Search USGS⌕ Search

SEARCH · Search USGS

Results for “Wildlife Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,171 records · Page 65Linked to original sources

Fort Collins Science Center: 2006 Accomplishments

In Fiscal Year 2006 (FY06), the U.S. Geological Survey (USGS) Fort Collins Science Center (FORT) continued research vital to U.S. Department of the Interior (DOI) science and management needs and associated USGS programmatic goals. FORT work also supported the science needs of other governmental departments and agencies as well as private cooperators. Specifically, FORT scientific research and technical assistance focused on client and partner agency needs and goals in the areas of biological information management, fisheries and aquatic systems, invasive species, status and trends of biological resources, terrestrial ecosystems, and wildlife resources. Highlights of FORT project accomplishments are described below under the USGS science program area with which each task is most closely associated.2 The work of FORT’s five branches (in 2006: Aquatic Systems and Technology Applications, Ecosystem Dynamics, Invasive Species Science, Policy Analysis and Science Assistance, and Species and Habitats of Federal Interest) often involves major partnerships with other agencies or cooperation with other USGS disciplines (Geology, Geography, Water Resources).

Open-File Report↗

Determining the pattern of cementum annuli and relationship to reproduction in male sea otters

Since the early 1990s, the southwestern Alaskan sea otter (Enhydra lutris) population has declined dramatically and the cause has yet to be determined. Population trajectories of large mammals are determined by three factors: survival rate, reproduction rate, and age of first reproduction (AFR). Of these three, AFR should respond first to environmental change. Life history theory predicts that AFR will be older with bottom-up causes (ie, food limitation) and younger when the cause of the decline is top-down (ie, predation), as there is usually abundant resources in this scenario. Traditionally, determining AFR required lethal sampling, which may not always be possible. Work on many mammalian species suggests that the width of annual cementum layers in teeth may decline when breeding begins. If so, examining teeth annuli may provide a nonlethal alternative for determining AFR. Ongoing research has shown this relationship in female sea otters, but male sea otters have not been tested. Sea otter testes and premolar teeth slides were collected by subsistence hunters working with the US Fish and Wildlife Service and the Alaska Sea Otter and Steller Sea Lion Commission from Alaska (1994– 2005). We determined the pattern in cementum annuli thickness for male sea otters across age by measuring annuli at three sites on each of the two slide sections available. We found that cementum annuli layers decreased with age, but found no correlation between cementum annuli and sexual maturity in male sea otters. This lack of correlation may be due to sampling error or different energy expenditures during reproduction for each sex. Since females expend large amounts of energy through gestation and lactation, we hypothesize that the width of female cementum annuli decreases at a much sharper rate when they reach AFR. The southwest Alaskan sea otter population has plummeted up to 90% since the early 1990s and the reason is unknown.1 Declines may be due to a bottom-up source caused by lack of food and habitat that occurs when populations are dense, in which case we would expect reproduction rates to decrease and age of first reproduction (AFR) to increase. However, circumstantial evidence suggests that the decline may be due to a top-down source, ie, predation.2 In this case, we would expect reproduction rates to increase and AFR to decrease due to lowered densities that coincide with top-down declines.3 An ongoing study of female sea otters has shown that past reproduction can be determined by analysis of cementum annuli in the teeth, and used to calculate AFR.4 Cementum annuli are annual deposits of minerals that occur on the root of a tooth that correspond to the growth of the animal (Figure 1). During summer and spring, growth is fast which accounts for the white area, but during winter, growth slows down and the cementum is compressed which accounts for a darkened line. In females, the relationship between cementum width declines and reproduction likely reflects the large expenditure of energy that is required during gestation and lactation. However, male and female mammals expend energy for reproduction in very distinct ways,3 and the same pattern of cementum decline may not be present in males. Since shifts in the life history strategy of males are poorly understood, we are interested in testing the relationship between cementum declines and reproduction in male sea otters using cementum analysis.

Ethnicity and Disease↗

Keeping the crown of the continent connected: An interagency US2 connectivity workshop report

At over 2.5 million acres, Glacier National Park and the Bob Marshall Wilderness complex form one of the largest protected areas in the continental United States. Straddling the Continental Divide, these two areas form a vital linkage between vast areas of public land to the south towards Yellowstone, and contiguous protected areas north of the US-Canada border. However, US Highway 2 (US2) and the Burlington Northern-Santa Fe (BNSF) railroad separate Glacier National Park to the north from the Bob Marshall Wilderness complex to the south. While this narrow ribbon of development passes through primarily public land, it is bordered in some areas by narrow strips of private land. Many of these private parcels are developed as ranches, campgrounds, or seasonal and permanent home sites and businesses. Currently, two of the defining characteristics of this portion of the US2 corridor are relatively low highway traffic volume, but relatively high railroad traffic volume. The highway had a 2017 annual average daily traffic volume (AADT) of 1859 vehicles, far less than other interstate highways around the region which often have AADTs well over 10,000. Conversely, the BNSF railroad line currently carries about 33 trains per day, making it one of the busier railroad lines in the northwestern US. While wildlife movement patterns across this corridor have not been well studied, the existing data suggests that wildlife can still make frequent and successful crossings at current railroad and highway traffic levels. However, as the region’s human population grows, we expect that connectivity to diminish. Over the past decade (2000-2017), based on census data, Flathead County has grown by 10% and Glacier County has grown by 1.5%. A study on loss of open space found that Flathead County alone accounts for 15% of the new homes built in Montana since 2000 (https://headwaterseconomics.org/economicdevelopment/local-studies/montana-home construction/). Outdoor recreation and tourism have also been breaking participation records (source: GPI record passengers https://flatheadbeacon.com/2018/01/24/glacier-park-international-airport-sees-record-passengers-2017/, GNP record visitation https://www.usnews.com/news/best-states/montana/articles/2018-01 15/glaciernational-park-breaks-visitation-record-in-2017). This growth has been accompanied by a ~50% increase in highway traffic volume in the corridor over the past decade (Waller and Miller 2015). This increased traffic is decreasing the time available for wildlife to cross the highway and appears to be increasing the frequency of wildlife killed by vehicles (Fig. 1 and 2). In addition, the Middle Fork of the Flathead River is a favored river for recreation, and this also appears to be growing. In the summer of 2017, researchers recorded 136 boats per day in July and 93 boats per day in August. Although the river does not extend along the entire highway, it extends along 31 miles of the highway corridor.

Montana↗

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada↗

Extreme coastal water level in Washington state: Guidance to support sea level rise planning

This document provides guidelines for assessing exposure to future coastal flooding during extreme coastal water level events – whether these are due to tides, surge, wave run-up, or, more likely, a combination of the three. These guidelines provide information about the current and future magnitude of extreme coastal water levels across Washington State and the underlying processes that influence them. This information is intended to be combined with sea level projections to assess future exposure to coastal flooding along Washington’s coastline. Although the results of our analyses can be combined with any available sea level projections, this report is intended as a companion to the localized sea level rise projections (Miller et al., 2018) developed as part of the Washington Coastal Resilience Project. The Washington Coastal Resilience Project was a three-year effort to rapidly increase the state’s capacity to prepare for sea level rise. The project aimed to improve risk projections, provide better guidelines for land use planners and strengthen capital investment programs for coastal restoration and infrastructure. Partners in the Washington Coastal Resilience Project included Washington Sea Grant, Washington Department of Ecology, Island County, King County, NOAA Office for Coastal Management, Pacific Northwest National Laboratory, Padilla Bay National Estuary Research Reserve, The City of Tacoma, The Nature Conservancy, U.S. Geological Survey, University of Oregon, University of Washington Climate Impacts Group, University of Washington Department of Earth and Space Sciences, Washington Department of Fish and Wildlife and Western Washington University. The 2018 sea level projections are described in an accompanying technical report, along with a review of the science related to sea level rise (Miller et al., 2018). The report and all associated supporting information are available on the Washington Coastal Hazards Resilience Network website (http://www.wacoastalnetwork.com/).

Washington↗

Sage-grouse population dynamics are adversely impacted by overabundant feral horses

In recent decades, feral horse ( Equus caballus ; horse) populations increased in sagebrush ( Artimesia spp.) ecosystems, especially within the Great Basin, to the point of exceeding maximum appropriate management levels (AML max ), which were set by land administrators to balance resource use by feral horses, livestock, and wildlife. Concomitantly, greater sage-grouse ( Centrocercus urophasianus ; sage-grouse) are sagebrush obligates that have experienced population declines within these same arid environments as a result of steady and continued loss of seasonal habitats. Although a strong body of research indicates that overabundant populations of horses degrade sagebrush ecosystems, empirical evidence linking horse abundance to sage-grouse population dynamics is missing. Within a Bayesian framework, we employed state-space models to estimate population rate of change ( λ ) using 15 years (2005–2019) of count surveys of male sage-grouse at traditional breeding grounds (i.e., leks) as a function of horse abundance relative to AML max and other environmental covariates (e.g., wildfire, precipitation, % sagebrush cover). Additionally, we employed a post hoc impact-control design to validate existing AML max values as related to sage-grouse population responses, and to help control for environmental stochasticity and broad-scale oscillations in sage-grouse abundance. On average, for every 50% increase in horse abundance over AML max , our model predicted an annual decline in sage-grouse abundance by 2.6%. Horse abundance at or below AML max coincided with sage-grouse λ estimates that were consistent with trends at non-horse areas elsewhere in the study region. Thus, AML max , as a whole, appeared to be set adequately in preventing adverse effects to sage-grouse populations. Results indicated 76%, 97%, and >99% probability of sage-grouse population decline relative to controls when horse numbers are 2, 2.5, and ≥3 times over AML max , respectively. As of 2019, horse herds exceeded AML max in Nevada, USA, by >4 times on average across all horse management areas. If feral horse populations continue to grow at current rates unabated, model projections indicate sage-grouse populations will be reduced within horse-occupied areas by >70.0% by 2034 (15-year projection), on average compared to 21.2% estimated for control sites. A monitoring framework that improves on estimating horse abundance and identifying responses of sage-grouse and other key indicator species (plant and animal) would be beneficial to guide management decisions that promote co-occurrence of horses with sensitive wildlife and livestock within landscapes subjected to multiple uses. Published 2021. This article is a U.S. Government work and is in the public domain in the USA. The Journal of Wildlife Management published by Wiley Periodicals LLC on behalf of The Wildlife Society.

Nevada↗

Guidelines for the field evaluation of desert tortoise health and disease

Field evaluation of free-ranging wildlife requires the systematic documentation of a variety of environmental conditions and individual parameters of health and disease, particularly in the case of rare or endangered species. In addition, defined criteria are needed for the humane salvage of ill or dying animals. The purpose of this paper is to describe, in detail, the preparation, procedures, and protocols we developed and tested for the field evaluation of wild desert tortoises ( Gopherus agassizii ). These guidelines describe: preparations for the field, including developing familiarity with tortoise behavior and ecology, and preparation of standardized data sheets; journal notes to document background data on weather conditions, temperature, rainfall, locality, and historic and recent human activities; procedures to prevent the spread of disease and parasites; data sheets for live tortoises to record tortoise identification, location, sex, body measurements and activity; health profile forms for documenting and grading physical abnormalities of tortoise posture and movements, general condition (e.g., lethargy, cachexia), external parasites, and clinical abnormalities associated with shell and upper respiratory diseases; permanent photographic records for the retrospective analysis of progression and regression of upper respiratory and eye diseases, analysis of shell lesions and evaluation of growth and age; and indications and methods for salvaging ill or dying tortoises for necropsy evaluation. These guidelines, tested on 5,000 to 20,000 tortoises over a 10 to 27 yr period, were designed to maximize acquisition of data for demographic, ecological, health and disease research projects; to reduce handling and stress of individual animals; to avoid spread of infectious disease; to promote high quality and consistent data sets; and to reduce the duration and number of field trips. The field methods are adapted for desert tortoise life cycle, behavior, anatomy, physiology, and pertinent disease; however the model is applicable to other species of reptiles. Comprehensive databases of clinical signs of disease and health are crucial to research endeavors and essential to decisions on captive release, epidemiology of disease, translocation of wild tortoises, breeding programs, and euthanasia.

Journal of Wildlife Diseases↗

A U.S.-China EcoPartnership study of disturbed wetland vegetation in West Dongting Lake, China

West Dongting Lake in China is important for human livelihoods and habitat of migratory waterfowl and other wildlife. The waterway re-engineering and agriculture intensification have contributed to changes in hydrology, sediment, and vegetation on the floodplain. This paper describes an EcoPartnership program conducted by the U.S. Geological Survey, Wetland and Aquatic Research Center, and Beijing Forestry University. It focused on the development of a wetland ecosystem network in West Dongting Lake with technical support from the U.S. partner using a number of related studies to examine wetland vegetation dynamics from upstream to downstream along the tributaries. The results of U.S. studies showed that the regeneration potential of species might be altered by changes in climate and local environment, and seed bank depletion by germination may be a major conservation threat in a future with recurring droughts in swamps of the southeastern United States. In the monsoonal wetlands of West Dongting Lake, the soil seed bank could be used as a seed source for revegetation after hydrologic restoration with the introduction of certain foundational species and the removal of poplar plantations. Also, West Dongting Lake is at high ecological risk of mercury pollution. Wetland ecosystem monitoring may allow managers to use the information to predict effects of climate change, water level and flow changes on sedimentation, and to manage for desired vegetation to support waterfowl and ecosystem services. The cooperation of two countries through the EcoPartnership program is now well established and poised for extensive research projects in the future.

West Dongting Lake↗

The ecology of chronic wasting disease in wildlife

Prions are misfolded infectious proteins responsible for a group of fatal neurodegenerative diseases termed transmissible spongiform encephalopathy or prion diseases. Chronic Wasting Disease (CWD) is the prion disease with the highest spillover potential, affecting at least seven Cervidae (deer) species. The zoonotic potential of CWD is inconclusive and cannot be ruled out. A risk of infection for other domestic and wildlife species is also plausible. Here, we review the current status of the knowledge with respect to CWD ecology in wildlife. Our current understanding of the geographic distribution of CWD lacks spatial and temporal detail, does not consider the biogeography of infectious diseases, and is largely biased by sampling based on hunters' cooperation and funding available for each region. Limitations of the methods used for data collection suggest that the extent and prevalence of CWD in wildlife is underestimated. If the zoonotic potential of CWD is confirmed in the short term, as suggested by recent results obtained in experimental animal models, there will be limited accurate epidemiological data to inform public health. Research gaps in CWD prion ecology include the need to identify specific biological characteristics of potential CWD reservoir species that better explain susceptibility to spillover, landscape and climate configurations that are suitable for CWD transmission, and the magnitude of sampling bias in our current understanding of CWD distribution and risk. Addressing these research gaps will help anticipate novel areas and species where CWD spillover is expected, which will inform control strategies. From an ecological perspective, control strategies could include assessing restoration of natural predators of CWD reservoirs, ultrasensitive CWD detection in biotic and abiotic reservoirs, and deer density and landscape modification to reduce CWD spread and prevalence.

Biological Reviews↗

Time-varying predatory behavior is primary predictor of fine-scale movement of wildland-urban cougars

Background While many species have suffered from the detrimental impacts of increasing human population growth, some species, such as cougars ( Puma concolor ), have been observed using human-modified landscapes. However, human-modified habitat can be a source of both increased risk and increased food availability, particularly for large carnivores. Assessing preferential use of the landscape is important for managing wildlife and can be particularly useful in transitional habitats, such as at the wildland-urban interface. Preferential use is often evaluated using resource selection functions (RSFs), which are focused on quantifying habitat preference using either a temporally static framework or researcher-defined temporal delineations. Many applications of RSFs do not incorporate time-varying landscape availability or temporally-varying behavior, which may mask conflict and avoidance behavior. Methods Contemporary approaches to incorporate landscape availability into the assessment of habitat selection include spatio-temporal point process models, step selection functions, and continuous-time Markov chain (CTMC) models; in contrast with the other methods, the CTMC model allows for explicit inference on animal movement in continuous-time. We used a hierarchical version of the CTMC framework to model speed and directionality of fine-scale movement by a population of cougars inhabiting the Front Range of Colorado, U.S.A., an area exhibiting rapid population growth and increased recreational use, as a function of individual variation and time-varying responses to landscape covariates. Results We found evidence for individual- and daily temporal-variability in cougar response to landscape characteristics. Distance to nearest kill site emerged as the most important driver of movement at a population-level. We also detected seasonal differences in average response to elevation, heat loading, and distance to roads. Motility was also a function of amount of development, with cougars moving faster in developed areas than in undeveloped areas. Conclusions The time-varying framework allowed us to detect temporal variability that would be masked in a generalized linear model, and improved the within-sample predictive ability of the model. The high degree of individual variation suggests that, if agencies want to minimize human-wildlife conflict management options should be varied and flexible. However, due to the effect of recursive behavior on cougar movement, likely related to the location and timing of potential kill-sites, kill-site identification tools may be useful for identifying areas of potential conflict.

Colorado↗

Nearshore single-beam bathymetry data collected in 2015, Dauphin Island, Alabama

Dauphin Island, Alabama, is a barrier island located in the northern Gulf of Mexico that supports local residences, tourism, commercial infrastructure, and historic Fort Gaines. During the past decade, Dauphin Island was affected by several major hurricanes—Hurricanes Ivan (2004), Katrina (2005), and Isaac (2012)—and storms, along with sea-level rise, continue to present a threat to island stability. State and Federal managers are using a scientific approach to identify, formulate, and implement a long-term plan to provide restoration options for Dauphin Island, thereby helping increase its resilience against future storms and sea-level rise. Island morphology, including current bathymetry and shoreline data, is one scientific domain being investigated in an effort to produce a comprehensive restoration plan funded by an interagency grant from the National Fish and Wildlife Foundation Gulf Environmental Benefit Fund . In August 2015, the U.S. Geological Survey ( USGS ) St. Petersburg Coastal and Marine Science Center ( SPCMSC ), in cooperation with the U.S. Army Corps of Engineers at the U.S. Army Engineer Research and Development Center, Mobile District, and the State of Alabama, conducted bathymetric surveys of the nearshore waters surrounding Dauphin Island. This report provides a detailed methodology for the data acquisition and post-processing of 1,165-line kilometers (km) of single-beam bathymetry data collected under the USGS–SPCMSC Alabama Barrier Island Restoration Study . These data were acquired and processed under USGS field activity number 2015–326–FA . Data are provided in three datums: (1) the International Terrestrial Reference Frame of 2000, ellipsoid height (from –47.04 meters (m) to –29.36 m); (2) the North American Datum of 1983, CORS96 realization (NAD83 (CORS96)) horizontal, and the North American Vertical Datum 1988 GEOID12A vertical (from –0.24 m to –17.33 m); and (3) NAD83 (CORS96) horizontal, and mean lower low water vertical (from –0.12 m to –17.93 m). The x,y,z point datasets, trackline shapefiles, digital and handwritten Field Activity Collection Systems logs, one 50-m digital elevation model, and formal Federal Geographic Data Committee metadata are obtainable from the Data Downloads page or the associated USGS data release .

Alabama↗

Fort Collins Science Center - Fiscal Year 2008 Science Accomplishments

Public land and natural resource managers in the United States are confronted with increasingly complex decisions that have important ramifications for both ecological and human systems. The scientists and technical professionals at the U.S. Geological Survey (USGS) Fort Collins Science Center (FORT) contribute a unique blend of ecological, socioeconomic, and technological expertise to investigating complicated ecological problems that address critical management questions. In Fiscal Year 2008 (FY08), FORT's scientific and technical professionals continued research vital to the science and management needs of U.S. Department of the Interior agencies and other entities. This annual report describes select FY08 accomplishments in research and technical assistance involving biological information management and delivery; aquatic, riparian, and managed-river ecosystems; invasive species; status and trends of biological resources (including human dimensions and social science); terrestrial ecosystems; and fish and wildlife resources.

Open-File Report↗

Population viability analysis for endangered Roanoke logperch

A common strategy for recovering endangered species is ensuring that populations exceed the minimum viable population size (MVP), a demographic benchmark that theoretically ensures low long-term extinction risk. One method of establishing MVP is population viability analysis, a modeling technique that simulates population trajectories and forecasts extinction risk based on a series of biological, environmental, and management assumptions. Such models also help identify key uncertainties that have a large influence on extinction risk. We used stochastic count-based simulation models to explore extinction risk, MVP, and the possible benefits of alternative management strategies in populations of Roanoke logperch Percina rex , an endangered stream fish. Estimates of extinction risk were sensitive to the assumed population growth rate and model type, carrying capacity, and catastrophe regime (frequency and severity of anthropogenic fish kills), whereas demographic augmentation did little to reduce extinction risk. Under density-dependent growth, the estimated MVP for Roanoke logperch ranged from 200 to 4200 individuals, depending on the assumed severity of catastrophes. Thus, depending on the MVP threshold, anywhere from two to all five of the logperch populations we assessed were projected to be viable. Despite this uncertainty, these results help identify populations with the greatest relative extinction risk, as well as management strategies that might reduce this risk the most, such as increasing carrying capacity and reducing fish kills. Better estimates of population growth parameters and catastrophe regimes would facilitate the refinement of MVP and extinction-risk estimates, and they should be a high priority for future research on Roanoke logperch and other imperiled stream-fish species.

Journal of Fish and Wildlife Management↗

Spatial and temporal patterns of avian paramyxovirus-1 outbreaks in Double-Crested Cormorants ( Phalacrocorax auritus ) in the USA

Morbidity and mortality events caused by avian paramyxovirus-1 (APMV-1) in Double-crested Cormorant (DCCO; Phalacrocorax auritus ) nesting colonies in the US and Canada have been sporadically documented in the literature. We describe APMV-1 associated outbreaks in DCCO in the US from the first reported occurrence in 1992 through 2012. The frequency of APMV-1 outbreaks has increased in the US over the last decade, but the majority of events have continued to occur in DCCO colonies in the Midwestern states. Although morbidity and mortality in conesting species has been frequently reported during DCCO APMV-1 outbreaks, our results suggest that isolation of APMV-1 is uncommon in species other than DCCO during APMV-1 outbreaks and that the cause of mortality in other species is associated with other pathogens. Populations of DCCO do not appear to have been significantly affected by this disease; however, because at least 65% of the APMV-1 outbreaks in DCCO in the US have involved APMV-1 strains classified as virulent to poultry (virulent Newcastle disease virus), its persistence and increased occurrence in DCCO warrants continued research and surveillance.

Journal of Wildlife Diseases↗

Can reliable sage-grouse lek counts be obtained using aerial infrared technology

More effective methods for counting greater sage-grouse (Centrocercus urophasianus) are needed to better assess population trends through enumeration or location of new leks. We describe an aerial infrared technique for conducting sage-grouse lek counts and compare this method with conventional ground-based lek count methods. During the breeding period in 2010 and 2011, we surveyed leks from fixed-winged aircraft using cryogenically cooled mid-wave infrared cameras and surveyed the same leks on the same day from the ground following a standard lek count protocol. We did not detect significant differences in lek counts between surveying techniques. These findings suggest that using a cryogenically cooled mid-wave infrared camera from an aerial platform to conduct lek surveys is an effective alternative technique to conventional ground-based methods, but further research is needed. We discuss multiple advantages to aerial infrared surveys, including counting in remote areas, representing greater spatial variation, and increasing the number of counted leks per season. Aerial infrared lek counts may be a valuable wildlife management tool that releases time and resources for other conservation efforts. Opportunities exist for wildlife professionals to refine and apply aerial infrared techniques to wildlife monitoring programs because of the increasing reliability and affordability of this technology.

Nevada;Wyoming↗

An introduction to the Woodworth Study Area

The Woodworth Study Area (WSA) was purchased by the U.S. Fish and Wildlife Service (FWS) during the early 1960's as a waterfowl production area. Unlike most such areas, its primary purpose was not to provide waterfowl breeding habitat directly, but instead it was dedicated for use as a research area to develop information for better management of upland and wetland habitats. This article provides some history of the area and background information about biological monitoring and research that have been conducted on the WSA. Unless otherwise stated, information included in derived from (1) or unpublished data on file at the Northern Prairie Science Center (NPSC).

North Dakota↗

Improve wildlife species tracking—Implementing an enhanced global positioning system data management system for California condors

U.S. Fish and Wildlife Service (USFWS) staff in the Pacific Southwest Region and at the Hopper Mountain National Wildlife Refuge Complex requested technical assistance to improve their global positioning system (GPS) data acquisition, management, and archive in support of the California Condor Recovery Program. The USFWS deployed and maintained GPS units on individual Gymnogyps californianus (California condor) in support of long-term research and daily operational monitoring and management of California condors. The U.S. Geological Survey (USGS) obtained funding through the Science Support Program to provide coordination among project participants, provide GPS Global System for Mobile Communication (GSM) transmitters for testing, and compare GSM/GPS with existing Argos satellite GPS technology. The USFWS staff worked with private companies to design, develop, and fit condors with GSM/GPS transmitters. The Movebank organization, an online database of animal tracking data, coordinated with each of these companies to automatically stream their GPS data into Movebank servers and coordinated with USFWS to improve Movebank software for managing transmitter data, including proofing/error checking of incoming GPS data. The USGS arranged to pull raw GPS data from Movebank into the USGS California Condor Management and Analysis Portal (CCMAP) ( https://my.usgs.gov/ccmap ) for production and dissemination of a daily map of condor movements including various automated alerts. Further, the USGS developed an automatic archiving system for pulling raw and proofed Movebank data into USGS ScienceBase to comply with the Federal Information Security Management Act of 2002. This improved data management system requires minimal manual intervention resulting in more efficient data flow from GPS data capture to archive status. As a result of the project’s success, Pinnacles National Park and the Ventana Wildlife Society California condor programs became partners and adopted the same workflow, tracking, and data archive system. This GPS tracking data management model and workflow should be applicable and beneficial to other wildlife tracking programs.

California↗

A synthesis of thresholds for focal species along the U.S. Atlantic and Gulf Coasts: A review of research and applications

The impacts from climate change are increasing the possibility of vulnerable coastal species and habitats crossing critical thresholds that could spur rapid and possibly irreversible changes. For species of high conservation concern, improved knowledge of quantitative thresholds could greatly improve management. To meet this need, we synthesized information pertaining to biological responses as tipping points to sea level rise (SLR) and coastal storms for 45 fish, wildlife, and plant species along the U.S. Atlantic and Gulf Coasts and Caribbean through a literature review and expert elicitation. Although these species were selected based on their ecological, economic, and cultural importance, just over half (56%, n = 25) have quantitative threshold data currently available that can be used to assess the effects of SLR and storms during some aspect of their life history. Birds, reptiles, and plants represent the best studied coastal species. Thirteen of the species (29%) are projected to lose at least 50% of their population or habitat (e.g., foraging, nesting, spawning, or resting habitat) in some areas with a 0.5 m or greater rise in sea levels by 2100. Two species (a bird and reptile) may gain habitat from projected SLR and be resilient to future impacts. Numeric thresholds were not available for the remaining 20 species we searched for. Coastal fishes, mammals, and amphibians were among the groups representing a major information gap in this field of research. In addition, quantitative threshold responses to coastal storms were scarce for all taxa. While vulnerability assessments and qualitative research related to the impacts of SLR and storms on coastal species and habitats are increasing, work that incorporates quantitative thresholds as response and impact metrics remains limited. Additional monitoring, modeling, and research that provides multiple quantitative thresholds across species' life stages and/or latitudinal gradients is ideal to support robust coastal management and decision-making across spatio-temporal scales in the face of climate change.

Ocean and Coastal Management↗