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Science for the changing Great Basin

The U.S. Geological Survey (USGS), with its multidisciplinary structure and role as a federal science organization, is well suited to provide integrated science in the Great Basin of the western United States. A research strategy developed by the USGS and collaborating partners addresses critical management issues in the basin, including invasive species, status and trends of wildlife populations and communities, wildfire, global climate change, and riparian and wetland habitats. Information obtained through implementation of this strategy will be important for decision-making by natural-resource managers.

The Great Basin

Hydrology and geochemistry of aquifer and stream contamination related to acidic water in Pinal Creek basin near Globe, Arizona

Hydrologic and geochemical research has identified and characterized the physical and chemical processes that control the evolution and movement of metal contaminants in ground water beneath Miami Wash and lower Pinal Creek. The dissolution of calcite in the alluvial aquifer has slowed and neutralized part of the acidic plume, and the sorption of some metals such as nickel and copper to other solids in the subsurface has lowered concentrations of these metals in the ground water.

Arizona

Compilation of watershed models for tributaries to the Great Lakes, United States, as of 2010, and identification of watersheds for future modeling for the Great Lakes Restoration Initiative

As part of the Great Lakes Restoration Initiative (GLRI) during 2009–10, the U.S. Geological Survey (USGS) compiled a list of existing watershed models that had been created for tributaries within the United States that drain to the Great Lakes. Established Federal programs that are overseen by the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Army Corps of Engineers (USACE) are responsible for most of the existing watershed models for specific tributaries. The NOAA Great Lakes Environmental Research Laboratory (GLERL) uses the Large Basin Runoff Model to provide data for the management of water levels in the Great Lakes by estimating United States and Canadian inflows to the Great Lakes from 121 large watersheds. GLERL also simulates streamflows in 34 U.S. watersheds by a grid-based model, the Distributed Large Basin Runoff Model. The NOAA National Weather Service uses the Sacramento Soil Moisture Accounting model to predict flows at river forecast sites. The USACE created or funded the creation of models for at least 30 tributaries to the Great Lakes to better understand sediment erosion, transport, and aggradation processes that affect Federal navigation channels and harbors. Many of the USACE hydrologic models have been coupled with hydrodynamic and sediment-transport models that simulate the processes in the stream and harbor near the mouth of the modeled tributary. Some models either have been applied or have the capability of being applied across the entire Great Lakes Basin; they are (1) the SPAtially Referenced Regressions On Watershed attributes (SPARROW) model, which was developed by the USGS; (2) the High Impact Targeting (HIT) and Digital Watershed models, which were developed by the Institute of Water Research at Michigan State University; (3) the Long-Term Hydrologic Impact Assessment (L–THIA) model, which was developed by researchers at Purdue University; and (4) the Water Erosion Prediction Project (WEPP) model, which was developed by the National Soil Erosion Research Laboratory of the U.S. Department of Agriculture. During 2010, the USGS used the Precipitation-Runoff Modeling System (PRMS) to create a hydrologic model for the Lake Michigan Basin to assess the probable effects of climate change on future groundwater and surface-water resources. The Water Availability Tool for Environmental Resources (WATER) model and the Analysis of Flows In Networks of CHannels (AFINCH) program also were used to support USGS GLRI projects that required estimates of streamflows throughout the Great Lakes Basin. This information on existing watershed models, along with an assessment of geologic, soils, and land-use data across the Great Lakes Basin and the identification of problems that exist in selected tributary watersheds that could be addressed by a watershed model, was used to identify three watersheds in the Great Lakes Basin for future modeling by the USGS. These watersheds are the Kalamazoo River Basin in Michigan, the Tonawanda Creek Basin in New York, and the Bad River Basin in Wisconsin. These candidate watersheds have hydrogeologic, land-type, and soil characteristics that make them distinct from each other, but that are representative of other tributary watersheds within the Great Lakes Basin. These similarities in the characteristics among nearby watersheds will enhance the usefulness of a model by improving the likelihood that parameter values from a previously modeled watershed could reliably be used in the creation of a model of another watershed in the same region. The software program Hydrological Simulation Program–Fortran (HSPF) was selected to simulate the hydrologic, sedimentary, and water-quality processes in these selected watersheds. HSPF is a versatile, process-based, continuous-simulation model that has been used extensively by the scientific community, has the ongoing technical support of the U.S. Environmental Protection Agency and USGS, and provides a means to evaluate the effects that land-use changes or management practices might have on the simulated processes.

Great Lakes Basin

Management implications of the ecology of free-roaming horses in semiarid ecosystems of the western United States

Compared to other ungulates of North America, free - roaming horses ( Equus caballus ) possess a unique evolutionary history that has given rise to a distinct suite of behavioral, morphological, and physiological traits. Because of their unique combination of cecal digestion, an elongate head with flexible lips, and non-uniform use of the landscape, horses represent a unique disturbance agent in semi-arid ecosystems of the western United States . Consequently, it is inappropriate to assume that influences of horses on the structure, composition, function, and pattern of arid and semi-arid ecosystems will mirror influences of cattle or other artiodactyls. Although management areas for free - roaming horses occupy 18.6 million ha of land across western North America, we know relatively little about how western ecosystems and their components have responded to this uniquely managed ungulate. I draw on my research of horse habitats in the western Great Basin (U.S.A.) to examine predictions of horses ' unique influence, and advocate for continued research to refine our understanding of synecological relationships among horses and diverse ecosystem components in arid and semi-arid regions.

Wildlife Society Bulletin

Neotectonics of the offshore Oak Ridge fault near Ventura, southern California

The Oak Ridge fault is a large-offset, south-dipping reverse fault that forms the south boundary of the Ventura Basin in southern California. Previous research indicates that the Oak Ridge fault south of the town of Ventura has been inactive since 200-400 ka ago and that the fault tip is buried by ??? 1 km of Quaternary sediment. However, very high-resolution and medium-resolution seismic reflection data presented here show a south-dipping fault, on strike with the Oak Ridge fault, that is truncated at 80 m depth by an unconformity that is probably at the base of late Pleistocene and Holocene sediment. Furthermore, if vertically aligned features in seismic reflection data are eroded remnants of fault scarps, then a subsidiary fault within the Oak Ridge system deforms the shallowest imaged sediment layers. We propose that this subsidiary fault has mainly left-slip offset. These observations of Holocene slip on the Oak Ridge fault system suggest that revision of the earthquake hazard for the densely populated Santa Clara River valley and the Oxnard coastal plain may be needed.

Bulletin of the Seismological Society of America

Water resources data for West Virginia, water year 1979. Appendix - coal areas

Water resources data for the 1979 water year for coal regions of West Virginia consist of records of discharge and water quality of streams, wells, mines, and abandoned mine shafts; and water levels in wells and abandoned mine shafts. Section 1 consists of data obtained for the statewide Coal Hydrology Monitoring project and includes discharge and water-quality data collected during two sampling periods at 361 sites. Section 2 consists of data obtained for the Mining Effects Research project in five small basins in southwestern West Virginia during the period February 1976 to January 1980 and includes records of water quality for 53 stream sampling sites, 52 well sampling sites, 31 mine-discharge sampling sites, and 2 mine-shaft sampling sites; and water levels in 6 wells and 2 mine shafts.

West Virginia

Research-derived insights into surface geochemical hydrocarbon exploration

Research studies based on foreland basins (mainly in eastern Colorado) examined three surface geochemical exploration (SGE) methods as possible hydrocarbon (HC) exploration techniques. The first method, microbial soil surveying, has high potential as an exploration tool, especially hi development and enhanced recovery operations. Integrative adsorption, the second technique, is not effective as a quantitative SGE method because water, carbon dioxide, nitrous oxide, unsaturated hydrocarbons, and organic compounds are collected by the adsorbent (activated charcoal) much more strongly than covalently bonded microseeping Q-Cs thermogenic HCs. Qualitative comparisons (pattern recognition) of C8+ mass spectra cannot gauge HC gas microseepage that involves only the Q-Cs HCs. The third method, soil cakite surveying, also has no potential as an exploration tool. Soil calcite concentrations had patterns with pronounced areal contrasts, but these patterns had no geometric relationship to surface traces of established or potential production, that is, the patterns were random. Microscopic examination of thousands of soils revealed that soil calcite was an uncrystallized caliche coating soil particles. During its precipitation, caliche captures or occludes any gases, elements, or compounds in its immediate vicinity. Thus, increased signal intensity of some SGE methods should depend on increasing soil calcite concentrations. Analyses substantiate this hypothesis. Because soil calcite has no utility as a surface exploration tool, any surface method that depends on soil calcite has a diminished utility as an SGE tool. Isotopic analyses of soil calcites revealed carbonate carbon ??13C values of -4.0 to +2.07co (indicating a strong influence of atmospheric CO2) as opposed to expected values of-45 to -30%c if the carbonate carbon had originated from microbial oxidation of microseeping HC gases. These analyses confirm a surface origin for this soil calcite (caliche), which is not necessarily related to HC gas microseepage. This previously unappreciated pivotal role of caliche is hypothesized to contribute significantly to the poor and inconsistent results of some SGE methods.

AAPG Memoir

Correlations of turbidity to suspended-sediment concentration in the Toutle River Basin, near Mount St. Helens, Washington, 2010-11

Researchers at the U.S. Geological Survey, Cascades Volcano Observatory, investigated alternative methods for the traditional sample-based sediment record procedure in determining suspended-sediment concentration (SSC) and discharge. One such sediment-surrogate technique was developed using turbidity and discharge to estimate SSC for two gaging stations in the Toutle River Basin near Mount St. Helens, Washington. To provide context for the study, methods for collecting sediment data and monitoring turbidity are discussed. Statistical methods used include the development of ordinary least squares regression models for each gaging station. Issues of time-related autocorrelation also are evaluated. Addition of lagged explanatory variables was used to account for autocorrelation in the turbidity, discharge, and SSC data. Final regression model equations and plots are presented for the two gaging stations. The regression models support near-real-time estimates of SSC and improved suspended-sediment discharge records by incorporating continuous instream turbidity. Future use of such models may potentially lower the costs of sediment monitoring by reducing time it takes to collect and process samples and to derive a sediment-discharge record.

Washington

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota

About this volume The Williston Basin, which includes parts of Montana, North Dakota, and South Dakota in the United States, has been a leading domestic oil and gas producing area. To better understand the potential effects of energy development on environmental resources in the Williston Basin, the U.S. Geological Survey, in cooperation with the Bureau of Land Management, and in support of the needs identified by the Bakken Federal Executive Group (consisting of representatives from 13 Federal agencies and Tribal groups), began work to synthesize existing information on science topics to support management decisions related to energy development. This report is divided into four chapters (A–D). Chapter A provides an executive summary of the report and principal findings from chapters B–D. Chapter B provides a brief compilation of information regarding the history of energy development, physiography, climate, land use, demographics, and related studies in the Williston Basin. Chapter C synthesizes current information about water resources, identifies potential effects from energy development, and summarizes water resources research and information needs in the Williston Basin. Chapter D summarizes information about ecosystems, species of conservation concern, and potential effects to those species from energy development in the Williston Basin.

Montana, North Dakota, South Dakota

Water-quality modeling of Klamath Straits Drain recirculation, a Klamath River wetland, and 2011 conditions for the Link River to Keno Dam reach of the Klamath River, Oregon

The upper Klamath River and adjacent Lost River are interconnected basins in south-central Oregon and northern California. Both basins have impaired water quality with Total Maximum Daily Loads (TMDLs) in progress or approved. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey (USGS) and Watercourse Engineering, Inc., have conducted modeling and research to inform management of these basins for multiple purposes, including agriculture, endangered species protection, wildlife refuges, and adjacent and downstream water users. A water-quality and hydrodynamic model (CE-QUAL-W2) of the Link River to Keno Dam reach of the Klamath River for 2006–09 is one of the tools used in this work. The model can simulate stage, flow, water velocity, ice cover, water temperature, specific conductance, suspended sediment, nutrients, organic matter in bed sediment and the water column, three algal groups, three macrophyte groups, dissolved oxygen, and pH. This report documents two model scenarios and a test of the existing model applied to year 2011, which had exceptional water quality. The first scenario examined the water-quality effects of recirculating Klamath Straits Drain flows into the Ady Canal, to conserve water and to decrease flows from the Klamath Straits Drain to the Klamath River. The second scenario explicitly incorporated a 2.73×10 6 m 2 (675 acre) off-channel connected wetland into the CE-QUAL-W2 framework, with the wetland operating from May 1 through October 31. The wetland represented a managed treatment feature to decrease organic matter loads and process nutrients. Finally, the summer of 2011 showed substantially higher dissolved-oxygen concentrations in the Link-Keno reach than in other recent years, so the Link-Keno model (originally developed for 2006–09) was run with 2011 data as a test of model parameters and rates and to develop insights regarding the reasons for the improved water-quality conditions.

Oregon

Determination of hydrologic pathways during snowmelt for alpine/subalpine basins, Rocky Mountain National Park, Colorado

Alpine/subalpine ecosystems in Rocky Mountain National Park may be sensitive to atmospherically derived acidic deposition. Two‐ and three‐component hydrograph separation analyses and correlation analyses were performed for six basins to provide insight into streamflow generation during snowmelt and to assess basin sensitivity to acidic deposition. Three‐component hydrograph separation results for five basins showed that streamflow contained from 42 to 57% direct snowmelt runoff, 37 to 54% subsurface water, and 4 to 13% direct rain runoff for the May through October 1994 study period. Subsurface contributions were 89% of total flow for the sixth basin. The reliability of hydrograph separation model assumptions was explored. Subsurface flow was positively correlated with the amount of surficial material in a basin and was negatively correlated with basin slope. Basins with extensive surficial material and shallow slopes are less susceptible to ecosystem changes due to acidic deposition than basins with less surficial material and steeper slopes. This study was initiated to expand the intensive hydrologic research that has been conducted in Loch Vale basin to a more regional scale.

Water Resources Research

Multiscale sagebrush rangeland habitat modeling in the Gunnison Basin of Colorado

North American sagebrush-steppe ecosystems have decreased by about 50 percent since European settlement. As a result, sagebrush-steppe dependent species, such as the Gunnison sage-grouse, have experienced drastic range contractions and population declines. Coordinated ecosystem-wide research, integrated with monitoring and management activities, is needed to help maintain existing sagebrush habitats; however, products that accurately model and map sagebrush habitats in detail over the Gunnison Basin in Colorado are still unavailable. The goal of this project is to provide a rigorous large-area sagebrush habitat classification and inventory with statistically validated products and estimates of precision across the Gunnison Basin. This research employs a combination of methods, including (1) modeling sagebrush rangeland as a series of independent objective components that can be combined and customized by any user at multiple spatial scales; (2) collecting ground measured plot data on 2.4-meter QuickBird satellite imagery in the same season the imagery is acquired; (3) modeling of ground measured data on 2.4-meter imagery to maximize subsequent extrapolation; (4) acquiring multiple seasons (spring, summer, and fall) of Landsat Thematic Mapper imagery (30-meter) for optimal modeling; (5) using regression tree classification technology that optimizes data mining of multiple image dates, ratios, and bands with ancillary data to extrapolate ground training data to coarser resolution Landsat Thematic Mapper; and 6) employing accuracy assessment of model predictions to enable users to understand their dependencies. Results include the prediction of four primary components including percent bare ground, percent herbaceous, percent shrub, and percent litter, and four secondary components including percent sagebrush (Artemisia spp.), percent big sagebrush (Artemisia tridentata), percent Wyoming sagebrush (Artemisia tridentata wyomingensis), and shrub height (centimeters). Results were validated with an independent accuracy assessment, with root mean square error values ranging from 3.5 (percent big sagebrush) to 10.8 (percent bare ground) at the QuickBird scale, and from 4.5 (percent Wyoming sagebrush) to 12.4 (percent herbaceous) at the full Landsat scale. These results offer significant improvement in sagebrush ecosystem quantification across the Gunnison Basin, and also provide maximum flexibility to users to employ for a wide variety of applications. Further refinement of these remote sensing component predictions in the future will be most likely achieved by focusing on more extensive ground plot sampling, employing new high and moderate-resolution satellite sensors that offer additional spectral bands for vegetation discrimination, and capturing more dates of satellite imagery to better represent phenological variation.

Colorado

Collaborations, research, and adaptive management to address nonnative Phragmites australis in the Great Lakes Basin

Phragmites australis , also known as common reed, is a native North American wetland grass that has grown in North America for thousands of years. More recently, a nonnative, invasive variety of Phragmites from Eurasia is rapidly invading wetlands across the continental United States and other parts of North America, where it negatively impacts humans and the environment. U.S. Geological Survey scientists, funded by the Great Lakes Restoration Initiative, are leading innovative efforts to improve management of nonnative Phragmites in the Great Lakes Basin.

Great Lakes Basin

Water resources inventory of the Las Cienegas National Conservation Area, southeastern Arizona

The Las Cienegas National Conservation Area was established by the Las Cienegas National Conservation Area Establishment Act of 1999 (Public Law 106–538) and is managed by the Bureau of Land Management. Located in southeastern Arizona, the conservation area contains more than 45,000 acres of rolling grassland, wetlands, and woodlands surrounded by isolated mountain ranges that are part of the Madrean archipelago. This report describes the surface-water and groundwater resources within, and hydrologically connected to, the conservation area. Two primary aquifers have been identified within the Las Cienegas National Conservation Area: a Quaternary alluvial aquifer and a Miocene to Pliocene basin-fill aquifer. The Quaternary alluvial aquifer consists of Quaternary saturated stream alluvium along Cienega Creek and its major tributaries. This aquifer provides the water necessary for base flow in the perennial stream reaches that support aquatic life and for wetland and riparian habitat along the stream courses. Wells and piezometers completed in the Quaternary alluvial aquifer show both seasonal and daily water-level fluctuation patterns, as well as responses to flood flows in Cienega Creek. The basin-fill aquifer, in contrast, consists chiefly of Miocene to Pliocene alluvium within a sedimentary basin that is at least 4,800 feet deep. This aquifer is developed for anthropogenic uses more often than the Quaternary alluvial aquifer is developed. Generally, water levels in wells completed in the basin-fill aquifer have gradually declined a few feet between 2011, when measurements began, and 2022, when this report was written. Most water-chemistry samples available from the basin-fill aquifer had either a sodium-bicarbonate or calcium-bicarbonate water type. Previous research has shown that most recharge to the basin-fill aquifer likely comes from mountain-front and mountain-block recharge. Research further shows that this aquifer likely provides most of the recharge to the Quaternary alluvial aquifer. Because no production wells completed in bedrock exist within the conservation area, little is known about the hydraulic properties of the bedrock therein, but usable quantities of water can likely be produced from places where the bedrock has highly developed joint or fracture systems. During 2006–2021, the average combined length of measured perennial stream reaches within the main part of the Las Cienegas National Conservation Area was 6.35 miles. The average annual base flow of Cienega Creek during 2002–2021, estimated with the Standard Base-Flow Index method using data from a streamgage within the conservation area, was 0.62 cubic feet per second. Monthly mean streamflow measured at this streamgage for the same period ranged from a low of 0.29 cubic feet per second (in June) to a high of 9.8 cubic feet per second (in July). The July average is heavily influenced by a flood that occurred in July 2021; the median July streamflow for 2002–2021 is just 0.84 cubic feet per second. Periods with no daily flow are not uncommon at this gage during late May and June.

Arizona

Degree of reduction of sediments in the East Texas basin as an index of source beds

The research project on source beds, sponsored jointly by the U. S. Geological Survey and the American Petroleum Institute, for the past 18 months has undertaken a study of the degree of reduction as an index of source beds. As indicated in a previous paper on this same subject presented before the Institute at the Los Angeles meeting, this index has to be tested in several petroliferous provinces before its value can be definitely ascertained. Thus far it has been found to prevail in two petroliferous regions, viz., the Rocky Mountains and the Mid Continent; as sediments regarded as source beds in these areas have been observed commonly to have a relatively high degree of reduction. In this paper this relationship is extended to the East Texas basin, as most of the sediments associated with oil zones there in general have been found to have a comparatively high degree of reduction. The relationship, as in other areas, however, has not been observed to hold invariably. Each succeeding area in which the relationship is found to prevail strengthens the probability that it is real and not anomalous. If it is found to hold in the three remaining petroliferous provinces that are now being studied, viz., California, Gulf Coast, and Appalachian, the probability will be strong that it is a true relationship, with the result that it can be recommended to geologists for consideration in prospecting for oil.

Conference Paper

Maps showing distribution of the Middle Cretaceous unconformity in the eastern Gulf of Mexico

Several theories on the origin of the Gulf of Mexico basin have been introduced by various researchers (Beloussov, 1970; Freeland and Dietz, 1971; Malfait and Dinkelman, 1972; Wood and Walper, 1974; Pilger, 1978; Buffler and others, 1980; Dickinson and Coney, 1980; Gose and others, 1980; Schmidt-Effing, 1980; Walper, 1980; Schlager and others, 1984). Although no final agreement has been reached, one prominent geologic feature is generally recognized. The early evolution of the basin ended with a major middle Cretaceous event resulting in a Gulf-wide unconformity referred to as the middle Cretaceous unconformity (MCU). This event represents a major shift from Early Cretaceous shallow-water bank sedimentation to Late Cretaceous deeper water carbonates (Worzel and others, 1973; Mitchum, 1978). Seismic data collected by the U.S. Geological Survey and the University of Texas Marine Science Institute, Galveston Geophysics Laboratory (UTMSI-GGL) were used to map the MCU and its relationship to the deep stratigraphy and structure of the eastern Gulf basin east of long 90° W. In addition, data from the Deep Sea Drilling Project (DSDP) in the southeastern Gulf and along the Campeche Escarpment and dredge samples collected by Schlager and others (1984) from the Florida Escarpment provide an age for the MCU (Cenomanian, 97 m. y. ) and a detailed lithological record. This report emphasizes the salt diapirs, pillows, and ridges in the northeastern Gulf of Mexico because of the profound effect these geologic structures have on the MCU. Salt locations are shown on the isopach of post-MCU sediments (fig. 1). A second map shows pre-middle Cretaceous outcrops terminated by the MCU along the Florida Escarpment, the southeastern Gulf, and the Campeche Escarpment (fig. 2).

Miscellaneous Field Studies Map

Behavior patterns and fates of adult steelhead, Chinook salmon, and coho salmon released into the upper Cowlitz River Basin, 2005–09 and 2012, Washington

A multiyear radiotelemetry evaluation was conducted to monitor adult steelhead ( Oncorhynchus mykiss ), Chinook salmon ( O. tshawytscha ), and coho salmon ( O. kisutch ) behavior and movement patterns in the upper Cowlitz River Basin. Volitional passage to this area was eliminated by dam construction in the mid-1960s, and a reintroduction program began in the mid-1990s. Fish are transported around the dams using a trap-and-haul program, and adult release sites are located in Lake Scanewa, the uppermost reservoir in the system, and in the Cowlitz and Cispus Rivers. Our goal was to estimate the proportion of tagged fish that fell back downstream of Cowlitz Falls Dam before the spawning period and to determine the proportion that were present in the Cowlitz and Cispus Rivers during the spawning period. Fallback is important because Cowlitz Falls Dam does not have upstream fish passage, so fish that pass the dam are unable to move back upstream and spawn. A total of 2,051 steelhead and salmon were tagged for the study, which was conducted during 2005–09 and 2012, and 173 (8.4 percent) of these regurgitated their transmitter prior to, or shortly after release. Once these fish were removed from the dataset, the final number of fish that was monitored totaled 1,878 fish, including 647 steelhead, 770 Chinook salmon, and 461 coho salmon. Hatchery-origin (HOR) and natural-origin (NOR) steelhead, Chinook salmon, and coho salmon behaved differently following release into Lake Scanewa. Detection records showed that the percentage of HOR fish that moved upstream and entered the Cowlitz River or Cispus River after release was relatively low (steelhead = 38 percent; Chinook salmon = 67 percent; coho salmon = 41 percent) compared to NOR fish (steelhead = 84 percent; Chinook salmon = 82 percent; coho salmon = 76 percent). The elapsed time from release to river entry was significantly lower for NOR fish than for HOR fish for all three species. Tagged fish entered the Cowlitz River in greater proportions than the Cispus River, regardless of origin. We found that 23–47 percent of the HOR fish entered the Cowlitz River and 12–38 percent entered the Cispus River. Similarly, 67–70 percent of the NOR fish entered the Cowlitz River and 38–66 percent entered the Cispus River. These behavioral differences translated into similar differences in fates during the spawning periods as higher percentages of tagged fish were assigned Cowlitz River fates than Cispus River fates. Fallback rates were affected by fish origin and release site. Overall, 12 percent of steelhead, 19 percent of Chinook salmon, and 8 percent of coho salmon fell back downstream of Cowlitz Falls Dam prior to spawning. Fallback rates were lower for fish that were released in the Cowlitz River or the Cispus River than for reservoir-released fish, but statistical comparisons were not robust because of small sample sizes at the river release sites. Fallback rates for fish released at the river release sites were 10 percent lower for steelhead, 4 percent lower for Chinook salmon, and 9 percent lower for coho salmon than for reservoir-released fish. However, fallback rates also were different between HOR and NOR fish. Fallback rates were significantly higher for HOR reservoir-released fish than for NOR reservoir-released fish. This study provided data that were insightful for understanding behavior and movement patterns in the upper Cowlitz River Basin and yielded estimates of fallback rates and fish fates that may be useful for fishery managers in the years to come. Studies from other systems have shown that factors such as prespawn mortality and fallback have resulted in substantial losses to spawning populations where trap-and-haul programs are being used as a restoration tool. Future research in the upper Cowlitz River Basin may use additional telemetry studies, genetic analyses, and spawning ground surveys to provide answers for new questions and to continue to monitor the progress of the reintroduction effort.

Washington

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2023 through December 2023

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to the Columbia Basin Fish and Wildlife Program (2008) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2023, we PIT-tagged 1,294 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 parr were at high abundance due to a strong spawning run in 2023 (estimate of 814 adults from September snorkel survey compared to 22-year median of 450; Charlie Cochran, WDFW Fish Biologist, personal commun., 2022), but age-1 parr abundance was low following poor spawner numbers in 2022 (estimate of 159 adults from September snorkel survey). An additional 189 age-2 or older parr were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during seven of the past nine years and have exceeded 97% at our primary PTIS in the Wind River during eight of the past nine years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek, where it had potential negative effects on Steelhead Trout populations due to hydrologic impairment, increased temperatures, and adult passage issues because of an inadequate fish ladder. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that often most fish from a cohort that migrate downstream will do so at age-1 for additional rearing downstream of their natal areas. It is unknown if this is ingrained behavior or a result of lack of habitat capacity. We have estimated that from 15 to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall: this is especially pronounced in the upper Wind River portion of the watershed. These findings raise questions about preferred parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are part of the long-term goals of this study as active and passive habitat restoration actions occur. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed. Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Non-native Salvelinus fontinalis (Brook Trout) are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022, though variable, have generally declined. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin informs research and tracking of many populations and habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

Washington