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The polar bear management agreement for the southern Beaufort Sea: An evaluation of the first ten years of a unique conservation agreement

Polar bears ( Ursus maritimus ) of the southern Beaufort Sea population, distributed from approximately Icy Cape, west of Point Barrow, to Pearce Point, east of Paulatuk in Canada, are harvested by hunters from both countries. In Canada, quotas to control polar bear hunting have been in place, with periodic modifications, since 1968. In Alaska, passage of the United State Marine Mammal Protection Act (MMPA) of 1972 banned polar bear hunting unless done by Alaska Natives for subsistence. However, the MMPA placed no restrictions on numbers or composition of the subsistence hunt, leaving open the potential for an overharvest with no possible legal management response until the population was declared depleted. Recognizing that as a threat to the conservation of the shared polar bear population, the Inuvialuit Game Council from Canada and the North Slop Borough from Alaska negotiated and signed a user-to-user agreement, the Polar Bear Management Agreement for the Southern Beaufort Sea, in 1988. We reviewed the functioning of the agreement through its first 10 years and concluded that, overall, it has been successful because both the total harvest and the proportion of females in the harvest have been contained within sustainable limits. However, harvest monitoring needs to be improved in Alaska, and awareness of the need to prevent overharvest of females needs to be increased in both countries. This agreement is a useful model for other user-to-user conservation agreements.

Beaufort Sea

Ecotoxicology of Amphibians and Reptiles

For many years, ecological research on amphibians and reptiles has lagged behind that of other vertebrates such as fishes, birds, and mammals, despite the known importance of these animals in their environments. The lack of study has been particularly acute in the he area of ecotoxicology where the number of published scientific papers is a fraction of that found for the other vertebrate classes. Recently, scientists have become aware of severe crises among amphibian populations, including unexplained and sudden extinctions, worldwide declines, and hideous malformations. In many of these instances, contaminants have been listed as probable contributors. Data on the effects of contaminants on reptiles are so depauperate that even the most elementary interpretations are difficult. This state-of-the-science review and synthesis of amphibian and reptile ecotoxicology demonstrates the inter-relationships among distribution, ecology, physiology, and contaminant exposure, and interprets these topics as they pertain to comparative toxicity, population declines, malformations, and risk assessment . In this way, the book identifies and serves as a basis for the most pressing research needs in the coming years. The editors have invited 27 other internationally respected experts to examine the state of existing data in specific areas, interpret it in light of current problems, and identify research gaps and needs. Through its emphasis on recent research, extensive reviews and synthesis, Ecotoxicology of Amphibians and Reptiles will remain a definitive reference work well into the new century.

SETAC Technical Publications Series.

Historic and current use of Lower Cook Inlet, Alaska, by Belugas, Delphinapterus leucas

Dedicated at-sea surveys for marine birds and mammals conducted in lower Cook Inlet in late July and early August from 1995–99 failed to locate any belugas, Delphinapterus leucas . Surveys covered a total of 6,249 linear km and were conducted in both nearshore and offshore habitats. Sightings included 791 individual marine mammals of 10 species. Both historical data and local knowledge indicate that belugas were regularly seen in summer in nearshore and offshore areas of lower Cook Inlet up until the early 1990’s. Diminished presence of belugas in lower Cook Inlet may be a direct function of reduced numbers but may also indicate changes in habitat quality that may inhibit recovery.

Alaska

Comparative demography of sea otter populations

Population trends are poorly documented and demographic information is typically lacking for many carnivorous mammals. The sea otter ( Enhydru lutris ) has a well known history of decline and recovery, and while many other species have declined as precipitously, few have recovered so spectacularly. Generally speaking, northern populations (remnants within the range of E. l. lutris and E. l. kenyoni ) have recovered at high rates while recovery of the southern sea olter ( E. I. nereis ), which is listed as legally threatened under the Endangered Species Act (ESA), has progressed more slowly. Our purpose is to contrast trends in abundance and demographic patterns between Southern California and northern (Washington, British Columbia, Alaska, and Asia) sea otter populations. Specifically, we provide (1) a brief review of the main findings to date: (2) a summary of ongoing and planned studies; and (3) recommendations for future research. A more detailed account of these and other issues concerning the conservation and management of sea otters is provided in the U.S. Fish and Wildlife Service's Recovery Plan for the Califomia Sea Otter (U.S. Fish and Wildlife Service 1996).

Endangered Species UPDATE

Permafrost thaw in northern peatlands: Rapid changes in ecosystem and landscape functions

Peatlands within the northern permafrost region cover approximately 2 million km 2 and are characterized by organic soils that can be several meters thick, and a fine-scale mosaic of permafrost and non-permafrost landforms interspersed by shallow ponds and lakes. Ongoing permafrost thaw is transforming these peatlands, causing abrupt changes to their morphology, hydrology, ecology, and biogeochemistry. In this review we show how changes to individual peatlands depend on both their Holocene developmental history and their location within current permafrost zones. Permafrost thaw in peatlands often leads to land surface collapse between 0.5 and 5 m, the so-called thermokarst. Thermokarst in peatlands can lead to the development of ice-wedge troughs, waterlogged thermokarst bogs and fens, and the initiation, expansion, and drainage of thermokarst lakes. Permafrost thaw in peatlands can thus completely alter vegetation composition and shift patterns of landscape inundation and hydrological connectivity. These changes in turn have implications for magnitude and timing of runoff, downstream water quality, habitat suitability for birds and larger mammals, traditional land-use, and the exchange of greenhouse gases with the atmosphere. Ongoing permafrost thaw is largely irreversible at relevant human time-scales, and peatland thermokarst has been accelerating over the last few decades. Complete permafrost loss is expected this century for peatlands in relatively warmer permafrost zones, and all peatlands in the northern permafrost region will be profoundly transformed by permafrost thaw.

Book chapter

Exploring and mitigating plague for One Health purposes

Purpose of Review In 2020, the Appropriations Committee for the U.S. House of Representatives directed the CDC to develop a national One Health framework to combat zoonotic diseases, including sylvatic plague, which is caused by the flea-borne bacterium Yersinia pestis . This review builds upon that multisectoral objective. We aim to increase awareness of Y. pestis and to highlight examples of plague mitigation for One Health purposes (i.e., to achieve optimal health outcomes for people, animals, plants, and their shared environment). We draw primarily upon examples from the USA, but also discuss research from Madagascar and Uganda where relevant, as Y. pestis has emerged as a zoonotic threat in those foci. Recent Findings Historically, the bulk of plague research has been directed at the disease in humans. This is not surprising, given that Y. pestis is a scourge of human history. Nevertheless, the ecology of Y. pestis is inextricably linked to other mammals and fleas under natural conditions. Accumulating evidence demonstrates Y. pestis is an unrelenting threat to multiple ecosystems, where the bacterium is capable of significantly reducing native species abundance and diversity while altering competitive and trophic relationships, food web connections, and nutrient cycles. In doing so, Y. pestis transforms ecosystems, causing “shifting baselines syndrome” in humans, where there is a gradual shift in the accepted norms for the condition of the natural environment. Eradication of Y. pestis in nature is difficult to impossible, but effective mitigation is achievable; we discuss flea vector control and One Health implications in this context. Summary There is an acute need to rapidly expand research on Y. pestis , across multiple host and flea species and varied ecosystems of the Western US and abroad, for human and environmental health purposes. The fate of many wildlife species hangs in the balance, and the implications for humans are profound in some regions. Collaborative multisectoral research is needed to define the scope of the problem in each epidemiological context and to identify, refine, and implement appropriate and effective mitigation practices.

Current Tropical Medicine Reports

Vascular Plant and Vertebrate Inventory of Organ Pipe Cactus National Monument

Executive Summary We summarized inventory and monitoring efforts for plants and vertebrates at Organ Pipe Cactus National Monument (NM) in Arizona. We used data from previous research to compile complete species lists for the monument and to assess inventory completeness. There have been 1,031 species of plants and vertebrates observed at the monument. Most of the species on the list are documented by voucher specimens. There are 59 non-native species established in the monument: one mammal, three birds, and 55 non-native plants. Most non-native plant species were first recorded along roads. In each taxon-specific chapter, we highlight areas that contribute disproportionately to species richness or that have unique species for the monument. Of particular importance are Quitobaquito Springs and Pond, which are responsible for the monument having one of the highest number of bird species in the Sonoran Desert Network of parks. Quitobaquito also contains the only fish in the monument, the endangered Quitobaquito pupfish (Cyprinodon eremus). Other important resources for the plants and vertebrates include the xeroriparian washes (e.g., Alamo Canyon) and the Ajo Mountains. Based on the review of past studies, we believe the inventories of vascular plants and vertebrates are nearly complete and that the monument has one of the most complete inventories of any unit in the Sonoran Desert Network.

Open-File Report

Are diseases increasing in the ocean?

Many factors (climate warming, pollution, harvesting, introduced species) can contribute to disease outbreaks in marine life. Concomitant increases in each of these makes it difficult to attribute recent changes in disease occurrence or severity to any one factor. For example, the increase in disease of Caribbean coral is postulated to be a result of climate change and introduction of terrestrial pathogens. Indirect evidence exists that ( a ) warming increased disease in turtles; ( b ) protection, pollution, and terrestrial pathogens increased mammal disease; ( c ) aquaculture increased disease in mollusks; and ( d ) release from overfished predators increased sea urchin disease. In contrast, fishing and pollution may have reduced disease in fishes. In other taxa (e.g., sea grasses, crustaceans, sharks), there is little evidence that disease has changed over time. The diversity of patterns suggests there are many ways that environmental change can interact with disease in the ocean.

Annual Review of Ecology, Evolution, and Systemati

Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny

Background Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat ( Lasiurus cinereus ) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats to wind turbine strikes, our understanding of hoary bat ecology, physiology, and behavior remains poor. Methods To better understand adaptive evolution in this lineage, we used whole-genome sequencing to identify protein-coding sequence and explore signatures of positive selection. Gene models were predicted with Maker and compared to seven well-annotated and phylogenetically representative species. Evolutionary rate analysis was performed with PAML. Results Of 9,447 single-copy orthologous groups that met evaluation criteria, 150 genes had a significant excess of nonsynonymous substitutions along the L. cinereus branch ( P < 0.001 after manual review of alignments). Selected genes as a group had biased expression, most strongly in thymus tissue. We identified 23 selected genes with reported immune functions as well as a divergent paralog of Steep1 within suborder Yangochiroptera. Seventeen genes had roles in lipid and glucose metabolic pathways, partially overlapping with 15 mitochondrion-associated genes; these adaptations may reflect the metabolic challenges of hibernation, long-distance migration, and seasonal variation in prey abundance. The genomic distribution of positively selected genes differed significantly from background expectation by discrete Kolmogorov–Smirnov test ( P < 0.001). Remarkably, the top three physical clusters all coincided with islands of conserved synteny predating Mammalia, the largest of which shares synteny with the human cat-eye critical region (CECR) on 22q11. This observation coupled with the expansion of a novel Tbx1 -like gene family may indicate evolutionary innovation during pharyngeal arch development: both the CECR and Tbx1 cause dosage-dependent congenital abnormalities in thymus, heart, and head, and craniodysmorphy is associated with human orthologs of other positively selected genes as well.

PeerJ

Assessment and management of dead-wood habitat

The Bureau of Land Management (BLM) is in the process of revising its resource management plans for six districts in western and southern Oregon as the result of the settlement of a lawsuit brought by the American Forest Resource Council. A range of management alternatives is being considered and evaluated including at least one that will minimize reserves on O&C lands. In order to develop the bases for evaluating management alternatives, the agency needs to derive a reasonable range of objectives for key issues and resources. Dead-wood habitat for wildlife has been identified as a key resource for which decision-making tools and techniques need to be refined and clarified. Under the Northwest Forest Plan, reserves were to play an important role in providing habitat for species associated with dead wood (U.S. Department of Agriculture Forest Service and U.S. Department of the Interior Bureau of Land Management, 1994). Thus, the BLM needs to: 1) address the question of how dead wood will be provided if reserves are not included as a management strategy in the revised Resource Management Plan, and 2) be able to evaluate the effects of alternative land management approaches. Dead wood has become an increasingly important conservation issue in managed forests, as awareness of its function in providing wildlife habitat and in basic ecological processes has dramatically increased over the last several decades (Laudenslayer et al., 2002). A major concern of forest managers is providing dead wood habitat for terrestrial wildlife. Wildlife in Pacific Northwest forests have evolved with disturbances that create large amounts of dead wood; so, it is not surprising that many species are closely associated with standing (snags) or down, dead wood. In general, the occurrence or abundance of one-quarter to one-third of forest-dwelling vertebrate wildlife species, is strongly associated with availability of suitable dead-wood habitat (Bunnell et al., 1999; Rose et al., 2001). In Oregon and Washington, approximately 150 species of wildlife are reported to use dead wood in forests (O’Neil et al., 2001). Forty-seven sensitive and special-status species are associated with dead wood (Appendix A). These are key species for management consideration because concern over small or declining populations is often related to loss of suitable dead-wood habitat (Marshall et al., 1996). Primary excavators (woodpeckers) also are often the focus of dead-wood management, because they perform keystone functions in forest ecosystems by creating cavities for secondary cavity-nesters (Martin and Eadie, 1999; Aubry and Raley, 2002). A diverse guild of secondary cavity-users (including swallows, bluebirds, several species of ducks and owls, ash-throated flycatcher, flying squirrel, bats, and many other species) is unable to excavate dead wood, and therefore relies on cavities created by woodpeckers for nesting sites. Suitable nest cavities are essential for reproduction, and their availability limits population size (Newton, 1994). Thus, populations of secondary cavity-nesters are tightly linked to the habitat requirements of primary excavators. Although managers often focus on decaying wood as habitat for wildlife, the integral role dead wood plays in ecological processes is an equally important consideration for management. Rose et al. (2001) provide a thorough review of the ecological functions of dead wood in Pacific Northwest forests, briefly summarized here. Decaying wood functions in: soil development and productivity, nutrient cycling, nitrogen fixation, and carbon storage. From ridge tops, to headwater streams, to estuaries and coastal marine ecosystems, decaying wood is fundamental to diverse terrestrial and aquatic food webs. Wildlife species that use dead wood for cover or feeding are linked to these ecosystem processes through a broad array of functional roles, including facilitation of decay and trophic interactions with other organisms (Marcot, 2002; Marcot, 2003). For example, by puncturing bark and fragmenting sapwood, woodpeckers create sites favorable for wood-decaying organisms (Farris et al., 2004), which in turn create habitat for other species and facilitate nutrient cycling. Small mammals that use down wood for cover function in the dispersal of plant seeds and fungal spores (Carey et al., 1999). Resident cavitynesting birds may regulate insect populations by preying on overwintering arthropods (Jackson, 1979; Kroll and Fleet, 1979). These examples illustrate how dead wood not only directly provides habitat for a large number of wildlife species, but also forms the foundation of functional webs that critically influence forest ecosystems (Marcot, 2002; Marcot, 2003). The important and far-reaching implications of management of decaying wood highlight the need for conservation of dead-wood resources in managed forests. Consideration of the key ecological functions of species associated with dead wood can help guide management of dead wood in a framework consistent with the paradigm of ecosystem management (Marcot and Vander Heyden, 2001; Marcot, 2002.) As more information is revealed about the ecological and habitat values of decaying wood, concern has increased over a reduction in the current amounts of dead wood relative to historic levels (Ohmann and Waddell, 2002). Past management practices have tended to severely reduce amounts of dead wood throughout all stages of forest development (Hansen et al., 1991). The large amounts of legacy wood that characterize young post-disturbance forests are not realized in managed stands, because most of the wood volume is removed at harvest for economic and safety reasons. Mid-rotation thinning is used to “salvage” some mortality that might otherwise occur due to suppression, so fewer snags are recruited in mid-seral stages. Harvest rotations of 80 years or less truncate tree size in managed stands, and thus limit the production of large-diameter wood. As a consequence of these practices, dead wood has been reduced by as much as 90% after two rotations of managed Douglas-fir (Rose et al., 2001). Large legacy deadwood is becoming a scarce, critical habitat that will take decades to centuries to replace. Furthermore, management continues to have important direct and indirect effects on the amount and distribution of dead wood in forests. Current guidelines for managing dead wood may be inadequate to maintain habitat for all associated species because they largely focus on a single use of dead wood (nesting habitat) by a small suite of species (cavity-nesting birds), and may under represent the sizes and amounts of dead wood used by many wildlife species (Rose et al., 2001, Wilhere, 2003).

Open-File Report

Diet analysis using generalized linear models derived from foraging processes using R package mvtweedie

Diet analysis integrates a wide variety of visual, chemical, and biological identification of prey. Samples are often treated as compositional data, where each prey is analyzed as a continuous percentage of the total. However, analyzing compositional data results in analytical challenges, for example, highly parameterized models or prior transformation of data. Here, we present a novel approximation involving a Tweedie generalized linear model (GLM). We first review how this approximation emerges from considering predator foraging as a thinned and marked point process (with marks representing prey species and individual prey size). This derivation can motivate future theoretical and applied developments. We then provide a practical tutorial for the Tweedie GLM using new package mvtweedie that extends capabilities of widely used packages in R ( mgcv and ggplot2 ) by transforming output to calculate prey compositions. We demonstrate this approach and software using two examples. Tufted Puffins ( Fratercula cirrhata ) provisioning their chicks on a colony in the northern Gulf of Alaska show decadal prey switching among sand lance and prowfish (1980–2000) and then Pacific herring and capelin (2000–2020), while wolves ( Canis lupus ligoni ) in southeast Alaska forage on mountain goats and marmots in northern uplands and marine mammals in seaward island coastlines.

Ecology

A synthesis of thresholds for focal species along the U.S. Atlantic and Gulf Coasts: A review of research and applications

The impacts from climate change are increasing the possibility of vulnerable coastal species and habitats crossing critical thresholds that could spur rapid and possibly irreversible changes. For species of high conservation concern, improved knowledge of quantitative thresholds could greatly improve management. To meet this need, we synthesized information pertaining to biological responses as tipping points to sea level rise (SLR) and coastal storms for 45 fish, wildlife, and plant species along the U.S. Atlantic and Gulf Coasts and Caribbean through a literature review and expert elicitation. Although these species were selected based on their ecological, economic, and cultural importance, just over half (56%, n = 25) have quantitative threshold data currently available that can be used to assess the effects of SLR and storms during some aspect of their life history. Birds, reptiles, and plants represent the best studied coastal species. Thirteen of the species (29%) are projected to lose at least 50% of their population or habitat (e.g., foraging, nesting, spawning, or resting habitat) in some areas with a 0.5 m or greater rise in sea levels by 2100. Two species (a bird and reptile) may gain habitat from projected SLR and be resilient to future impacts. Numeric thresholds were not available for the remaining 20 species we searched for. Coastal fishes, mammals, and amphibians were among the groups representing a major information gap in this field of research. In addition, quantitative threshold responses to coastal storms were scarce for all taxa. While vulnerability assessments and qualitative research related to the impacts of SLR and storms on coastal species and habitats are increasing, work that incorporates quantitative thresholds as response and impact metrics remains limited. Additional monitoring, modeling, and research that provides multiple quantitative thresholds across species' life stages and/or latitudinal gradients is ideal to support robust coastal management and decision-making across spatio-temporal scales in the face of climate change.

Ocean and Coastal Management

Fire in the Cape Region of South Africa

South Africa's mediterranean-type climate (MTC) region is the smallest of the five MTC regions, centered in the southwestern corner of the Western Cape Province (Fig. 7.1). This Cape region is dominated by fynbos shrublands (see Fig. 1.6e) but this fynbos biome continues eastward far outside the MTC. The Cape region is unusual in that shrublands dominate under climate regimes that also support forests. Entire landscapes can support alternative ecosystem states. Even the semi-arid areas can support entirely different vegetation: fire-prone shrublands or fire-resistant broadleaf thickets. Perhaps more than any other MTC region, fire plays a central role in determining major vegetation patterns of winter rainfall regions of South Africa. Soils are also thought to be of major importance since much of the Cape's MTC region is on nutrient-poor sandy soils (see Fig. 1.5). A complex interplay between soils, fire and climate and, in the east, large mammal herbivory, determines boundaries of major biomes. The Cape Floristic Region is extremely rich in species with very high levels of endemism (Linder 2003). It is the world's richest temperate flora and is largely restricted to fire-prone ecosystems (Cowling et al . 1996; Linder 2003). So, contrary to the widely held popular belief that fires are an anthropogenic disturbance (e.g. Pillans 1924; Axelrod 1980), or merely incidental to this formation (Hopper 2009), a rich endemic flora has evolved in the Cape whose members are overwhelmingly fire dependent, implying a long history of natural fires as a selective force. Major Vegetation Patterns This chapter discusses fire regimes in the Cape region, what little is known of their determinants, and how they influence major vegetation patterns in the region. Though a large number of studies have explored plant responses to fire (reviewed by Bond 1997; Cowling et al . 1997a), these are heavily biased toward fynbos shrublands, the dominant vegetation cover of the region (Fig. 7.2). Fire responses of species belonging to other vegetation types are poorly known. Yet the existence of these other vegetation types is one of the central conundrums of the Cape region. It implies failure of climate alone to explain apparent convergence with other MTC regions (Chapter 1). For example, low shrublands would be expected in deserts replaced, as rainfall progressively increases, by taller shrublands, woodlands and then forests. But this is clearly not the case in the Cape region. The dominant fynbos vegetation shows very little variation in aboveground biomass from arid desert fringes (mean annual precipitation ~250 mm) to rain-drenched high-altitude heathlands (> 3000 mm) (Fig. 7.3). Yet across the entire rainfall gradient fynbos co-occurs with alternative ecosystems with much greater woody biomass. These broadleaf thickets and forests have an entirely different floristic and functional composition and often are restricted to isolated fire-protected refugia (Fig. 7.2; Taylor 1978; Kruger 1979; Cowling et al . 2005; Rebelo et al . 2006). The implication is that apparent convergence of shrubby fynbos growth forms with other MTC plant communities cannot be understood in terms of climate alone and that one needs to think in terms of the climate, fire, geology filter (see Fig. 1.4).

Cape region

Society’s struggle with unwanted species: What centuries of history reveal about species bounty programs

Species bounty programs, much like bounty hunters charged to bring fugitives to justice, enlist the public to locate and remove unwanted species through financial incentives. With the goal of reducing population sizes, these programs address perceived ecological and economic damage caused by target species. In this study, we provide the first global assessment of species bounty programs, drawing on evidence from both historical and contemporary efforts across diverse regions and cultural contexts over the past eight centuries. We uncovered a long history of bounty programs involving at least 283 species—mammals, birds, fish, plants, reptiles, mollusks, insects, amphibians, and crustaceans—across 449 programs in 60 countries. Using this collective knowledge, we offer five perspectives on species bounty programs. First, bounty programs are launched for a variety of reasons, including economic (livestock, crops, fisheries, infrastructure), ecological (species, ecosystems), and social (human health) considerations related to unwanted species. Second, bounty programs vary in their design and implementation, ranging from well-planned operations with clear management and conservation objectives to ad hoc operations with limited articulation and investigation of project outcomes. Third, evidence points to unintended consequences, in which bounty programs result in the incidental removal of non-target species or in effects that may inadvertently benefit target species. Fourth, while not always the case, fraudulent activities have been reported, compromising the management outcomes of some programs. Fifth, public perception of bounty programs is highly dynamic and ensuring program engagement remains a persistent challenge. By reviewing the scattered narratives of past and present bounty programs globally, this review seeks to inform the evolving role of this management strategy.

npj Biodiversity

International meeting on sarcoptic mange in wildlife, June 2018, Blacksburg, Virginia, USA

Sarcoptic mange is a globally distributed disease caused by the burrowing mite Sarcoptes scabiei , which also causes scabies in humans. A wide and increasing number of wild mammal species are reported to be susceptible to mange; however, the impacts of the disease in wildlife populations, mechanisms involved in its eco-epidemiological dynamics, and risks to public and ecosystem health are still unclear. Major gaps exist concerning S. scabiei host specificity and the mechanisms involved in the different presentations of the disease, which change between individuals and species. Immunological responses to the mite may have a relevant role explaining these different susceptibilities, as these affect the clinical signs, and consequently, the severity of the disease. Recently, some studies have suggested sarcoptic mange as an emerging threat for wildlife, based on several outbreaks with increased severity, geographical expansions, and novel wild hosts affected. Disease ecology experts convened for the “International Meeting on Sarcoptic Mange in Wildlife” on 4–5 June 2018, hosted by the Department of Fish and Wildlife Conservation at Virginia Tech in Blacksburg, Virginia, USA. The meeting had a structure of (i) pre-workshop review; (ii) presentation and discussions; and (iii) identification of priority research questions to understand sarcoptic mange in wildlife. The workgroup concluded that research priorities should be on determining the variation in modes of transmission for S. scabiei in wildlife, factors associated with the variation of disease severity among species, and long-terms effects of the mange in wildlife populations. In this note we summarize the main discussions and research gaps identified by the experts.

Parasites & Vectors

Partitioning sources of variation in vertebrate species richness

Aim: To explore biogeographic patterns of terrestrial vertebrates in Maine, USA using techniques that would describe local and spatial correlations with the environment. Location: Maine, USA. Methods: We delineated the ranges within Maine (86,156 km2) of 275 species using literature and expert review. Ranges were combined into species richness maps, and compared to geomorphology, climate, and woody plant distributions. Methods were adapted that compared richness of all vertebrate classes to each environmental correlate, rather than assessing a single explanatory theory. We partitioned variation in species richness into components using tree and multiple linear regression. Methods were used that allowed for useful comparisons between tree and linear regression results. For both methods we partitioned variation into broad-scale (spatially autocorrelated) and fine-scale (spatially uncorrelated) explained and unexplained components. By partitioning variance, and using both tree and linear regression in analyses, we explored the degree of variation in species richness for each vertebrate group that Could be explained by the relative contribution of each environmental variable. Results: In tree regression, climate variation explained richness better (92% of mean deviance explained for all species) than woody plant variation (87%) and geomorphology (86%). Reptiles were highly correlated with environmental variation (93%), followed by mammals, amphibians, and birds (each with 84-82% deviance explained). In multiple linear regression, climate was most closely associated with total vertebrate richness (78%), followed by woody plants (67%) and geomorphology (56%). Again, reptiles were closely correlated with the environment (95%), followed by mammals (73%), amphibians (63%) and birds (57%). Main conclusions: Comparing variation explained using tree and multiple linear regression quantified the importance of nonlinear relationships and local interactions between species richness and environmental variation, identifying the importance of linear relationships between reptiles and the environment, and nonlinear relationships between birds and woody plants, for example. Conservation planners should capture climatic variation in broad-scale designs; temperatures may shift during climate change, but the underlying correlations between the environment and species richness will presumably remain.

Journal of Biogeography

Pliocene-climate history of the western United States derived from lacustrine ostracodes

Pliocene sediments from several sites in western North America contain ostracodes indicating deposition in lacustrine and wetland settings. The ostracodes offer a means of reconstructing the aquatic paleoenvironment. Because water temperature, chemistry, and lake volume are coupled to climate, reconstruction of these parameters provides a direct insight into Pliocene climate. The site ages were determined from tephrochronology, paleomagnetics, and associated mammals. The morphology of many ostracode species also provides direct information about the paleoenvironment in which they lived. During the Pliocene (about 3.5-2.5 Ma) some species have unusually ornate carapace morphology indicative of large geologically stable lakes, which must have required a stable climate to sustain them. North American Pliocene climate changed from a modern-like state 4.5-3.5 Ma to a period with greater precipitation and less evaporation than today, 3.5-2.5 Ma. This wetter period, inferred from the large geologically long-lived lakes, implies a stable atmospheric circulation pattern. The stable circulation pattern collapsed around 2.5 Ma and climate returned to a modern-like situation.

western United States

Wildlife ecological risk assessment in the 21st century: Promising technologies to assess toxicological effects

Despite advances in toxicity testing and development of new approach methodologies (NAMs) for hazard assessment, the ecological risk assessment (ERA) framework for terrestrial wildlife (i.e., air-breathing amphibians, reptiles, birds, and mammals) has remained unchanged for decades. While survival, growth, and reproductive endpoints derived from whole animal toxicity tests are central to hazard assessment, non-standard measures of biological effects at multiple levels of biological organization (e.g., molecular, cellular, tissue, organ, organism, population, community, ecosystem) have potential to enhance the relevance of prospective and retrospective wildlife ERAs. Other factors (e.g., indirect effects of contaminants on food supplies and infectious disease processes) are influenced by toxicants at individual, population, and community levels, and need to be factored into chemically-based risk assessments to enhance the “eco” component of ERAs. Regulatory and logistical challenges often relegate such non-standard endpoints and indirect effects to post-registration evaluations of pesticides and industrial chemicals, and contaminated site evaluations. While NAMs are being developed, to date their applications in ERAs focused on wildlife have been limited. No single magic tool or model will address all uncertainties in hazard assessment. Modernizing wildlife ERAs will likely entail combinations of laboratory and field-derived data at multiple levels of biological organization, knowledge collection solutions (e.g., systematic review, adverse outcome pathway frameworks), and inferential methods that facilitate integrations and risk estimations focused on species, populations, interspecific extrapolations, and ecosystem services modeling, with less dependence on whole animal data and simple hazard ratios.

Integrated Environmental Assessment and Management