Search USGS⌕ Search

SEARCH · Search USGS

Results for “Nature Scientific Reports”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,225 records · Page 68Linked to original sources

Groundwater discharge to the Mississippi River and groundwater balances for the Interstate 94 Corridor surficial aquifer, Clearwater to Elk River, Minnesota, 2012–14

The Interstate 94 Corridor has been identified as 1 of 16 Minnesota groundwater areas of concern because of its limited available groundwater resources. The U.S. Geological Survey, in cooperation with the Minnesota Department of Natural Resources, completed six seasonal and annual groundwater balances for parts of the Interstate 94 Corridor surficial aquifer to better understand its long-term (next several decades) sustainability. A high-precision Mississippi River groundwater discharge measurement of 5.23 cubic feet per second per mile was completed at low-flow conditions to better inform these groundwater balances. The recharge calculation methods RISE program and Soil-Water-Balance model were used to inform the groundwater balances. For the RISE-derived recharge estimates, the range was from 3.30 to 11.91 inches per year; for the SWB-derived recharge estimates, the range was from 5.23 to 17.06 inches per year. Calculated groundwater discharges ranged from 1.45 to 5.06 cubic feet per second per mile, a ratio of 27.7 to 96.4 percent of the measured groundwater discharge. Ratios of groundwater pumping to total recharge ranged from 8.6 to 97.2 percent, with the longer-term groundwater balances ranging from 12.9 to 19 percent. Overall, this study focused on the surficial aquifer system and its interactions with the Mississippi River. During the study period (October 1, 2012, through November 30, 2014), six synoptic measurements, along with continuous groundwater hydrographs, rainfall records, and a compilation of the pertinent irrigation data, establishes the framework for future groundwater modeling efforts.

Minnesota↗

Groundwater-level altitudes and groundwater-flow direction and nature and extent of volatile and semivolatile organic compounds at Petro-Chemical Systems, Inc. (Turtle Bayou), Superfund site, Liberty County, Texas, 2020

The Petro-Chemical Systems, Inc. (Turtle Bayou), Superfund site is 15 miles southeast of Liberty, Texas, in Liberty County. Improper disposal of waste oils led to contamination of soil and groundwater at the site. In cooperation with the U.S. Environmental Protection Agency, the U.S. Geological Survey collected water-quality samples from 11 monitoring wells at the site, in particular the area near well MW-109A (the MW-109 area), in August and September 2020 and compared the water-quality results to the results from previous water-quality sampling events at the site in June 2016 and August 2018 with a focus on benzene concentrations. Contours of groundwater-level altitudes in the MW-109 area indicate that groundwater-flow direction is south-southeasterly in the eastern part and south-southwesterly in the western part. Of the 51 volatile organic compounds analyzed, 13 were detected in groundwater samples from 1 or more wells. In all but 1 well, MW-109A, concentrations of these compounds were less than 100 micrograms per liter. Benzene is still the principal contaminant of concern, as it persists at concentrations exceeding 53,000 micrograms per liter, although naphthalene also appears to be a contaminant of concern, as it was detected at the greatest concentration of any semivolatile organic compound analyte (1,100 micrograms per liter in the sample from well MW-109A).

Texas↗

Simulation of groundwater and surface-water flow in the upper Deschutes Basin, Oregon

This report describes a hydrologic model for the upper Deschutes Basin in central Oregon developed using the U.S. Geological Survey (USGS) integrated Groundwater and Surface-Water Flow model (GSFLOW). The upper Deschutes Basin, which drains much of the eastern side of the Cascade Range in Oregon, is underlain by large areas of permeable volcanic rock. That permeability, in combination with the large annual precipitation at high elevations, results in a substantial regional aquifer system and a stream system that is heavily groundwater dominated. The upper Deschutes Basin is also an area of expanding population and increasing water demand for public supply and agriculture. Surface water was largely developed for agricultural use by the mid-20th century, and is closed to additional appropriations. Consequently, water users look to groundwater to satisfy the growing demand. The well‑documented connection between groundwater and the stream system, and the institutional and legal restrictions on streamflow depletion by wells, resulted in the Oregon Water Resources Department (OWRD) instituting a process whereby additional groundwater pumping can be permitted only if the effects to streams are mitigated, for example, by reducing permitted surface-water diversions. Implementing such a program requires understanding of the spatial and temporal distribution of effects to streams from groundwater pumping. A groundwater model developed in the early 2000s by the USGS and OWRD has been used to provide insights into the distribution of streamflow depletion by wells, but lacks spatial resolution in sensitive headwaters and spring areas. The integrated model developed for this project, based largely on the earlier model, has a much finer grid spacing allowing resolution of sensitive headwater streams and important spring areas, and simulates a more complete set of surface processes as well as runoff and groundwater flow. In addition, the integrated model includes improved representation of subsurface geology and explicitly simulates the effects of hydrologically important fault zones not included in the previous model. The upper Deschutes Basin GSFLOW model was calibrated using an iterative trial and error approach using measured water-level elevations (water levels) from 800 wells, 144 of which have time series of 10 or more measurements. Streamflow was calibrated using data from 21 gage locations. At 14 locations where measured flows are heavily influenced by reservoir operations and irrigation diversions, so called “ naturalized ” flows, with the effects of reservoirs and diversion removed, developed by the Bureau of Reclamation, were used for calibration. Surface energy and moisture processes such as solar radiation, snow accumulation and melting, and evapotranspiration were calibrated using national datasets as well as data from long-term measurement sites in the basin. The calibrated Deschutes GSFLOW model requires daily precipitation, minimum and maximum air temperature data, and monthly data describing groundwater pumping and artificial recharge from leaking irrigation canals (which are a significant source of groundwater recharge). The calibrated model simulates the geographic distribution of hydraulic head over the 5,000 ft range measured in the basin, with a median absolute residual of about 53 ft. Temporal variations in head resulting from climate cycles, pumping, and canal leakage are well simulated over the model area. Simulated daily streamflow matches gaged flows or calculated naturalized flows for streams including the Crooked and Metolius Rivers, and lower parts of the mainstem Deschutes River. Seasonal patterns of runoff are less well fit in some upper basin streams. Annual water balances of streamflow are good over most of the model domain. Model fit and overall capabilities are appropriate for the objectives of the project. The integrated model results confirm findings from other studies and models indicating that most streamflow in the upper Deschutes Basin comes directly from groundwater discharge. The integrated model provides additional insights about the components of streamflow including direct groundwater discharge to streams, interflow, groundwater discharge to the land surface (Dunnian flow), and direct runoff (Hortonian flow). The new model provides improved capability for exploring the timing and distribution of streamflow capture by wells, and the hydrologic response to changes in other external stresses such as canal operation, irrigation, and drought. Because the model uses basic meteorological data as the primary input; and simulates surface energy and moisture balances, groundwater recharge and flow, and all components of streamflow; it is well suited for exploring the hydrologic response to climate change, although no such simulations are included in this report. The model was developed as a tool for future application; however, example simulations are provided in this report. In the example simulations, the model is used to explore the influence of well location and geologic structure on stream capture by pumping wells. Wells were simulated at three locations within a 12-mi area close to known groundwater discharge areas and crossed by a regional fault zone. Simulations indicate that the magnitude and timing of stream capture from pumping is largely controlled by the geographic location of the wells, but that faults can have a large influence on the propagation of pumping stresses.

Oregon↗

Grammar to graph—An approach for semantic transformation of annotations to triples

Data annotation is the process of labeling data to show the outcome that a related data model should predict. In this study, annotation data were transformed into semantic graph triples, mainly for use with the Resource Description Framework (RDF), a type of entity-relationship-attribute data model for graph databases. The transformation of annotation data to semantic graph triples provides complex linguistic meaning with data handling advantages such as reduced data storage needs, improved logical specification of relations between objects, and reusable classes and properties that support logic and inference. A grammar-based framework in graph form supports user questions and queries. The words defining approximately 334 topographic feature types compiled by the U.S. Geological Survey were tokenized as units of analysis and grouped by part of speech. Their dependency relations were identified for this study using natural language processing libraries. Dependency concepts are used as structured semantic relations among part-of-speech classes. Tokens, units equivalent to words, form instances of classes and were quantified within a tabular output format using PostgreSQL data storage software. Table data were logically aligned as triples following a mapping file and stored with an ontology file using Ontop virtual triplestore software. A grammar ontology schema for the data was synchronized to match queries whose results validated the graph’s structure. The text analysis produced 8 part-of-speech classes of content words for object representations and 4 classes of function words for operational applications. Dependency relations formed 27 ontology properties for topographic subgraph structures. Token occurrences shaped overall ontology salience and formed a lexicon of syntactic terms for subgraph objects and properties. The schema ontology of class and property population shapes formed the lexicon of English terms. SPARQL Protocol and RDF Query Language (SPARQL) was used with the lexicon to conform data to RDF guidelines. This study confirms the hypothesis that although linguistic logic varies from description logic, its approximation applies to ontology design. Property and query use case patterns extracted from the analysis support queries concerning complex topographic relations and patterns normally embedded within text definitions. The method used in this study could be applied to text forms in other domains, such as survey notes.

Scientific Investigations Report↗

Floods of Selected Streams in Arkansas, Spring 2008

Floods can cause loss of life and extensive destruction to property. Monitoring floods and understanding the reasons for their occurrence are the responsibility of many Federal agencies. The National Weather Service, the U.S. Army Corps of Engineers, and the U.S. Geological Survey are among the most visible of these agencies. Together, these three agencies collect and analyze floodflow information to better understand the variety of mechanisms that cause floods, and how the characteristics and frequencies of floods vary with time and location. The U.S. Geological Survey (USGS) has monitored and assessed the quantity of streamflow in our Nation's streams since the agency's inception in 1879. Because of ongoing collection and assessment of streamflow data, the USGS can provide information about a range of surface-water issues including the suitability of water for public supply and irrigation and the effects of agriculture and urbanization on streamflow. As part of its streamflow-data collection activities, the USGS measured streamflow in multiple streams during extreme flood events in Arkansas in the spring of 2008. The analysis of streamflow information collected during flood events such as these provides a scientific basis for decision making related to resource management and restoration. Additionally, this information can be used by water-resource managers to better define flood-hazard areas and to design bridges, culverts, dams, levees, and other structures. Water levels (stage) and streamflow (discharge) currently are being monitored in near real-time at approximately 150 locations in Arkansas. The streamflow-gaging stations measure and record hydrologic data at 15-minute or hourly intervals; the data then are transmitted through satellites to the USGS database and displayed on the internet every 1 to 4 hours. Streamflow-gaging stations in Arkansas are part of a network of over 7,500 active streamflow-gaging stations operated by the USGS throughout the United States in cooperation with other Federal, State, and local government agencies. In Arkansas, the major supporters of the streamflow-gaging network are the U.S. Army Corps of Engineers, Arkansas Natural Resources Commission, Arkansas Department of Environmental Quality, and Arkansas Geological Survey. Many other Federal, State, and local government entities provide additional support for streamflow-gaging stations. It is the combined support of the USGS and all funding partners that make it possible to maintain an adequate streamflow-gaging network in Arkansas. Data collected over the years at streamflow-gaging stations can be used to characterize the relative magnitude of flood events and their statistical frequency of occurrence. These analyses provide water-resource managers with accurate and reliable hydrologic information based on present and historical flow conditions. Continued collection of streamflow data, with consideration of changes in land use, agricultural practices, and climate change, will help scientists to more accurately characterize the magnitude of extreme floods in the future.

Fact Sheet↗

Two-dimensional hydraulic model for the Chain of Lakes on the Fox River near McHenry, Illinois

Forecasts of flows entering and leaving the Chain of Lakes on the Fox River in northeastern Illinois are critical information to water-resource managers operating the Stratton Dam at McHenry, Illinois. These managers determine the optimal operation of the Stratton Dam at McHenry, Ill., to manage Chain of Lakes pool levels and to help mitigate flooding in the Chain of Lakes system. In 2020, the U.S. Geological Survey (USGS) and the Illinois Department of Natural Resources–Office of Water Resources (IDNR–OWR) began a cooperative study to develop a system to enable engineers and planners to simulate and communicate water-surface elevations and flows and to proactively prepare for runoff events forecasted for the Chain of Lakes. The hydraulic model described in this report may be helpful to the IDNR–OWR for optimizing the operation of the Stratton Dam and includes the implementation of three newly installed torque-tube crest gates that became operational in 2020. The hydraulic model for the Chain of Lakes was developed using the Hydrologic Engineering Center–River Analysis System program (version 6.5). The hydraulic model was used to simulate water-surface elevations and flows through the 18.5-mile Chain of Lakes system to 1.7 miles downstream from the Stratton Dam. Five USGS streamgages within the study area were used as reference points for model calibration and initial water-surface elevations for beginning a simulation. The hydraulic model was calibrated to three runoff events that incorporated the design specifications and observed gate operations of the Stratton Dam; furthermore, the hydraulic model simulated a validation event and a substantial flooding event during July 2017. The July 2017 event predated the torque-tube crest gate installation but nevertheless tested the performance of the model for such a substantial event. The model simulation results were a good fit to observed records at USGS streamgages with simulated peak water-surface elevations within −0.36–0.15 foot of observed events. The hydraulic model was then implemented into a forecast workflow that streamlines implementation of model inputs and documents the model outputs tailored to IDNR–OWS Stratton Dam operations and interpretations of simulated water-surface elevations and flows.

Illinois↗

Ground-water quality in the carbonate-rock aquifer of the Great Basin, Nevada and Utah, 2003

The carbonate-rock aquifer of the Great Basin is named for the thick sequence of Paleozoic limestone and dolomite with lesser amounts of shale, sandstone, and quartzite. It lies primarily in the eastern half of the Great Basin and includes areas of eastern Nevada and western Utah as well as the Death Valley area of California and small parts of Arizona and Idaho. The carbonate-rock aquifer is contained within the Basin and Range Principal Aquifer, one of 16 principal aquifers selected for study by the U.S. Geological Survey’s National Water- Quality Assessment Program. Water samples from 30 ground-water sites (20 in Nevada and 10 in Utah) were collected in the summer of 2003 and analyzed for major anions and cations, nutrients, trace elements, dissolved organic carbon, volatile organic compounds (VOCs), pesticides, radon, and microbiology. Water samples from selected sites also were analyzed for the isotopes oxygen-18, deuterium, and tritium to determine recharge sources and the occurrence of water recharged since the early 1950s. Primary drinking-water standards were exceeded for several inorganic constituents in 30 water samples from the carbonate-rock aquifer. The maximum contaminant level was exceeded for concentrations of dissolved antimony (6 μg/L) in one sample, arsenic (10 μg/L) in eleven samples, and thallium (2 μg/L) in one sample. Secondary drinking-water regulations were exceeded for several inorganic constituents in water samples: chloride (250 mg/L) in five samples, fluoride (2 mg/L) in two samples, iron (0.3 mg/L) in four samples, manganese (0.05 mg/L) in one sample, sulfate (250 mg/L) in three samples, and total dissolved solids (500 mg/L) in seven samples. Six different pesticides or metabolites were detected at very low concentrations in the 30 water samples. The lack of VOC detections in water sampled from most of the sites is evidence thatVOCs are not common in the carbonate-rock aquifer. Arsenic values for water range from 0.7 to 45.7 μg/L, with a median value of 9.6 μg/L. Factors affecting arsenic concentration in the carbonate-rock aquifer in addition to geothermal heating are its natural occurrence in the aquifer material and time of travel along the flow path. Most of the chemical analyses, especially for VOCs and nutrients, indicate little, if any, effect of overlying land-use patterns on ground-water quality. The water quality in recharge areas for the aquifer where human activities are more intense may be affected by urban and/or agricultural land uses as evidenced by pesticide detections. The proximity of the carbonate-rock aquifer at these sites to the land surface and the potential for local recharge to occur through the fractured rock likely results in the occurrence of these and other land-surface related contaminants in the ground water. Water from sites sampled near outcrops of carbonate-rock aquifer likely has a much shorter residence time resulting in a potential for detection of anthropogenic or land-surface related compounds. Sites located in discharge areas of the flow systems or wells that are completed at a great depth below the land surface generally show no effects of land-use activities on water quality. Flow times within the carbonate-rock aquifer, away from recharge areas, are on the order of thousands of years, so any contaminants introduced at the land surface that will not degrade along the flow path have not reached the sampled sites in these areas.

Nevada, Utah↗

Surface-water quantity and quality, aquatic biology, stream geomorphology, and groundwater-flow simulation for National Guard Training Center at Fort Indiantown Gap, Pennsylvania, 2002-05

Base-line and long-term monitoring of water resources of the National Guard Training Center at Fort Indiantown Gap in south-central Pennsylvania began in 2002. Results of continuous monitoring of streamflow and turbidity and monthly and stormflow water-quality samples from two continuous-record long-term stream sites, periodic collection of water-quality samples from five miscellaneous stream sites, and annual collection of biological data from 2002 to 2005 at 27 sites are discussed. In addition, results from a stream-geomorphic analysis and classification and a regional groundwater-flow model are included. Streamflow at the facility was above normal for the 2003 through 2005 water years and extremely high-flow events occurred in 2003 and in 2004. Water-quality samples were analyzed for nutrients, sediments, metals, major ions, pesticides, volatile and semi-volatile organic compounds, and explosives. Results indicated no exceedances for any constituent (except iron) above the primary and secondary drinking-water standards or health-advisory levels set by the U.S. Environmental Protection Agency. Iron concentrations were naturally elevated in the groundwater within the watershed because of bedrock lithology. The majority of the constituents were at or below the method detection limit. Sediment loads were dominated by precipitation due to the remnants of Hurricane Ivan in September 2004. More than 60 percent of the sediment load measured during the entire study was transported past the streamgage in just 2 days during that event. Habitat and aquatic-invertebrate data were collected in the summers of 2002-05, and fish data were collected in 2004. Although 2002 was a drought year, 2003-05 were above-normal flow years. Results indicated a wide diversity in invertebrates, good numbers of taxa (distinct organisms), and on the basis of a combination of metrics, the majority of the 27 sites indicated no or slight impairment. Fish-metric data from 25 sites indicated results similar to the invertebrate data. Stream classification based on evolution of the stream channels indicates about 94 percent of the channels were considered to be in equilibrium (type B or C channels), neither aggrading nor eroding. A regional, uncalibrated groundwater-flow model indicated the surface-water and groundwater-flow divides coincided. Because of folding of rock layers, groundwater was under confined conditions and nearly all the water leaves the facility via the streams.

Scientific Investigations Report↗

A spatially explicit suspended-sediment load model for western Oregon

We calibrated the watershed model SPARROW (Spatially Referenced Regressions on Watershed attributes) to give estimates of suspended-sediment loads for western Oregon and parts of northwestern California. Estimates of suspended-sediment loads were derived from a nonlinear least squares regression that related explanatory variables representing landscape and transport conditions to measured suspended-sediment loads at 68 measurement stations. The model gives estimates of model coefficients and their uncertainty within a spatial framework defined by the National Hydrography Dataset Plus hydrologic network. The resulting model explained 64 percent of the variability in suspended-sediment yield and had a root mean squared error value of 0.737. The predictor variables selected for the final model were (1) generalized lithologic province, (2) mean annual precipitation, and (3) burned area (by recent wildfire). Other landscape characteristics also were considered, but they were not significant predictors of sediment transport, were strongly correlated with another predictor variable, or were not as significant as the predictors selected for the final model. The northern Oregon coastal drainages had the highest predicted suspended sediment yields (median yield 475 kilograms per hectare per year) and the Klamath River Basin had the lowest (median yield 53 kilograms per hectare per year). Quaternary deposits were, on average, the largest contributor to incremental suspended-sediment yield even though this lithologic province only makes up 17 percent of the modeling domain. Coast Range sedimentary rocks and Coast Range volcanic rocks had high suspended-sediment yields whereas, in addition to the Klamath terrane, the Western Cascade and High Cascade lithologic provinces had low suspended-sediment yields. Precipitation and the area affected by recent wildfire both positively correlated with suspended-sediment load. Suspended-sediment transport rates predicted by this SPARROW model are less than historical (1956–73) and long‑term (thousands of years) geological rates. This difference likely results, in part, from biases in the data underlying the SPARROW model, probably resulting in predicted suspended-sediment estimates that underestimate actual transport rates. However, the differences also likely owe to natural and human-caused variation in suspended-sediment yields as they respond to changes in climate, vegetation, fire frequency, and land use. In particular, decreases in mean annual suspended-sediment yields within the Umpqua River Basin since 1956–73 may owe to less intense forest harvest, passage of the Oregon Forest Practices Act of 1971, and increased emphasis in habitat protection in recent decades. Such sensitivity may have implications for the spatial and temporal distributions of aquatic and riparian habitats. Knowledge of the regionally important patterns and factors in suspended-sediment sources and transport could support broad-scale, water-quality management objectives and priorities. Because of biases and limitations of this model, however, these results are most applicable for general comparisons and for broad areas such as large watersheds. For example, despite having similar area, precipitation, and land-use, the Umpqua River Basin generates 68 percent more suspended sediment than the Rogue River Basin, chiefly because of the large area of Coast Range sedimentary province in the Umpqua River Basin. By contrast, the Rogue River Basin contains a much larger area of Klamath terrane rocks, which produce significantly less suspended load, although recent fire disturbance (in 2002) has apparently elevated suspended sediment yields in the tributary Illinois River watershed. Fine-scaled analysis, however, will require more intensive, locally focused measurements.

Scientific Investigations Report↗

Isolation and identification of microcystin-degrading bacteria in Lake Erie source waters and drinking-water plant sand filters

The increasing prevalence of cyanobacterial harmful algal blooms and the toxins they produce is a global water-quality issue. In the Western Basin of Lake Erie, high microcystin concentrations have led to water-quality advisories, process adjustments for treating drinking water, and increased water-quality monitoring. Biodegradation is an environmentally friendly and cost-effective way to reduce concentrations of microcystins in drinking water; however, few studies have been done to determine biodegradation potential of bacteria indigenous to the Lake Erie watershed. As part of a cooperative program between the U.S. Geological Survey and the U.S. Environmental Protection Agency, this study aimed to identify naturally occurring microcystin-degrading bacteria in source waters and in the sand filters of drinking-water treatment plants in the Western Basin of Lake Erie. Biodegradation of microcystin-LR was found to occur in microcosms developed with three different Lake Erie-area sources—Lake Erie water, water from storage reservoirs supplied by inland streams, and water or solid medium from sand/anthracite filters at drinking-water plants. In microplates with microcystin-LR as the sole carbon source, 10 isolates exhibited cellular respiration and were, therefore, identified as promising microcystin biodegraders; 4 of those isolates subsequently were found to have potential to form biofilms. The 10 promising isolates along with 14 additional isolates from the microcosms were identified by 16S ribosomal RNA sequencing: 15 isolates were γ-proteobacteria, 6 isolates were β-proteobacteria, 1 isolate was an α-proteobacterium, 1 isolate was a flavobacterium in the phylum Bacteroidetes , and 1 isolate was in the phylum Actinobacteria . Isolates were screened for possession of the mlrA gene (found to encode for the protein responsible for cleaving the cyclic structure of microcystin), and results indicate that, for Lake Erie source waters and elsewhere, more work would be required to identify microcystin-biodegradation pathways and products and to confirm biodegradation rates in pure culture isolates.

Lake Erie↗

Water-budgets and recharge-area simulations for the Spring Creek and Nittany Creek Basins and parts of the Spruce Creek Basin, Centre and Huntingdon Counties, Pennsylvania, Water Years 2000–06

This report describes the results of a study by the U.S. Geological Survey in cooperation with ClearWater Conservancy and the Pennsylvania Department of Environmental Protection to develop a hydrologic model to simulate a water budget and identify areas of greater than average recharge for the Spring Creek Basin in central Pennsylvania. The model was developed to help policy makers, natural resource managers, and the public better understand and manage the water resources in the region. The Groundwater and Surface-water FLOW model (GSFLOW), which is an integration of the Precipitation-Runoff Modeling System (PRMS) and the Modular Groundwater Flow Model (MODFLOW-NWT), was used to simulate surface water and groundwater in the Spring Creek Basin for water years 2000–06. Because the groundwater and surface-water divides for the Spring Creek Basin do not coincide, the study area includes the Nittany Creek Basin and headwaters of the Spruce Creek Basin. The hydrologic model was developed by the use of a stepwise process: (1) develop and calibrate a PRMS model and steady-state MODFLOW-NWT model; (2) re-calibrate the steady-state MODFLOW-NWT model using potential recharge estimates simulated from the PRMS model, and (3) integrate the PRMS and MODFLOW-NWT models into GSFLOW. The individually calibrated PRMS and MODFLOW-NWT models were used as a starting point for the calibration of the fully coupled GSFLOW model. The GSFLOW model calibration was done by comparing observations and corresponding simulated values of streamflow from 11 streamgages and groundwater levels from 16 wells. The cumulative water budget and individual water budgets for water years 2000–06 were simulated by using GSFLOW. The largest source and sink terms are represented by precipitation and evapotranspiration, respectively. For the period simulated, a net surplus in the water budget was computed where inflows exceeded outflows by about 1.7 billion cubic feet (0.47 inches per year over the basin area); storage increased by about the same amount to balance the budget. The rate and distribution of recharge throughout the Spring Creek, Nittany Creek, and Spruce Creek Basins is variable as a result of the high degree of hydrogeologic heterogeneity and karst features. The greatest amount of recharge was simulated in the carbonate-bedrock valley, near the toe slopes of Nittany and Tussey Mountains, in the Scotia Barrens, and along the area coinciding with the Gatesburg Formation. Runoff extremes were observed for water years 2001 (dry year) and 2004 (wet year). Simulated average recharge rates (water reaching the saturated zone as defined in GSFLOW) for 2001 and 2004 were 5.4 in/yr and 22.0 in/yr, respectively. Areas where simulations show large variations in annual recharge between wet and dry years are the same areas where simulated recharge was large. Those areas where rates of groundwater recharge are much higher than average, and are capable of accepting substantially greater quantities of recharge during wet years, might be considered critical for maintaining the flow of springs, stream base flow, or the source of water to supply wells. The slopes of the Bald Eagle, Tussey, and Nittany Mountains are relatively insensitive to variations in recharge, primarily because of reduced infiltration rates and steep slopes.

Pennsylvania↗

Characterization of near-surface geology and possible voids using resistivity and electromagnetic methods at the Gran Quivira Unit of Salinas Pueblo Missions National Monument, central New Mexico, June 2005

At the Gran Quivira Unit of Salinas Pueblo Missions National Monument in central New Mexico, a partially excavated pueblo known as Mound 7 has recently become architecturally unstable. Historical National Park Service records indicate both natural caves and artificial tunnels may be present in the area. Knowledge of the local near-surface geology and possible locations of voids would aid in preservation of the ruins. Time-domain and frequency-domain electromagnetic as well as direct-current resistivity methods were used to characterize the electrical structure of the near-surface geology and to identify discrete electrical features that may be associated with voids. Time-domain electromagnetic soundings indicate three major electrical layers; however, correlation of these layers to geologic units was difficult because of the variability of lithologic data from existing test holes. Although resistivity forward modeling was unable to conclusively determine the presence or absence of voids in most cases, the high-resistivity values (greater than 5,000 ohm-meters) in the direct-current resistivity data indicate that voids may exist in the upper 50 meters. Underneath Mound 7, there is a possibility of large voids below a depth of 20 meters, but there is no indication of substantial voids in the upper 20 meters. Gridded lines and profiled inversions of frequency-domain electromagnetic data showed excellent correlation to resistivity features in the upper 5 meters of the direct-current resistivity data. This technique showed potential as a reconnaissance tool for detecting voids in the very near surface.

New Mexico↗

Hydrogeology and sources of water to select springs in Black Canyon, south of Hoover Dam, Lake Mead National Recreation Area, Nevada and Arizona

Springs in Black Canyon of the Colorado River, directly south of Hoover Dam in the Lake Mead National Recreation Area, Nevada and Arizona, are important hydrologic features that support a unique riparian ecosystem including habitat for endangered species. Rapid population growth in areas near and surrounding Black Canyon has caused concern among resource managers that such growth could affect the discharge from these springs. The U.S. Geological Survey studied the springs in Black Canyon between January 2008, and May 2014. The purposes of this study were to provide a baseline of discharge and hydrochemical data from selected springs in Black Canyon and to better understand the sources of water to the springs. Various hydrologic, hydrochemical, geochemical, and geologic data were collected and analyzed during this study. More than 100 hydrologic sites consisting of springs, seeps, pools, rivers, reservoirs, and wells were investigated, and measurements were taken at 75 of these sites. Water levels were measured or compiled for 42 wells and samples of water were collected from 36 unique sites and submitted for laboratory analyses of hydrochemical constituents. Measurements of discrete discharge were made from nine unique spring areas and four sites in Black Canyon were selected for continuous monitoring of discharge. Additionally, samples of rock near Hoover Dam were collected and analyzed to determine the age of spring deposits. Results of hydrochemical analyses indicate that discharge from springs in Black Canyon is from two sources: (1) Lake Mead, and (2) a local and (or) regional source. Discharge from springs closest to Hoover Dam contains a substantial percentage (>50 percent) of water from Lake Mead. This includes springs that are between Hoover Dam and Palm Tree Spring. Discharge from springs south of Palm Tree Spring contains a substantial percentage (>50 percent) of the water that is believed to come from a combination of other local and regional sources, although the exact location and nature of these sources is not clear. The unique hydrochemistry of some springs, such as Bighorn Sheep Spring and Latos Pool, suggests that little if any water discharging from these springs comes from Lake Mead. Geochronological results of spring deposits at several sites near Hoover Dam indicate that most deposits are young and likely formed after the construction of Hoover Dam. Several major faults, including the Salt Cedar Fault and the Palm Tree Fault, play an important role in the movement of groundwater. Groundwater may move along these faults and discharge where faults intersect volcanic breccias or fractured rock. Vertical movement of groundwater along faults is suggested as a mechanism for the introduction of heat energy present in groundwater from many of the springs. Groundwater altitudes in the study area indicate a potential for flow from Eldorado Valley to Black Canyon although current interpretations of the geology of this area do not favor such flow. If groundwater from Eldorado Valley discharges at springs in Black Canyon then the development of groundwater resources in Eldorado Valley could result in a decrease in discharge from the springs. Geology and structure indicate that it is not likely that groundwater can move between Detrital Valley and Black Canyon. Thus, the development of groundwater resources in Detrital Valley may not result in a decrease in discharge from springs in Black Canyon.

Arizona, Nevada↗

Hydrogeology and water quality of sand and gravel aquifers in McHenry County, Illinois, 2009–14, and comparison to conditions in 1979

Baseline conditions for the sand and gravel aquifers (groundwater) in McHenry County, Illinois, were assessed using data from a countywide network of 44 monitoring wells collecting continuous water-level data from 2009–14. In 2010, water-quality data were collected from 41 of the monitoring wells, along with five additional monitoring wells available from the U.S. Geological Survey National Water Quality Assessment Program. Periodic water-quality data were collected from 2010–14 from selected monitoring wells. The continuous water-level data were used to identify the natural and anthropogenic factors that influenced the water levels at each well. The water-level responses to natural influences such as precipitation, seasonal and annual variations, barometric pressure, and geology, and to anthropogenic influences such as pumping were used to determine (1) likely hydrogeologic setting (degree of aquifer confinement and interconnections) that, in part, are related to lithostratigraphy; and (2) areas of recharge and discharge related to vertical flow directions. Water-level trends generally were determined from the 6 years of data collection (2009–14) to infer effects of weather variability (drought) on recharge. Precipitation adds an estimated 2.4 inches per year of recharge to the aquifer. Some of this recharge is subsequently discharged to streams and some is discharged to supply wells. A few areas in the eastern half of the county had higher average recharge rates, indicating a need for adequate protection of these recharge areas. Downward vertical flow gradients in upland areas indicate that recharge to the confined aquifer units occurs near upland areas. Upward vertical flow gradients in lowland areas indicate discharge at locations of surface water and groundwater interaction (wetlands, ponds, and streams). Monitoring wells were sampled for major and minor ions, metals, and nutrients and a subset of wells was sampled for trace elements, dissolved gases, pesticides, and volatile organic compounds. The results were compared to health ‑ based and aesthetically based standards, which include the U.S. Environmental Protection Agency Maximum Contaminant Level (EPA MCL), and EPA Secondary Maximum Contaminant Levels (SMCL), as well as EPA Health-based Standards Drinking Water Advisories. Health‑based standards were exceeded for arsenic in 22 percent, sodium in 20 percent, and nitrates in 2 percent of the monitoring wells sampled. Aesthetically based standards were exceeded for total dissolved solids in 33 percent, chloride in 11 percent, iron in 85 percent, and manganese in 30 percent of the wells sampled. Many of these same constituents, such as arsenic, iron, and manganese, are naturally occurring but become elevated in areas that have anoxic, mixed, and suboxic conditions. Some areas of potential vulnerability to anthropogenic-sourced constituents in the sand and gravel aquifers were evidenced by trace amounts of volatile organic compounds and pesticides detected in water-quality samples from shallow wells (total depth less of than 46 feet below land surface) near urban settings, and by the detection of elevated major ions (chloride, sodium, magnesium, and calcium) associated, in part, with road-salt applications. Source analysis for chloride indicates mixtures of road salt, water softeners, and sewage. Continuously measured specific conductance values were used as a surrogate for continuously measured chloride concentrations in the groundwater. The estimated chloride concentrations generally were highest in spring and lowest in summer, and occasionally peak during spring melt. Overall, the range of concentrations varied depending on the local thickness and hydraulic conductivity of the aquifer. Water levels and water quality from the countywide groundwater monitoring network were compared to water levels and water-quality results in 1979 from a previous U.S. Geological Survey study. Potentiometric surface maps show areas with inferred decreases of water levels near the southern and southeastern areas of McHenry County. Significant increases were noted for total dissolved solids and specific conductance. Chloride concentrations increased as much as 521 percent in three of six wells resampled in 2015 from the previous study.

Illinois↗

The potential effects of sodium bicarbonate, a major constituent from coalbed natural gas production, on aquatic life

The production water from coalbed natural gas (CBNG) extraction contains many constituents. The U.S. Environmental Protection Agency has established aquatic life criteria for some of these constituents, and it is therefore possible to evaluate their risk to aquatic life. However, of the major ions associated with produced waters, chloride is the only one with an established aquatic life criterion (U.S. Environmental Protection Agency, 1988). The focus of this research was NaHCO 3 , a compound that is a major constituent of coalbed natural gas produced waters in the Tongue and Powder River Basins. This project included laboratory experiments, field in situ experiments, a field mixing zone study, and a fishery presence/absence assessment. Though this investigation focuses on the Tongue and Powder River Basins, the information is applicable to other watersheds where sodium bicarbonate is a principle component of product water either from CBNG or from traditional or unconventional oil and gas development. These data can also be used to separate effects of saline discharges from those potentially posed by other constituents. Finally, this research effort and the additional collaboration with USGS Water Resources and Mapping, Bureau of Land Management, US Environmental Protection Agency, State of Montana, State of Wyoming, Montana State University, University of Wyoming, and others as part of a Powder River Aquatic Task Group, can be used as a model for successful approaches to studying landscapes with energy development. The laboratory acute toxicity experiments were completed with a suite of organisms, including 7 species of fish, 5 species of invertebrates, and 1 amphibian species. Experiments performed on these multiple species resulted in LC50s that ranged from 1,120 to greater than (>) 8,000 milligrams sodium bicarbonate per liter (mg NaHCO 3 /L) (also defined as 769 to >8,000 milligrams bicarbonate per liter (mg HCO 3 -/L) or total alkalinity expressed as 608 to >4,181 milligrams calcium carbonate per liter (mg CaCO 3 /L)) that varied across species and lifestage within a species. The age at which fish were exposed to NaHCO 3 significantly affected the severity of toxic responses for some organisms. The chronic toxicity of NaHCO 3 was defined in experiments that lasted from 7—60 days post-hatch. For these experiments, sublethal effects such as growth and reproduction, in addition to significant reductions in survival were included in the final determination of effects. Chronic toxicity was observed at concentrations that ranged from 450 to 800mg NaHCO 3 /L (also defined as 430 to 657 mg HCO 3 -/L or total alkalinity expressed as 354 to 539 mg CaCO 3 /L) and the specific concentration depended on the sensitivity of the four species of invertebrates and fish exposed. Sublethal investigations during chronic studies revealed percent decrease in the activity of sodium-potassium adenosine triphosphatase (Na/K ATPase, an enzyme involved in ionoregulation) and the age of the fish at the onset of the decrease may affect the ability of fathead minnow to survive exposures to NaHCO 3 . A database of toxicity evaluations of NaHCO 3 on aquatic life has been constructed. Using these data, sample acute and chronic criteria of 459 and 381 mg NaHCO 3 /L, respectively, can be calculated for the protection of aquatic life. The final derivation and implementation of such criteria is, of course, left to the discretion of the concerned management agencies. A combination of in situ experiments, static-renewal experiments performed simultaneously with in situ experiments, and static renewal experiments performed with site water in the laboratory, demonstrated that untreated coalbed natural gas (CBNG) product water from the Tongue and Powder River Basins reduces survival of fathead minnow and pallid sturgeon. More precisely, the survival of early-lifestage fathead minnow, especially those less than 6-days post hatch (dph), likely is reduced significantly in the field when concentrations of NaHCO 3 rise above 1,500 mg/L. However, age was not a factor for pallid sturgeon and they were sensitive to product water regardless of age. Treatment with the Higgins Loop™ technology and dilution of untreated water increased survival in the laboratory. Both of these situations reduced ammonia in addition to the concentrations of NaHCO 3 . These experiments addressed the acute toxicity of effluent waters being added to the main stem rivers, but did not address issues related to the volumes of water that may be added to the watershed. Mixing zones of the three outfalls studied ranged from approximately 800—1,200 m below the confluence and the areas within these mixing zones with acutely lethal concentrations of NaHCO 3 (as defined by the presence of concentrated dye) are limited. The areas with concentrations of NaHCO 3 more than the concentrations likely to cause significant mortality, and more than the calculated sample water-quality criteria in the Tongue and Powder River Basins appear to be limited to tributaries and parts of mixing zones with considerable additions of untreated effluent.

Montana;Wyoming↗

National water-quality assessment program : the Albemarle- Pamlico drainage

In 1991, the U.S. Geological Survey (USGS) began to implement a full-scale National Water-Quality Assessment (NAWQA) program. Long-term goals of the NAWQA program are to describe the status and trends in the quality of a large, representative part of the Nation's surface- and ground-water resources and to provide a sound, scientific understanding of the primary natural and human factors affecting the quality of these resources. In meeting these goals, the program will produce a wealth of water quality information that will be useful to policy makers and managers at the national, State, and local levels. Study-unit investigations constitute a major component of the NAWQA program, forming the principal building blocks on which national-level assessment activities are based. The 60 study-unit investigations that make up the program are hydrologic systems that include parts of most major river basins and aquifer systems. These study units cover areas of 1,200 to more than 65,000 square miles and incorporate about 60 to 70 percent of the Nation's water use and population served by public water supply. In 1991, the Albemarle-Pamlico drainage was among the first 20 NAWQA study units selected for study under the full-scale implementation plan. The Albemarle-Pamlico drainage study will examine the physical, chemical, and biological aspects of water quality issues in a coordinated investigation of surface water and ground water in the Albemarle-Pamlico drainage basin. The quantity and quality of discharge from the Albemarle-Pamlico drainage basin contribute to some water quality problems in the biologically sensitive waters of Albemarle and Pamlico Sounds. A retrospective analysis of existing water quality data will precede a 3-year period of intensive data-collection and analysis activities. The data resulting from this study and the improved understanding of important processes and issues in the upstream part of the study unit will enhance understanding of the quality of water in Albemarle-Pamlico Sounds, the second largest estuarine system in the United States.

Open-File Report↗

Evolutionary and ecological correlates of thiaminase in fishes

Thiamine (vitamin B 1 ) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort failure in salmonid predators that eat prey fish with thiaminase activity, yet it is generally unknown whether evolutionary history, fish traits, and/or environmental conditions lead to production of thiaminase. We conducted literature and GenBank BLAST sequence searches to collect thiaminase activity data and sequence homology data in expressed protein sequences for 300 freshwater and marine fishes. We then tested whether presence or absence of thiaminase could be predicted by evolutionary relationships, trophic level, omega-3 fatty acid concentrations, habitat, climate, invasive potential, and body size. There was no evolutionary relationship with thiaminase activity. It first appears in Class Actinoptergyii (bony ray-finned fishes) and is present across the entire Actinoptergyii phylogeny in both primitive and derived fish orders. Instead, ecological factors explained the most variation in thiaminase: fishes were more likely to express thiaminase if they fed closer to the base of the food web, were high in polyunsaturated fatty acids, lived in freshwater, and were from tropical climates. These data provide a foundation for understanding sources of thiaminase leading to thiamine deficiency in fisheries and other organisms, including humans that eat uncooked fish.

Scientific Reports↗

Hydrogeology and groundwater quality at monitoring wells installed for the Tunnel and Reservoir Plan System and nearby water-supply wells, Cook County, Illinois, 1995–2013

Groundwater-quality data collected from 1995 through 2013 from 106 monitoring wells open to the base of the Silurian aquifer surrounding the Tunnel and Reservoir Plan (TARP) System in Cook County, Illinois, were analyzed by the U.S. Geological Survey, in cooperation with the Metropolitan Water Reclamation District of Greater Chicago, to assess the efficacy of the monitoring network and the effects of water movement from the tunnel system to the surrounding aquifer. Groundwater from the Silurian aquifer typically drains to the tunnel system so that analyte concentrations in most of the samples from most of the monitoring wells primarily reflect the concentration of the analyte in the nearby Silurian aquifer. Water quality in the Silurian aquifer is spatially variable because of a variety of natural and non-TARP anthropogenic processes. Therefore, the trends in analyte values at a given well from 1995 through 2013 are primarily a reflection of the spatial variation in the value of the analyte in groundwater within that part of the Silurian aquifer draining to the tunnels. Intermittent drainage of combined sewer flow from the tunnel system to the Silurian aquifer when flow in the tunnel systemis greater than 80 million gallons per day may affect water quality in some nearby monitoring wells. Intermittent drainage of combined sewer flow from the tunnel system to the Silurian aquifer appears to affect the values of electrical conductivity, hardness, sulfate, chloride, dissolved organic carbon, ammonia, and fecal coliform in samples from many wells but typically during less than 5 percent of the sampling events. Drainage of combined sewer flow into the aquifer is most prevalent in the downstream parts of the tunnel systems because of the hydraulic pressures elevated above background values and long residence time of combined sewer flow in those areas. Elevated values of the analytes emplaced during intermittent migration of combined sewer flow into the Silurian aquifer decrease through time as water from the aquifer drains back into the tunnels in response to typical hydraulic conditions. Of the analytes sampled, fecal coliform provides the clearest indication of the location and timing of combined sewer flow into the Silurian aquifer surrounding the tunnel system.

Illinois↗