a smartphone application, “iPlover,” to collect data on landcover characteristics at piping plover nest locations and random points on 83 beaches and barrier islands in 2014 and 2015. We analyzed these data with a Bayesian network that predicted the probability a specific combination of landcover variables would be associated with a nesting site. Although we focused on a shorebird, our approach can be modified for other taxa. Results showed that the Bayesian network performed well in predicting habitat availability and confirmed predicted habitat preferences across the Atlantic coast breeding range of the piping plover. We used the Bayesian network to map areas with a high probability of containing nesting habitat on the Rockaway Peninsula in New York, USA, as an example application. Our approach facilitated the collation of evidence-based information on habitat selection from many locations and sources, which can be used in management and decision-making applications.

U.S Atlantic Coast↗

USGS2003

Mapping the seabed and habitats in National Marine Sanctuaries - Examples from the East, Gulf and West Coasts

The National Marine Sanctuary System requires seabed and habitat maps to serve as a basis for managing sanctuary resources and for conducting research. NOAA, the agency that manages the sanctuaries, and the USGS have conducted mapping projects in three sanctuaries (Stellwagen Bank NMS, Flower Garden Banks NMS, and Channel Islands NMS) with an emphasis on collaboration of geologists and biologists from the two agencies and from academic institutions. Mapping of seabed habitats is a developing field that requires the integration of geologic and biologic studies and the use of swath imaging techniques such as multibeam and sidescan sonar. Major products of swath mapping are shaded-relief topographic imagery which shows seabed features in great detail, and backscatter imagery which provides an indication of the types of materials that constitute the seabed. Sea floor images provide an excellent basis for conducting the groundtruthing studies (using video, photo, and sampling techniques) that are required to collect the data necessary for making meaningful interpretative maps of the seabed. The compilation of interpretive maps showing seabed environments and habitats also requires the development of a sea floor classification system that will be a basis for comparing, managing, and researching characteristic areas of the seabed. Seabed maps of the sanctuaries are proving useful for management and research decisions that address commercial and recreational fishing, habitat disturbance, engineering projects, tourism, and cultural resources.

Marine Technology Society Journal↗

USGS2024

Monitoring marine eruptions

Introduction Submarine volcanoes produce much of the same seismicity and eruptive activity as subaerial volcanoes and can pose hazards to society. Although they can be monitored with similar techniques and methods as described in other chapters of this volume, their submerged location brings unique challenges. This chapter addresses these challenges and provides recommendations for monitoring volcanoes fully or partly in marine environments to meet the capabilities described in other chapters of this volume. The United States and its territories host dozens of submarine volcanoes with most (around 60) in the Commonwealth of the Northern Mariana Islands. Approximately 20 of the Northern Mariana Islands submarine volcanoes are known to be hydrothermally active, and 10 have confirmed eruptions since the 1950s (for example, Baker and others, 2008; Tepp and others, 2019a). Nine of those volcanoes were considered by the National Volcanic Threat Assessment (Ewert and others, 2018) to have a combination of eruptive type and summit depth that poses a higher risk of hazardous eruptions, although only one was listed as a moderate (level 3) threat. Other notable submarine volcanoes of interest to the United States that have historically erupted are Axial Seamount off the Washington State coast, Kamaʻehuakanaloa in Hawaiʻi, and Vailuluʻu seamount in American Samoa. All of these, however, have a low risk of hazards because of their depth (greater than 600 meters below sea level) and eruptive type and so are not included in the National Volcanic Threat Assessment. In addition to submarine volcanoes, the submerged flanks of island volcanoes can also be a source of hazardous submarine eruptions—for example, the 1877 eruption of Mauna Loa, Hawai‘i, in Kealakekua Bay (Wanless and others, 2006). The most notable submarine eruption in recent times was the 2022 eruption of Hunga Tonga–Hunga Haʻapai in Tonga, which was one of the largest eruptions on Earth in the past 100 years. It created a massive volcanic plume, unprecedented shock waves, and far-reaching tsunami (Lynett and others, 2022). Other recent submarine eruptions in the Pacific Ocean Basin have produced subaerial plumes that reached aircraft heights (Carey and others, 2014) and large pumice rafts that can affect marine traffic and harbors (for example, Jutzeler and others, 2014; Kornei, 2019). These examples illustrate the potential hazards of major submarine eruptions. Yet, submarine volcanoes are largely unmonitored, and many eruptions occur that are unnoticed or only identified hours or days afterward. Within U.S. territory, submarine volcanoes in the Northern Mariana Islands have been known to produce eruptive activity that can affect society. Reports from fishermen and other marine vessels in the Northern Mariana Islands have noted underwater explosions, sea-surface discoloration, and bubbling water, all of which are known to be signs of submarine volcanic activity. South Sarigan seamount, located about 160 kilometers (km) north of Saipan, erupted in 2010 from greater than 150 meters below the sea surface, resulting in a gas and ash plume that reached more than 11.9 km into the atmosphere (for example, Searcy, 2013; Embley and others, 2014), high enough to affect international air traffic. Precursory and co-eruptive seismicity was detected on the regional Northern Mariana Islands seismic network (Searcy, 2013) and on global monitoring instruments (Green and others, 2013). Monitoring of submarine volcanoes is best accomplished with marine-based instrumentation, which is also useful for monitoring small island volcanoes that may not have the land area necessary for comprehensive subaerial monitoring. The primary marine-based instrumentation used for submarine volcanoes includes ocean-bottom pressure sensors to assess sea-floor deformation, ocean-bottom seismometers (OBSs) to detect seismicity, and both moored and ocean-bottom hydrophones to detect submarine explosions. Other sensors offer important monitoring data, such as turbidity, temperature, and chemistry of hydrothermal emissions. Marine-based instruments are typically deployed in campaign-style networks with no real-time telemetry owing to cost considerations and technical limitations. However, when necessary, marine instruments can be operated in real time using cables to transmit data to land-based facilities; other technologies for this purpose are in use or in development, such as acoustic transmission from the instrument to a moored buoy (Matsumoto and others, 2016) and a winch-based system with a satellite antenna that is part of the instrument mooring (Matsumoto and others, 2019). Emerging technologies for marine-based monitoring may be considered as part of a future monitoring plan. These technologies include ocean gliders and floats with on-board hydrophones that have been used to record earthquakes and submarine eruptions (for example, Matsumoto and others, 2013; Sukhovich and others, 2015) and fiber-optic cables that have been used as strainmeters to detect earthquakes (for example, Marra and others, 2018; Lindsey and others, 2019). Land-based instruments and satellites can also provide some capability for monitoring submarine volcanoes, but they provide more limited observations than marine-based instrumentation.

Scientific Investigations Report↗

USGS2012

Use of acoustic technology to define hydraulic characteristics of an estuary near the Mississippi Gulf Coast

An Acoustic Doppler Current Profiler (ADCP) was used on the Jourdan River at Interstate Highway 10 near Kiln, Mississippi, in 1996 to measure three-dimensional velocity vectors and water depths and in 1998, in combination with a global positioning system, to define channel bathymetry in the vicinity of the bridge. During a 25-hour period on September 19-20, 1996, 117 consecutive measurements of stage and discharge were obtained throughout a complete tidal cycle. These measurements were obtained during the time of year when headwater flows were minimal, and, therefore, the tidal-affected flow conditions were noticeable. The stage ranged from only 0.7 to 2.8 ft above sea level, but discharge ranged from 3,980 ft 3 /s flowing upstream to 5,580 ft 3 /s flowing downstream. The average discharge during the 25-hour period was only 80 ft 3 /s flowing downstream. By using the ADCP, full downstream flow, bi-directional flow, and full upstream flow conditions were identified. If conventional measurement techniques had been used, the bi-directional flow conditions could not have been detected since flow direction would have been based on what was seen at the water surface. These measurements were used to define the lower range of the stage-storage-volume relation inland of the highway. On June 10, 1998, the ADCP, in combination with a global positional system, was used to define channel bathymetry for the river reach from about 3,500 ft upstream to about 2,500 ft downstream of the bridge. The bathymetry was compared to past soundings obtained in the vicinity of the bridge; as much as 18 ft of total scour was indicated to have occurred at a bridge pier. Copyright ASCE 2004.

Conference Paper↗

USGS1998

Cruise report for a seismic investigation of gas hydrates in the Mississippi Canyon region, northern Gulf of Mexico: Cruise M1-98-GM

During June 1998, the U.S. Geological Survey (USGS) and the University of Mississippi Marine Minerals Technology Center (MMTC) conducted a 12-day cruise in the Mississippi Canyon region of the Gulf of Mexico (Fig. 1). The R/V Tommy Munro, owned by the Marine Research Institute of the University of Southern Mississippi, was chartered for the cruise. The general objective was to acquire very high resolution seismic-reflection data across of the upper and middle continental slope (200-1200-m water depths) to study the acoustic character, distribution and potential effects of gas hydrates within the shallow subsurface, extending from the sea floor down to the base of the gas-hydrate stability zone. The Gulf of Mexico is well known for hydrocarbon resources that include petroleum and related gases. Areas of the Gulf that lie in waters deeper than about 250 m potentially have conditions (e.g., pressure, temperature, near-surface gas content, etc.) that are right for the shallow-subsurface formation of the ice-like substance (gas and water) known as gas hydrate (Kvenvolden, 1993). Gas hydrates have previously been sampled in sea-floor cores and observed as massive mounds in several parts of the northern Gulf, including the Mississippi Canyon region (e.g., Anderson et al., 1992). Extensive seismic data have been recorded in the Gulf, in support of commercial drilling efforts, but few very high resolution data exist in the public domain to aid in gas-hydrate studies. Studies of long-term interest include those on the resource potential of gas hydrates, the geologic hazards associated with dissociation and formation of hydrates, and the impact, if any, of gas-hydrate dissociation on atmospheric warming (i.e., via release of methane, a "greenhouse" gas). Several very high resolution seismic systems (surface-towed, deep-towed, and sea-floor) were used during the cruise to test the feasibility of using such data for detailed structural (geometric) and stratigraphic (physical property) analyses based on the acoustic data. The cruise was conducted in two regions, on opposite flanks of the Mississippi Canyon, where gas hydrates are known and suspected from prior coring and seismic operations (e.g., Neurauter and Bryant, 1989). The regions are also characterized by thick surficial, relatively young (Pleistocene and younger) sediments. Swath-bathymetry data (Fig. 2) show extensive sea-floor faults, piercement features, and slumps—features whose development could potentially be related to gas hydrates. The specific objectives of the cruise were (a) to image the gas-hydrate stability zone across the continental margin to document bottom-simulating reflections (BSRs) and changes in geometry of the hydrate stability zone; (b) to image known hydrate features (with several seismic systems) to estimate physical properties for hydrate and non-hydrate areas; (c) to outline the shallow structures of the hydrate stability zone to ascertain their potential effects on the formation/distribution of hydrates and on stability of the sea floor; and (d) to estimate, if possible, the amounts of hydrates present in the shallow sub surface. During the cruise about 850 km of multichannel and single-channel seismic data were recorded. Seismic measurements at nine ocean-bottom seismometer (OBS) stations were recorded for several of the multichannel tracklines (see Fig. 3 in report). The following report describes the field operations and equipment systems employed, gives two examples of ship-board seismic records, and outlines a few preliminary results.

Open-File Report↗

USGS2023

Bedrock-surface elevation and overburden thickness maps of the five boroughs, New York City, New York

Digital maps of bedrock elevation and overburden thickness (depth to bedrock) were constructed for the five boroughs of New York City by the U.S. Geological Survey, in cooperation with the New York City Department of Design and Construction, from a compilation of historical and newly acquired data. Raster surfaces were interpolated from a point database containing data from more than 14,000 locations collected from a variety of sources. These data were collected between 1905 and 2021. These maps were constructed to supplement existing tools for the evaluation of potential construction of geothermal heat pump technology for buildings in New York City. The bedrock underlying the study area ranges from easily weathered to very resistant to weathering. This differential susceptibility to erosion, along with numerous north-northwest-trending faults, is believed to control the shape of the bedrock surface. Glacial scouring of the bedrock during the Pleistocene Epoch is the most recent control on the topography of bedrock surfaces. Overburden thickness is an important consideration for evaluation and construction of geothermal systems. Bedrock-surface elevation ranges from about 360 feet above sea level (in central Staten Island and northern Bronx) to 1,200 feet below sea level (in southern Queens) (North American Vertical Datum of 1988). The overburden thickness ranges from 0 foot thick at surface outcrops on Staten Island, Manhattan, and the Bronx, to 1,280 feet thick in southeastern Queens.

Data Report↗

USGS2009

Satellite telemetry of marine megavertebrates: The coming of age of an experimental science

Wildlife telemetry research has expanded greatly in the last 2 decades, with the application of satellite tracking and archival logging technologies to study the ecology and conservation of marine mammals, birds, fishes, and turtles. Widespread and expanding use of satellite tracking to study movements and habitats of marine megavertebrates warrants a review of progress to date and a discussion of challenges facing this rapidly evolving research field. To this end, we reviewed the satellite telemetry literature of air-breathing marine taxa (i.e. birds, mammals, turtles) over the 20 yr time period from 1987 to 2006. This review yielded 92 studies with a wide taxonomic representation: 47 seabirds, 23 sea turtles, and 22 marine mammals. Here we critically evaluate these articles to assess progress in satellite tracking of marine megavertebrates in terms of (1) objectives and approach, (2) experimental design, and (3) reporting of results. The overall trends revealed increases in the duration and scope of tracking studies, yet improvements on experimental design and reporting are needed to facilitate comparisons across studies and species. While inherent ecological differences influence the focus and methods of taxon-specific studies, this review highlights specific areas in need of improvement and provides general suggestions for future tracking studies of marine megavertebrates.

Endangered Species Research↗

USGS2001

Seabird tissue archival and monitoring project: Protocol for collecting and banking seabird eggs

Archiving biological and environmental samples for retrospective analysis is a major component of systematic environmental monitoring. The long-term storage of carefully selected, representative samples in an environmental specimen bank is an important complement to the real-time monitoring of the environment. These archived samples permit: The use of subsequently developed innovative analytical technology that was not available at the time the samples were archived, for clear state-of-art identification an~ quantification of analytes of interest, The identification and quantification of analytes that are of subsequent interest but that were not of interest at the time the samples were archived, and The comparison of present and past analytical techniques and values, providing continued credibility of past analytical values, and allowing flexibility in environmental monitoring programs. Seabirds, including albatrosses, pelicans, cormorants, terns, kittiwakes, murres, guillemots, and puffins spend most of their lives at sea and have special adaptations for feeding in the marine environment, including the ability to excrete the excess salt obtained from ingesting seawater. Many species nest in dense groups (colonies) on steep, precipitous sea-cliffs and headlands. Seabirds are long-lived and slow to mature. They occupy high positions in the marine food web and are considered sensitive indicators for the marine environment (prey includes krill, small fish, and squid). Breeding success, timing of nesting, diets, and survival rates may provide early indications of changing environmental conditions (e.g., see Hatch et aI., 1993). Chemical analysis of seabird tissues, including egg contents, can be particularly useful in determining whether contaminants (and potential biological effects) associated with human industrial activities, such as offshore petroleum and mineral exploration and development, are accumulating in marine environments. The collection and archival of seabird tissues over a period of several years will be a resource for future analyses, providing samples that can be used to determine historical baseline contaminant levels.

Report↗

USGS2016

10,000 m under the sea: An overview of the HADES expedition to Kermadec Trench

The hadal zone of the world oceans (6000– 11,000 m) occupies <1% of the marine realm and is found almost exclusively in trenches but represents ~40% of the total ocean depth range. Jamison et al. (2010 & Jamison, 2015) have reviewed the current state of knowledge about the hydrology, physical characteristics, food supply, ecology and biodiversity of life in hadal trenches. This review concluded that, there appears to be a high level of endemism based on the few specimens collected from historical sampling efforts in the 1950s (Danish Galathea and Soviet Vitjaz expeditions), but because trenches are still largely unexplored there is a lot we do not know about the ecological structure and functioning of hadal environments. However, relatively recent advances in technology using remotely operated vehicles (ROV) and landers can help us explore hadal trenches in greater detail.

Conference Paper↗

USGS2019

Global change-driven use of onshore habitat impacts polar bear faecal microbiota

The gut microbiota plays a critical role in host health, yet remains poorly studied in wild species. Polar bears (Ursus maritimus), key indicators of Arctic ecosystem health and environmental change, are currently affected by rapid shifts in habitat that may alter gut homeostasis. Declining sea ice has led to a divide in the southern Beaufort Sea polar bear subpopulation such that an increasing proportion of individuals now inhabit onshore coastal regions during the open-water period (‘onshore bears’) while others continue to exhibit their typical behaviour of remaining on the ice (‘offshore bears’). We propose that bears that have altered their habitat selection in response to climate change will exhibit a distinct gut microbiota diversity and composition, which may ultimately have important consequences for their health. Here, we perform the first assessment of abundance and diversity in the faecal microbiota of wild polar bears using 16S rRNA Illumina technology. We find that bacterial diversity is significantly higher in onshore bears compared to offshore bears. The majority of unique bacterial taxa for onshore bears belonged to the phyla Proteobacteria (a proposed indicator of poor health in adult humans), whereas for offshore bears, Firmicutes (associated with adiposity) dominated. We conclude that climate-driven changes in polar bear land use are associated with distinct microbial communities. In doing so, we present the first case of global change mediated alterations in the gut microbiota of a free-roaming wild animal.

Alaska↗

USGS2019

Estimating the energy expenditure of free‐ranging polar bears using tri‐axial accelerometers: A validation with doubly labeled water

Measures of energy expenditure can be used to inform animal conservation and management, but methods for measuring the energy expenditure of free‐ranging animals have a variety of limitations. Advancements in biologging technologies have enabled the use of dynamic body acceleration derived from accelerometers as a proxy for energy expenditure. Although dynamic body acceleration has been shown to strongly correlate with oxygen consumption in captive animals, it has been validated in only a few studies on free‐ranging animals. Here, we use relationships between oxygen consumption and overall dynamic body acceleration in resting and walking polar bears Ursus maritimus and published values for the costs of swimming in polar bears to estimate the total energy expenditure of 6 free‐ranging polar bears that were primarily using the sea ice of the Beaufort Sea. Energetic models based on accelerometry were compared to models of energy expenditure on the same individuals derived from doubly labeled water methods. Accelerometer‐based estimates of energy expenditure on average predicted total energy expenditure to be 30% less than estimates derived from doubly labeled water. Nevertheless, accelerometer‐based measures of energy expenditure strongly correlated ( r 2 = 0.70) with measures derived from doubly labeled water. Our findings highlight the strengths and limitations in dynamic body acceleration as a measure of total energy expenditure while also further supporting its use as a proxy for instantaneous, detailed energy expenditure in free‐ranging animals.

Alaska, Northwest Territories, Yukon↗

USGS2022

Greenhouse gas balances in coastal ecosystems: Current challenges in “blue carbon” estimation and significance to national greenhouse gas inventories

Coastal wetlands are defined herein as inundated, vegetated ecosystems with hydrology, and biogeochemistry influenced by sea levels, at timescales of tides to millennia. Coastal wetlands are necessary components of global greenhouse gas estimation and scenario modeling, both for continental and oceanic mass balances. The carbon pools and fluxes on coastal lands, especially those influenced by tidal drivers and sea level rise, are distinct in their magnitude, rates, and uncertainties. We describe herein the pathways taken for a US scale estimation of blue carbon based on annual timesteps and bottom-up modeling, as appropriate for the first effort to include coastal wetlands in the Intergovernmental Panel on Climate Change (IPCC) guidelines for a National Greenhouse Gas Inventory (NGGI). As such, we summarize multiple efforts to reconcile mapping, modeling, and measurement issues and we report the assumptions we made based on data availability. Provided as requested feedback to the IPCC. Subsidiary Body for Scientific and Technological Advice (SBSTA) evaluation of guidance criteria, these analyses synergistically point scientists, practitioners, and policy makers toward the greatest uncertainties to address in future assessments: coastal wetland methane emissions and carbon dioxide emissions associated with the fate of eroded soil. This is a story of what was learned in the 2014–2018 NASA Carbon Monitoring System project (https://carbon.nasa.gov/cgi-bin/cms_projects.pl), how it informs “good practice” (IPCC 2006) in reporting coastal wetland emissions and removals, and where it points scientifically toward data needs at different temporal and spatial scales.

Book chapter↗

USGS2023

FishPass baseline assessment of fish community assemblage and migratory patterns in in the Boardman River, Traverse City, Michigan, USA

This report on baseline assessment of fish community assemblage and migratory patterns of fishes in the lower Boardman River (LBR; Traverse City, MI (USA)) is one of four assessment projects conceived circa 2017 after the Boardman (Ottaway) River was selected by the Great Lakes Fishery Commission (GLFC) and collaborating agencies as the future site of the Selective Bi-directional Fish Passage (FishPass) project. This report describes the results from fisheries community sampling from 2017-2021 and the concurrent bio-telemetry project aimed at understanding phenological changes in the fish community and movement and space-use of a variety of large-bodied fishes in the LBR against which selective fish passage treatments will be developed and evaluated. Fish migration in riverine environments is a growing area of concern as mounting anthropogenic influences, particularly fragmentation from dams and barriers, constitute a major threat to global river species diversity. Specifically, In the Laurentian Great Lakes basin, more than 250,000 dams, weirs, culverts, and other significant obstructions prevent the movement of species both between the Great Lakes and rivers, and within rivers. Barriers impede the movement of fishes between areas critical to the completion of their lifecycle, affecting both population and ecosystem viability. However, a conundrum arises in that the same barriers can also prevent the upstream invasion of non-native or undesirable species (most notably the sea lamprey Petromyzon marinus in the Great Lakes),prevent the transfer of contaminants and diseases, halt deleterious genes, provide recreational opportunities, or generate power. As a result, fish passage solutions with the capability of selectively passing desirable taxa while restricting the dispersal of undesirable taxa (selective connectivity) are sought to solve this connectivity conundrum. FishPass is a multi-agency initiative planned to replace the Union Street Dam on the Boardman River in Traverse City,MI (USA), aimed at developing and implementing automatic or semiautomatic selective bi-directional fish guidance, sorting, and passage techniques and technologies. Pivotal to both the successful development of selective connectivity and assessment of its effects is a more complete understanding of the Boardman River’s fishery. Specifically, understanding the species and size composition of the fish community, fish movement phenology and the associated abiotic conditions. Fish community sampling confirmed the presence of 28 unique species in the LBR (Boardman River reach below Union Street Dam). Passive Integrated Transponder (PIT) tag telemetry increased the resolution of phenological shifts in the fish community that could not have been captured from periodic fish sampling. This data demonstrates large variation within species and overlap between species presence. However, discrete periods of presence were identified across most species when considering the central tendencies in the distribution of their presence. Rainbow trout Oncorhynchus mykiss were found to be omni-present in the river while brown trout Salmo trutta and smallmouth bass Micropterus dolomieu also persisted throughout a majority of the year; all of which will require continually sorting at FishPass. PIT tag telemetry also provided the important understanding that individuals (3-64%) of all species return to the LBR across multiple years. Radio telemetry (RT) proved useful in refining the entry and exit timing and in evaluating the proportion of individuals that encountered the current Union Street Dam and Kid’s Creek (the only tributary confluence below the Union Street Dam) across six species (common white sucker Catostomus commersonii, rainbow trout, smallmouth bass, walleye Sander vitreus, brown trout, and common carp Cyprinus carpio). The RT results show that these species are present in FishPass Research Publication: baseline assessment of fish community assemblage and migratory pattern in the Boardman River, Traverse City, Michigan, USA November 2023 7 between April and August. Our analysis also demonstrated that not all fish that entered the river proceeded to the Union Street Dam, but those that did, did so prior to being detected encountering Kid’s Creek. Common white sucker and rainbow trout were the only species to be detected encountering Kid’s Creek. Collectively, the results of this study provide a baseline understanding of the seasonal fish diversity and relative abundance of fishes in the LBR, and a basic description of observed movement patterns of a subset of species in the context of seasonal phenology, entry and exit behavior within the LBR, and the propensity at which telemetered individuals encounter the Union Street dam and/or Kid’s Creek.

Michigan↗

USGS2006

Development of a murre (Uria spp.) egg control material

The Seabird Tissue Archival and Monitoring Project (STAMP) is a collaborative Alaska-wide effort by the US Fish and Wildlife Service's Alaska Maritime National Wildlife Refuge (USFWS/AMNWR), the US Geological Survey's Biological Resources Division (USGS/BRD), the Bureau of Indian Affairs Alaska Region Subsistence Branch (BIA/ARSB), and the National Institute of Standards and Technology (NIST) to monitor long-term (decadal) trends in environmental contaminants using seabird eggs. To support this effort, a matrix- (seabird egg) and concentration-specific control material was needed to ensure quality during analytical work. Although a herring gull egg quality assurance (HGQA) material is available from Environment Canada (EC), contaminant concentrations in this material tended to be higher than those observed in Alaskan murre (Uria spp.) eggs. Therefore, to prepare a more appropriate control material, a total of 12 common murre (U. aalge) and thick-billed murre (U. lomvia) eggs from four Bering Sea and Gulf of Alaska nesting locations were cryohomogenized to create 190 aliquots each containing approximately 6 g. This new control material was analyzed by different methods at NIST and EC facilities for the determination of concentrations and value assignment of 63 polychlorinated biphenyl (PCB) congeners, 20 organochlorine pesticides, and 11 polybrominated diphenyl ether (PBDE) congeners. The total PCB concentration is approximately 58 ng g -1 wet mass. Results obtained for analytes not listed on the certificates of analysis of the previously used control materials, HGQA and NIST's Standard Reference Material (SRM) 1946 Lake Superior Fish Tissue, are also presented. [Figure not available: see fulltext.]. ?? Springer-Verlag 2007.

Conference Paper↗