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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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USGS2010

The use of simulation and multiple environmental tracers to quantify groundwater flow in a shallow aquifer

Measurements of the concentrations of chlorofluorocarbons (CFCs), tritium, and other environmental tracers can be used to calculate recharge ages of shallow groundwater and estimate rates of groundwater movement. Numerical simulation also provides quantitative estimates of flow rates, flow paths, and mixing properties of the groundwater system. The environmental tracer techniques and the hydraulic analyses each contribute to the understanding and quantification of the flow of shallow groundwater. However, when combined, the two methods provide feedback that improves the quantification of the flow system and provides insight into the processes that are the most uncertain. A case study near Locust Grove, Maryland, is used to investigate the utility of combining groundwater age dating, based on CFCs and tritium, and hydraulic analyses using numerical simulation techniques. The results of the feedback between an advective transport model and the estimates of groundwater ages determined by the CFCs improve a quantitative description of the system by refining the system conceptualization and estimating system parameters. The plausible system developed with this feedback between the advective flow model and the CFC ages is further tested using a solute transport simulation to reproduce the observed tritium distribution in the groundwater. The solute transport simulation corroborates the plausible system developed and also indicates that, for the system under investigation with the data obtained from 0.9-m-long (3-foot-long) well screens, the hydrodynamic dispersion is negligible. Together the two methods enable a coherent explanation of the flow paths and rates of movement while indicating weaknesses in the understanding of the system that will require future data collection and conceptual refinement of the groundwater system.

Water Resources Research↗

USGS2019

Assessment of the potential for in-plume sulphur dioxide gas-ash interactions to influence the respiratory toxicity of volcanic ash

Background Volcanic plumes are complex environments composed of gases and ash particles, where chemical and physical processes occur at different temperature and compositional regimes. Commonly, soluble sulphate- and chloride-bearing salts are formed on ash as gases interact with ash surfaces. Exposure to respirable volcanic ash following an eruption is potentially a significant health concern. The impact of such gas-ash interactions on ash toxicity is wholly un-investigated. Here, we study, for the first time, whether the interaction of volcanic particles with sulphur dioxide (SO 2 ) gas, and the resulting presence of sulphate salt deposits on particle surfaces, influences toxicity to the respiratory system, using an advanced in vitro approach. Methods To emplace surface sulphate salts on particles, via replication of the physicochemical reactions that occur between pristine ash surfaces and volcanic gas, analogue substrates (powdered synthetic volcanic glass and natural pumice) were exposed to SO 2 at 500 °C, in a novel Advanced Gas-Ash Reactor, resulting in salt-laden particles. The solubility of surface salt deposits was then assessed by leaching in water and geochemical modelling. A human multicellular lung model was exposed to aerosolised salt-laden and pristine (salt-free) particles, and incubated for 24 h. Cell cultures were subsequently assessed for biological endpoints, including cytotoxicity (lactate dehydrogenase release), oxidative stress (oxidative stress-related gene expression; heme oxygenase 1 and NAD(P)H dehydrogenase [quinone] 1) and its (pro-)inflammatory response (tumour necrosis factor α, interleukin 8 and interleukin 1β at gene and protein levels). Results In the lung cell model no significant effects were observed between the pristine and SO 2 -exposed particles, indicating that the surface salt deposits, and the underlying alterations to the substrate, do not cause acute adverse effects in vitro . Based on the leachate data, the majority of the sulphate salts from the ash surfaces are likely to dissolve in the lungs prior to cellular uptake. Conclusions The findings of this study indicate that interaction of volcanic ash with SO 2 during ash generation and transport does not significantly affect the respiratory toxicity of volcanic ash in vitro . Therefore, sulphate salts are unlikely a dominant factor controlling variability in in vitro toxicity assessments observed during previous eruption response efforts.

Environmental Research↗

USGS1997

Mineral-resource data bases

Data bases are essential for modern scientific research. The new and exciting work being done in the Mineral Resource Program in the U.S. Geological Survey (USGS) usually begins with the question, "Where are the known deposits?" A mineral-resource data base containing this type of information and more can be useful not just to USGS scientists, but to anyone who needs such data. Users of the data bases from outside the USGS include mining and exploration companies, environmental groups, academia, other Federal Agencies, and the general public. At present, the USGS has two large mineral-resource data bases, MRDS (Mineral Resource Data System) and MAS (Minerals Availability System). MRDS was built and is mamtained by the USGS, and MAS was built and maintained by the Bureau of Mines. In 1996, after the Bureau was abolished, MAS was transferred to the USGS. The two data bases were compiled for different purposes and contain very different mformation. For instance, MAS contains information on costs, details of mining methods, and feasibility studies. MRDS has mineralogical and geologic data that are not contained in MAS. Because they are both mineral-resource data bases, however, they contain some information in common, such as location, name(s) of sites, and commodities present. Both data bases are international in scope, and both are quite large. MRDS contains over 110,000 records, while MAS has over 220,000. One reason that MAS has more records is that it contains information on smelters, mill sites, and fossil fuel sites, as well as mineral- resource sites. The USGS is working to combine the information in both data bases. This is a large undertaking that will require some years to complete. In the interim, information from both data bases will still be available

Fact Sheet↗

USGS2014

Temporal and spatial distributions of cold-water corals in the Drake Passage: insights from the last 35,000 years

Scleractinian corals have a global distribution ranging from shallow tropical seas to the depths of the Southern Ocean. Although this distribution is indicative of the corals having a tolerance to a wide spectrum of environmental conditions, individual species seem to be restricted to a much narrower range of ecosystem variables. One way to ascertain the tolerances of corals, with particular focus on the potential impacts of changing climate, is to reconstruct their growth history across a range of environmental regimes. This study examines the spatial and temporal distribution of the solitary scleractinian corals Desmophyllum dianthus, Gardineria antarctica, Balanophyllia malouinensis, Caryophyllia spp. and Flabellum spp. from five sites in the Drake Passage which cross the major frontal zones. A rapid reconnaissance radiocarbon method was used to date more than 850 individual corals. Coupled with U-Th dating, an age range of present day back to more than 100 thousand years was established for corals in the region. Within this age range there are distinct changes in the temporal and spatial distributions of these corals, both with depth and latitude, and on millennial timescales. Two major patterns that emerge are: (1) D. dianthus populations show clear variability in their occurrence through time depending on the latitudinal position within the Drake Passage. North of the Subantarctic Front, D. dianthus first appears in the late deglaciation (~17,000 years ago) and persists to today. South of the Polar Front, in contrast, early deglacial periods, with a few modern occurrences. A seamount site between the two fronts exhibits characteristics similar to both the northern and southern sites. This shift across the frontal zones within one species cannot yet be fully explained, but it is likely to be linked to changes in surface productivity, subsurface oxygen concentrations, and carbonate saturation state. (2) at locations where multiple genera were dated, differences in age and depth distribution of the populations provide clear evidence that each genus has unique environmental requirements to sustain its population.

Deep-Sea Research Part II: Topical Studies in Ocea↗

USGS2003

Observations of large-amplitude cross-shore internal bores near the shelf break, Santa Monica Bay, CA

Two sets of moorings were deployed along a cross-shelf transect in central Santa Monica bay for four months in the winter of 1998-1999. Both sites had an array of instruments attached to tripods set on the seafloor to monitor currents over the entire water column, surface waves, near-bed temperature, water clarity and suspended sediment. A companion mooring had temperature sensors spaced approximately 10 m apart to measure temperature profiles between the surface and the seafloor. One array was deployed in 70 m of water at a site adjacent to the shelf break, just northwest of a major ocean outfall. The other was deployed on the mid shelf in 35 m of water approximately 6 km from the shelf break site. The subtidal currents in the region flowed parallel to the isobaths with fluctuating time scales around 10 days, a typical coastal-ocean pattern. However, during the falling phase of the barotropic spring tide, sets of large-amplitude, sheared cross-shore current pulses with a duration of 2-5 h were observed at the shelf break site. Currents in these pulses flowed exclusively offshore in a thin layer near the bed with amplitudes reaching 30-40 cm/s. Simultaneously, currents with amplitudes around 15-20 cm/s flowed exclusively onshore in the thicker layer between the offshore flow layer and the sea surface. The net offshore transport was about half the onshore transport. Near-surface isotherms were depressed 30-40 m. These pulses were likely internal bores generated by tidal currents. Bed stresses associated with these events exceeded 3 dynes/cm2. These amplitudes are large enough to resuspend and transport not only fine-grained material, but also medium to coarse sands from the shelf toward the slope. Consequently, the seafloor over the shelf break was swept clear of fine sediments. The data suggest that the internal bores dissipate and are reduced in amplitude as they propagate across this relatively narrow shelf. There is evidence that they reach the 35 m site, but other coastal ocean processes obscure their distinctive characteristics.

Marine Environmental Research↗

USGS2025

Sentinel imagery detects the presence of live trees following large wildfires in California

Identifying live tree presence following wildfire is important for burn damage assessments and decision making, as these trees serve as seed sources for recovery. Satellite-based remote sensing offers an efficient means to assess burn severity with products representing vegetation greenness and char/ash presence and their change from pre- to post-fire imagery. While effective at assessing burn severity (e.g. ecosystem change), there remain limitations in identifying fire refugia (surviving trees), due to the difficulty of teasing apart different green vegetation types (e.g. trees, shrubs, grasses). In this paper, we use 10 m Sentinel-2 satellite data to predict live tree presence across three sites impacted by the 2021 California fire season. We used vegetation indices (VIs) from post-fire imagery (normalized difference vegetation index [NDVI], normalized burn ratio [NBR], normalized difference water index [NDWI], visible atmospherically resistant index [VARI], and burn area index [BAI]), differential VIs from pre- and post-fire imagery (dNDVI, dNBR, RdNBR, dNDWI, dVARI), and direct reflectance bands (all bands model; visible, near-infrared, and shortwave infrared; B1–B12) to predict live tree presence via random forest modeling. To calibrate and validate the random forest models, we photointerpreted ∼2300 pixels per fire region using 2022 National Agriculture Imagery Program imagery. We performed additional field-based validation using tree presence/absence data two years post-fire ( n = 296 observations across two sites). At the site level, the all bands model outperformed the vegetation index-based models (80%–85% vs 65%–79% accuracy). Errors were mainly false positives attributed to pixels with green understory vegetation but no live trees. In cross-site inference, which involved pooling two sites for model calibration to test on the third site, the all bands model retained good performance (76%–81% accuracy). Evaluation against field survey data demonstrated a larger range of performance (50%–87% accuracy) that highlights limitations based on tree isolation and crown percent greenness. Relative to differential-based VIs, our results highlight potential advantages of using post-fire Sentinel-2 imagery and random forest modeling for identifying live tree presence and scaling to full fire extents.

California↗

USGS2010

Controls on mangrove forest‐atmosphere carbon dioxide exchanges in western Everglades National Park

We report on net ecosystem production (NEP) and key environmental controls on net ecosystem exchange (NEE) of carbon dioxide (CO 2 ) between a mangrove forest and the atmosphere in the coastal Florida Everglades. An eddy covariance system deployed above the canopy was used to determine NEE during January 2004 through August 2005. Maximum daytime NEE ranged from −20 to −25 μ mol (CO 2 ) m −2 s −1 between March and May. Respiration (R d ) was highly variable (2.81 ± 2.41 μ mol (CO 2 ) m −2 s −1 ), reaching peak values during the summer wet season. During the winter dry season, forest CO 2 assimilation increased with the proportion of diffuse solar irradiance in response to greater radiative transfer in the forest canopy. Surface water salinity and tidal activity were also important controls on NEE. Daily light use efficiency was reduced at high (>34 parts per thousand (ppt)) compared to low (<17 ppt) salinity by 46%. Tidal inundation lowered daytime R d by ∼0.9 μ mol (CO 2 ) m −2 s −1 and nighttime R d by ∼0.5 μ mol (CO 2 ) m −2 s −1 . The forest was a sink for atmospheric CO 2 , with an annual NEP of 1170 ± 127 g C m −2 during 2004. This unusually high NEP was attributed to year‐round productivity and low ecosystem respiration which reached a maximum of only 3 g C m −2 d −1 . Tidal export of dissolved inorganic carbon derived from belowground respiration likely lowered the estimates of mangrove forest respiration. These results suggest that carbon balance in mangrove coastal systems will change in response to variable salinity and inundation patterns, possibly resulting from secular sea level rise and climate change.

Florida↗

USGS2016

Multi-decadal increases in dissolved organic carbon and alkalinity flux from the Mackenzie drainage basin to the Arctic Ocean

Riverine exports of organic and inorganic carbon (OC, IC) to oceans are intricately linked to processes occurring on land. Across high latitudes, thawing permafrost, alteration of hydrologic flow paths, and changes in vegetation may all affect this flux, with subsequent implications for regional and global carbon (C) budgets. Using a unique, multi-decadal dataset of continuous discharge coupled with water chemistry measurements for the Mackenzie River, we show major increases in dissolved OC (DOC) and IC (as alkalinity) fluxes since the early 1970s, for a watershed that covers 1.8 M km 2 of northwestern Canada, and provides substantial inputs of freshwater and biogeochemical constituents to the Arctic Ocean. Over a 39-year period of record, DOC flux at the Mackenzie mouth increased by 39.3% (44.5 ± 22.6 Gmol), while alkalinity flux increased by 12.5% (61.5 ± 60.1 Gmol). Isotopic analyses and substantial increases in sulfate flux indicate that increases in alkalinity are driven by accelerating sulfide oxidation, a process that liberates IC from rock and soils in the absence of CO 2 consumption. Seasonal and sub-catchment trends suggest that permafrost thaw plays an important role in the observed increases in DOC and alkalinity: sub-catchment increases for all constituents are confined to northern, permafrost-affected regions, while observed increases in autumn to winter are consistent with documented landscape-scale changes that have resulted from changing thaw dynamics. This increase in DOC and sulfide-derived alkalinity represents a substantial intensification of land-to-ocean C mobilization, at a level that is significant within the regional C budget. The change we observe, for example, is similar to current and projected future rates of CO 2 consumption by weathering in the Mackenzie basin.

Environmental Research Letters↗

USGS2023

Hypoxia and anoxia tolerance in diploid and triploid eastern oysters at high temperature

Increasing reliance on the use of triploid oysters to support aquaculture production relies on their generally superior growth rate and meat quality over that of diploid oysters. Reports of elevated triploid mortality have generated questions about potential trade-offs between growth and tolerance to environmental stressors. These questions are particularly relevant as climate change, coastal activities, and river management impact water salinity, temperature, nutrients, pH, and oxygen levels within key estuarine oyster growing areas. In particular, the co-occurrence of warm water temperatures and low dissolved oxygen concentration (DO) events are increasingly reported in estuaries, with potentially lethal impacts on sessile, oyster resources. To investigate potential differences in DO tolerance, diploid and triploid market-sized or seed oysters were exposed to continuous normoxia (DO > 5.0 mg L –1 ), hypoxia (DO < 2.0 mg L –1 ), and anoxia (DO < 0.5 mg L –1 ) at 28°C and their mortalities were monitored. The hemolymph of the market-sized oysters was collected to measure cellular and biochemical changes in response to hypoxia and anoxia, whereas their valve movements were also measured. In general, about half of market-sized oysters died within about 1 wk under anoxia (LT 50 : 5.7–8.9 days) and within about 2 wk under hypoxia (LT 50 : 11.9–19.4 days) with diploid oysters tending to die faster than triploid oysters. Seed oysters took longer to die than market-sized oysters under both anoxia (LT 50 : 9.5–12.1 days) and hypoxia (LT 50 : 21.8–25.0 days) with diploid oysters (LT 50 : 9.5–11.8 days) dying slightly faster than triploid oysters (LT 50 : 11.8–12.1 days) under anoxia. Hemolymph pH decreased and plasma calcium and glutathione concentrations increased with decreasing DO, with values under anoxia being different than those under normoxia. Hemocyte density was also lower under anoxia than under either normoxia or hypoxia. Overall, few differences in physiological responses to hypoxia and anoxia were found between diploid and triploid oysters suggesting that ploidy (2N versus 3N) had limited effect on the tolerance and response of eastern oysters to low DO.

Journal of Shellfish Research↗

USGS1998

Environmental impacts on the southern Florida coastal waters: A history of change in Florida Bay

Analyses of four cores located in the northern transitional, eastern, and central portions of Florida Bay reveal historical patterns of change in salinity and seagrass distribution. Salinity and the distribution of seagrass beds are two critical issues for the restoration of Florida Bay. The distribution of benthic fauna in Bob Allen 6A and Russell Bank 19B cores illustrates changes in environmental parameters prior to 1900. Natural fluctuations occur in salinity, but the amplitude of those fluctuations was limited to a 15–20% shift about the mean. Subtle changes occur in the benthic fauna around 1910, but beginning around 1940, the pattern of salinity fluctuation departs substantially from the pre-1900 pattern. Post-1940, the salinity oscillates 40–60% about the mean. This pattern is seen in all indicators measured. Around 1970, a significant but short term decline occurred in salinity. The Taylor Creek T24 core from the northern transitional zone reflects changes in freshwater flow that have occurred during this century. The upper portion of the core records a significant increase in salinity, with a slight decrease occurring in recent years. The Pass Key 37 core represents an area of very high sedimentation rates; an increase in salinity occurs in the upper portion of the core. Natural fluctuations in seagrass distribution are inferred from the shifts in relative abundance of epiphytal species preserved in the cores. All four cores show an increase in epiphytes and therefore in seagrass coverage during this century. An increase also occurs in epiphytal species that can dwell on either Thalassia or macro-algal mats associated with Thalassia beds. These data suggest an increase in algal-mats has occurred during this century. The Bob Allen 6A core records an extensive period during the 1800's of little to no vegetative cover of the substrate based on the near absence of epiphytic species in that segment of the core. Following this period, the epiphytal species increase rapidly in abundance, implying that vegetation may have the ability to disseminate rapidly.

Florida↗

USGS2018

Contaminants in tropical island streams and their biota

Environmental contamination is problematic for tropical islands due to their typically dense human populations and competing land and water uses. The Caribbean island of Puerto Rico (USA) has a long history of anthropogenic chemical use, and its human population density is among the highest globally, providing a model environment to study contaminant impacts on tropical island stream ecosystems. Polycyclic Aromatic Hydrocarbons, historic-use chlorinated pesticides, current-use pesticides, Polychlorinated Biphenyls (PCBs), and metals (mercury, cadmium, copper, lead, nickel, zinc, and selenium) were quantified in the habitat and biota of Puerto Rico streams and assessed in relation to land-use patterns and toxicological thresholds. Water, sediment, and native fish and shrimp species were sampled in 13 rivers spanning broad watershed land-use characteristics during 2009–2010. Contrary to expectations, freshwater stream ecosystems in Puerto Rico were not severely polluted, likely due to frequent flushing flows and reduced deposition associated with recurring flood events. Notable exceptions of contamination were nickel in sediment within three agricultural watersheds (range 123–336 ppm dry weight) and organic contaminants (PCBs, organochlorine pesticides) and mercury in urban landscapes. At an urban site, PCBs i n several fish species (Mountain Mullet Agonostomus monticola [range 0.019–0.030 ppm wet weight] and American Eel Anguilla rostrata [0.019–0.031 ppm wet weight]) may pose human health hazards, with concentrations exceeding the U.S. Environmental Protection Agency (EPA) consumption limit for 1 meal/month. American Eel at the urban site also contained dieldrin (range < detection-0.024 ppm wet weight) that exceeded the EPA maximum allowable consumption limit. The Bigmouth Sleeper Gobiomorous dormitor , an important piscivorus sport fish, accumulated low levels of organic contaminants in edible muscle tissue (due to its low lipid c ontent) and may be most suitable for human consumption island-wide; only mercury at one site (an urban location) exceeded EPA's consumption limit of 3 meals/month for this species. These results comprise the first comprehensive island-wide contaminant assessment of Puerto Rico streams and biota and provide natural resource and public health agencies here and in similar tropical islands elsewhere with information needed to guide ecosystem and fisheries conservation and management and human health risk assessment.

Environmental Research↗

USGS2010

Temporal and spatial distribution of endangered juvenile Lost River and shortnose suckers in relation to environmental variables in Upper Klamath Lake, Oregon: 2009 annual data summary

Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) were listed as endangered in 1988 for a variety of reasons including apparent recruitment failure. Upper Klamath Lake, Oregon, and its tributaries are considered the most critical remaining habitat for these two species. Age-0 suckers are often abundant in Upper Klamath Lake throughout the summer months, but catches decline dramatically between late August and early September each year. Similar declines of age-1 suckers between spring and late summer also occur annually. These rapid declines in catch rates and a lack of substantial recruitment into adult sucker populations in recent years suggests sucker populations experience high mortality between their first summer and first spawn. Summer age-0 sucker habitat use and distribution have been studied extensively, but many uncertainties remain about age-1 and older juvenile habitat use, distribution, and movement patterns within Upper Klamath Lake. This study was designed to examine seasonal changes in distribution of age-1 suckers in Upper Klamath Lake as they relate to depth and water quality. The results of our third annual spring and summer sampling effort are presented in this report. Catch data collected in 2009 indicate seasonal changes in age-1 and older juvenile sucker habitat use coincident with changes in water quality. Although age-1 sucker catch rates were again concentrated along the western shore in June and early July, as they were in 2007 and 2008, very few age-1 suckers were captured in Eagle Ridge Trench in 2009 - a deepwater area along the western shore extending from Howard Bay to Eagle Ridge Point. Instead, suckers in 2009 were concentrated in the relatively shallow bays along the western shore. Nevertheless, as dissolved-oxygen concentrations decreased in mid-July below sublethal thresholds around the Eagle Ridge Trench, age-1 suckers apparently moved away from the western shore, and subsequently were captured in main lake areas and the eastern shore. Age-1 suckers were noticeably absent from the tributaries of Upper Klamath Lake during periods of chronically low dissolved-oxygen concentrations in the lake, refuting a previously untested hypothesis that tributaries were important age-1 sucker refuge habitats. In addition, declines in overall catch rates for age-1 suckers in August and September, despite intensive sampling, indicates that the apparent declines in abundance may be due to increased mortality and not due to sampling the wrong environments or poor detection probability. The remote detection of an age-1 juvenile sucker tagged in Short Creek and subsequently recaptured in the Link River array, more than 30 kilometers away, indicates the capacity of juvenile suckers to migrate relatively long distances. This knowledge, coupled with other remotely detected suckers in the Williamson River, indicates that juvenile sucker movement in Upper Klamath Lake may be common. In order to better quantify movement and potentially survival, future research should focus on tagging more juvenile suckers and taking advantage of the significant passive integrated transponder tag infrastructure throughout Upper Klamath Lake and its tributaries. In this data summary, we also describe the distribution of age-0 suckers in Upper Klamath Lake and its tributaries. These data corroborate findings from 2007 and 2008, which describe age-0 sucker habitat as shallow relative to depths available in Upper Klamath Lake. Similar to age-1 suckers, age-0 sucker abundances also appeared to decline in late summer, despite continued sampling throughout Upper Klamath Lake and its tributaries. In addition to low dissolved-oxygen concentrations, increased opercle deformity and anchor worm (Lernaea spp.) infection rates, as well as increased abundances of fathead minnows and other piscivorous non-native fish, may provide potential insight into the causes of juvenile sucker rarity. Opercle deformity r

Open-File Report↗

USGS2015

Multimodel analysis of anisotropic diffusive tracer-gas transport in a deep arid unsaturated zone

Gas transport in the unsaturated zone affects contaminant flux and remediation, interpretation of groundwater travel times from atmospheric tracers, and mass budgets of environmentally important gases. Although unsaturated zone transport of gases is commonly treated as dominated by diffusion, the characteristics of transport in deep layered sediments remain uncertain. In this study, we use a multimodel approach to analyze results of a gas-tracer (SF 6 ) test to clarify characteristics of gas transport in deep unsaturated alluvium. Thirty-five separate models with distinct diffusivity structures were calibrated to the tracer-test data and were compared on the basis of Akaike Information Criteria estimates of posterior model probability. Models included analytical and numerical solutions. Analytical models provided estimates of bulk-scale apparent diffusivities at the scale of tens of meters. Numerical models provided information on local-scale diffusivities and feasible lithological features producing the observed tracer breakthrough curves. The combined approaches indicate significant anisotropy of bulk-scale diffusivity, likely associated with high-diffusivity layers. Both approaches indicated that diffusivities in some intervals were greater than expected from standard models relating porosity to diffusivity. High apparent diffusivities and anisotropic diffusivity structures were consistent with previous observations at the study site of rapid lateral transport and limited vertical spreading of gas-phase contaminants. Additional processes such as advective oscillations may be involved. These results indicate that gases in deep, layered unsaturated zone sediments can spread laterally more quickly, and produce higher peak concentrations, than predicted by homogeneous, isotropic diffusion models.

California, Nevada↗

USGS2020

Exploring the exceptional performance of a deep learning stream temperature model and the value of streamflow data

Stream water temperature ( T s ) is a variable of critical importance for aquatic ecosystem health. T s is strongly affected by groundwater-surface water interactions which can be learned from streamflow records, but previously such information was challenging to effectively absorb with process-based models due to parameter equifinality. Based on the long short-term memory (LSTM) deep learning architecture, we developed a basin-centric lumped daily mean T s model, which was trained over 118 data-rich basins with no major dams in the conterminous United States, and showed strong results. At a national scale, we obtained a median root-mean-square error of 0.69°C, Nash–Sutcliffe model efficiency coefficient of 0.985, and correlation of 0.994, which are marked improvements over previous values reported in literature. The addition of streamflow observations as a model input strongly elevated the performance of this model. In the absence of measured streamflow, we showed that a two-stage model could be used, where simulated streamflow from a pre-trained LSTM model ( Q sim ) still benefited the T s model even though no new information was brought directly into the inputs of the T s model. The model indirectly used information learned from streamflow observations provided during the training of Q sim , potentially to improve internal representation of physically meaningful variables. Our results indicate that strong relationships exist between basin-averaged forcing variables, catchment attributes, and T s that can be simulated by a single model trained by data on the continental scale.

Environmental Research Letters↗

USGS2014

Mercury in fishes from 21 national parks in the Western United States: inter- and intra-park variation in concentrations and ecological risk

Mercury (Hg) is a global contaminant and human activities have increased atmospheric Hg concentrations 3- to 5-fold during the past 150 years. This increased release into the atmosphere has resulted in elevated loadings to aquatic habitats where biogeochemical processes promote the microbial conversion of inorganic Hg to methylmercury, the bioavailable form of Hg. The physicochemical properties of Hg and its complex environmental cycle have resulted in some of the most remote and protected areas of the world becoming contaminated with Hg concentrations that threaten ecosystem and human health. The national park network in the United States is comprised of some of the most pristine and sensitive wilderness in North America. There is concern that via global distribution, Hg contamination could threaten the ecological integrity of aquatic communities in the parks and the wildlife that depends on them. In this study, we examined Hg concentrations in non-migratory freshwater fish in 86 sites across 21 national parks in the Western United States. We report Hg concentrations of more than 1,400 fish collected in waters extending over a 4,000 kilometer distance, from Alaska to the arid Southwest. Across all parks, sites, and species, fish total Hg (THg) concentrations ranged from 9.9 to 1,109 nanograms per gram wet weight (ng/g ww) with a mean of 77.7 ng/g ww. We found substantial variation in fish THg concentrations among and within parks, suggesting that patterns of Hg risk are driven by processes occurring at a combination of scales. Additionally, variation (up to 20-fold) in site-specific fish THg concentrations within individual parks suggests that more intensive sampling in some parks will be required to effectively characterize Hg contamination in western national parks. Across all fish sampled, only 5 percent had THg concentrations exceeding a benchmark (200 ng/g ww) associated with toxic responses within the fish themselves. However, Hg concentrations in 35 percent of fish sampled were above a benchmark for risk to highly sensitive avian consumers (90 ng/g ww), and THg concentrations in 68 percent of fish sampled were above exposure levels recommended by the Great Lakes Advisory Group (50 ng/g ww) for unlimited consumption by humans. Of the fish assessed for risk to human consumers (that is, species that are large enough to be consumed by recreational or subsistence anglers), only one individual fish from Yosemite National Park had a muscle Hg concentration exceeding the benchmark (950 ng/g ww) at which no human consumption is advised. Zion, Capital Reef, Wrangell-St. Elias, and Lake Clark National Parks all contained sites in which most fish exceeded benchmarks for the protection of human and wildlife health. This finding is particularly concerning in Zion and Capitol Reef National Parks because the fish from these parks were speckled dace, a small, invertebrate-feeding species, yet their Hg concentrations were as high or higher than those in the largest, long-lived predatory species, such as lake trout. Future targeted research and monitoring across park habitats would help identify patterns of Hg distribution across the landscape and facilitate management decisions aimed at reducing the ecological risk posed by Hg contamination in sensitive ecosystems protected by the National Park Service.

Alaska;Arizona;California;Colorado;Idaho;Montana;N↗

USGS2013

Bridging groundwater models and decision support with a Bayesian network

Resource managers need to make decisions to plan for future environmental conditions, particularly sea level rise, in the face of substantial uncertainty. Many interacting processes factor in to the decisions they face. Advances in process models and the quantification of uncertainty have made models a valuable tool for this purpose. Long-simulation runtimes and, often, numerical instability make linking process models impractical in many cases. A method for emulating the important connections between model input and forecasts, while propagating uncertainty, has the potential to provide a bridge between complicated numerical process models and the efficiency and stability needed for decision making. We explore this using a Bayesian network (BN) to emulate a groundwater flow model. We expand on previous approaches to validating a BN by calculating forecasting skill using cross validation of a groundwater model of Assateague Island in Virginia and Maryland, USA. This BN emulation was shown to capture the important groundwater-flow characteristics and uncertainty of the groundwater system because of its connection to island morphology and sea level. Forecast power metrics associated with the validation of multiple alternative BN designs guided the selection of an optimal level of BN complexity. Assateague island is an ideal test case for exploring a forecasting tool based on current conditions because the unique hydrogeomorphological variability of the island includes a range of settings indicative of past, current, and future conditions. The resulting BN is a valuable tool for exploring the response of groundwater conditions to sea level rise in decision support.

Water Resources Research↗

USGS2016

Osmoregulatory physiology and rapid evolution of salinity tolerance in threespine stickleback recently introduced to fresh water

Background: Post-Pleistocene diversification of threespine stickleback in fresh water offers a valuable opportunity to study how changes in environmental salinity shape physiological evolution in fish. In Alaska, the presence of both ancestral oceanic populations and derived landlocked populations, including recent lake introductions, allows us to examine rates and direction of evolution of osmoregulation following halohabitat transition. Hypotheses: Strong selection for enhanced freshwater tolerance will improve survival of recently lake-introduced stickleback in ion-poor conditions compared with their oceanic ancestors. Trade-offs between osmoregulation in fresh water and seawater will allow members of the ancestral population to survive better in response to seawater challenge, as mediated by upregulating salt-secreting transporters in the gill. Poorer hypo-osmoregulatory performance of derived fish will be marked by higher levels of taurine and other organic osmolytes. Methods: We reared clutches at a common salinity from an anadromous and a descendant population, Scout Lake, which has been landlocked for only two generations. We challenged 6-week-old juveniles with extreme low and high salinity treatments and sampled fish over 10 days to investigate putative molecular mechanisms underlying differences in halotolerance. We measured whole-body organic osmolyte content as well as gill Na + /K + -ATPase (NKA) activity and Na + /K + /2Cl − cotransporter (NKCC) protein abundance. Other juveniles from these populations and also from Cheney Lake, a fourth-generation landlocked descendant, were gradually salt-acclimated to determine maximum halotolerance limits. Results: Scout Lake stickleback exhibited 67% higher survival in fresh water than the ancestral anadromous population, but individuals from both groups exhibited similar seawater tolerance. Likewise, the gradual salinity threshold for each population was equivalent (71 ppt). Gill NKA activity and NKCC abundance were both higher in seawater-challenged fish, but did not differ between populations. Sticklebacks from both populations responded to acute salinity stress by transiently increasing osmolyte levels in seawater and decreasing them in fresh water. Conclusion: Enhanced freshwater tolerance has evolved rapidly in recently landlocked stickleback compared with their anadromous ancestors (0.569 haldanes), but the former have retained ancestral seawater-osmoregulatory function.

Evolutionary Ecology Research↗

USGS2007

Modern foraminiferal facies in a subtropical estuarine channel, Bertioga, São Paulo, Brazil

Numerical analyses of modern foraminiferal abundance and environmental data from the Bertioga Channel (Sa??o Paulo, Brazil) reveal multiple biofacies within an overall paralic setting. Despite its fisheries, mariculture and attraction to tourists, the environmental state of Bertioga Channel remains poorly studied. The present investigation is an attempt to partly fill this gap; the parameters examined include depth, salinity, temperature, organic carbon, sulfur content and bottom sediment type. Muddy sediments with high organic carbon content derived from land drainage are found in the inner parts of the channel, whereas sandy sediment dominates the areas adjacent to the Atlantic Ocean. In the eastern entrance to the channel, sandy sediment contain species of Rotaliida from Facies 1 (including Elphidium discoidale, Elphidium poeyanum, Hanzawaia boueana, Pararotalia cananeiaensis and Nonionella atlantica), reflecting normal marine salinity. Sediments with high percentages of silt and clay in polyhaline and eurybaline environments of the eastern part and Itapanhau?? River contain Facies 2, which includes Ammonia beccarii and Pararotalia cananeiaensis. In the western entrance and central, western and eastern parts, where salinities vary from 18 to 30 psu and the sediments contain both low and high organic carbon, the foraminifera from Facies 3 are dominated by Quinqueloculina milletti, Arenoparrella mexicana, Pararotalia cananeiaensis, Ammonia beccarii, Buliminella elegantissima, Elphidium sp., Elphidium excavatum, Elphidium gunteri and Elphidium poeyanum. In mesohaline and polyhaline waters of the central part, the organic-carbon-rich silt and clay contain Facies 4, which includes Ammonia beccarii, Pararotalia cananeiaensis, Elphidium excavatum and Elphidium sp. Most of organic-carbon-enriched, silty-clay substrates that are subject to the highest fresh-water discharge and high bottom temperatures support two different assemblages: one of mostly Rotaliina and the other mostly of Textulariida (Facies 5 and 6). Facies 5 includes Ammonia beecarii, Elphidium excavatum, Arenoparrella mexicana, Haplophragmoides wilberti, Siphotrochammina lobata, Trochammina inflata and Trochammina sp., all of which are typical of mesohaline sites (mainly Crumau?? and Trindade rivers), and Facies 6 includes Bolivina sp., Ammoastuta salsa, Arenoparrella mexicana, Haplophragmoides wilberti and Trochammina sp., all of which are typical of oligohaline and mesohaline mangrove fringes. The foraminiferal species from the present study are frequently found in paralic environments in Brazil, western Africa and other estuaries around the world.

Journal of Foraminiferal Research↗