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At least 1,189 records · Page 66Linked to original sources
USGS2017

Experimental stocking of sport fish in the regulated Tallapoosa River to determine critical periods for recruitment

The stocking of fish in riverine systems to re-establish stocks for conservation and management appears limited to a few species and often occurs in reaches impacted by impoundments. Stocking of sport fish species such as centrarchids and ictalurids is often restricted to lentic environments, although stocking in lotic environments is feasible with variable success. R. L. Harris Dam on the Tallapoosa River, Alabama is the newest and uppermost dam facility on the river (operating since 1983); flows from the dam have been managed adaptively for multiple stakeholder objectives since 2005. One of the stakeholders’ primary objectives is to provide quality sport fisheries in the Tallapoosa River in the managed area below the dam. Historically, ictalurids and cyprinids dominated the river above Lake Martin. However, investigations after Harris Dam closed have detected a shift in community structure to domination by centrarchids. Flow management (termed the Green Plan) has been occurring since March 2005; however, sport fish populations as measured by recruitment of age-1 sport fishes below the dam has not responded adequately to flow management. The objectives of this research were to: (1) determine if stocking Channel Catfish Ictalurus punctatus and Redbreast Sunfish Lepomis auritus influences year-class strength; (2) estimate vital rates (i.e. growth, mortality, and recruitment) for Channel Catfish populations for use in an age-based population model; and (3) identify age-specific survivorship and fecundity rates contributing to Channel Catfish population stability. No marked Redbreast Sunfish were recaptured due to poor marking efficacy and therefore no further analysis was conducted with this species. Stocked Channel Catfish, similarly, were not recaptured, leaving reasons for non-recapture unknown. Matrix models exploring vital rates illustrated survival to age-1 for Channel Catfish to be less than 0.03% and that survival through ages 2 – 4 had equal contribution to overall population growth, indicating recruitment limitation may impact population size and stability. Results from this study indicate stock enhancement of sport fish populations below Harris Dam may not be an effective management technique at this time.

Alabama↗
USGS2001

The influence of photoperiod and temperature on the Neosho Madtom (norturus placidus) reproductive cycle

The key to successful fish culture is to understand the environmental cues that trigger spawning. In temperate fishes, photoperiod and temperature are important in many species including the family Ictaluridae. The object of this study was to examine whether natural photo-thermal conditions in the laboratory could stimulate the reproductive cycle of Neosho madtoms (Noturus placidus). For three years a small population of Neosho madtoms were maintained under natural conditions and continually sampled using ultrasound to examine interior gonad state and exterior body measurements. The purpose was to examine the secondary sexual characteristics that normally occur during the spawning period. Every year the fish cycled in and out of spawning condition, including production and reabsorbtion of eggs. The best external measurement found to distinguish between sexes was the ratio of head length to total length. Internal measurements found the average number of eggs per female increased as the fish length increased and over time but the average sizes of the eggs were constant. After years in the simulated environment 13 different fish were involved in ten spawns. The use of ultrasound to examine gonad in madtoms is promising, especially the lack of injury associated with the procedure. Overall laboratory conditions that simulated the natural photo-thermal environment, especially daily temperature fluctuations, were successful at stimulating the reproductive cycle of Neosho madtoms including egg cycling and spawning. These results show promise towards culture of madtoms especially for those species that are rare and endangered.

Report↗
USGS2007

First documentation of tidal-channel sponge biostromes (upper Pleistocene, southeastern Florida)

Sponges are not a common principal component of Cenozoic reefs and are more typically dominant in deep-water and/or cold-water localities. Here we report the discovery of extensive upper Pleistocene shallow-marine, tropical sponge biostromes from the Mami Limestone of southeastern Florida built by a new ceractinomorph demosponge. These upright, barrel- to vase-shaped sponges occur in monospecific aggregations constructed within the tidal channels of an oolitic tidal-bar belt similar to modern examples on the Great Bahama Bank. The biostromes appear to have a ribbon-like geometry, with densely spaced sponges populating a paleochannel along a 3.5 km extent in the most lengthy biostrome. These are very large (as high as 2 m and 1.8 m in diameter), particularly well-preserved calcified sponges with walls as hard as concrete. Quartz grains are the most common particles agglutinated in the structure of the sponge walls. Where exposed, sediment fill between the sponges is commonly a highly burrowed or cross-bedded ooid-bearing grainstone and, locally, quartz sand. It is postulated that the dense, localized distribution of these particular sponges was due to a slight edge over competitors for food or energy supply and space in a stressed environment of tidal-influenced salinity and nutrient changes, strong currents, and frequently shifting submarine sand dunes. To our knowledge, this represents the first documentation of sponge biostromes composed of very large upright sponges within high-energy tidal channels between ooid shoals. The remarkably well-preserved accumulations provide an alternative example of sponge reefs for comparative paleoenvironmental studies. ?? 2007 The Geological Society of America.

Geology↗
USGS2004

Thermal characteristics of wild and captive Micronesian Kingfisher nesting habitats

To provide information for managing the captive population of endangered Guam Micronesian kingfishers ( Halcyon cinnamomina cinnamomina ), four biologically relevant thermal metrics were compared among captive facilities on the United States mainland and habitats used by wild Micronesian kingfishers on the island of Pohnpei ( H. c. reichenbachii ), Federated States of Micronesia. Additionally, aviaries where kingfishers laid eggs were compared to those in which birds did not attempt to breed. Compared to aviaries, habitats used by wild Pohnpei kingfishers had 3.2°C higher daily maximum and minimum temperatures and the proportion of time when temperatures were in the birds' thermoneutral zone was 45% greater. No differences were found in the magnitude of temperature fluctuation in captive and wild environments. In captive environments in which birds bred, daily maximum temperatures were 2.1°C higher and temperatures were within the thermoneutral zone 25% more often than in the aviaries where the kingfishers did not breed. No differences were found in the magnitude of temperature fluctuation or the daily minimum temperature. Results suggest that the thermal environment has the potential to influence reproduction, and that consideration should be given to increasing temperatures in captive breeding facilities to improve propagation of the endangered Micronesian kingfisher.

Pohnpei↗
USGS2014

Comparison of radio-telemetric home range analysis and acoustic detection for Little Brown Bat habitat evaluation

With dramatic declines of bat populations due to mortality caused by Pseudogymnoascus destructans (White-nose Syndrome), assessing habitat preferences of bats in the northeastern US is now critical to guide the development of regional conservation efforts. In the summer of 2012, we conducted fixed-station simultaneous telemetry to determine nocturnal spatial use and fixed-kernel home-range estimates of available habitat of a Myotis lucifugus (Le Conte) (Little Brown Bat) maternity colony in an artificial bat house. In summers of 2011 and 2012, we also deployed a 52-ha grid of 4 × 4 Anabat acoustic detectors over five 6–8-day sampling periods in various riparian and non-riparian environments in close proximity to the same bat house. The mean telemetry home range of 143 ha for bats ( n = 7) completely overlapped the acoustic grid. Rankings of habitats from telemetry data for these 7 bats and 5 additional bats not included in home-range calculations but added for habitat-use measures ( n = 13) revealed a higher proportional use of forested riparian habitats than other types at the landscape scale. Pair-wise comparisons of habitats indicated that bats were found significantly closer to forested riparian habitats and forests than to open water, developed areas, fields, shrublands, or wetland habitats at the landscape scale. Acoustic sampling showed that naïve occupancy was 0.8 and 0.6 and mean nightly detection probabilities were 0.23 and 0.08 at riparian and non-riparian sites, respectively. Our findings suggest that Little Brown Bats select forested riparian and forested habitats for foraging at the landscape scale but may be most easily detected acoustically at riparian sites when a simple occupancy determination for an area is required.

Northeastern Naturalist↗
USGS2017

Datasheet: Pseudogymnoascus destructans (white-nose syndrome fungus)

Pseudogymnoascus destructans is a psychrophilic (cold-loving) fungus that causes white-nose syndrome (WNS), an emerging disease of North American bats that has caused unprecedented population declines. The fungus is believed to have been introduced to North America from Europe or Asia (where it is present but does not cause significant mortality), but the full extent of its native range is unknown. The route of introduction is also unknown. In North America, hibernating bats become infected with P. destructans when body temperature decreases during winter torpor into the range permissive for growth of this fungus. Infected bats may develop visible fungal growth on the nose or wings, awaken more frequently from torpor, and experience a cascade of physiologic changes that result in weight loss, dehydration, electrolyte imbalances, and death. P. destructans persists in the environments of underground bat hibernation sites (hibernacula) and is believed to spread primarily by natural movements of infected bats. The first evidence of WNS in North America is from a photograph of a hibernating bat taken during winter of 2005-2006 in a hibernaculum near Albany, New York. P. destructans subsequently spread rapidly from the northeastern United States throughout much of the eastern portions of the United States and Canada, and most recently (as of May 2017) was detected in Washington State. It has killed millions of bats, threatening some species with regional extirpation and putting at risk the valuable environmental services that bats provide by eating harmful insects.

Book chapter↗
USGS2021

From satellites to frogs: Quantifying ecohydrological change, drought mitigation, and population demography in desert meadows

Increasing frequency and severity of droughts have motivated natural resource managers to mitigate harmful ecological and hydrological effects of drought, but drought mitigation is an emerging science and evaluating its effectiveness is difficult. We examined ecohydrological responses of drought mitigation actions aimed at conserving populations of the Columbia spotted frog ( Rana luteiventris ) in a semi-arid valley in Nevada, USA. Abundance of this rare frog had declined precipitously after multiple droughts. Mitigation included excavating ponds to increase available surface water and installing earthen dams to raise water tables. We assessed responses of riparian vegetation to mitigation using a 30-year time series of satellite-derived Normalized Difference Vegetation Index (NDVI) and gridded weather data. We then analyzed a 23-year mark-recapture dataset to evaluate the effects of drought mitigation and NDVI on the probability of frog survival and rates of recruitment. After accounting for interannual precipitation variability, we found that NDVI increased significantly from before to after drought mitigation, suggesting that mitigation influenced the hydrology and vegetation of the meadows. Frog survival increased with NDVI, but mitigation had a stronger effect than NDVI suggesting that excavated mitigation ponds were particularly important for frog survival during drought. In contrast, frog recruitment was associated with NDVI more than mitigation, but only in meadows where NDVI was dependent on precipitation. At meadows with available groundwater, recruitment was associated with mitigation ponds. These findings suggest that mitigation ponds are critical for juvenile frogs to recruit into the adult population, but recruitment can also be increased by raising water tables in meadows lacking groundwater sources. Lagged recruitment (i.e., effects on larvae and juveniles) was negatively associated with NDVI. This study illustrates the ecohydrological complexity of drought mitigation and demonstrates novel ways to assess the effectiveness of drought mitigation using time series of readily available satellite imagery and organismal data.

Nevada↗
USGS2006

Estimating background and threshold nitrate concentrations using probability graphs

Because of the ubiquitous nature of anthropogenic nitrate (NO 3-) in many parts of the world, determining background concentrations of NO3- in shallow ground water from natural sources is probably impossible in most environments. Present-day background must now include diffuse sources of NO3- such as disruption of soils and oxidation of organic matter, and atmospheric inputs from products of combustion and evaporation of ammonia from fertilizer and livestock waste. Anomalies can be defined as NO3- derived from nitrogen (N) inputs to the environment from anthropogenic activities, including synthetic fertilizers, livestock waste, and septic effluent. Cumulative probability graphs were used to identify threshold concentrations separating background and anomalous NO3-N concentrations and to assist in the determination of sources of N contamination for 232 spring water samples and 200 well water samples from karst aquifers. Thresholds were 0.4, 2.5, and 6.7 mg/L for spring water samples, and 0.1, 2.1, and 17 mg/L for well water samples. The 0.4 and 0.1 mg/L values are assumed to represent thresholds for present-day precipitation. Thresholds at 2.5 and 2.1 mg/L are interpreted to represent present-day background concentrations of NO3-N. The population of spring water samples with concentrations between 2.5 and 6.7 mg/L represents an amalgam of all sources of NO3- in the ground water basins that feed each spring; concentrations >6.7 mg/L were typically samples collected soon after springtime application of synthetic fertilizer. The 17 mg/L threshold (adjusted to 15 mg/L) for well water samples is interpreted as the level above which livestock wastes dominate the N sources. Copyright ?? 2006 The Author(s).

Ground Water↗
USGS2014

Effects of fine sediment, hyporheic flow, and spawning site characteristics on survival and development of bull trout embryos

Successful spawning is imperative for the persistence of salmonid populations, but relatively little research has been conducted to evaluate factors affecting early life-stage survival for bull trout ( Salvelinus confluentus ), a threatened char. We conducted a field experiment to assess the relationship between site-specific environmental factors and bull trout embryo survival and fry emergence timing. Survival from egg to hatch was negatively related to percent fine sediment (<1 mm) in the redd and positively related to the strength of downwelling at spawning sites. Survival of eggs to fry emergence was also negatively related to fine sediment, and the best statistical models included additional variables that described the rate of downwelling and intragravel flow within the incubation environment. Fry emerged at an earlier stage in development from redds with high percentages of fine sediment. Increased hydraulic conductivity via redd construction and selection of spawning sites with strong downwelling appear to enhance hyporheic flow rates and bull trout egg survival, but early life-stage success may ultimately be limited by intrusion of fine sediment into the incubation environment.

Oregon↗
USGS2021

Individual and seasonal variation in the movement behavior of two tropical nectarivorous birds

Background Movement of animals directly affects individual fitness, yet fine spatial and temporal resolution movement behavior has been studied in relatively few small species, particularly in the tropics. Nectarivorous Hawaiian honeycreepers are believed to be highly mobile throughout the year, but their fine-scale movement patterns remain unknown. The movement behavior of these crucial pollinators has important implications for forest ecology, and for mortality from avian malaria ( Plasmodium relictum ), an introduced disease that does not occur in high-elevation forests where Hawaiian honeycreepers primarily breed. Methods We used an automated radio telemetry network to track the movement of two Hawaiian honeycreeper species, the ʻapapane ( Himatione sanguinea ) and ʻiʻiwi ( Drepanis coccinea ). We collected high temporal and spatial resolution data across the annual cycle. We identified movement strategies using a multivariate analysis of movement metrics and assessed seasonal changes in movement behavior. Results Both species exhibited multiple movement strategies including sedentary, central place foraging, commuting, and nomadism , and these movement strategies occurred simultaneously across the population. We observed a high degree of intraspecific variability at the individual and population level. The timing of the movement strategies corresponded well with regional bloom patterns of ‘ōhi‘a ( Metrosideros polymorpha ) the primary nectar source for the focal species. Birds made long-distance flights, including multi-day forays outside the tracking array, but exhibited a high degree of fidelity to a core use area, even in the non-breeding period. Both species visited elevations where avian malaria can occur but exhibited little seasonal change in elevation (< 150 m) and regularly returned to high-elevation roosts at night. Conclusions This study demonstrates the power of automated telemetry to study complex and fine-scale movement behaviors in rugged tropical environments. Our work reveals a system in which birds can track shifting resources using a diverse set of movement behaviors and can facultatively respond to environmental change. Importantly, fidelity to high-elevation roosting sites minimizes nocturnal exposure to avian malaria for far-ranging individuals and is thus a beneficial behavior that may be under high selection pressure.

Hawaii↗
USGS2020

Long-term survival of Pseudogymnoascus destructans at elevated temperatures

White-nose syndrome is an emerging fungal disease that has devastated hibernating bat populations across eastern North America. The causal pathogen, Pseudogymnoascus destructans (PD), is a psychrophilic fungus with a known maximal growth temperature of 20 C. Although it is widely speculated that PD is primarily spread between hibernacula by the movement of bats, experimental evidence is lacking to demonstrate that PD can endure temperatures experienced by active bats for periods of time that would facilitate dispersal of viable fungus. We used an in vitro culture-based approach to study the survival of PD conidia on three artificial growth media and bat fur. The fungus was incubated at three temperatures it might realistically be exposed to on nonhibernating bats or in the environment outside of caves and mines (24 C, 30 C, and 37 C). When incubated on artificial media, we found that PD conidia were able to survive for a maximum of 150 d when exposed to temperatures of 24 C, 60 d at 30 C, and 15 d at 37 C. At all temperatures, maximal survival duration was recorded when conidia were incubated on brain–heart infusion agar with 10% volume of sheep ( Ovis aries ) blood. When incubated on bat fur, viable PD was recovered at 180 d, 60 d, and 5 d when exposed to temperatures of 24 C, 30 C, and 37 C, respectively. Our results suggest that viable PD conidia may be able to survive on or within the bodies of bats, which may facilitate long-distance dispersal. The long-term viability of the fungus on various fomites may differ, and therefore must be assessed for each potential substrate.

Journal of Wildlife Diseases↗
USGS2021

Thermal stability of an adaptable, invasive ectotherm: Argentine giant tegus in the Greater Everglades ecosystem, USA

Invasive species globally threaten biodiversity and economies, but the ecophysiological mechanisms underlying their success are often understudied. For those alien species that also exhibit high phenotypic plasticity, such as habitat generalists, adaptations in response to environmental pressures can take place relatively quickly. The Argentine giant tegu ( Salvator merianae ; tegu) is a large omnivorous lizard from South America that is prolific, long-lived, vagile, and highly adaptable to disturbed environments. They are well suited to the climate of southeastern United States, introduced to several disjunct areas, including the Everglades, where their voracious appetite threatens native wildlife. Tegus undergo winter dormancy (hibernation) to cope with colder temperatures, and while this behavior may facilitate invasion into more temperate regions, it may also present management opportunities. We studied the thermal habits of wild S. merianae within their invaded range in southern Florida, USA. We used radiotelemetry and trail cameras to verify aboveground behaviors, and temperature dataloggers to monitor surface (sun-exposed [ T e ] and shaded [ T s ]), ambient ( T a ), subsurface ground ( T h ), and internal body ( T b ) temperatures of a population of free-ranging tegus over several seasons. We evaluated thermal and behavioral data and identified five biologically significant periods: pre-hibernal, hibernal, cold snaps, hibernal-basking, and post-hibernal. We found tegus maintained thermal stability throughout the hibernal period, frequently at temperatures above available thermal microhabitats. Variation in T b was lowest during hibernation and cold snaps and was less variable than subsurface temperatures despite not leaving their hibernaculum. Hibernal ingress and egress were best predicted by temperature differentials between exposed soil and ambient daily mean temperatures ( T e − T a ) and daylength. Though we detected no sex differences, larger animals started hibernation sooner, stayed in hibernation longer, and retained higher fat stores over the study period. One individual did not hibernate, representing only the second record of this behavior. Despite limitations of these descriptive data, this is the first study finely detailing T b of a population of wild, free-ranging S. merianae over multiple biologically significant time periods and to associate T b with thermal habitats within its invasive range. Tegus' apparent ability for thermal stability expands the adaptability breadth of this species and underscores the invasion threat.

Florida↗
USGS2009

Is there evidence of adaptation to tidal flooding in saplings of baldcypress subjected to different salinity regimes?

Plant populations may adapt to environmental conditions over time by developing genetically based morphological or physiological characteristics. For tidal freshwater forested wetlands, we hypothesized that the conditions under which trees developed led to ecotypic difference in response of progeny to hydroperiod. Specifically, we looked for evidence of ecotypic adaptation for tidal flooding at different salinity regimes using growth and ecophysiological characteristics of two tidal and two non-tidal source collections of baldcypress (Taxodium distichum (L.) L.C. Rich) from the southeastern United States. Saplings were subjected to treatments of hydrology (permanent versus tidal flooding) and salinity (0 versus ???2 g l -1 ) for two and a half growing seasons in a greenhouse environment. Saplings from tidal sources maintained 21-41% lower overall growth and biomass accumulation than saplings from non-tidal sources, while saplings from non-tidal sources maintained 14-19% lower overall rates of net photosynthetic assimilation, leaf transpiration, and stomatal conductance than saplings from tidal sources. However, we found no evidence for growth or physiological enhancement of saplings from tidal sources to tide, or of saplings from non-tidal sources to no tide. All saplings growing under permanent flooding exhibited reduced growth and leaf gas exchange regardless of source, with little evidence for consistent salinity effects across hydroperiods. While we reject our original hypothesis, we suggest that adaptations of coastal baldcypress to broad (rather than narrow) environmental conditions may promote ecophysiological and growth enhancements under a range of global-change-induced stressors, perhaps reflecting a natural resilience to environmental change while precluding adaptations for specific flood regimes.

Environmental and Experimental Botany↗
USGS2023

Integrated analysis shows how the effects of extreme flooding events propagate through fish communities to impact amphibians

Research Highlight: Davis, C. L., Walls, S. C., Barichivich, W. J., Brown, M. E., & Miller, D. A. (2022). Disentangling direct and indirect effects of extreme events on coastal wetland communities. Journal of Animal Ecology , https://doi.org/10.1111/1365-2656.13874 . Catastrophic events such as floods, hurricanes, winter storms, droughts and wildfires increasingly touch our lives either directly or indirectly. These events draw our attention to the seriousness of changes in climate not only to human well-being but also to the integrity of ecological systems upon which we depend. Understanding the impacts of extreme events on ecological systems requires the ability to characterize the cascading effects of environmental changes on the environments in which organisms live and the altered biological interactions produced. This scientific ambition represents no small challenge for the study of animal communities, which are typically difficult to census as well as dynamic in time and space. Davis et al. (2022) in a recent study in the Journal of Animal Ecology examined the amphibian and fish communities found in depressional coastal wetlands to better understand how they respond to major rainfall and flooding events. Data from the U.S. Geological Survey's Amphibian Research and Monitoring Initiative provided an 8-year record of observations as well as environmental measurements. For this study, the authors integrated techniques for assessing the dynamics of animal populations with a Bayesian implementation of structural equation modelling. Using their integrated methodological approach permitted the authors to reveal the direct and indirect effects of extreme weather events on co-occurring amphibian and fish communities while accounting for observational uncertainty and temporal variation in population-level processes. Their findings indicate that the most prominent effects of flooding on the amphibian community were caused by changes in the fish community that led to increased predation and resource competition. In their conclusions, the authors emphasize the importance of understanding networks of abiotic and biotic effects if we are to predict and mitigate the influence of extreme weather events.

Journal of Animal Ecology↗
USGS1995

Environmental influence on life-history traits: Growth, survival, and fecundity in Black Brant ( Branta bernicla )

We studied relationships between body size of female Black Brant goslings ( Branta bernicla nigricans ) late in their growth period and first year survival, eventual adult body size, breeding propensity, and size and volume of clutches they eventually produced to examine the relationship between growth and fitness in this population. We indexed body size by calculating PC1 scores based on either culmen and tarsus, or culmen, tarsus, and mass. Gosling (PC scores based on culmen and tarsus) size was positively correlated with resighting rate (P = 0.005), indicating that larger goslings survived at a higher rate than did smaller goslings. Gosling size was correlated with adult size of the same individuals (P = 0.0004). Larger goslings were more likely to breed as 2- or 3-yr-olds than were medium or small goslings (P = 0.008). Larger adult brant laid more eggs (P = 0.03) and produced clutches with greater total volume (P = 0.03) than did smaller brant. Given the important role of foraging environment in growth of goslings, these data suggest an important role of early environment in determining life-history traits.

Alaska↗
USGS2016

Archive of bathymetry and backscatter data collected in 2014 nearshore Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana

As part of the Barrier Island Monitoring Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off Breton and Gosier Islands, Louisiana, in July and August of 2014. To assist the United States Fish and Wildlife Service (USFWS) with restoration planning efforts, the USGS was tasked with answering fundamental questions about the physical environment of the southern Chandeleur Islands, including the geology, morphology, and oceanography. Baseline data needed to answer these questions were either insufficient or missing. The USGS conducted a comprehensive geologic investigation in the summer of 2014, collecting geophysical and sedimentological data. Breton Island, located at the southern end of the Chandeleur Island chain in southeastern Louisiana, was recognized as a natural, globally significant nesting sanctuary for several bird species and was established as the Breton National Wildlife Refuge (NWR) in 1904. The areal extent of Breton Island has diminished 90 percent since 1920. Land loss is attributed to ongoing relative sea-level rise, diminished sediment supply, and storm impacts. The bird population on Breton Island has also declined over the years, most notably after Hurricane George in 1998 and after Hurricane Katrina in 2015; the latter completely submerged the island. Despite decreasing habitable acreage, migratory seabirds continue to return and nest on Breton Island. To prevent the island from being submerged in the future, and to protect, stabilize, and provide more nesting and foraging areas for the bird population, the USFWS proposed a restoration effort to rebuild Breton Island to its pre-Katrina footprint. This data series serves as an archive of processed interferometric swath and single-beam bathymetry data, and side-scan sonar data, collected in the nearshore of Breton and Gosier Islands, NWR, Louisiana. The data were collected during two USGS cruises (USGS Field Activity Numbers 2014-314-FA and 2014-317-FA) in July and August 2014. Geographic information system data products include a 100-meter-cell-size interpolated bathymetry grid, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata. NOTE: These data are scientific in nature and are not to be used for navigation. Any use of trade names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Louisiana↗
USGS2010

Short-Term Effects of the 2008 High-Flow Experiment on Macroinvertebrates in Colorado River Below Glen Canyon Dam, Arizona

Glen Canyon Dam has dramatically altered the physical environment (especially discharge regime, water temperatures, and sediment inputs) of the Colorado River. High-flow experiments (HFE) that mimic one aspect of the natural hydrograph (floods) were implemented in 1996, 2004, and 2008. The primary goal of these experiments was to increase the size and total area of sandbar habitats that provide both camping sites for recreational users and create backwaters (areas of stagnant flow in the lee of return-current eddies) that may be important as rearing habitat for native fish. Experimental flows might also positively or negatively alter the rainbow trout (Oncorhynchus mykiss) sport fishery in the clear tailwater reach below Glen Canyon Dam, Ariz., and native fish populations in downstream reaches (for example, endangered humpback chub, Gila cypha) through changes in available food resources. We examined the short-term response of benthic macroinvertebrates to the March 2008 HFE at three sites [river mile 0 (RM 0, 15.7 miles downriver from the dam), RM 62, and RM 225] along the Colorado River downstream from Glen Canyon Dam by sampling immediately before and then 1, 7, 14, and 30 days after the HFE. We selected these sites because of their importance to management; RM 0 has a valuable trout fishery, and RM 62 is the location of the largest population of the endangered humpback chub in the Grand Canyon. In addition to the short-term collection of samples, as part of parallel investigations, we collected 3 years of monthly (quarterly for RM 62) benthic macroinvertebrate samples that included 15 months of post-HFE data for all three sites, but processing of the samples is only complete for one site (RM 0). At RM 0, the HFE caused an immediate 1.75 g AFDM/m2 (expressed as grams ash-free dry mass, or AFDM) reduction of macroinvertebrate biomass that was driven by significant reductions in the biomass of the two dominant taxa in this reach-Potamopyrgus antipodarum (New Zealand mud snails) and Gammarus lacustris (scuds or side-swimmers)-and also biomass reductions of other common taxa (worms in the families Lumbricidae and Tubificidae). Invertebrate drift estimates during the HFE suggest that reductions in biomass of some taxa were because of export from the reach. Reductions in biomass of P. antipodarum and G. lacustris persisted at least 15 months after the HFE, when this study concluded, and coincided with a significant decline in the annual production of these taxa: P. antipodarum production of 11 to 13 g AFDM/m2/yr in two pre-HFE years versus 2 g AFDM/m2/yr in the post-HFE year, and G. lacustris production of 7 to 8 g AFDM/m2/yr in two pre-HFE years versus 3 g AFDM/m2/yr in the post-HFE year. There were not changes in invertebrate feeding habits in response to the HFE, as our 3-year dataset of invertebrate diets indicated no substantial changes. Our long-term analysis of the composition of the drift indicates that because of a reduction in P. antipodarum in the drift relative to digestible taxa, the quality of the drift as a food resource for fishes increased. At downstream sites, total assemblage biomass did not decline, likely because assemblages were dominated by blackflies (Simulium arcticum), which were not affected by the HFE. Similar to RM 0, G. lacustris and Tubificidae had significantly lower biomass after the HFE at RM 62 and RM 225. Chironomids were also significantly lower following the flood at both downstream sites. Our findings demonstrate that the effects of a HFE on invertebrates may persist up to at least 15 months in the clear tailwater below the dam, whereas in downstream reaches impacts were more short lived. If controlling the abundance of P. antipodarum is a goal of managers, our findings indicate that periodic HFEs on the order of every 2 to 3 years may be an effective strategy for meeting that goal. More frequent HFEs may cause a shift in the state of the benthic invertebrate assemblage of the tailwa

Open-File Report↗
USGS2022

Informing surveillance through the characterization of outbreak potential of chronic wasting disease in white-tailed deer

Understanding the role that an environmental prion reservoir plays in the outbreak dynamics of chronic wasting disease (CWD) in free ranging white-tailed deer ( Odocoileus virginianus ) is critical for the allocation of disease surveillance resources by state and provincial wildlife agencies. We hypothesized that demographic, ecological, and epidemiological configurations naturally attenuate epidemic risk despite the introduction of infectious prions into a susceptible population of deer, but the magnitude of infectious prions in the environmental prion reservoir complicate outbreak expectations. We developed a Susceptible-Latent-Exposed-Infective (SLEI) compartment model to represent the dynamics of CWD epidemics in free-ranging white-tailed deer, then used the basic reproductive ratio ( R 0 "> R0 ) to pinpoint counties under which pathogenic introduction (transport of infectious bodily fluids, tissues, and carcasses through natural or anthropogenic means) naturally produced (or failed to produce) an epidemic. We found that the outlook for an epidemic hinged on transmission rates, the magnitude of environmental contamination, and system type (density-, frequency-, or density/frequency-dependent). CWD can persistently infect individuals living in a contaminated environment even if direct transmission is insufficient to sustain circulation. Theoretical results show that transmission of CWD cannot be exclusively density dependent, and must behave as either a mix between frequency and density dependent, or strictly frequency dependent. While the compartment model is a simplistic representation of reality and did not contain many complicating biological considerations, it was immediately useful in hypothesis generation, motivating the collection of additional data for use in more biologically detailed models, and in the allocation of finite surveillance resources to place emphasis on data collection in areas where an introduction of infectious prions is comparatively more likely to result in an epidemic.

Ecological Modelling↗