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USGS2008

Suspended sediment transport in the freshwater reach of the Hudson river estuary in eastern New York

Deposition of Hudson River sediment into New York Harbor interferes with navigation lanes and requires continuous dredging. Sediment dynamics at the Hudson estuary turbidity maximum (ETM) have received considerable study, but delivery of sediment to the ETM through the freshwater reach of the estuary has received relatively little attention and few direct measurements. An acoustic Doppler current profiler was positioned at the approximate limit of continuous freshwater to develop a 4-year time series of water velocity, discharge, suspended sediment concentration, and suspended sediment discharge. This data set was compared with suspended sediment discharge data collected during the same period at two sites just above the Hudson head-of-tide (the Federal Dam at Troy) that together represent the single largest source of sediment entering the estuary. The mean annual suspended sediment-discharge from the freshwater reach of the estuary was 737,000 metric tons. Unexpectedly, the total suspended sediment discharge at the study site in November and December slightly exceeded that observed during March and April, the months during which rain and snowmelt typically result in the largest sediment discharge to the estuary. Suspended sediment discharge at the study site exceeded that from the Federal Dam, even though the intervening reach appears to store significant amounts of sediment, suggesting that 30-40% of sediment discharge observed at the study site is derived from tributaries to the estuary between the Federal Dam and study site. A simple model of sediment entering and passing through the freshwater reach on a timescale of weeks appears reasonable during normal hydrologic conditions in adjoining watersheds; however, this simple model may dramatically overestimate sediment delivery during extreme tributary high flows, especially those at the end of, or after, the "flushing season" (October through April). Previous estimates of annual or seasonal sediment delivery from tributaries and the Federal Dam to the ETM and harbor may be high for those years with extreme tributary high-flow events. ?? 2008 Coastal and Estuarine Research Federation.

Estuaries and Coasts↗

USGS2008

Effects of the herbicide diuron on cordgrass (Spartina foliosa) reflectance and photosynthetic parameters

Early indicators of salt marsh plant stress are needed to detect stress before it is manifested as changes in biomass and coverage. We explored a variety of leaf-level spectral reflectance and fluorescence variables as indicators of stress in response to the herbicide diuron. Diuron, a Photosystem II inhibitor, is heavily used in areas adjacent to estuaries, but its ecological effects are just beginning to be recognized. In a greenhouse experiment, we exposed Spartina foliosa , the native cordgrass in California salt marshes, to two levels of diuron. After plant exposure to diuron for 28 days, all spectral reflectance indices and virtually all fluorescence parameters indicated reduced pigment and photosynthetic function, verified as reduced CO 2 assimilation. Diuron exposure was not evident, however, in plant morphometry, indicating that reflectance and fluorescence were effective indicators of sub-lethal diuron exposure. Several indices (spectral reflectance index ARI and fluorescence parameters EQY, Fo, and maximum rETR) were sensitive to diuron concentration. In field trials, most of the indices as well as biomass, % cover, and canopy height varied predictably and significantly across a pesticide gradient. In the field, ARI and Fo regressed most significantly and strongly with pesticide levels. The responses of ARI and Fo in both the laboratory and the field make these indices promising as sensitive, rapid, non-destructive indicators of responses of S. foliosa to herbicides in the field. These techniques are employed in remote sensing and could potentially provide a link between landscapes of stressed vegetation and the causative stressor(s), which is crucial for effective regulation of pollution.

Estuaries and Coasts↗

USGS2008

A simulation of historic hydrology and salinity in Everglades National Park: Coupling paleoecologic assemblage data with regression models

Restoration of Florida’s Everglades requires scientifically supportable hydrologic targets. This study establishes a restoration baseline by developing a method to simulate hydrologic and salinity conditions prior to anthropogenic changes. The method couples paleoecologic data on long-term historic ecosystem conditions with statistical models derived from observed meteorologic and hydrologic data that provide seasonal and annual variation. Results indicate that pre-drainage freshwater levels and hydroperiods in major sloughs of the Everglades were about 0.15 m higher and two to four times greater, respectively, on average compared to today’s values. Pre-drainage freshwater delivered to the wetlands and estuaries is estimated to be 2.5 to four times greater than the modern-day flow, and the largest deficit is during the dry season. In Florida Bay, salinity has increased between 5.3 and 20.1 with the largest differences in the areas near freshwater outflow points. These results suggest that additional freshwater flows to the Everglades are needed for restoration of the freshwater marshes of the Everglades and estuarine environment of Florida Bay, particularly near the end of the dry season.

Estuaries and Coasts↗

USGS2008

Short- and long-term response of deteriorating brackish marshes and open-water ponds to sediment enhancement by thin-layer dredge disposal

Artificial sediment enhancement using a thin layer of dredged material has been suggested as a means to increase elevation and create soil conditions conducive to increased marsh structure and function in deteriorating marshes. Using a chronosequence approach, we examined the effects of sediment enhancement in deteriorating marsh and open-water pond habitats located in six brackish marshes. Sediment enhancement of both marsh and interior pond sites had significant, immediate, and long-lasting effects on physical soil properties and nutrient status with increased bulk density and inorganic nitrogen. Vegetative cover and productivity response were minimal for deteriorating vegetated marshes with the short-term response data showing no significant impact of sediment enhancement and long-term trends indicating decreasing productivity over time. In contrast, trajectory models of vegetative cover and productivity in interior pond sites showed increases over time indicating that, for restoration of interior ponds, sediment enhancement may prove valuable. The use of trajectory models emphasizes the need for long-term monitoring to determine restoration success of projects. ?? 2008 U.S. Government.

Estuaries and Coasts↗

USGS2009

Defining optimal freshwater flow for oyster production: effects of freshet rate and magnitude of change and duration on eastern oysters and Perkinsus marinus infection

In coastal Louisiana, the development of large-scale freshwater diversion projects has led to controversy over their effects on oyster resources. Using controlled laboratory experiments in combination with a field study, we examined the effects of pulsed freshwater events (freshet) of different magnitude, duration, and rate of change on oyster resources. Laboratory and field evidence indicate that low salinity events (<5 psu) decreased Perkinsus marinus infection intensities. Furthermore, when salinity was low (<5 psu), parasite infection intensities continued to decrease even as temperatures exceeded 20°C. At the same time, oyster growth was positively correlated with salinity. To maximize oyster production, data indicate that both low and high salinity events will be necessary.

Estuaries and Coasts↗

USGS2009

Patterns and scales of phytoplankton variability in estuarine: Coastal ecosystems

Phytoplankton variability is a primary driver of chemical and biological dynamics in the coastal zone because it directly affects water quality, biogeochemical cycling of reactive elements, and food supply to consumer organisms. Much has been learned about patterns of phytoplankton variability within individual ecosystems, but patterns have not been compared across the diversity of ecosystem types where marine waters are influenced by connectivity to land. We extracted patterns from chlorophyll- a series measured at 84 estuarine–coastal sites, using a model that decomposes time series into an annual effect, mean seasonal pattern, and residual “events.” Comparisons across sites revealed a large range of variability patterns, with some dominated by a recurrent seasonal pattern, others dominated by annual (i.e., year-to-year) variability as trends or regime shifts and others dominated by the residual component, which includes exceptional bloom events such as red tides. Why is the partitioning of phytoplankton variability at these three scales so diverse? We propose a hypothesis to guide next steps of comparative analysis: large year-to-year variability is a response to disturbance from human activities or shifts in the climate system; strong seasonal patterns develop where the governing processes are linked to the annual climate cycle; and large event-scale variability occurs at sites highly enriched with nutrients. Patterns of phytoplankton variability are therefore shaped by the site-specific relative importance of disturbance, annual climatology, and nutrient enrichment.

Estuaries and Coasts↗

USGS2009

Peat accretion histories during the past 6,000 years in the marshes of the Sacramento-San Joaquin Delta, CA, USA

The purpose of this study was to determine how vertical accretion rates in marshes vary through the millennia. Peat cores were collected in remnant and drained marshes in the Sacramento–San Joaquin Delta of California. Cubic smooth spline regression models were used to construct age–depth models and accretion histories for three remnant marshes. Estimated vertical accretion rates at these sites range from 0.03 to 0.49 cm year −1 . The mean contribution of organic matter to soil volume at the remnant marsh sites is generally stable (4.73% to 6.94%), whereas the mean contribution of inorganic matter to soil volume has greater temporal variability (1.40% to 7.92%). The hydrogeomorphic position of each marsh largely determines the inorganic content of peat. Currently, the remnant marshes are keeping pace with sea level rise, but this balance may shift for at least one of the sites under future sea level rise scenarios.

California↗

USGS2010

Temperature inverted haloclines provide winter warm-water refugia for manatees in southwest Florida

Florida manatees ( Trichechus manatus latirostris ) overwintering in the Ten Thousand Islands and western Everglades have no access to power plants or major artesian springs that provide warm-water refugia in other parts of Florida. Instead, hundreds of manatees aggregate at artificial canals, basins, and natural deep water sites that act as passive thermal refugia (PTR). Monitoring at two canal sites revealed temperature inverted haloclines, which provided warm salty bottom layers that generally remained above temperatures considered adverse for manatees. At the largest PTR, the warmer bottom layer disappeared unless significant salt stratification was maintained by upstream freshwater inflow over a persistent tidal wedge. A detailed three-dimensional hydrology model showed that salinity stratification inhibited vertical convection induced by atmospheric cooling. Management or creation of temperature inverted haloclines may be a feasible and desirable option for resource managers to provide passive thermal refugia for manatees and other temperature sensitive aquatic species.

Florida↗

USGS2010

Source identification of Florida Bay's methylmercury problem: Mainland runoff versus atmospheric deposition and in situ production

The first advisory to limit consumption of Florida Bay fish due to mercury was issued in 1995. Studies done by others in the late 1990s found elevated water column concentrations of both total Hg (THg) and methylmercury (MeHg) in creeks discharging from the Everglades, which had its own recognized mercury problem. To investigate the significance of allochthonous MeHg discharging from the upstream freshwater Everglades, we collected surface water and sediment along two transects from 2000 to 2002. Concentrations of THg and MeHg, ranging from 0.36 ng THg/L to 5.98 ng THg/L and from <0.02 ng MeHg/L to 1.79 ng MeHg/L, were elevated in the mangrove transition zone when compared both to upstream canals and the open waters of Florida Bay. Sediment concentrations ranged from 5.8 ng THg/g to 145.6 ng THg/g and from 0.05 ng MeHg/g to 5.4 ng MeHg/g, with MeHg as a percentage of THg occasionally elevated in the open bay. Methylation assays indicated that sediments from Florida Bay have the potential to methylate Hg. Assessment of mass loading suggests that canals delivering stormwater from the northern Everglades are not as large a source as direct atmospheric deposition and in situ methylation, especially within the mangrove transition zone.

Florida↗

USGS2010

Evaluating ecological equivalence of created marshes: comparing structural indicators with stable isotope indicators of blue crab trophic support

This study sought to examine ecological equivalence of created marshes of different ages using traditional structural measures of equivalence, and tested a relatively novel approach using stable isotopes as a measure of functional equivalence. We compared soil properties, vegetation, nekton communities, and δ 13 C and δ 15 N isotope values of blue crab muscle and hepatopancreas tissue and primary producers at created (5-24 years old) and paired reference marshes in SW Louisiana. Paired contrasts indicated that created and reference marshes supported equivalent plant and nekton communities, but differed in soil characteristics. Stable isotope indicators examining blue crab food web support found that the older marshes (8 years+) were characterized by comparable trophic diversity and breadth compared to their reference marshes. Interpretation of results for the youngest site was confounded by the fact that the paired reference, which represented the desired end goal of restoration, contained a greater diversity of basal resources. Stable isotope techniques may give coastal managers an additional tool to assess functional equivalency of created marshes, as measured by trophic support, but may be limited to comparisons of marshes with similar vegetative communities and basal resources, or require the development of robust standardization techniques.

Estuaries and Coasts↗

USGS2010

Long-term trends in submersed aquatic vegetation (SAV) in Chesapeake Bay, USA, related to water quality

Chesapeake Bay supports a diverse assemblage of marine and freshwater species of submersed aquatic vegetation (SAV) whose broad distributions are generally constrained by salinity. An annual aerial SAV monitoring program and a bi-monthly to monthly water quality monitoring program have been conducted throughout Chesapeake Bay since 1984. We performed an analysis of SAV abundance and up to 22 environmental variables potentially influencing SAV growth and abundance (1984-2006). Historically, SAV abundance has changed dramatically in Chesapeake Bay, and since 1984, when SAV abundance was at historic low levels, SAV has exhibited complex changes including long-term (decadal) increases and decreases, as well as some large, single-year changes. Chesapeake Bay SAV was grouped into three broad-scale community-types based on salinity regime, each with their own distinct group of species, and detailed analyses were conducted on these three community-types as well as on seven distinct case-study areas spanning the three salinity regimes. Different trends in SAVabundance were evident in the different salinity regimes. SAV abundance has (a) continually increased in the low-salinity region; (b) increased initially in the medium-salinity region, followed by fluctuating abundances; and (c) increased initially in the high-salinity region, followed by a subsequent decline. In all areas, consistent negative correlations between measures of SAV abundance and nitrogen loads or concentrations suggest that meadows are responsive to changes in inputs of nitrogen. For smaller case-study areas, different trends in SAV abundance were also noted including correlations to water clarity in high-salinity case-study areas, but nitrogen was highly correlated in all areas. Current maximum SAV coverage for almost all areas remain below restoration targets, indicating that SAV abundance and associated ecosystem services are currently limited by continued poor water quality, and specifically high nutrient concentrations, within Chesapeake Bay. The nutrient reductions noted in some tributaries, which were highly correlated to increases in SAV abundance, suggest management activities have already contributed to SAV increases in some areas, but the strong negative correlation throughout the Chesapeake Bay between nitrogen and SAV abundance also suggests that further nutrient reductions will be necessary for SAV to attain or exceed restoration targets throughout the bay.

Estuaries and Coasts↗

USGS2011

The American crocodile in Biscayne Bay, Florida

Intensive crocodile monitoring programs conducted during the late 1970s and early 1980s in southern Florida resulted in an optimistic outlook for recovery of the protected species population. However, some areas with suitable crocodile habitat were not investigated, such as Biscayne Bay and the mainland shorelines of Barnes and Card Sounds. The objective of our study was to determine status and habitat use of crocodiles in the aforementioned areas. Spotlight and nesting surveys were conducted from September 1996 to December 2005. The results revealed annual increases in the number of crocodiles. Crocodiles preferred protected habitats such as canals and ponds. Fewer crocodiles were observed in higher salinity water. The distribution and abundance of crocodilians in estuaries is directly dependent on timing, amount, and location of freshwater delivery, providing an opportunity to integrate habitat enhancement with ongoing ecosystem restoration and management activities.

Florida↗

USGS2011

Sudden clearing of estuarine waters upon crossing the threshold from transport to supply regulation of sediment transport as an erodible sediment pool is depleted: San Francisco Bay, 1999

The quantity of suspended sediment in an estuary is regulated either by transport, where energy or time needed to suspend sediment is limiting, or by supply, where the quantity of erodible sediment is limiting. This paper presents a hypothesis that suspended-sediment concentration (SSC) in estuaries can suddenly decrease when the threshold from transport to supply regulation is crossed as an erodible sediment pool is depleted. This study was motivated by a statistically significant 36% step decrease in SSC in San Francisco Bay from water years 1991–1998 to 1999–2007. A quantitative conceptual model of an estuary with an erodible sediment pool and transport or supply regulation of sediment transport is developed. Model results confirm that, if the regulation threshold was crossed in 1999, SSC would decrease rapidly after water year 1999 as observed. Estuaries with a similar history of a depositional sediment pulse followed by erosion may experience sudden clearing.

California↗

USGS2011

Integrating scales of seagrass monitoring to meet conservation needs

We evaluated a hierarchical framework for seagrass monitoring in two estuaries in the northeastern USA: Little Pleasant Bay, Massachusetts, and Great South Bay/Moriches Bay, New York. This approach includes three tiers of monitoring that are integrated across spatial scales and sampling intensities. We identified monitoring attributes for determining attainment of conservation objectives to protect seagrass ecosystems from estuarine nutrient enrichment. Existing mapping programs provided large-scale information on seagrass distribution and bed sizes (tier 1 monitoring). We supplemented this with bay-wide, quadrat-based assessments of seagrass percent cover and canopy height at permanent sampling stations following a spatially distributed random design (tier 2 monitoring). Resampling simulations showed that four observations per station were sufficient to minimize bias in estimating mean percent cover on a bay-wide scale, and sample sizes of 55 stations in a 624-ha system and 198 stations in a 9,220-ha system were sufficient to detect absolute temporal increases in seagrass abundance from 25% to 49% cover and from 4% to 12% cover, respectively. We made high-resolution measurements of seagrass condition (percent cover, canopy height, total and reproductive shoot density, biomass, and seagrass depth limit) at a representative index site in each system (tier 3 monitoring). Tier 3 data helped explain system-wide changes. Our results suggest tiered monitoring as an efficient and feasible way to detect and predict changes in seagrass systems relative to multi-scale conservation objectives.

Massachusetts↗

USGS2011

Using multitemporal remote sensing imagery and inundation measures to improve land change estimates in coastal wetlands

Remote sensing imagery can be an invaluable resource to quantify land change in coastal wetlands. Obtaining an accurate measure of land change can, however, be complicated by differences in fluvial and tidal inundation experienced when the imagery is captured. This study classified Landsat imagery from two wetland areas in coastal Louisiana from 1983 to 2010 into categories of land and water. Tide height, river level, and date were used as independent variables in a multiple regression model to predict land area in the Wax Lake Delta (WLD) and compare those estimates with an adjacent marsh area lacking direct fluvial inputs. Coefficients of determination from regressions using both measures of water level along with date as predictor variables of land extent in the WLD, were higher than those obtained using the current methodology which only uses date to predict land change. Land change trend estimates were also improved when the data were divided by time period. Water level corrected land gain in the WLD from 1983 to 2010 was 1 km 2 year −1 , while rates in the adjacent marsh remained roughly constant. This approach of isolating environmental variability due to changing water levels improves estimates of actual land change in a dynamic system, so that other processes that may control delta development such as hurricanes, floods, and sediment delivery, may be further investigated.

Lousianna↗

USGS2011

Application of a weighted-averaging method for determining paleosalinity: a tool for restoration of south Florida's estuaries

A molluscan analogue dataset is presented in conjunction with a weighted-averaging technique as a tool for estimating past salinity patterns in south Florida’s estuaries and developing targets for restoration based on these reconstructions. The method, here referred to as cumulative weighted percent (CWP), was tested using modern surficial samples collected in Florida Bay from sites located near fixed water monitoring stations that record salinity. The results were calibrated using species weighting factors derived from examining species occurrence patterns. A comparison of the resulting calibrated species-weighted CWP (SW-CWP) to the observed salinity at the water monitoring stations averaged over a 3-year time period indicates, on average, the SW-CWP comes within less than two salinity units of estimating the observed salinity. The SW-CWP reconstructions were conducted on a core from near the mouth of Taylor Slough to illustrate the application of the method.

Florida↗

USGS2011

A hydrological budget (2002-2008) for a large subtropical wetland ecosystem indicates marine groundwater discharge accompanies diminished freshwater flow

Water budget parameters are estimated for Shark River Slough (SRS), the main drainage within Everglades National Park (ENP) from 2002 to 2008. Inputs to the water budget include surface water inflows and precipitation while outputs consist of evapotranspiration, discharge to the Gulf of Mexico and seepage losses due to municipal wellfield extraction. The daily change in volume of SRS is equated to the difference between input and outputs yielding a residual term consisting of component errors and net groundwater exchange. Results predict significant net groundwater discharge to the SRS peaking in June and positively correlated with surface water salinity at the mangrove ecotone, lagging by 1 month. Precipitation, the largest input to the SRS, is offset by ET (the largest output); thereby highlighting the importance of increasing fresh water inflows into ENP for maintaining conditions in terrestrial, estuarine, and marine ecosystems of South Florida.

Florida↗

USGS2011

Life histories, salinity zones, and sublethal contributions of contaminants to pelagic fish declines illustrated with a case study of San Francisco Estuary, California, USA

Human effects on estuaries are often associated with major decreases in abundance of aquatic species. However, remediation priorities are difficult to identify when declines result from multiple stressors with interacting sublethal effects. The San Francisco Estuary offers a useful case study of the potential role of contaminants in declines of organisms because the waters of its delta chronically violate legal water quality standards; however, direct effects of contaminants on fish species are rarely observed. Lack of direct lethality in the field has prevented consensus that contaminants may be one of the major drivers of coincident but unexplained declines of fishes with differing life histories and habitats (anadromous, brackish, and freshwater). Our review of available evidence indicates that examining the effects of contaminants and other stressors on specific life stages in different seasons and salinity zones of the estuary is critical to identifying how several interacting stressors could contribute to a general syndrome of declines. Moreover, warming water temperatures of the magnitude projected by climate models increase metabolic rates of ectotherms, and can hasten elimination of some contaminants. However, for other pollutants, concurrent increases in respiratory rate or food intake result in higher doses per unit time without changes in the contaminant concentrations in the water. Food limitation and energetic costs of osmoregulating under altered salinities further limit the amount of energy available to fish; this energy must be redirected from growth and reproduction toward pollutant avoidance, enzymatic detoxification, or elimination. Because all of these processes require energy, bioenergetics methods are promising for evaluating effects of sublethal contaminants in the presence of other stressors, and for informing remediation. Predictive models that evaluate the direct and indirect effects of contaminants will be possible when data become available on energetic costs of exposure to contaminants given simultaneous exposure to non-contaminant stressors.

California↗