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USGS2004

Habitat use and spatial structure of a barking frog (Eleutherodactylus augusti) population in southeastern Arizona

Barking Frogs ( Eleutherodactylus augusti ) are the northernmost ranging member of the large tropical family Leptodactylidae. We investigated the ecology of this saxicolous species at the northern edge of its range in a canyon in southern Arizona. We captured 54 frogs on discontinuous rock outcrops; eight of nine females and 39 of 45 males were on limestone outcrops. The remaining frogs were closer to limestone outcrops by more than 200 m than would be expected if they were distributed randomly with respect to limestone formations. Seven of 10 frogs radio-tracked had core home ranges (50% fixed kernel) from 94 to 100% on limestone; the other three frogs did not have any part of their home range on limestone outcrops. During five years of mark-recapture efforts, no frogs were found on a different outcrop from the one where they were originally captured; no radio-tracked frogs moved between outcrops during the breeding season. We estimated that four to 20 Barking Frogs occupied each outcrop; these groups probably are connected primarily by juvenile dispersal. As an organism living at the edge of its range, Barking Frogs in Arizona may rely heavily on extensive underground areas such as those found in limestone to protect them from a physiologically challenging environment. To manage for the persistence of Barking Frogs in southern Arizona, we must identify and protect habitat patches and movement pathways among them.

Arizona↗

USGS1977

Geochemistry of the Mattole River in Northern California

The chemical composition of streams can vary greatly with changing discharge during storm runoff. These chemical changes are related to the pathways of various water parcels from the time they fall as rain until they enter the stream, and to the interactions between water and sediment during transport downstream. In order to understand better the chemical variations during storms, an extensive investigation was made of the Mattole River, a chemically clean coastal stream in Mendocino County, California. The Mattole drains a topographically mature basin of 620 sw km which has relief of about 1200 m, a long summer dry season, and mean annual rainfall of about 2300 mm. The stream flow is composed of seasonally varying proportions of four flow components, namely, surface runoff, quick-return flow (rainfall having brief and intimate contact with the soil before entering the surface drainage), delayed-return flow, and base runoff. Each component is identified by its characteristic chemistry and by the time delay between rainfall and entrance into the stream. Information is also presented on rain chemistry, adsorption reactions of suspended sediments in the fresh and brackish environments, and compositional variation of river sediments with particle size. (Woodard-USGS)

Open-File Report↗

USGS2018

Fog water collection effectiveness: Mesh intercomparisons

To explore fog water harvesting potential in California, we conducted long-term measurements involving three types of mesh using standard fog collectors (SFC). Volumetric fog water measurements from SFCs and wind data were collected and recorded in 15-minute intervals over three summertime fog seasons (2014–2016) at four California sites. SFCs were deployed with: standard 1.00 m 2 double-layer 35% shade coefficient Raschel; stainless steel mesh coated with the MIT-14 hydrophobic formulation; and FogHa-Tin, a German manufactured, 3-dimensional spacer fabric deployed in two orientations. Analysis of 3419 volumetric samples from all sites showed strong relationships between mesh efficiency and wind speed. Raschel mesh collected 160% more fog water than FogHa-Tin at wind speeds less than 1 m s –1 and 45% less for wind speeds greater than 5 m s –1 . MIT-14 coated stainless-steel mesh collected more fog water than Raschel mesh at all wind speeds. At low wind speeds of < 1 m s –1 the coated stainless steel mesh collected 3% more and at wind speeds of 4–5 m s –1 , it collected 41% more. FogHa-Tin collected 5% more fog water when the warp of the weave was oriented vertically, per manufacturer specification, than when the warp of the weave was oriented horizontally. Time series measurements of three distinct mesh across similar wind regimes revealed inconsistent lags in fog water collection and inconsistent performance. Since such differences occurred under similar wind-speed regimes, we conclude that other factors play important roles in mesh performance, including in-situ fog event and aerosol dynamics that affect droplet-size spectra and droplet-to-mesh surface interactions.

California↗

USGS2020

Preliminary investigation of the critically imperiled Caney Mountain cave crayfish Orconectes stygocaneyi Hobbs III, 2001 (Decapoda: Cambaridae) in Missouri, USA

The Caney Mountain cave crayfish ( Orconectes stygocaneyi ) is one of North America's rarest crayfish, endemic to one cave in southern Missouri, USA. The species is listed as 'critically imperiled' by Missouri, and 'threatened' by the American Fisheries Society. Previously, only 15 crayfish have been observed in Mud Cave, and only two have been collected (for original species description). We aimed to collect the first natural history data on the species and search adjacent caves and springs for additional populations. Twelve visual searches and supplemental trapping over four years, in all seasons, yielded 69 O. stygocaneyi (including 11 young-of-year) observations and capture of 22 crayfish, including one ovigerous female. Visual searches of nearby caves and springs yielded no O. stygocaneyi records. However, multiple surveys of those caves and springs, using environmental DNA detected the species in one additional cave adjacent to Mud Cave, but only during spring high flow events when the caves may be ephemerally connected. Orconectes stygocaneyi 's distribution is among the most restricted of any North American crayfish, and further evaluation of its conservation status designations might be warranted. Long term conservation of O. stygocaneyi would benefit from management practices promoting sustained, unimpacted surface runoff within Mud Cave's recharge area.

Missouri↗

USGS1991

Ecology and behavior of the zenaida dove

Data are summarized from a 10 year study of the Zenaida Dove (Zenaida aurita) in Puerto Rico and its offshore islands. The dove displays sexual size dimorphism, with males generally larger than females: Most activities (feeding, courtship, fighting) occurred in mornings and afternoons, whereas loafing and maintenance activities were more prevalent at mid-day. I recorded 77 plant species used as food by Zenaida Doves in Puerto Rico. Major food species uncluded Scleria lithosperma, Argemone mexicana, Croton rigidus, Phyllanthus amarus, Cordia angustifolia, Zanthoxylum martinicense, Euphorbia heterophylla, and several species of legumes. Zenaida Doves have two major vocalizations: the 'Coo', or Advertisement Call, given in assertive and sexual contexts, and the Nest Call, primarily used at or near the nest. Doves nested in a wide variety of habitats, including forest edge, mangrove forest, dry scrub, and mixed agriculture-urban areas. Nests were generally placed in trees, but doves nested on the ground where certain terrestrial predators were absent. Nests were found in all months of the year, although a breeding peak occurred from March through Mayor July. Doves replaced clutches when nests were destroyed, and recycled up to four times in a season. Males selected nest sites and initiated building. Eggs (2) were laid on alternate days, beginning about two days after the nest was completed. Incubation and nestling stages averaged 13.9 :t 0.5 [SE] and 14.3 :t 0.6 days. The male attended the nest from mid-morning (X = 08:59 hr) through mid-afternoon (x = 16:53), then the female took over incubation and brooding duties for the night. Nests were continuously covered from the laying of the first egg through day seven of the nestling stage. Thereafter, adult attendance dropped steadily until day 14, when they carne to the nest only for chick feedings. Chicks (days 0-15) showed a mean daily weight gain of 18.3% and attained a fledging weight of about 120g (81% of adult weight). The mean daily growth (culmen, tarsometatarsus, ulna) was 6.8% (range = 4.0-9.8% daily). Dove productivity varied among and within study areas over the 10 years. Mean number of chicks hatched per nest that held eggs ranged from 0.3 to 1.6 for 3 study areas. Mean number fledged per nest ranged from 0.3 to 1.4. Productivity was lowest in the dry southwestern Puerto Rico study area (Susua and Guanica forests; x = 0.7 chicks fledged per nest) and was highest for the lower montane mixed agriculture/urban area (Cidra; 1.2). Populations nesting in scrub and mangrove forests (Roosevelt Roads Naval Station) fledged an average of 0.9 chicks/nest. Nest success followed a similar geographic pattern: southwestern Puerto Rico -40.9% of nests with eggs were successful, Cidra -62.6%, and Roosevelt Roads -52.0%. The most important sources of dove egg and chick loss were Pearly-eyed Thrashers (Margarops fuscatus -49% of losses) and roof rats (Rattus rattus -16%).

Ornitologia Neotropical↗

USGS2010

Short-term effects of burn season on flowering phenology of savanna plants

We examined the effect of season of burn on flowering phenology of groundlayer species, in the year following burns, in a mesic-sand Midwestern oak savanna. Burn treatments were fall, early-season, growing-season, late-season, and 1 or 5 years after a prior early-season wildfire. For these treatments, we compared the number of flowering stems and of flowers for species overall, for the 20 most prolifically flowering species, as well as for species grouped by flowering phenoperiods, and by growth form. Growing-season burn had a significant negative effect on number of flowering stems and total number of flowers. This effect occurred when either the burn occurred during the flowering season or during the season prior to the flowering phenoperiod. Tradescantia ohiensis showed expedited flowering and Phlox pilosa showed delayed flowering in response to early-season burning. Flowering of early shrubs was reduced by the previous fall and early-spring fires, while flowering of mid-season blooming shrubs was reduced by the early- and growing-season burns. Vaccinium and Gaylussacia , early-flowering shrubs, produced fewer flowers 1 year after than 5 years after an early-season burn. Arabis lyrata showed reduced flowering from the early-season burn. We also found four instances where the early-spring burn effect on flowering was more severe than the fall burn effect, suggesting that many frequent early-season burns may be deleterious to flowering and reproduction of some species. Burns occurring too frequently in the same season could negatively affect future flowering and reproduction of these plant species.

Plant Ecology↗

USGS2024

Seasonal drought treatments impact plant and microbial uptake of nitrogen in a mixed shrub grassland on the Colorado Plateau

For many drylands, both long- and short-term drought conditions can accentuate landscape heterogeneity at both temporal (e.g., role of seasonal patterns) and spatial (e.g., patchy plant cover) scales. Furthermore, short-term drought conditions occurring over one season can exacerbate long-term, multidecadal droughts or aridification, by limiting soil water recharge, decreasing plant growth, and altering biogeochemical cycles. Here, we examine how experimentally altered seasonal precipitation regimes in a mixed shrub grassland on the Colorado Plateau impact soil moisture, vegetation, and carbon and nitrogen cycling. The experiment was conducted from 2015 to 2019, during a regional multidecadal drought event, and consisted of three precipitation treatments, which were implemented with removable drought shelters intercepting ~66% of incoming precipitation including: control (ambient precipitation conditions, no shelter), warm season drought (sheltered April–October), and cool season drought (sheltered November–March). To track changes in vegetation, we measured biomass of the dominant shrub, Ephedra viridis , and estimated perennial plant and ground cover in the spring and the fall. Soil moisture dynamics suggested that warm season experimental drought had longer and more consistent drought legacy effects (occurring two out of the four drought cycles) than either cool season drought or ambient conditions, even during the driest years. We also found that E. viridis biomass remained consistent across treatments, while bunchgrass cover declined by 25% by 2019 across all treatments, with the earliest declines noticeable in the warm season drought plots. Extractable dissolved inorganic nitrogen and microbial biomass nitrogen concentrations appeared sensitive to seasonal drought conditions, with dissolved inorganic nitrogen increasing and microbial biomass nitrogen decreasing with reduced soil volumetric water content. Carbon stocks were not sensitive to drought but were greater under E. viridis patches. Additionally, we found that under E. viridis , there was a negative relationship between dissolved inorganic nitrogen and microbial biomass nitrogen, suggesting that drought-induced increases in dissolved inorganic nitrogen may be due to declines in nitrogen uptake from microbes and plants alike. This work suggests that perennial grass plant–soil feedbacks are more vulnerable to both short-term (seasonal) and long-term (multiyear) drought events than shrubs, which can impact the future trajectory of dryland mixed shrub grassland ecosystems as drought frequency and intensity will likely continue to increase with ongoing climate change.

Ecology↗

USGS2018

Spatially explicit patterns in a dryland's soil respiration and relationships with climate, whole plant photosynthesis and soil fertility

Arid and semiarid ecosystems play a significant role in regulating global carbon cycling, yet our understanding of the controls over the dominant pathways of dryland CO 2 exchange remains poor. Substantial amounts of dryland soil are not covered by vascular plants and this patchiness in cover has important implications for spatial patterns and controls of carbon cycling. Spatial variation in soil respiration has been attributed to variation in soil moisture, temperature, nutrients and rhizodeposition, while seasonal patterns have been attributed to changes in moisture, temperature and photosynthetic inputs belowground. To characterize how controls over respiration vary spatially and temporally in a dryland ecosystem and to concurrently explore multiple potential controls, we estimated whole plant net photosynthesis (A net ) and soil respiration at four distances from the plant base, as well as corresponding fine root biomass and soil carbon and nitrogen pools, four times during a growing season. To determine if the controls vary between different plant functional types for Colorado Plateau species, measurements were made on the C 4 shrub, Atriplex confertifolia , and C 3 grass, Achnatherum hymenoides . Soil respiration declined throughout the growing season and diminished with distance from the plant base, though variations in both were much smaller than expected. The strongest relationship was between soil respiration and soil moisture. Soil respiration was correlated with whole plant A net , although the relationship varied between species and distance from plant base. In the especially dry year of this study we did not observe any consistent correlations between soil respiration and soil carbon or nitrogen pools. Our findings suggest that abiotic factors, especially soil moisture, strongly regulate the response of soil respiration to biotic factors and soil carbon and nitrogen pools in dryland communities and, at least in dry years, may override expected spatial and seasonal patterns.

Oikos↗

USGS2024

Why do avian responses to change in Arctic green-up vary?

Global climate change has altered the timing of seasonal events (i.e., phenology) for a diverse range of biota. Within and among species, however, the degree to which alterations in phenology match climate variability differ substantially. To better understand factors driving these differences, we evaluated variation in timing of nesting of eight Arctic-breeding shorebird species at 18 sites over a 23-year period. We used the Normalized Difference Vegetation Index as a proxy to determine the start of spring (SOS) growing season and quantified relationships between SOS and nest initiation dates as a measure of phenological responsiveness. Among species, we tested four life history traits (migration distance, seasonal timing of breeding, female body mass, expected female reproductive effort) as species-level predictors of responsiveness. For one species (Semipalmated Sandpiper), we also evaluated whether responsiveness varied across sites. Although no species in our study completely tracked annual variation in SOS, phenological responses were strongest for Western Sandpipers, Pectoral Sandpipers, and Red Phalaropes. Migration distance was the strongest additional predictor of responsiveness, with longer-distance migrant species generally tracking variation in SOS more closely than species that migrate shorter distances. Semipalmated Sandpipers are a widely distributed species, but adjustments in timing of nesting relative to variability in SOS did not vary across sites, suggesting that different breeding populations of this species were equally responsive to climate cues despite differing migration strategies. Our results unexpectedly show that long-distance migrants are more sensitive to local environmental conditions, which may help them to adapt to ongoing changes in climate.

Article↗

USGS2007

Distinguishing sources of ground water recharge by using δ2H and δ18O

Stable isotope values of hydrogen and oxygen from precipitation and ground water samples were compared by using a volumetrically based mixing equation and stable isotope gradient to estimate the season and location of recharge in four basins. Stable isotopes were sampled at 11 precipitation sites of differing elevation during a 2-year period to quantify seasonal stable isotope contributions as a function of elevation. Supplemental stable isotope data collected by the International Atomic Energy Association during a 14-year period were used to reduce annual variability of the mean seasonal stable isotope data. The stable isotope elevation relationships and local precipitation elevation relationships were combined by using a digital elevation model to calculate the total volumetric contribution of water and stable isotope values as a function of elevation within the basins. The results of these precipitation calculations were compared to measured ground water stable isotope values at the major discharge points near the terminus of the basins. Volumetric precipitation contributions to recharge were adjusted to isolate contributing elevations. This procedure provides an improved representation of recharge contributions within the basins over conventional stable isotope methods. Stable isotope values from wells and springs at the terminus of each basin were used to infer the elevations of precipitation important for recharge of the regional ground water flow system. Ancillary climatic, geologic, and stable isotope values were used to further constrain the location where precipitation is entering the ground water flow system.

Arizona↗

USGS2005

An introduction to mid-Atlantic seasonal pools

Seasonal pools, also known as vernal ponds, provide important ecological services to the mid-Atlantic region. This publication serves as an introduction to seasonal pool ecology and management; it also provides tools for exploring seasonal pools, including a full-color field guide to wildlife. Seasonal pools are defined as having four distinctive features: surface water isolation, periodic drying, small size and shallow depth, and support of a characteristic biological community. Seasonal pools experience regular drying that excludes populations of predatory fish. Thus, pools in the mid-Atlantic region provide critical breeding habitat for amphibian and invertebrate species (e.g., spotted salamander (Ambystoma maculatum), wood frog (Rana sylvatica), and fairy shrimp (Order Anostraca)) that would be at increased risk of predation in more permanent waters. The distinctive features of seasonal pools also make them vulnerable to human disturbance. In the mid-Atlantic region, land-use changes pose the greatest challenges to seasonal pool conservation. Seasonal pools are threatened by direct loss (e.g., filling or draining of the pool) as well as by destruction and fragmentation of adjoining terrestrial habitat. Many of the species that depend on seasonal pools for breeding spend the majority of their lives in the surrounding lands that extend a radius of 1000 feet or more from the pools; these vital habitats are being transected by roads and converted to other land uses. Other threats to seasonal pools include biological introductions and removals, mosquito control practices, amphibian diseases, atmospheric deposition, and climate change. The authors recommend a three-pronged strategy for seasonal pool conservation and management in the mid-Atlantic region: education and research, inventory and monitoring of seasonal pools, and landscape-level planning and management.

Report↗

USGS1996

Water-quality characteristics and suspended sediment of the Clinch and Powell rivers in northeastern Tennessee, 1989-94

The U.S. Geological Survey, in cooperation with the Tennessee State Planning Office, conducted a 4 l/2-year water-quality study in the Clinch and Powell River drainage basins in northeastern Tennessee. An intermittent sampling program was conducted from June 1989 through January 1994. Water-quality samples were collected and analyzed for an upstream site and a downstream site on each river. The upstream sites were near the Tennessee-Virginia State line, and the downstream sites were located on the rivers upstream of Norris Lake. At the upstream sites, fecal coliform bacteria exceeded the water-quality criteria for recreational use in 14 of 40 samples. At the downstream sites, counts exceeded the criteria limits in 2 out of 22 samples. Concentrations of nitrogen and phosphorus compounds were within the range expected for natural surface water. Nutrient discharge did not correlate well to streamflow, rainfall, and seasonal effects. Suspended-sediment discharge at the four study sites was related to streamflow, a rainfall factor, and seasonal effects. Average annual sediment yields among sites were estimated at 97 tons per square mile per year on the Clinch River and 184 tons per square mile per year on the Powell River. Concentrations of calcium, magnesium, sodium, potassium, sulfate, chloride, silica, and fluoride were all measured within the range expected for a natural carbonate system. Instantaneous total-iron concentrations exceeded the U.S. Environmental Protection Agency criteria for fish and aquatic life at the upstream sites in 23 of 28 samples on the Clinch River, and in 38 of 44 samples on the Powell River. At the downstream sites, total iron exceeded the same criteria in 2 of 5 samples on the Clinch River, and in 1 of 4 samples on the Powell River.

Tennessee↗

USGS2014

Relations of water-quality constituent concentrations to surrogate measurements in the lower Platte River corridor, Nebraska, 2007 through 2011

The lower Platte River, Nebraska, provides drinking water, irrigation water, and in-stream flows for recreation, wildlife habitat, and vital habitats for several threatened and endangered species. The U.S. Geological Survey (USGS), in cooperation with the Lower Platte River Corridor Alliance (LPRCA) developed site-specific regression models for water-quality constituents at four sites (Shell Creek near Columbus, Nebraska [USGS site 06795500]; Elkhorn River at Waterloo, Nebr. [USGS site 06800500]; Salt Creek near Ashland, Nebr. [USGS site 06805000]; and Platte River at Louisville, Nebr. [USGS site 06805500]) in the lower Platte River corridor. The models were developed by relating continuously monitored water-quality properties (surrogate measurements) to discrete water-quality samples. These models enable existing web-based software to provide near-real-time estimates of stream-specific constituent concentrations to support natural resources management decisions. Since 2007, USGS, in cooperation with the LPRCA, has continuously monitored four water-quality properties seasonally within the lower Platte River corridor: specific conductance, water temperature, dissolved oxygen, and turbidity. During 2007 through 2011, the USGS and the Nebraska Department of Environmental Quality collected and analyzed discrete water-quality samples for nutrients, major ions, pesticides, suspended sediment, and bacteria. These datasets were used to develop the regression models. This report documents the collection of these various water-quality datasets and the development of the site-specific regression models. Regression models were developed for all four monitored sites. Constituent models for Shell Creek included nitrate plus nitrite, total phosphorus, orthophosphate, atrazine, acetochlor, suspended sediment, and Escherichia coli (E. coli) bacteria. Regression models that were developed for the Elkhorn River included nitrate plus nitrite, total Kjeldahl nitrogen, total phosphorus, orthophosphate, chloride, atrazine, acetochlor, suspended sediment, and E. coli. Models developed for Salt Creek included nitrate plus nitrite, total Kjeldahl nitrogen, suspended sediment, and E. coli. Lastly, models developed for the Platte River site included total Kjeldahl nitrogen, total phosphorus, sodium, metolachlor, atrazine, acetochlor, suspended sediment, and E. coli.

Nebraska↗

USGS2002

Does increasing daylength control seasonal changes in clutch sizes of Northern Pintails ( Anas acuta )?

We evaluated spatiotemporal variation in clutch sizes of Northern Pintails (pintails; Anas acuta ) nesting in California (1985 to 1996), North Dakota (1982 to 1985), Saskatchewan (1982 to 1985) and Alaska (1991 to 1993) to determine whether seasonal declines in clutch size varied in ways that were consistent with a controlling influence of increasing day length. Pintails began nesting in mid-March in California, mid-April in North Dakota and Saskatchewan, and mid-May in Alaska. Observed durations of nesting were 70 ± 2.6 days (SE) in California, 60 ± 6.3 days in North Dakota, 66 ± 1.3 days in Saskatchewan, and 42 ± 0.7 days in Alaska. Annual differences were the principal source of variation in mean clutch sizes (σ̂ Y 2 = 0.15, SE = 0.049), which varied little among study locations (σ̂ A 2 = 0.002, SE = 0.013). Predicted rates of seasonal decline in clutch sizes increased with latitude early in the nesting season, but declined as the nesting season progressed, except in California. Rates of decline in clutch sizes thus were not directly related to rates of increase in day length. Predicted declines in numbers of eggs per clutch over the nesting season were similar for all four locations (range, 3.05–3.12) despite wide variation in durations of nesting. Evidence suggests that reduced nutrient availability during nesting contributes to a higher rate of decline in clutch sizes in Alaska than in temperate regions. Pintails that nest early lay large initial clutches, but thereafter clutch sizes decline rapidly and breeding terminates early. This reproductive strategy is adaptive because young that hatch earliest exhibit the highest survival rates; however, the conversion of grassland to cropland on the primary prairie breeding grounds has reduced hatching rates of clutches laid early in the nesting season. Under these conditions, the limited capacity to renest in late spring on their prairie breeding grounds probably has contributed to Pintail population declines.

The Auk↗

USGS2009

Seasonal Distribution and Abundance of Larval and Juvenile Lost River and Shortnose Suckers in Hanks Marsh, Upper Klamath National Wildlife Refuge, Upper Klamath Lake, Oregon: 2007 Annual Report

In the summer of 2007, we undertook an assessment of larval and juvenile sucker use of Hanks Marsh in Upper Klamath Lake, Oregon. This 1,200-acre marsh on the southeastern shoreline of the lake represents part of the last remaining natural emergent wetland habitat in the lake. Because of the suspected importance of this type of habitat to larval and juvenile endangered Lost River and shortnose suckers, it was thought that sucker abundance in the marsh might be comparatively greater than in other non-vegetated areas of the lake. It also was hoped that Hanks Marsh would serve as a reference site for wetland restoration projects occurring in other areas of the lake. Our study had four objectives: to (1) examine seasonal distribution and relative abundance of larval suckers in and adjacent to Hanks Marsh in relation to habitat features such as depth, vegetation, water quality, and relative abundance of non-sucker species; (2) determine the presence or absence and describe the distribution of juvenile suckers [35 to 80 mm standard length (SL)] along the periphery of Hanks Marsh; (3) assess spatial and temporal overlap between larval suckers and their potential predators; and (4) assess suitability of water quality throughout the summer for young-of-the-year suckers. Due to the low number of suckers found in the marsh and our inability to thoroughly sample all marsh habitats due to declining lake levels during the summer, we were unable to completely address these objectives in this pilot study. The results, however, do give some indication of the relative use of Hanks Marsh by sucker and non-sucker species. Through sampling of larval and juvenile suckers in various habitat types within the marsh, we determined that sucker use of Hanks Marsh may be very low in comparison with other areas of the lake. We caught only 42 larval and 19 juvenile suckers during 12 weeks of sampling throughout the marsh. Sucker catches were rare in Hanks Marsh, and were lower than catch rates in other marshes of Upper Klamath Lake and in other nearshore and offshore areas of the lake. Based on the few suckers we did capture in Hanks Marsh, larvae tended to be found more often in vegetated habitats. A modified sampling design and approach may be necessary to address the objectives in this study, given that declining lake-surface elevation prevented us from adequately sampling all portions of the marsh throughout the sampling season. Common non-sucker species in Hanks Marsh included juvenile and adult brown bullhead, larval blue chub, tui chub, fathead minnow, and yellow perch. This species composition was similar to that of other marshes in Upper Klamath Lake but most species were found in lower numbers in Hanks Marsh than other marshes. It may be that use of Hanks Marsh is limited by poor water quality, which we found to exist at many sites after June. It also may be that access to or habitat in the marsh is limited at certain times of the year by low water. Although the results from this initial study of Hanks Marsh indicate that the area may have little direct benefit for sucker species, indirect benefits for these species possibly may come from its positive influence on some aspects of water quality in the lake, such as regulation of pH. It also may be the case that use of Hanks Marsh may vary by year and conditions; however, under the current scope of the study, we were unable to investigate inter-annual variability.

Open-File Report↗

USGS1996

Eutrophication trends inferred from hypolimnetic dissolved-oxygen dynamics within selected White River reservoirs, northern Arkansas-southern Missouri, 1974-94

The White River Basin in northern Arkansas and southern Missouri contains four major reservoirs. Beaver, Table Rock, and Bull Shoals Lakes form a chain of reservoirs on the main stem of the White River. Norfork Lake is on the North Fork River, a tributary of the White River. Vertical water- column profiles of temperature and dissolved- oxygen concentrations have been collected monthly, in general, at sites near the dam of each reservoir since 1974. Hypolimnetic dissolved- oxygen dynamics of these reservoirs from 1974 through 1994 were examined based on the near-dam data and used to infer temporal changes in eutrophication. Regression models indicated that a positive relation existed between discharge through the dam during the stratification season and the areal hypolimnetic deficit. Temporal changes in the relative areal hypolimnetic oxygen deficit, a model that adjusts the areal hypolimnetic oxygen deficit to standard temperature and depth, showed a decreasing trend in Beaver Lake from 1974 through 1994, indicating that the level of eutrophication decreased. Little or no change in the relative areal hypolimnetic oxygen deficit occurred in Table Rock, Bull Shoals, or Norfork Lakes over the period of record. Temporal analysis of the residuals from the oxygen deficit-discharge model indicated that the oxygen deficit-discharge function changed over time in Beaver and Table Rock Lakes. There was little or no temporal trend in residuals of areal hypolimnetic oxygen deficit over the period of record for Bull Shoals and Norfork Lakes. Multiple regression using a time variable and discharge through the dam during the stratification season was examined for the four reservoirs. The slope coefficient of the time variable for both Beaver and Table Rock Lakes was negative, indicating that the temporal function driving the discharge related areal hypolimnetic oxygen deficit decreased over the period of record. This temporal function may be an expression of biological productivity or eutrophication. Based on these results, the level of eutrophication may have decreased in Beaver and Table Rock Lakes and remained stable in Bull Shoals and Norfork Lakes from 1974 through 1994. It is possible that the aging and evolutionary processes in Beaver, Table Rock, Bull Shoals, and Norfork Lakes are dominant in controlling biological productivity and eutrophication in each reservoir immediately above the dam. Beaver Lake is the youngest of the four reservoirs, constructed in 1963, and for the period of record, may have been in the initial stage of high productivity followed by a declining stage of productivity that generally occurs within a reservoir soon after impoundment. Table Rock Lake was constructed in 1959 and, for the period of record, may have been in the stage of declining productivity following the peak of productivity resulting from impoundment. The impoundment of Beaver Lake upstream also may have influenced the inferred decline of productivity within Table Rock Lake. Bull Shoals and Norfork Lakes are older than Beaver and Table Rock Lakes, constructed in 1951 and 1944, respectively. The reason that changes in eutrophication were not detected in Bull Shoals and Norfork Lakes could be that these reservoirs, for the period of record, were characterized by the stage of low and stable productivity that generally occurs within a reservoir many years after impoundment.

Water-Resources Investigations Report↗

USGS2005

Modeling avian abundance from replicated counts using binomial mixture models

Abundance estimation in ecology is usually accomplished by capture–recapture, removal, or distance sampling methods. These may be hard to implement at large spatial scales. In contrast, binomial mixture models enable abundance estimation without individual identification, based simply on temporally and spatially replicated counts. Here, we evaluate mixture models using data from the national breeding bird monitoring program in Switzerland, where some 250 1-km 2 quadrats are surveyed using the territory mapping method three times during each breeding season. We chose eight species with contrasting distribution (wide–narrow), abundance (high–low), and detectability (easy–difficult). Abundance was modeled as a random effect with a Poisson or negative binomial distribution, with mean affected by forest cover, elevation, and route length. Detectability was a logit-linear function of survey date, survey date-by-elevation, and sampling effort (time per transect unit). Resulting covariate effects and parameter estimates were consistent with expectations. Detectability per territory (for three surveys) ranged from 0.66 to 0.94 (mean 0.84) for easy species, and from 0.16 to 0.83 (mean 0.53) for difficult species, depended on survey effort for two easy and all four difficult species, and changed seasonally for three easy and three difficult species. Abundance was positively related to route length in three high-abundance and one low-abundance (one easy and three difficult) species, and increased with forest cover in five forest species, decreased for two nonforest species, and was unaffected for a generalist species. Abundance estimates under the most parsimonious mixture models were between 1.1 and 8.9 (median 1.8) times greater than estimates based on territory mapping; hence, three surveys were insufficient to detect all territories for each species. We conclude that binomial mixture models are an important new approach for estimating abundance corrected for detectability when only repeated-count data are available. Future developments envisioned include estimation of trend, occupancy, and total regional abundance.

Ecological Applications↗

USGS2003

Concentrations and loads of suspended sediment and nutrients in surface water of the Yakima River basin, Washington, 1999-2000 [electronic resource] : with an analysis of trends in concentrations

Spatial and temporal variations in concentrations and loads of suspended sediment and nutrients in surface water of the Yakima River Basin were assessed using data collected during 1999?2000 as part of the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program. Samples were collected at 34 sites located throughout the Basin in August 1999 using a Lagrangian sampling design, and also were collected weekly and monthly from May 1999 through January 2000 at three of the sites. Nutrient and sediment data collected at various time intervals from 1973 through 2001 by the USGS, Bureau of Reclamation, Washington State Department of Ecology, and Roza-Sunnyside Board of Joint Control were used to assess trends in concentrations. During irrigation season (mid-March to mid-October), concentrations of suspended sediment and nutrients in the Yakima River increase as relatively pristine water from the forested headwaters moves downstream and mixes with discharges from streams, agricultural drains, and wastewater treatment plants. Concentrations of nutrients also depend partly on the proportions of mixing between river water and discharges: in years of ample water supply in headwater reservoirs, more water is released during irrigation season and there is more dilution of nutrients discharged to the river downstream. For example, streamflow from river mile (RM) 103.7 to RM 72 in August 1999 exceeded streamflow in July 1988 by a factor of almost 2.5, but loads of total nitrogen and phosphorus discharged to the reach from streams, drains, and wastewater treatment plants were only 1.2 and 1.1 times larger. In years of ample water supply, canal water, which is diverted from either the Yakima or Naches River, makes up more of the flow in drains and streams carrying agricultural return flows. The canal water dilutes nutrients (especially nitrate) transported to the drains and streams in runoff from fields and in discharges from subsurface field drains and the shallow ground-water system. The average concentration of total nitrogen in drains and streams discharging to the Yakima River from RM 103.7 to RM 72 in August 1999 was 2.63 mg/L, and in July 1988 was 3.16 mg/L; average concentrations of total phosphorus were 0.20 and 0.26 mg/L. After irrigation season, streamflow in agricultural drains decreases because irrigation water is no longer diverted from the Yakima and Naches Rivers. As a result, concentrations of total nitrogen in drains increase because nitrate, which constitutes much of total nitrogen, continues to enter the drains from subsurface drains and shallow ground water. Concentrations of total phosphorus and suspended sediment often decrease, because they are transported to the drains in runoff of irrigation water from fields. In Granger Drain, concentrations of total nitrogen ranged from 2-4 mg/L during irrigation season and increased to about 6 mg/L after irrigation season, and concentrations of total phosphorus, as high as 1 mg/L, decreased to about 0.2 mg/L. In calendar year 1999, Moxee Drain transported an average of 28,000 lb/d (pounds per day) of suspended sediment, 380 lb/d of total nitrogen, and 46 lb/d of total phosphorus to the Yakima River. These loads were about half the average loads transported by Granger Drain during the same period. Average streamflows were similar for the two drains, so the difference in loads was due to differences in constituent concentrations: those in Moxee Drain were about 40-60 percent less than those in Granger Drain. Loads of suspended sediment and total phosphorus in Moxee and Granger Drains were nearly four times higher during irrigation season than during the non-irrigation season because with increased flow during irrigation season, concentrations of suspended sediment and total phosphorus are usually higher. Loads of nitrate in the drains were about the same in both seasons because nitrate concentrations are higher during the non-irrigation season.

Water-Resources Investigations Report↗