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Great Lakes lake trout thiamine monitoring program annual report

The U.S. Geological Survey’s Great Lakes Science Center (GLSC), Eastern Ecological Science Center, and Columbia Environmental Research Center (CERC), and the State University of New York (SUNY) Brockport have conducted in collaboration with partner agencies a cooperative program to monitor thiamine concentrations in lake trout eggs since the late 1990s. In 2021, egg thiamine concentrations were highly variable at each sampling site. No eggs samples with thiamine concentrations less than the 4 nmol/g threshold recommended for successful lake trout reproduction were collected in Lakes Superior, Huron, Erie, and Champlain. In contrast, every site in Lakes Michigan and Ontario and Cayuga Lake had some lake trout eggs below 4 nmol/g. Time series of mean lake trout egg thiamine concentrations showed high temporal and spatial variability within the Great Lakes region.

Great Lakes↗

Designing a high-frequency nutrient and biogeochemical monitoring network for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the third in a series of three reports that provide information about how high-frequency (HF) nutrient monitoring may be used to assess nutrient inputs and dynamics in the Sacramento–San Joaquin Delta, California (Delta). The purpose of this report is to provide the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high-priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta. For three example network designs, we assess how they would address high-priority questions that have been identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015). This report, along with the other two reports of this series (Kraus and others, 2017; Downing and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for both fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions. The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the north Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently (2017) operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales, such as within a few hours, but also significant variability at longer timescales such as months or years. This high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in Delta tidal environments.

California↗

Zeolites in the Pine Ridge Indian Reservation, South Dakota

Zeolites of possible commercial value occur in the Brule Formation of Oligocene age and the Sharps Formation (Harksen, 1961) of Miocene age which crop out in a wide area in the northern part of the Pine Ridge Indian Reservation. The thickness of the zeolite-bearing Interval and the extent of areas within the Interval which contain significant amounts of zeolites are far greater than was expected prior to this investigation. The shape of the zeolite-bearing Interval is tabular and the dimensions of Its exposure are roughly 10 ml x 200 mi x 150 ft (16 km x 160 km x 45 m) thick. Within the study area, there are tracts in which the zeolite resource potential is significant (see pl. 2). This report is intended to inform the Oglala Sioux Tribe of some of the most promising zeolite occurrences. Initial steps can then be taken by the Tribe toward possible development of the resources, should they wish to do so. The data contained herein identify areas of high zeolite potential, but are not adequate to establish economic value for the deposits. If development is recommended by the tribal government, we suggest that the tribal government contact companies involved in research and production of natural zeolites and provide them with the data in this report.

Open-File Report↗

Synthesis of data from high-frequency nutrient and associated biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the second in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). The purpose of this report is to synthesize the data available from a nutrient and water-quality HF (about every 15 minutes) monitoring network operated by the U.S. Geological Survey in the northern Delta. In this report, we describe the network and focus on the purpose of each station. We then present and discuss the available data, at various timescales—first at the monthly, seasonal, and inter-annual timescales, and second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate-N concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. Resolving this variability is made possible by the HF data, with the largest variability caused by storms, tides, and diel biological processes. Given this large temporal variability, calculations of cumulative nutrient fluxes (for example, daily, monthly, or annual loads) is difficult without HF data. For example, in the Cache Slough, calculation of the annual load without the tidal variability resulted in a 30 percent underestimation of the true annual load value. We conclude that HF measurements are important for accurate determination of fluxes and loads in tidal environments, but, more importantly, provide important insights into processes and rates of nutrient cycling. This report, along with the other two reports of this series (Bergamaschi and others, 2017; Kraus, Bergamaschi, and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus, Bergamaschi, and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions. The third report in the series (Bergamaschi and others, 2017) provides the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high‑priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta, proposed to address high-priority questions identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).

California↗

Re-evaluation and extension of the scope of elements in US Geological Survey Standard Reference Water Samples

More than 100 US Geological Survey (USGS) Standard Reference Water Samples (SRWSs) were analyzed for numerous trace constituents, including Al, As, B, Ba, Be, Bi, Br, Cd, Cr, Co, Cu, I, Fe, Pb, Li, Mn, Mo, Ni, Rb, Sb, Se, Sr, Te, Tl, U, V, Zn and major elements (Ca, Mg, Na, SiO2, SO4, Cl) by inductively coupled plasma mass spectrometry and inductively coupled plasma atomic emission spectrometry. In addition, 15 USGS SRWSs and National Institute of Standards and Technology (NIST) standard reference material (SRM) 1641b were analyzed for mercury using cold vapor atomic fluorescence spectrometry. Also USGS SRWS Hg-7 was analyzed using isotope dilution-inductively coupled plasma mass spectrometry. The results were compared with the reported certified values of the following standard reference materials: NIST SRM 1643a, 1643b, 1643c and 1643d and National Research Council of Canada Riverine Water Reference Materials for Trace Metals SLRS-1, SLRS-2 and SLRS-3. New concentration values for trace and major elements in the SRWSs, traceable to the certified standards, are reported. Additional concentration values are reported for elements that were neither previously published for the SRWSs nor traceable to the certified reference materials. Robust statistical procedures were used that were insensitive to outliers. These data can be used for quality assurance/quality control purposes in analytical laboratories.

Analyst↗

An international borderland of concern: Conservation of biodiversity in the Lower Rio Grande Valley

The Lower Rio Grande Valley (LRGV) of southern Texas is located on the United States-Mexico borderland and represents a 240-kilometer (150-mile) linear stretch that ends at the Gulf of Mexico. The LRGV represents a unique transition between temperate and tropical conditions and, as such, sustains an exceptionally high diversity of plants and animals—some of them found in few, or no other, places in the United States. Examples include Leopardus pardalis albescens (northern ocelot) and Falco femoralis septentrionalis (northern aplomado falcon)—both endangered in the United States and emblematic of the LRGV. The U.S. Fish and Wildlife Service (USFWS) manages three national wildlife refuges (Santa Ana, Lower Rio Grande Valley, and Laguna Atascosa) that together make up the South Texas Refuge Complex, which actively conserves biodiversity in about 76,006 hectares (187,815.5 acres) of native riparian and upland habitats in the LRGV. These diminished habitats harbor many rare, threatened, and endangered species. This report updates the widely used 1988 USFWS biological report titled “Tamaulipan Brushland of the Lower Rio Grande Valley of South Texas: Description, Human Impacts, and Management Options” by synthesizing nearly 400 peer-reviewed scientific publications that have resulted from biological and sociological research conducted specifically in the four Texas counties of the LRGV in the past nearly 30 years. This report has three goals: (1) synthesize scientific insights gained since 1988 related to the biology and management of the LRGV and its unique biota, focusing on flora and fauna of greatest conservation concern; (2) update ongoing challenges facing Federal and State agencies and organizations that focus on conservation or key natural resources in the LRGV; and (3) redefine conservation opportunities and land-acquisition strategies that are feasible and appropriate today, given the many new and expanding constraints that challenge conservation activities in the LRGV. The LRGV faces every contemporary conservation challenge of the 21st century, but ongoing human population growth and its associated demands, international border issues, and oil, gas, and alternative energy development dominate impacts that affect conservation in the LRGV. Continued careful syntheses of existing and future information collected in the LRGV are needed on many biological and sociological topics to guide conservation activities. Quick response will no doubt be necessary to face contemporary and difficult-to-predict challenges such as climate change, diminished water availability and quality, spread of invasive species, and habitat loss and fragmentation. Complexities of a guarded international borderland add pressure to small patches of native habitat that remain in many places of the LRGV, particularly along the Rio Grande. Large connected corridors of restored native habitat could be the best option to maintain, and even enhance, the exceptional biodiversity of the LRGV in the face of exceptional human demand.

Texas↗

Hyperspectral remote sensing of vegetation and agricultural crops: Knowledge gain and knowledge gap after 40 years of research

The focus of this chapter was to summarize the advances made over last 40+ years, as reported in various chapters of this book, in understanding, modeling, and mapping terrestrial vegetation using hyperspectral remote sensing (or imaging spectroscopy) using sensors that are ground-based, truck-mounted, airborne, and spaceborne. As we have seen in various chapters of this book and synthesized in this chapter, the advances made include: (a) significantly improved characterization and modeling of a wide array of biophysical and biochemical properties of vegetation, (b) ability to discriminate plant species and vegetation types with high degree of accuracies (c) reducing uncertainties in determining net primary productivity or carbon assessments from terrestrial vegetation, (d) improved crop productivity and water productivity models, (b), (e) ability to access stress resulting from causes such as management practices, pests and disease, water deficit or excess; , and (f) establishing more sensitive wavebands and indices to detect plant water\moisture content. The advent of spaceborne hyperspectral sensors (e.g., NASA’s Hyperion, ESA’s PROBA, and upcoming NASA’s HyspIRI) and numerous methods and techniques espoused in this book to overcome Hughes phenomenon or data redundancy when handling large volumes of hyperspectral data have generated tremendous interest in advancing our hyperspectral applications knowledge base over larger spatial extent such as region, nation, continent, and globe.

Book chapter↗

Sonoran Desert: Fragile Land of Extremes

'Sonoran Desert: Fragile Land of Extremes' shows how biologists with the U.S. Geological Survey work with other scientists in an effort to better understand native plants and animals such as desert tortoises, saguaro cacti, and Gila monsters. Much of the program was shot in and around Saguaro National Park near Tucson, Arizona. Genetic detective work, using DNA, focuses on understanding the lives of tortoises. Studies of saguaros over many decades clarify how these amazing plants reproduce and thrive in the desert. Threats from fire, diseases in tortoises, and a growing human population motivate the scientists. Their work to identify how these organisms live and survive is a crucial step for the sound management of biological resources on public lands. This 28-minute program, USGS Open-File Report 03-305, was shot entirely in high definition video and produced by the USGS Western Ecological Research Center and Southwest Biological Science Center; produced and directed by Stephen Wessells, Western Region Office of Communications.

Open-File Report↗

Exploring the barriers for people taking protective actions during the 2012 and 2015 New Zealand shakeout drills

To reduce future earthquake injuries and casualties, it is important that people understand how their behavior, during and immediately following earthquake shaking, exposes them to increased risk of injury or death. Research confirms that protective actions can reduce injuries and that prior training can help prepare people to take appropriate actions. In this paper, we examine barriers to participation in the ShakeOut drills in New Zealand. Through citizen science research, volunteers observed people performing the drills in 2012 and 2015. Observers reported how long it took to perform the drill and why they thought some people may not have completed it. Our findings illustrate that children, elderly, and those with both mental and physical disabilities struggled with the drill. Furthermore, embarrassment was a reported leading cause for non-participation; we recommend more inclusive messaging to address potential causes of embarrassment.

International Journal of Disaster Risk Reduction↗

Habitat use by subyearling Chinook and coho salmon in Lake Ontario tributaries

The habitat use of subyearling Chinook salmon ( Oncorhynchus tshawytscha ) and coho salmon ( Oncorhynchus kisutch ) was examined in three tributaries of Lake Ontario. A total of 1781 habitat observations were made on Chinook salmon (698) and coho salmon (1083). During both spring and fall, subyearling coho salmon used pool habitat with abundant cover. During spring, principal component analysis revealed that water depth was the most important variable governing subyearling Chinook salmon habitat use. Substrate materials used by Chinook salmon in the spring and coho salmon in the fall were significantly smaller than were present on average within the study reaches. When the two species occurred sympatrically during spring they exhibited similar habitat selection. Although the habitat used by coho salmon in Lake Ontario tributaries was consistent with observations of habitat use in their native range, higher water velocities were less important to Chinook salmon than has previously been reported.

New York↗

Observations on twinning in the sea lamprey (Petromyzon marinus) in the laboratory

Forty-five sets of separate, normal twins were produced from four portions of the eggs from one female sea lamprey ( Petromyzon marinus ) each fertilized by a different male. The percentage of twinning in the different groups of embryos ranged from 1.0 to 1.7. Although the development of some of the twins was slightly slower than average, that of most was within the normal range for sea lamprey embryos. The twins were smaller than non-twins, and one twin was usually smaller than the other. Although the discovery of Siamese twins in fish is not uncommon, separate, normal twins have seldom been reported.

Journal of Great Lakes Research↗

Agri-tourism and rural outdoor recreation in the US: A framework for understanding economic and employment dynamics

Agri-tourism and rural outdoor recreation are positioned at an important intersection between agricultural, natural resource, economic development and rural issues. This chapter summarizes some of the important dynamics of these sectors, including the role of land use, regional drivers, motivations for farmers and travelers, and economic impacts. As a means to illustrate several key points, highlights of several case studies, papers and reports about rural outdoor and agricultural tourism are summarized. To conclude, a research agenda for those interested in the role of tourism to rural economies is framed.

Book chapter↗

Nodal seismograph recordings of the 2019 Ridgecrest Earthquake Sequence

The 2019 Ridgecrest, California earthquake sequence included M w 6.4 and Mw 7.1 earthquakes that occurred on successive days beginning on 4 July 2019. These two largest earthquakes of the sequence occurred on orthogonal faults that ruptured the Earth’s surface. To better evaluate the 3D subsurface fault structure, ( P - and S -wave) velocity, 3D and temporal variations in seismicity, and other important aspects of the earthquake sequence, we recorded aftershocks and ambient noise using up to 461 three-component nodal seismographs for about two months, beginning about one day after the M w 7.1 mainshock. The ~ 30,000 M w ≥1 earthquakes that were recorded on the dense arrays provide an unusually large volume of data with which to evaluate the earthquake sequence. This report describes the recording arrays and is intended to provide metadata for researchers interested in evaluating various aspects of the 2019 Ridgecrest earthquake sequence using the nodal data set.

California↗

Recharge rates and chemistry beneath playas of the High Plains aquifer: A literature review and synthesis

Playas are ephemeral, closed-basin wetlands that are important zones of recharge to the High Plains (or Ogallala) aquifer and critical habitat for birds and other wildlife in the otherwise semiarid, shortgrass prairie and agricultural landscape. The ephemeral nature of playas, low regional recharge rates, and a strong reliance on ground water from the High Plains aquifer has prompted many questions regarding the contribution of recharge from playas to the regional aquifer. To address these questions and concerns, the U.S. Geological Survey, in cooperation with the Playa Lakes Joint Venture, present a review and synthesis of the more than 175 publications about recharge rates and chemistry beneath playas and interplaya settings. Although a number of questions remain regarding the controls on recharge rates and chemistry beneath playas, the results from most published studies indicate that recharge rates beneath playas are substantially (1 to 2 orders of magnitude) higher than recharge rates beneath interplaya settings. The synthesis presented here supports the conceptual model that playas are important zones of recharge to the High Plains aquifer and are not strictly evaporative pans. The major findings of this synthesis yield science-based implications for the protection and management of playas and ground-water resources of the High Plains aquifer and directions for future research.

High Plains aquifer↗

Physiological Ecology and Ecohydrology of Coastal Forested Wetlands

The form, function, and productivity of wetland communities are influenced strongly by the hydrologic regime of an area. Wetland ecosystems persist by depending upon surpluses of rainfall, evapotranspiration, soil moisture, and frequency and amplitude of water-level fluctuations. Yet, wetland vegetation can also influence ecosystem water economy through conservative water- and carbon-use strategies at several organizational scales. Scientists have described leaf-level water-use efficiency in coastal mangrove forests as being among the highest of any ecosystem. These forested wetlands occur in intertidal areas and often persist under flooded saline conditions. Are these same strategies used by other types of coastal forested wetlands? Do conservative water-use strategies reflect a consequence of salt balance more than efficiency in water use per se? At what organizational scales do these strategies manifest? These are just a few of the questions being answered by physiological and landscape ecologists at the U.S. Geological Survey National Wetlands Research Center (NWRC).

Fact Sheet↗

Libraries program

The U.S. Congress authorized a library for the U.S. Geological Survey (USGS) in 1879. The library was formally established in 1882 with the naming of the first librarian and began with a staff of three and a collection of 1,400 books. Today, the USGS Libraries Program is one of the world's largest Earth and natural science repositories and a resource of national significance used by researchers and the public worldwide.

General Information Product↗