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Obtaining environmental measures to facilitate vertebrate habitat modeling

Published literature generally lacks habitat information needed to adequately model the habitats of most wildlife species at large scales (>1:100,000). We searched in primary and secondary literature for occurrence of several potentially useful habitat measures for 20 species of interest to the Idaho Department of Fish and Game. We found adequate information for modeling only the habitats of certain game species and species of special interest. We suggest that many more researchers could collect simple habitat information regarding vegetation composition and structure, topographic features, soils, temperature, and distance to special landscape features such that current research expenses would not be increased significantly. We recommend that habitat data be consistently reported in peer-reviewed literature or deposited into a central data repository. This will not only help fill the gaps in our current knowledge of wildlife but also place it in a format that is readily accessible by the scientific community.

Wildlife Society Bulletin

A cellular automata downscaling based 1 km global land use datasets (2010–2100)

Global climate and environmental change studies require detailed land-use and land-cover(LULC) information about the past, present, and future. In this paper, we discuss a methodology for downscaling coarse-resolution (i.e., half-degree) future land use scenarios to finer (i.e., 1 km) resolutions at the global scale using a grid-based spatially explicit cellular automata (CA) model. We account for spatial heterogeneity from topography, climate, soils, and socioeconomic variables. The model uses a global 30 m land cover map (2010) as the base input, a variety of biogeographic and socioeconomic variables, and an empirical analysis to downscale coarse-resolution land use information (specifically urban, crop and pasture). The output of this model offers the most current and finest-scale future LULC dynamics from 2010 to 2100 (with four representative concentration pathway (RCP) scenarios—RCP 2.6, RCP 4.5, RCP 6.0, and RCP 8.5) at a 1 km resolution within a globally consistent framework. The data are freely available for download, and will enable researchers to study the impacts of LULC change at the local scale.

Science Bulletin

Selected papers in the applied computer sciences 1992

This compilation of short papers reports on technical advances in the applied computer sciences. The papers describe computer applications in support of earth science investigations and research. This is the third volume in the series "Selected Papers in the Applied Computer Sciences." Listed below are the topics addressed in the compilation: Integration of geographic information systems and expert systems for resource management, Visualization of topography using digital image processing, Development of a ground-water data base for the southeastern Uited States using a geographic information system, Integration and aggregation of stream-drainage data using a geographic information system, Procedures used in production of digital geologic coverage using compact disc read-only memory (CD-ROM) technology, and Automated methods for producing a technical publication on estimated water use in the United States.

Bulletin

MLAAPDE: A machine learning dataset for determining global earthquake source parameters

The Machine Learning Asset Aggregation of the Preliminary Determination of Epicenters (MLAAPDE) dataset is a labeled waveform archive designed to enable rapid development of machine learning (ML) models used in seismic monitoring operations. MLAAPDE consists of more than 5.1 million recordings of 120 s long three‐component broadband waveform data (raw counts) for P , Pn , Pg , S , Sn , and Sg arrivals. The labeled catalog is collected from the U.S. Geological Survey National Earthquake Information Center’s (NEIC) Preliminary Determination of Epicenters bulletin, which includes local to teleseismic observations for earthquakes ∼ M 2.5 and larger. Each arrival in the labeled dataset has been manually reviewed by NEIC staff. An accompanying Python module enables users to develop customized training datasets, which includes different time‐series lengths, distance ranges, sampling rates, and/or phase lists. MLAAPDE is distinct from other publicly available datasets in containing local (14%), regional (36%), and teleseismic (50%) observations, in which local, regional, and teleseismic distance are 0°–3°, 3°–30°, and 30°+, respectively. A recent version of the dataset is publicly available (see Data and Resources ), and user‐specific versions can be generated locally with the accompanying software. MLAAPDE is an NEIC supported, curated, and periodically updated dataset that can contribute to seismological ML research and development.

Seismological Research Letters

Forensic seismology

Twenty years ago, politicians, concerned a the slow progress of negotiations to stop nuclear weapons testing, described the state of seismology as being in the equivalent of the Stone Age. this assessment spurred the beginning of research and development at the Atomic Weapons Research Establishment near the village of Aldermaston, England. the object was to establish the limits of seismology for the detection and identification of underground explosions against a background of earthquakes. Thereby, verification that there was compliance with a treaty to ban further nuclear tests could be assessed before making political decisions. Negotiations now taking place in Geneva between the Soviet Union, the United States, and the United Kingdom are aimed at such a treaty.

Earthquake Information Bulletin (USGS)

The geologic story of Yosemite National Park

Within 150 years, Yosemite has moved from great obscurity to worldwide fame as one of the most visited of our national parks. As a remarkable place where people can enjoy unparalleled scenes of natural beauty and where many easily observed geologic features are concentrated, the park is rivaled by few other areas on the planet. The majesty and immense variety of these features have inspired artists and photographers, intrigued tourists, and stirred controversy among geologists. Field studies in the Yosemite area have contributed to the development of our ideas about geologic processes, including the different actions of streams and glaciers in the evolution of the landscape, and the formation of granite, the basic bedrock of much of the Earth's continents. The park's role as a natural laboratory for geologic research cannot be overemphasized, and its investigation has led to many landmark studies by U.S. Geological Survey geologists over the past 70 years. In 1913, the first detailed program of research on the geology of the park and the origin ofYosemite Valley was begun by Francois Matthes and Frank Calkins. Their work, along with that of later generations of Survey geologists, myself included, serves as the basis for our present understanding of the geologic history of Yosemite and of the processes that formed and continue to mold its landscape. This book, which makes available in one volume a comprehensive summary of the current geologic knowledge of Yosemite National Park, is an excellent example of the Survey's continuing effort to provide earth-science information in the public service.

California

Geology and natural history of the San Francisco Bay area: A field-trip guidebook

A National Association of Geoscience Teachers Far Western Section (NAGT-FWS) field conference is an ideal forum for learning about the geology and natural history of the San Francisco Bay area. We visit classic field sites, renew old friendships, and make new ones. This collection of papers includes field guides and road logs for all of the Bay-area trips held during the NAGT-FWS 2001 Fall Field Conference and supplemental chapters on other aspects of the area’s natural and human history. The trips touch on many aspects of the geology and natural hazards of the Bay area, especially urban problems associated with living on an active tectonic plate margin: earthquake faults, coastal erosion, landslides, and the utilization of land and natural resources. We hope this conference not only provides a two-day learning opportunity for conference participants but that students and educators will use this field guidebook for future teaching and research. Many thanks are due to the U.S. Geological Survey (USGS) and San José State University (SJSU) for cohosting the conference. We are grateful to each of the field trip leaders for preparing the trips and writing the accompanying guides. We especially appreciate the many hours put in by the guidebook reviewers, Robert I. Tilling (USGS) and Paula Messina (SJSU), and to the USGS Western Publications Group for editing, layout, and web posting. Additional guidebook contributions include articles by John Galloway, Scott Starratt, Page Mosier, and Susan Toussaint. During the conference guest speakers include Robert I. Tilling (USGS Volcano Hazards Team) and Ross Stein (USGS Earthquake Hazards Team). Workshops prepared for the conference include GIS in the classroom, using USGS data by John Vogel (USGS) and Paula Messina (SJSU), and The Best of BAESI (Bay Area Earth Science Institute), a teacher training organization under the direction of Ellen Metzger (SJSU) and Richard Sedlock (SJSU). The conference provides an opportunity to showcase USGS scientific and education resources with self-guided tours of the USGS Library, the Earth Science Information Center (ESIC), the Visitor Center, and various laboratories on the USGS campus and includes a half-day participatory tour of the USGS research vessel the R/V Polaris and the USGS Marine Facility at the Port of Redwood City under the direction of Cynthia L. Brown, Francis Parchaso, and Tara Schraga. Beyond the names mentioned above, a host of USGS and SJSU staff, SJSU students, and NAGT-FWS members contributed to the preparation and orchestration of the conference. We couldn’t have done it alone. Leslie C. Gordon (USGS), Philip W. Stoffer (USGS), and Deborah Harden (SJSU) NAGT-FWS 2001 Fall Field Conference Organizers.

California

Working toward a National Coordinated Soil Moisture Monitoring Network: Vision, progress, and future directions

Soil moisture is a critical land surface variable, impacting the water, energy, and carbon cycles. While in situ soil moisture monitoring networks are still developing, there is no cohesive strategy or framework to coordinate, integrate, or disseminate these diverse data sources in a synergistic way that can improve our ability to understand climate variability at the national, state, and local levels. Thus, a national strategy is needed to guide network deployment, sustainable network operation, data integration and dissemination, and user-focused product development. The National Coordinated Soil Moisture Monitoring Network (NCSMMN) is a federally led, multi-institution effort that aims to address these needs by capitalizing on existing wide-ranging soil moisture monitoring activities, increasing the utility of observational data, and supporting their strategic application to the full range of decision-making needs. The goals of the NCSMMN are to 1) establish a national “network of networks” that effectively demonstrates data integration and operational coordination of diverse in situ networks; 2) build a community of practice around soil moisture measurement, interpretation, and application—a “network of people” that links data providers, researchers, and the public; and 3) support research and development (R&D) on techniques to merge in situ soil moisture data with remotely sensed and modeled hydrologic data to create user-friendly soil moisture maps and associated tools. The overarching mission of the NCSMMN is to provide coordinated high-quality, nationwide soil moisture information for the public good by supporting applications like drought and flood monitoring, water resource management, agricultural and forestry planning, and fire danger ratings.

Bulletin of the American Meteorological Society

Barcodes are a useful tool for labeling and tracking ecological samples

Barcodes are used to label and track just about everything these days. Look around your office, in your medicine cabinet, at the package you just received in the mail, or on the shelves of any shop in town, and you will immediately grasp the ubiquity of their use. Interestingly, railroads and supermarkets were the early pioneers of barcode development: the former needing a way to track railway car location and ownership on a national scale, the latter needing a way to track a diverse array of products and to decrease checkout times (Nelson 1997). Barcodes first came to use in the sciences via the field of medicine, and the medical literature contains hundreds of publications describing how this technology has reduced errors in patient specimen identification and handling, where error mitigation is crucial. In short, barcodes have been adopted by many industries, and in many fields they are now synonymous with asset tracking. In spite of their potential to efficiently organize “assets” (i.e., samples) and minimize human error, the use of barcodes has yet to gain widespread application in ecology. In an age where students take notes on laptops instead of paper, and where “text messaging” involves a smartphone rather than a ball‐point pen, why do otherwise tech‐savvy ecologists persist in hand‐labeling samples? Why do we repeatedly transcribe long and unique identifiers at each step in the process of sample analysis, thereby wasting time and creating opportunities for transcription errors and data loss? Why are most sample storage areas only successfully navigable by the lab manager who personally shelved the samples? In the case of our large ecology lab—and, we suspect, in many others as well—the answer to these questions was perpetually, “bar‐coding won't be worth the trouble.” Recently, however, we realized this was no longer a sufficient answer when we started a new research project that involved collecting an additional thousands of samples each year; we decided to embrace the tangible benefits of an electronic labeling system, and implemented barcoding in our lab. To be clear, the use of barcoding in ecology is not completely novel, and there have been early adopters of this technology. For example, the Cedar Creek Long Term Ecological Research (LTER) site has been using barcodes since at least the mid‐1990s to track the large number of samples collected in their long‐term experimental grasslands (T. A. Kennedy, personal observation ). Overall, however, Cedar Creek is an outlier: in informal e‐mail surveys of LTER sites, only two of eight respondents used barcodes for sample identification or tracking, and even then their use was generally limited to certain samples or certain stages of sample analysis. Our objective in this article is to use our lab as a case study to highlight the potential of barcodes to simplify numerous aspects of sample collection and processing.

Arizona

The Hawaiian Volcanoes Supersite: Open data for the benefit of science and society

The Hawaiian Volcanoes Supersite was established in 2008 with the goal of making large amounts of volcano monitoring data, especially satellite measurements, freely available at a site of international interest, scientific importance, and impactful natural hazards. The location was chosen because of the long history of volcanological research and innovation on the Island of Hawaiʻi, as well as the need for monitoring, assessing, and mitigating volcanic hazards for the local population. Ground-based data are provided by the U.S. Geological Survey Hawaiian Volcano Observatory, and several national space agencies have contributed thousands of satellite synthetic aperture radar and other data that would have otherwise required special grants or commercial purchase. Since the Hawaiian Volcanoes Supersite was initiated, the vast quantity of open space-based data has resulted in the development of new applications and methodologies, successful responses to volcanic crises, and research that has informed monitoring and hazards mitigation activities. While there remain opportunities for additional coordination among supersite users and for synergistic studies that make use of the full spectrum of available ground- and space-based data, the Hawaiian Volcanoes Supersite has achieved its goals of stimulating basic research to better understand Hawaiian volcanism and aiding in responses to hazardous geologic processes. The effort serves as a model for the benefits of open, low-latency, and comprehensive satellite data applied to disaster risk management and reduction, meeting a vision that has been laid out repeatedly in international agreements and accords.

Hawaii

Methods for geochemical analysis

The laboratories for analytical chemistry within the Geologic Division of the U.S. Geological Survey are administered by the Office of Mineral Resources. The laboratory analysts provide analytical support to those programs of the Geologic Division that require chemical information and conduct basic research in analytical and geochemical areas vital to the furtherance of Division program goals. Laboratories for research and geochemical analysis are maintained at the three major centers in Reston, Virginia, Denver, Colorado, and Menlo Park, California. The Division has an expertise in a broad spectrum of analytical techniques, and the analytical research is designed to advance the state of the art of existing techniques and to develop new methods of analysis in response to special problems in geochemical analysis. The geochemical research and analytical results are applied to the solution of fundamental geochemical problems relating to the origin of mineral deposits and fossil fuels, as well as to studies relating to the distribution of elements in varied geologic systems, the mechanisms by which they are transported, and their impact on the environment.

Bulletin

Resetting the bar: Establishing baselines for persistent contaminants after Hurricane Sandy in the coastal environments of New Jersey and New York, USA

In the immediate aftermath of natural disasters, public health officials and other first responders engage in many activities to protect the public and ecosystems in the affected area. These activities include critical tasks designed to minimize adverse consequences resulting from chemical and microbial contaminant exposures, such as acute disease incidence and transmission. However, once these urgent priorities have been met and situations requiring immediate attention have been stabilized, questions regarding the potential longer term threats to humans and ecosystems associated with persistent contaminant exposures remain. Research conducted to address these questions is frequently challenged by the lack of available baseline contaminant information collected before the event for comparison and perspective. In addition, deployments of field crews and collection of environmental samples typically occur days, weeks, or months after the event. Consequently, during and in the aftermath of disasters, public health agencies commonly advise the public to disinfect water, avoid contact with disturbed infrastructure (such as sewer lines), and (or) refrain from use of recreational waters, with the general focus on acute health threats; however, the persisting effects of such releases on local recreational waters, fisheries, and other estuarine habitats are often undetermined.

New Jersey, New York

The Survey’s first venture into seismology

The occurrence of two small but widely felt earthquakes in the Eastern United States in 1884 led an editor of the research journal Science to suggest, in the October 3 issue of the magazine, that an "earthquake club" be formed. Its purpose was so that observers and students of "this branch of physical geography" could become acquainted with each other and thus insure the proper collection and collation of their observations. Because this was its intent, he though the club should be "unembarrassed by formal regulations"; consequently, there is no record of whether such an organziation ever existed. But the other suggestion, thata of collecting earthquake records was acted on promptly.

Earthquake Information Bulletin (USGS)

Guide for interpreting and reporting luminescence dating results

The development and application of luminescence dating and dosimetry techniques have grown exponentially in the last several decades. Luminescence methods provide age control for a broad range of geological and archaeological contexts and can characterize mineral and glass properties linked to geologic origin, Earth-surface processes, and past exposure to light, heat, and ionizing radiation. The applicable age range for luminescence methods spans the last 500,000 years or more, which covers the period of modern human evolution, and provides context for rates and magnitudes of geological processes, hazards, and climate change. Given the growth in applications and publications of luminescence data, there is a need for unified, community-driven guidance regarding the publication and interpretation of luminescence results. This paper presents a guide to the essential information necessary for publishing and archiving luminescence ages as well as supporting data that is transportable and expandable for different research objectives and publication outlets. We outline the information needed for the interpretation of luminescence data sets, including data associated with equivalent dose, dose rate, age models, and stratigraphic context. A brief review of the fundamentals of luminescence techniques and applications, including guidance on sample collection and insight into laboratory processing and analysis steps, is presented to provide context for publishing and data archiving.

GSA Bulletin

Earthquake alarm; operating the seismograph station at the University of California, Berkeley.

An alarm bell rings at the seismographic station and at the office of the campus police. It is 3:00 on a foggy San Francisco morning. Somewhere in the world an earthquake has occurred. The police telephone the duty seismologist at home telling him that the alarm has triggered. He makes his way into the seismograph station, bathrobe and all, to locate the earthquake and determine its magnitude. In this way, many seismology graduate students have been initiated into the responsibilities of running a seismographic station. At the University of California seismographic stations, the task of locating and determining magnitudes for both local and distant earthquakes is a continuous one. Teleseisms must be located rapidly so that events that occur in the Pacific can be identified and the Pacific Tsunami Warning System alerted. For great earthquakes anywhere, there is a responsibility to notify public agencies such as the California Office of Emergency Services, the Federal Disaster Assistance Administration, the Earthquake Engineering Research Institute, the California Seismic Safety Commission, and the American Red Cross. In the case of damaging local earthquakes, it is necessary to alert also the California Department of Water Resources, California Division of Mines and Geology, U.S Army Corps of Engineers, Federal Bureau of Reclamation, and the Bay Area Rapid Transit. These days, any earthquakes that are felt in northern California cause immediate inquiries from the news media and an interested public. The series of earthquakes that jolted the Livermore area from January 24 to 26 1980, is a good case in point.

Earthquake Information Bulletin (USGS)

Using science-policy integration to improve ecosystem science and inform decision-making: Lessons from U.S. LTERs

This Special Session took place on 12 August 2015 at the 100th Meeting of the Ecological Society of America in Baltimore, Maryland, and was conceived of and coordinated by the Science Policy Exchange. The Science Policy Exchange (SPE) is a boundary- spanning organization established to work at the interface of science and policy to confront pressing environmental challenges . SPE was created as a collaborative of six research institutions to increase the impact of science on environmental decisions. This session was organized by Marissa Weiss and co- organized by Pamela Templer, Kathleen Fallon Lambert, Jill Baron, Charles Driscoll, and David Foster. Along the theme of ESA ’ s Centennial meeting, the group of presenters represented collectively more than 100 years of experience in integration of science, policy, and outreach.

Bulletin of the Ecological Society of America

Conservation of North American rallids

The Rallidae are a diverse group in their habitat selection, yet most North American species occur in or near wetlands As a consequence, most species are subject to habitat enhancement or perturbation from waterfowl management programs. The overall effects of these management programs relative to rallid conservation have been assessed for few species, and there is a need for synthesis of such information. In the cases of some species or raves, population status is not known, and suggested directions for conservation and management are needed. Rare, endangered, or status undetermined species or races often occur in areas where related species are classified as game birds, and the effects of such hunting on rarer forms are not known. Their generally secretive nature, the endangered status of several races and populations, and continued loss of habitat and threats to present habitat, warrant an examination of the conservation status of the North American taxa in this group. In 1977, a committee of the International Association of Fish and Wildlife Agencies summarized available information on management and biology of American Coots ( Fulica americana ), rails, and gallinules in North America (Holliman 1977). That summary was intended to provide relatively complete information on conservation of these species, and also to provide guidance for research within the U.S. Fish and Wildlife Service's (FWS) Accelerated Research Program for Webless Migratory Shore and Upland Game Birds (ARP). Subsequently, a number of rallid studies were funded under this program. The program was eliminated in 1982, following substantial research activities on North American rallids. Since the demise of the ARP, additional research on rallids in North America has focused on an area the International Association of Fish and Wildlife Agencies report failed to cover in detail--that of endangered rallids in the U.S. and their possessions. Most of these studies have been of threatened and endangered taxa in western coastal marshes. This report updates and summarizes information on North American rallids since the ARP report and identifies the major conservation problems of this group with the intent of focusing future efforts on these priority issues. Consideration of island forms occurring within U.S. possessions is beyond the scope of this report, mainly because of the special conservation problems associated with their insular distribution. The major topics include habitat requirements, effects of habitat and hunting management techniques currently practiced on wetland areas, and conservation of endangered and threatened populations. Research needs are identified. Habitats of the American Coot are similar to those of several waterfowl species, and the biology of coots is considered only as it is typical of rails in general.

The Wilson Bulletin

Managing biological diversity

Biological diversity is the variety of life and accompanying ecological processes (Off. Technol. Assess. 1987, Wilcove and Samson 1987, Keystone 1991). Conservation of biological diversity is a major environmental issue (Wilson 1988, Counc. Environ. Quality 1991). The health and future of the earth's ecological systems (Lubchenco et al. 1991), global climate change (Botkin 1990), and an ever-increasing rate in loss of species, communities, and ecological systems (Myers 1990) are among issues drawing biological diversity to the mainstream of conservation worldwide (Int. Union Conserv. Nat. and Nat. Resour. [IUCN] et al. 1991). The legal mandate for conserving biological diversity is now in place (Carlson 1988, Doremus 1991). More than 19 federal laws govern the use of biological resources in the United States (Rein 1991). The proposed National Biological Diversity Conservation and Environmental Research Act (H.R. 585 and S.58) notes the need for a national biological diversity policy, would create a national center for biological diversity research, and recommends a federal interagency strategy for ecosystem conservation. There are, however, hard choices ahead for the conservation of biological diversity, and biologists are grappling with how to set priorities in research and management (Roberts 1988). We sense disillusion among field biologists and managers relative to how to operationally approach the seemingly overwhelming charge of conserving biological diversity. Biologists also need to respond to critics like Hunt (1991) who suggest a tree farm has more biological diversity than an equal area of old-growth forest. At present, science has played only a minor role in the conservation of biological diversity (Weston 1992) with no unified approach available to evaluate strategies and programs that address the quality and quantity of biological diversity (Murphy 1990, Erwin 1992). Although actions to conserve biological diversity need to be clearly defined by viewing issues across biological, spatial, and temporal scales (Knopf and Smith 1992), natural resource managers find much conflicting information in the literature on strategies and programs for the conservation of biological diversity (Ehrlich 1992). Moreover, recommendations provided in much of the published information available for planning or decisions not only can be debated but may prove counterproductive if implemented. Current operational efforts beg for clearer focus on fundamental concepts central to daily decisions that impact native biological diversity. Recognizing that many biologists would provide different council and at the risk of oversimplification, we offer the following 4 topical issues as fundamental guidance to wise conservation action. These recommendations are based on our collective experiences working within conservation agencies since our original, collaborative essay (Samson and Knopf 1982). They are offered as initial, rather than authoritative, steps to better align research and management decisions with what we perceive as the critical issues in conserving biological diversity at the landscape and ecosystem levels of resolution.

Wildlife Society Bulletin