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At least 127 records · Page 7Linked to original sources

USGS2000

Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay

This article presents an overview of recent findings from hydrodynamic research on circulation and mixing in the Sacramento-San Joaquin Delta (Delta) (Figure 1) and North San Francisco Bay (North Bay) (Figure 2). For the purposes of this article, North Bay includes San Pablo Bay, Carquinez Strait, and Suisun Bay. The findings presented are those gained from field studies carried out by the U.S. Geological Survey (USGS), as part of the Interagency Ecological Program (IEP), and Stanford University beginning about 1993. The premise behind these studies was that a basic understanding of circulation and mixing patterns in the Bay and Delta is an essential part of understanding how biota and water quality are affected by natural hydrologic variability, water appropriation, and development activities. Data collected for the field studies described in this article have significantly improved our understanding of Bay and Delta hydrodynamics. Measured flows ,in the Delta have provided valuable information on how water moves through the Delta's network of channels and how export pumping affects flows. Studies of the shallows and shallow-channel exchange processes conducted in Honker Bay have shown that the water residence time in Honker Bay is much shorter than previously reported (on the order of hours to several tidal cycles instead ofweeks). Suisun Bay studies have provided data on hydrodynamic transport and accumulation mechanisms that operate primarily in the channels. The Suisun Bay studies have caused us to revise our understanding of residual circulation in the channels of North Bay and of "entrapment" mechanisms in the low salinity zone. Finally, detailed tidal and residual (tidally averaged) time-scale studies of the mechanisms that control gravitational circulation in the estuary show that density-driven transport in the channels is governed by turbulence time-scale (seconds) interactions between the mean flow and stratification. The hydrodynamic research summarized in this article spans a range of estuarine environments (deep water channels to shallow water habitats and brackish water to freshwater) at time scales that range from seconds to years.

California↗

USGS2020

Storm impacts on phytoplankton community dynamics in lakes

In many regions across the globe, extreme weather events such as storms have increased in frequency, intensity, and duration due to climate change. Ecological theory predicts that such extreme events should have large impacts on ecosystem structure and function. High winds and precipitation associated with storms can affect lakes via short‐term runoff events from watersheds and physical mixing of the water column. In addition, lakes connected to rivers and streams will also experience flushing due to high flow rates. Although we have a well‐developed understanding of how wind and precipitation events can alter lake physical processes and some aspects of biogeochemical cycling, our mechanistic understanding of the emergent responses of phytoplankton communities is poor. Here we provide a comprehensive synthesis that identifies how storms interact with lake and watershed attributes and their antecedent conditions to generate changes in lake physical and chemical environments. Such changes can restructure phytoplankton communities and their dynamics, as well as result in altered ecological function (e.g., carbon, nutrient and energy cycling) in the short‐ and long‐term. We summarize the current understanding of storm‐induced phytoplankton dynamics, identify knowledge gaps with a systematic review of the literature, and suggest future research directions across a gradient of lake types and environmental conditions.

Global Change Biology↗

USGS2004

Nutritional ecology of ursids: A review of newer methods and management implications

The capability to understand the nutritional ecology of free-ranging bears has increased dramatically in the last 20 years. Advancements have occurred because (1) managers and biologists recognized the need to link habitat quality, productivity, and variability with bear movements, home ranges, and demographic parameters like reproductive output, survival, and population growth, and (2) several research teams are using new methods to build on the results of earlier field studies. Our ability to couple new field methods and empirical field research with controlled experiments using captive bears has been central to our increased understanding of bear nutrition. Newer methods include the use of stable isotopes to quantify assimilated diet and nutrient flows within ecosystems, bioelectrical impedance to measure body composition, and naturally occurring mercury to estimate fish intake. Controlled experiments using captive bears have been integral to developing methods, isolating specific variables by controlling the environment, and providing additional nutritional understanding necessary to interpret field observations. We review new methods and apply our increased understanding of bear nutritional ecology to 3 management issues: (1) the importance of salmon ( Oncorhynchus spp.) to brown bears ( Ursus arctos ) in the Pacific Northwest, (2) the consequences of the closure of the Yellowstone garbage dumps to grizzly bears, and (3) the relocation of problem bears.

Ursus↗

USGS2008

Description of Existing Data for Integrated Landscape Monitoring in the Puget Sound Basin, Washington

This report summarizes existing geospatial data and monitoring programs for the Puget Sound Basin in northwestern Washington. This information was assembled as a preliminary data-development task for the U.S. Geological Survey (USGS) Puget Sound Integrated Landscape Monitoring (PSILM) pilot project. The PSILM project seeks to support natural resource decision-making by developing a 'whole system' approach that links ecological processes at the landscape level to the local level (Benjamin and others, 2008). Part of this effort will include building the capacity to provide cumulative information about impacts that cross jurisdictional and regulatory boundaries, such as cumulative effects of land-cover change and shoreline modification, or region-wide responses to climate change. The PSILM project study area is defined as the 23 HUC-8 (hydrologic unit code) catchments that comprise the watersheds that drain into Puget Sound and their near-shore environments. The study area includes 13 counties and more than four million people. One goal of the PSILM geospatial database is to integrate spatial data collected at multiple scales across the Puget Sound Basin marine and terrestrial landscape. The PSILM work plan specifies an iterative process that alternates between tasks associated with data development and tasks associated with research or strategy development. For example, an initial work-plan goal was to delineate the study area boundary. Geospatial data required to address this task included data from ecological regions, watersheds, jurisdictions, and other boundaries. This assemblage of data provided the basis for identifying larger research issues and delineating the study-area boundary based on these research needs. Once the study-area boundary was agreed upon, the next iteration between data development and research activities was guided by questions about data availability, data extent, data abundance, and data types. This report is not intended as an exhaustive compilation of all available geospatial data, rather, it is a collection of information about geospatial data that can be used to help answer the suite of questions posed after the study-area boundary was defined. This information will also be useful to the PSILM team for future project tasks, such as assessing monitoring gaps, exploring monitoring-design strategies, identifying and deriving landscape indicators and metrics, and visual geographic communication. The two main geospatial data types referenced in this report - base-reference layers and monitoring data - originated from numerous and varied sources. In addition to collecting information and metadata about the base-reference layers, the data also were collected for project needs, such as developing maps for visual communication among team members and with outside groups. In contrast, only information about the data was typically required for the monitoring data. The information on base-reference layers and monitoring data included in this report is only as detailed as what was readily available from the sources themselves. Although this report may appear to lack consistency between data records, the varying degree of details contained in this report are merely a reflection of varying source detail. This compilation is just a beginning. All data listed also are being catalogued in spreadsheets and knowledge-management systems. Our efforts are continual as we develop a geospatial catalog for the PSILM pilot project.

Open-File Report↗

USGS2024

Accounting for missing ticks: Use (or lack thereof) of hierarchical models in tick ecology studies

Ixodid (hard) ticks play important ecosystem roles and have significant impacts on animal and human health via tick-borne diseases and physiological stress from parasitism. Tick occurrence, abundance, activity, and key life-history traits are highly influenced by host availability, weather, microclimate, and landscape features. As such, changes in the environment can have profound impacts on ticks, their hosts, and the spread of diseases. Researchers recognize that spatial and temporal factors influence activity and abundance and attempt to account for both by conducting replicate sampling bouts spread over the tick questing period. However, common field methods notoriously underestimate abundance, and it is unclear how (or if) tick studies model the confounding effects of factors influencing activity and abundance. This step is critical as unaccounted variance in detection can lead to biased estimates of occurrence and abundance. We performed a descriptive review to evaluate the extent to which studies account for the detection process while modeling tick data. We also categorized the types of analyses that are commonly used to model tick data. We used hierarchical models (HMs) that account for imperfect detection to analyze simulated and empirical tick data, demonstrating that inference is muddled when detection probability is not accounted for in the modeling process. Our review indicates that only 5 of 412 (1 %) papers explicitly accounted for imperfect detection while modeling ticks. By comparing HMs with the most common approaches used for modeling tick data (e.g., ANOVA), we show that population estimates are biased low for simulated and empirical data when using non-HMs, and that confounding occurs due to not explicitly modeling factors that influenced both detection and abundance. Our review and analysis of simulated and empirical data shows that it is important to account for our ability to detect ticks using field methods with imperfect detection. Not doing so leads to biased estimates of occurrence and abundance which could complicate our understanding of parasite-host relationships and the spread of tick-borne diseases. We highlight the resources available for learning HM approaches and applying them to analyzing tick data.

Maine↗

USGS2019

Review of and recommendations for monitoring contaminants and their effects in the San Francisco Bay−Delta

Legacy and current-use contaminants enter into and accumulate throughout the San Francisco Bay−Delta (Bay−Delta), and are present at concentrations with known effects on species important to this diverse watershed. There remains major uncertainty and a lack of focused research able to address and provide understanding of effects across multiple biological scales, despite previous and ongoing emphasis on the need for it. These needs are challenging specifically because of the established regulatory programs that often monitor on a chemical- by-chemical basis, or in which decisions are grounded in lethality-based endpoints. To best address issues of contaminants in the Bay−Delta, monitoring efforts should consider effects of environmentally relevant mixtures and sub- lethal impacts that can affect ecosystem health. These efforts need to consider the complex environment in the Bay−Delta including variable abiotic (e.g., temperature, salinity) and biotic (e.g., pathogens) factors. This calls for controlled and focused research, and the development of a multi-disciplinary contaminant monitoring and assessment program that provides information across biological scales. Information gained in this manner will contribute toward evaluating parameters that could alleviate ecologically detrimental outcomes. This review is a result of a Special Symposium convened at the University of California−Davis (UCD) on January 31, 2017 to address critical information needed on how contaminants affect the Bay−Delta. The UCD Symposium focused on new tools and approaches for assessing multiple stressor effects to freshwater and estuarine systems. Our approach is similar to the recently proposed framework laid out by the U.S. Environmental Protection Agency (USEPA) that uses weight of evidence to scale toxicological responses to chemical contaminants in a laboratory, and to guide the conservation of priority species and habitats. As such, we also aimed to recommend multiple endpoints that could be used to promote a multi-disciplinary understanding of contaminant risks in Bay−Delta while supporting management needs.

California↗

USGS2017

Navigating translational ecology: Creating opportunities for scientist participation

Interest in translational ecology (TE) – a research approach that yields useful scientific outcomes through ongoing collaboration between scientists and stakeholders – is growing among both of these groups. Translational ecology brings together participants from different cultures and with different professional incentives. We address ways to cultivate a culture of TE, such as investing time in understanding one another's decision context and incentives, and outline common entry points to translational research, such as working through boundary organizations, building place-based research programs, and being open to opportunities as they arise. We also highlight common institutional constraints on scientists and practitioners, and ways in which collaborative research can overcome these limitations, emphasizing considerations for navigating TE within current institutional frameworks, but also pointing out ways in which institutions are evolving to facilitate translational research approaches.

Frontiers in Ecology and the Environment↗

USGS2022

The gap between experts, farmers and non-farmers on perceived environmental vulnerability and the influence of values and beliefs

Science has played a mixed role in guiding conservation and sustainability-oriented decision-making by individuals, policymakers, institutions, and governments. Not all science-based conservation and sustainability initiatives that address issues facing humanity and ecosystems and global problems have gained public support. Conservation decisions and policy prescriptions are and may be based on perceptions about and experiences with the environment, local land use, and ecosystems that may not align with or be grounded in science or evidence from experts in the field. Values, beliefs, and perceptions associated with nature play a critical role in how individuals view biodiversity conservation, sustainability, and natural resource management . This study first examines the gap between experts (scientists and other field experts) and the public (farmers and non-farmers) about the state of water and land resources, wildlife and associated habitats, and aquatic biodiversity in the Smoky Hill River Watershed in western Kansas. Second, the study examines the role that values and beliefs play in shaping environmental perceptions for farmers and non-farmers. Analysis confirms that a gap between experts and farmers/non-farmers does exist, especially with respect to the state of the Ogallala Aquifer, playas, rivers and streams, lakes and reservoirs, native grasslands, wildlife habitats, farmland, native fish populations, and wildlife species. Ordered-logistic regression analyses, meanwhile, indicate that farmer and non-farmer perceptions about the state of the local environment are influenced by traditional and self-interested values, as well as environmental values and beliefs, but less so by religiosity and political ideology. Despite broad takeaways, results exhibited heterogeneity across the farmer and non-farmer subpopulations. If environmental professionals cannot align ecological data, stakeholders’ values/perceptions, and policies, then the existing body of technical research and management on sustainability in natural and social sciences may be of little value.

Journal of Environmental Management↗

USGS2010

Advances in the hydrogeochemistry and microbiology of acid mine waters

The last decade has witnessed a plethora of research related to the hydrogeochemistry and microbiology of acid mine waters and associated tailings and waste-rock waters. Numerous books, reviews, technical papers, and proceedings have been published that examine the complex bio-geochemical process of sulfide mineral oxidation, develop and apply geochemical models to site characterization, and characterize the microbial ecology of these environments. This review summarizes many of these recent works, and provides references for those investigating this field. Comparisons of measured versus calculated Eh and measured versus calculated pH for water samples from several field sites demonstrate the reliability of some current geochemical models for aqueous speciation and mass balances. Geochemical models are not, however, used to predict accurately time-dependent processes but to improve our understanding of these systems and to constrain possible processes that contribute to actual or potential water quality issues. Microbiological studies are demonstrating that there is much we have yet to learn about the types of different microorganisms and their function and ecology in mine-waste environments. A broad diversity of green algae, bacteria, archaea, yeasts, and fungi are encountered in acid mine waters, and a better understanding of their ecology and function may potentially enhance remediation possibilities as well as our understanding of the evolution of life.

International Geology Review↗

USGS2010

Spatial and stage-structured population model of the American crocodile for comparison of comprehensive Everglades Restoration Plan (CERP) alternatives

As part of the U.S. Geological Survey Priority Ecosystems Science (PES) initiative to provide the ecological science required during Everglades restoration, we have integrated current regional hydrologic models with American crocodile (Crocodylus acutus) research and monitoring data to create a model that assesses the potential impact of Comprehensive Everglades Restoration Plan (CERP) efforts on the American crocodile. A list of indicators was created by the Restoration Coordination and Verification (RECOVER) component of CERP to help determine the success of interim restoration goals. The American crocodile was established as an indicator of the ecological condition of mangrove estuaries due to its reliance upon estuarine environments characterized by low salinity and adequate freshwater inflow. To gain a better understanding of the potential impact of CERP restoration efforts on the American crocodile, a spatially explicit crocodile population model has been created that has the ability to simulate the response of crocodiles to various management strategies for the South Florida ecosystem. The crocodile model uses output from the Tides and Inflows in the Mangroves of the Everglades (TIME) model, an application of the Flow and Transport in a Linked Overland/Aquifer Density Dependent System (FTLOADDS) simulator. TIME has the capability to link to the South Florida Water Management Model (SFWMM), which is the primary regional tool used to assess CERP restoration scenarios. A crocodile habitat suitability index and spatial parameter maps that reflect salinity, water depth, habitat, and nesting locations are used as driving functions to construct crocodile finite rate of increase maps under different management scenarios. Local stage-structured models are integrated with a spatial landscape grid to display crocodile movement behavior in response to changing environmental conditions. Restoration efforts are expected to affect salinity levels throughout the habitat of the American crocodile. This modeling effort examines how CERP restoration alternatives will affect growth and survival rates of hatchling and juvenile crocodiles, hatchling dispersal to suitable nursery habitat, and relative abundance and distribution in response to changing salinity and water depth for all stage classes of crocodiles. The response of the American crocodile to restoration efforts will provide a quantifiable measure of restoration success. By applying the crocodile model to proposed restoration alternatives and predicting population responses, we can choose alternatives that approximate historical conditions, enhance habitat for multiple species, and identify future research needs.

Open-File Report↗

USGS2007

EAARL topography: Assateague Island National Seashore

This Web site contains 58 lidar-derived bare earth topography maps and GIS files for the Assateague Island National Seashore. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Maryland↗

USGS2007

EAARL topography: Thomas Stone National Historic Site

This Web site contains Lidar-derived topography (first return and bare earth) maps and GIS files for Thomas Stone National Historic Site in Maryland. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Maryland↗

USGS2007

EAARL topography – Gateway National Recreation Area, Sandy Hook Unit

This Web site contains Lidar-derived topography (bare earth) maps and GIS files for the Sandy Hook Unit within Gateway National Recreation Area in New Jersey. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

New York↗

USGS2007

EAARL topography: George Washington Birthplace National Monument

This Web site contains Lidar-derived topography (first return and bare earth) maps and GIS files for George Washington Birthplace National Monument in Virginia. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, the National Park Service (NPS), Northeast Coastal and Barrier Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Virginia↗

USGS2007

EAARL topography: Gulf Islands National Seashore: Mississippi

This Web site contains 30 lidar-derived bare earth topography maps and GIS files for the Gulf Islands National Seashore-Mississippi. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS) Gulf Coast Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Mississippi↗

USGS2007

EAARL Topography-Sagamore Hill National Historic Site

This Web site contains lidar-derived bare earth (BE) and first return (FR) topography maps and GIS files for the Sagamore Hill National Historic Site. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS), Northeast Coastal and Barrier Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Sagamore Hill National Historic Site↗

USGS2007

EAARL submarine topography: Florida Keys National Marine Sanctuary

This Web site contains 46 Lidar-derived submarine topography maps and GIS files for the Florida Keys National Marine Sanctuary. These Lidar-derived submarine topographic maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Oceanic and Atmospheric Administration (NOAA), Remote Sensing Division, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography within cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Florida↗

USGS2007

EAARL topography: Gulf Islands National Seashore: Florida

This Web site contains 33 lidar-derived bare earth topography maps and GIS files for the Gulf Islands National Seashore-Florida. These lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Park Service (NPS), Gulf Coast Network, Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Florida↗