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Evaluation of Caspian tern ( Hydroprogne caspia ) and snowy plover ( Charadrius alexandrinus nivosus ) nesting on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—2016 Annual Report

Executive Summary In order to address the 2008/10 and Supplemental 2014 NOAA Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and have begun implementation of Caspian tern ( Hydroprogne caspia ) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans include (1) reducing nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creating or modifying nesting habitat at alternative sites within the Caspian tern breeding range. USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, to reduce or eliminate potential conflicts between nesting Caspian terns and threatened western snowy plovers ( Charadrius alexandrinus nivosus), nesting habitat for snowy plovers also was developed. Seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project. We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys between March and September of 2015 and 2016 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social attraction measures were successful in establishing Caspian tern breeding colonies at Ponds A16 and SF2 of DENWR. The success of 2015 continued in 2016, the second year of the study. In 2016, Caspian terns nested on two of the five islands modified for Caspian terns (one island in Pond A16 and one island in Pond SF2). Caspian terns initiated at least 317 nests, fledged at least 158 chicks, and had a breeding success rate of 0.50 fledged chicks per breeding pair. This represents a 42 percent increase in nests initiated, a 9 percent decrease in the number of fledged chicks, and a 36 percent decrease in the number of chicks fledged per breeding pair in 2016 compared to 2015. Although overall productivity decreased from 2015, these results indicate that the Caspian tern breeding population on modified islands of the DENWR is increasing relative to 2015, the first year of the effort, and relative to years prior to 2015 when no breeding colonies of Caspian terns existed in Ponds A16 or SF2. These results indicate the effectiveness of social attraction measures in helping to establish tern nesting colonies in San Francisco Bay. Conversely, for the second year in a row, snowy plovers did not attempt to nest on any island in Ponds A16 and SF2. Social attraction measures similar to those used in this study, but targeting other colonial species such as Forster’s terns ( Sterna forsteri ) and American avocets ( Recurvirostra americana ), may help to establish waterbird breeding colonies at wetlands enhanced as part of the SBSP Restoration Project.

California↗

Seasonal Variability and Effects of Stormflow on Concentrations of Pesticides and their Degradates in Kisco River and Middle Branch Croton River Surface Water, Croton Reservoir System, New York, May 2000-February 2001

Seven herbicides (2,4-D, 2,4-D methyl ester, bromacil, dicamba, diuron, imazaquin, and sulfometuron), four insecticides (carbaryl, diazinon, imidacloprid, and malathion), two fungicides (metalaxyl and myclobutanil), and caffeine (an indicator of wastewater) were detected in at least one sample from the Kisco River at concentrations above 0.1 ug/L (micrograms per liter). Four of these compounds - 2,4-D, 2,4-D methyl ester, dicamba, and metalaxyl - were detected in at least one sample from the Kisco River at a concentration above 1 ug/L. Only three herbicides (2,4-D, imazethapyr, and prometon) and caffeine were detected at concentrations above 0.1 ug/L in one or more of the Middle Branch Croton River samples, and no compounds were detected above 0.4 ug/L in Middle Branch Croton River samples. No samples contained concentrations of pesticides that exceeded human health-based water-quality standards. However, samples from the Kisco River contained four insecticides (carbaryl, chlorpyrifos, diazinon, and malathion) and one herbicide (2,4-D) in concentrations that exceeded water-quality criteria for the protection of aquatic life. Aquatic-life protection criteria were generally exceeded only in stormflow samples collected in June, September, and December 2000. No samples from the Middle Branch Croton River contained target compounds that exceeded water-quality criteria for the protection of aquatic life. Pesticide concentrations were generally higher, and the numbers of compounds generally larger in samples from the Kisco River than in samples from the Middle Branch Croton River, probably because the Kisco River watershed has a greater population density and is more extensively developed. The highest concentrations of most compounds in both streams were detected in stormflow samples collected in June, September, and December 2000. This indicates that stormflow sampling is essential in assessments of pesticide occurrence in streams that drain developed lands. The lowest concentrations of most compounds at both sites were detected in baseflow samples collected from October 2000 through February 2001, although the concentrations of several compounds increased substantially during stormflows at the Kisco River site in November and December, 2000.

Water-Resources Investigations Report↗

Floodwater drainage assessment of Offutt Air Force Base, Nebraska, 2020–22

Offutt Air Force Base, south of Omaha, Nebraska, experienced major flooding during the March 2019 flood event because of the proximity of the base to the confluence of the Missouri River and nearby tributaries, which exceeded flood stages. Postflood, standing water remained through much of the year, attracting waterfowl and other birds and posing a major safety risk to aircraft. The U.S. Geological Survey, in cooperation with the U.S. Air Force, began a study in 2020 to describe the hydrologic processes that affect the persistence of standing water on Offutt Air Force Base. Existing site data, reviewed in concert with groundwater and surface-water elevation data collected for the study, indicate varying hydrologic responses between two areas of concern (AOCs), which can be linked to differences in subsurface geology and changes in flows of the Missouri River. An inundation map indicated that standing water would be present throughout Papillion Creek Ditch in AOC 1 and would extend upstream to AOC 2 during flow events greater than 771 cubic feet per second. A U.S. Army Corps of Engineers Hydrologic Engineering Center-River Analysis System model and a flow-duration analysis were used to infer that many of the surface-water drainage problems experienced in 2019 were the result of backwater conditions caused by higher streamflows in the Missouri River.

Nebraska↗

Hydrographic surveys of four narrows within the Namakan reservoir system, Voyageurs National Park, Minnesota, 2011

The U.S. Geological Survey performed multibeam echosounder hydrographic surveys of four narrows in the Namakan reservoir system in August 2011, in cooperation with the International Joint Commission and Environment Canada. The data-collection effort was completed to provide updated and detailed hydrographic data to Environment Canada for inclusion in a Hydrologic Engineering Centers River Analysis System hydraulic model. The Namakan reservoir system is composed of Namakan, Kabetogama, Sand Point, Crane, and Little Vermilion Lakes. Water elevations in the Namakan reservoir system are regulated according to rule curves, or guidelines for water-level management based on the time of year, established by the International Joint Commission. Water levels are monitored by established gages on Crane Lake and the outlet of Namakan Lake at Kettle Falls, but water elevations throughout the system may deviate from these measured values by as much as 0.3 meters, according to lake managers and residents. Deviations from expected water elevations may be caused by between-lake constrictions (narrows). According to the 2000 Rule Curve Assessment Workgroup, hydrologic models of the reservoir system are needed to better understand the system and to evaluate the recent changes made to rule curves in 2000. Hydrographic surveys were performed using a RESON SeaBat™7125 multibeam echosounder system. Surveys were completed at Namakan Narrows, Harrison Narrows, King Williams Narrows, and Little Vermilion Narrows. Hydrographic survey data were processed using Caris HIPS TM and SIPS TM software that interpolated a combined uncertainty and bathymetric estimator (CUBE) surface. Quality of the survey results was evaluated in relation to standards set by the International Hydrographic Organization (IHO) for describing the uncertainty of hydrographic surveys. More than 90 percent of the surveyed areas at the four narrows have resulting bed elevations that meet the IHO “Special Order” quality. Survey datasets published in this report are formatted as text files of x-y-z coordinates and as CARIS Spatial Archive TM (CSAR TM ) files with corresponding metadata.

Minnesota↗

The evaluation of selected one-dimensional stream water quality models with field data

The U.S. Geological Survey One-Dimensional Stream Water-Quality Model, QUAL II Stream Water-Quality Routing Model, the U.S. Army corps of Engineers Water Quality for River Reservoir Systems Model, and the M.I.T. Transient Water Quality Network were evaluated and compared using actual water-quality data collected by the U.S. Geological Survey. The field data were taken from steady-state studies of the Chattahoochee River in Georgia, the Willamette River in Oregon, and the Arkansas River in Colorado. The data used to evaluate the models covered a wide range of physical, chemical, and biological conditions. The Willamette River is a large sluggish stream, whereas the Arkansas River is a small dynamic stream. The Chattahoochee River is of moderate size. Each stream has unique water-quality characteristics that test a wide range of model options. (USGS)

Open-File Report↗

Hydrology, geomorphology, and flood profiles of the Mendenhall River, Juneau, Alaska

Water-surface-profile elevations for the 2-, 20-, 25-, 50-, and 100-year floods were computed for the Mendenhall River near Juneau, Alaska, using the U.S. Army Corps of Engineers Hydrologic Engineering Center River Analysis System model. The peak discharges for the selected recurrence intervals were determined using the standard log-Pearson type III method. Channel cross sections were surveyed at 60 locations to define hydraulic characteristics over a 5.5-mile reach of river beginning at Mendenhall Lake outlet and extending to the river mouth. A peak flow of 12,400 cubic feet per second occurred on the Mendenhall River on October 20, 1998. This discharge is equivalent to about a 10-year flood on the Mendenhall River and floodmarks produced by this flood were surveyed and used to calibrate the model. The study area is currently experiencing land-surface uplift rates of about 0.05 foot per year. This high rate of uplift has the potential to cause incision or downcutting of the river channel through lowering of the base level. Vertical datum used in the study area was established about 37 years before the most recent surveys of river-channel geometry. The resulting difference between land-surface elevations and sea level continues to increase. Continuing incision of the river channel combined with increased land-surface elevations with respect to sea level may result in computed flood profiles that are higher than actual existing conditions in the tidally influenced reach of the river.

Alaska↗

Crims Island-Restoration and monitoring of juvenile salmon rearing habitat in the Columbia River Estuary, Oregon, 2004-10

Under the 2004 Biological Opinion for operation of the Federal Columbia River Power System released by the National Marine Fisheries Service, the U.S. Army Corps of Engineers (USACE), the Bonneville Power Administration (BPA), and the Bureau of Reclamation (Reclamation) were directed to restore more than 4,047 hectares (10,000 acres) of tidal marsh in the Columbia River estuary by 2010. Restoration of Crims Island near Longview, Washington, restored 38.1 hectares of marsh and swamp in the tidal freshwater portion of the lower Columbia River. The goal of the restoration was to improve habitat for juveniles of Endangered Species Act (ESA)-listed salmon stocks and ESA-listed Columbian white-tailed deer. The U.S. Geological Survey (USGS) monitored and evaluated the fisheries and aquatic resources at Crims Island in 2004 prior to restoration (pre-restoration), which began in August 2004, and then post-restoration from 2006 to 2009. This report summarizes pre- and post-restoration monitoring data used by the USGS to evaluate project success. We evaluated project success by examining the interaction between juvenile salmon and a suite of broader ecological measures including sediments, plants, and invertebrates and their response to large-scale habitat alteration. The restoration action at Crims Island from August 2004 to September 2005 was to excavate a 0.6-meter layer of soil and dig channels in the interior of the island to remove reed canary grass and increase habitat area and tidal exchange. The excavation created 34.4 hectares of tidal emergent marsh where none previously existed and 3.7 hectares of intertidal and subtidal channels. Cattle that had grazed the island for more than 50 years were relocated. Soil excavated from the site was deposited in upland areas next to the tidal marsh to establish an upland forest. Excavation deepened and widened an existing T-shaped channel to increase tidal flow to the interior of the island. The western arm of the existing 'T-channel' was extended westward and connected to Bradbury Slough to create a second outlet to the main river. New intertidal channels were constructed from the existing 'T-channel' and tidal mudflats became inundated at high tide to increase rearing habitat for juvenile salmonids. The restoration action resulted in a 95-percent increase in available juvenile salmon rearing habitat. We collected juvenile salmon and other fishes at Crims Island and a nearby reference site using beach seines and fyke nets annually from March through August during all years. Benthic invertebrates were collected with sediment corers and drift invertebrates were collected with neuston nets. Juvenile salmon stomach contents were sampled using lavage. Vegetation and sediments characteristics were surveyed and we conducted a topographic/bathymetric survey using a RTK (real time kinematic) GPS (global positioning system). The fish assemblage at Crims Island, composed primarily of threespine stickleback (Gasterosteus aculeatus), non-native banded killifish (Fundulus diaphanus), peamouth chub (Mylocheilus caurinus), subyearling Chinook salmon (Oncorhynchus tshawytscha) (hereinafter referred to as subyearlings), and small numbers of juvenile chum salmon (Oncorhynchus keta), did not differ appreciably pre- and post-restoration. Subyearlings were the primary salmonid collected and were seasonally abundant from April through May during all years. The abundance of juvenile salmon declined seasonally as water temperature exceeded 20 degrees C in the Reference site by mid-June; however, subyearlings persisted at the Mainstem site and in subtidal channels of the Restoration site through the summer in water temperatures exceeding 22 degrees C. Residence times of subyearlings in Crims Island backwaters generally were short consisting of one or two tidal cycles. Median residence time was longer in the Restoration site than in the Reference site pre- and post-restoration. Small (mean = 55.7 millimeters) subyea

Scientific Investigations Report↗

Effects of dam-induced delays on system-wide survival of Atlantic salmon smolts during high-flow, high-survival years in the Penobscot River, Maine, USA

System-wide survival of hatchery-reared Atlantic salmon ( Salmo salar ) smolts was evaluated (2017–2019) in the Penobscot River and compared to survival estimates from previous years that spanned major changes (2005–2016). This system was transformed through two dam removals in 2012 and construction of a nature-like passage structure at a third. The main stem had three dams (five prior to 2012), while the main tributary had four dams (one with the new nature-like passage). We estimated survival using acoustic telemetry mark–recapture ( n = 1482) from 2017 to 2019. Six release sites and two release dates were included to assess system-wide survival. Survival from 2017 to 2019 was higher than previous years, with total cumulative survival > 0.75, independently of year and release sites, compared to survival < 0.5 in previous years. These years coincided with exceptional high flows not seen previously. We found an effect of delays on survival, longer delays associated with lower survival. Overall, survival in these years increased in all reaches relative to previous years except for one dam, Weldon Dam, which was a site of sustained high mortality.

Maine↗

Forest canopy gap dynamics: Quantifying forest gaps and understanding gap – level forest regeneration in Upper Mississippi River floodplain forests

In most forest systems, the dynamics of forest canopy gap development play an important role in the transition from relatively short-lived early successional tree species to longer-lived, late successional tree species. In resilient forest systems, tree seedlings establish within newly created canopy gaps and grow to close the gap within one or two decades of disturbance. However, evidence in portions of the Upper Mississippi River System indicates that floodplain forests do not appear to be following these same trajectories, with canopy gaps instead seeming to fail to recruit new tree seedlings and reverting to non-forested cover types. Because of the heavy dominance of short-lived tree species in current UMRS forests, there is concern that continued failure of canopy gaps to recruit back to forest could be an early indicator of long-term, widespread forest loss as gaps become larger and larger and begin to coalesce into large, non-forested areas. Little research to date has documented either the density and distribution of forest canopy gaps across the UMRS or the vegetative conditions within those gaps to provide an initial assessment of forest dynamics in those areas. The current study utilizes both remotely sensed data and field sampling to assess the conditions of forest canopy gaps within 6 navigation pools on the Upper Mississippi River and one pool on the Illinois River. In general, canopy gap distributions and characteristics are similar across the study, with most pools ranging from 3% to 5% of forest canopy in gaps. Gap sizes are also relatively uniform, with most pools averaging 0.09 to 0.14 ha per gap. The highest proportion of forest cover in canopy gaps at the pool level was driven by the total number of gaps and not gap size, indicating that canopy gap formation in this system is commonly due to individual tree or small clump mortality. Undesirable competing vegetation was dominant in most canopy gaps, with reed canarygrass and native forbs being most prevalent in upper pools and vines most problematic in the lower pools. In the upper pools, very little viable forest regeneration is occurring within canopy gaps. The viability of forest regeneration increases in middle and lower pools, though competing vegetation continues to be a problem. Overall, canopy gaps appear 3 most likely to recruit back to forest in lower pools, and chronic forest loss facilitated by regeneration failures seems most likely in upper pools. However, competing vegetation in lower pools may still interact with woody regeneration to limit effective reestablishment of forest canopy.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

Water resources of the Pittsburgh area, Pennsylvania

The per capita use of water in the Pittsburgh area in 1951 was 2, 000 gallons per day fgpd) or twice the per capita use in Pennsylvania as a whole. An average of about 3, 040 million gallons of water was withdrawn from the streams and from the ground each day. Of this amount, nearly 190 million gallons per day (mgd), or 6 percent, was for domestic public water supply. Industry, including public utilities generating steam for electric energy, used approximately 2, 900 mgd, of which about 42 mgd was purchased from public supply sources. In spite of this tremendous demand for water, a sufficient quantity was available to satisfy the needs of the area without serious difficulty. Acid mine drainage presents the greatest single pollution problem in the Pittsburgh area at the present time (1953) because no practical means has been found for its control. The waters of several of the rivers are strongly acid for this reason. Of the three major rivers in the area, Monongahela River waters have the greatest acid concentration and Allegheny River waters the least. Untreated domestic and industrial wastes are additional sources of stream pollution in the area. Much of the water is hard and corrosive, and occasionally has objectionable color, odor, and taste. The treatment used by public water-supply systems using river water is adequate at all times for removal of water-borne causes of disease. Attention is being concentrated on improving the quality of present supplies rather than developing new supplies from upstream tributaries. Present supplies are being improved by providing treatment facilities for disposal of wastes,, by reduction of acid mine drainage discharged into the streams, and by providing storage to augment low flows. The underground water resources are vitally important to the area. The use of ground water in the Pittsburgh area has doubled in the past two decades and in 1951 more ground water was used in Allegheny County than in any other county in Pennsylvania. On the average about 63 mgd was pumped from the ground, not including 1.5 mgd pumped for air conditioning. Most of the present-day wells in the "Triangle area" of Pittsburgh have large yields and many operate continuously throughout the summer. The result has been a marked seasonal decline in water levels in some parts of the Triangle area, especially near the center of pumping. It appears that the maximum rate of summertime use has been reached in this localized area. Water from wells near rivers often has chemical characteristics similar to those of water from the adjacent stream because the well water is supplied largely by river infiltration. The ground water in the Pittsburgh area is generally more highly mineralized than surface water, harder, and contains higher concentrations of iron and manganese, all the result of solution of aquifer minerals by the water during its passage through the ground. Nevertheless, ground water commonly is less corrosive than surface water, contains little or no suspended sediment, and is free of pathogenic bacteria. Both sediment and bacteria are present in considerable quantities in the river water of this area. Water from wells supplied largely by river infiltration may have a temperature variation throughout a year of as much as 30 to 35 F and a variation in hardness of as much as 130 ppm. Certain types of chemicals having objectionable tastes and odors are not always removed by the natural infiltration of the river water to wells but pathogenic bacteria and sediment are. There is only a small range throughout a year in the temperature and chemical quality of water in individual wells farther from the rivers. Such water is generally harder and contains more dissolved solids than water supplied by river infiltration. There is no immediate likelihood of a shortage of water in the area. Present withdrawals of surface water are spread throughout the major river valleys so that the water returned to the stream after use is available for reuse in essentially undiminished quantity. Ground-water use can be increased manyfold without depleting the supply if advantage is taken of the favorable opportunities for inducing the infiltration of surface water into the alluvial aquifers in the major stream valleys. Ground-water recharge supplied by the rivers will reduce the local flow of the rivers by the amount of the infiltration; however most of the ground water used is discharged to streams near the areas of withdrawal.

Circular↗

Hydrosalinity studies of the Virgin River, Dixie Hot Springs, and Littlefield Springs, Utah, Arizona, and Nevada

The Virgin River contributes a substantial amount of dissolved solids (salt) to the Colorado River at Lake Mead in the lower Colorado River Basin. Degradation of Colorado River water by the addition of dissolved solids from the Virgin River affects the suitability of the water for municipal, industrial, and agricultural use within the basin. Dixie Hot Springs in Utah are a major localized source of dissolved solids discharging to the Virgin River. The average measured discharge from Dixie Hot Springs during 2009–10 was 11.0 cubic feet per second (ft 3 /s), and the average dissolved-solids concentration was 9,220 milligrams per liter (mg/L). The average dissolved-solids load—a measurement that describes the mass of salt that is transported per unit of time—from Dixie Hot Springs during this period was 96,200 tons per year (ton/yr). Annual dissolved-solids loads were estimated at 13 monitoring sites in the Virgin River Basin from streamflow data and discrete measurements of dissolved-solids concentrations and (or) specific conductance. Eight of the sites had the data needed to estimate annual dissolved-solids loads for water years (WYs) 1999 through 2010. During 1999–2010, the smallest dissolved-solids loads in the Virgin River were upstream of Dixie Hot Springs (59,900 ton/yr, on average) and the largest loads were downstream of Littlefield Springs (298,200 ton/yr, on average). Annual dissolved-solids loads were smallest during 2002–03, which was a period of below normal precipitation. Annual dissolved-solids loads were largest during 2005—a year that included a winter rain storm that resulted in flooding throughout much of the Virgin River Basin. An average seepage loss of 26.7 ft 3 /s was calculated from analysis of monthly average streamflow from July 1998 to September 2010 in the Virgin River for the reach that extends from just upstream of the Utah/Arizona State line to just above the Virgin River Gorge Narrows. Seepage losses from three river reaches in the Virgin River Gorge containing known fault zones accounted for about 48 percent of this total seepage loss. An additional seepage loss of 6.7 ft 3 /s was calculated for the reach of the Virgin River between Bloomington, Utah, and the Utah/Arizona State line. This loss in flow is small compared to total flow in the river and is comparable to the rated error in streamflow measurements in this reach; consequently, it should be used with caution. Littlefield Springs were studied to determine the fraction of its discharge that originates as upstream seepage from the Virgin River and residence time of this water in the subsurface. Geochemical and environmental tracer data from groundwater and surface-water sites in the Virgin River Gorge area suggest that discharge from Littlefield Springs is a mixture of modern (post-1950s) seepage from the Virgin River upstream of the springs and older groundwater from a regional carbonate aquifer. Concentrations of the chlorofluorocarbons (CFCs) CFC-12 and CFC-113, chloride/fluoride and chloride/bromide ratios, and the stable isotope deuterium indicate that water discharging from Littlefield Springs is about 60 percent seepage from the Virgin River and about 40 percent discharge from the regional carbonate aquifer. The river seepage component was determined to have an average subsurface traveltime of about 26 ±1.6 years before discharging at Littlefield Springs. Radiocarbon data for Littlefield Springs suggest groundwater ages from 1,000 to 9,000 years. Because these are mixed waters, the component of discharge from the carbonate aquifer is likely much older than the groundwater ages suggested by the Littlefield Springs samples. If the dissolved-solids load from Dixie Hot Springs to the Virgin River were reduced, the irrigation water subsequently applied to agricultural fields in the St. George and Washington areas, which originates as water from the Virgin River downstream of Dixie Hot Springs, would have a lower dissolved-solids concentration. Dissolved-solids concentrations in excess irrigation water draining from the agricultural fields are about 1,700 mg/L higher than the concentrations in the Virgin River water that is currently (2014) used for irrigation that contains inflow from Dixie Hot Springs; this increase results from evaporative concentration and dissolution of mineral salts in the irrigated agricultural fields. The water samples collected from drains downgradient from the irrigated areas are assumed to include the dissolution of all available minerals precipitated in the soil during the previous irrigation season. Based on this assumption, a change to more dilute irrigation water will not dissolve additional minerals and increase the dissolved-solids load in the drain discharge. Following the hypothetical reduction of salts from Dixie Hot Springs, which would result in more dilute Virgin River irrigation water than is currently used, the dissolution of minerals left in the soil from the previous irrigation season would result in a net increase in dissolved-solids concentrations in the drain discharge, but this increase should only last one irrigation season. After one (or several) seasons of irrigating with more dilute irrigation water, mineral precipitation and subsequent re-dissolution beneath the agricultural fields should be greatly reduced, leading to a reduction in dissolved-solids load to the Virgin River below the agricultural drains. A mass-balance model was used to predict changes in the dissolved-solids load in the Virgin River if the salt discharging from Dixie Hot Springs were reduced or removed. Assuming that 33.4 or 26.7 ft 3 /s of water seeps from the Virgin River to the groundwater system upstream of the Virgin River Gorge Narrows, the immediate hypothetical reduction in dissolved-solids load in the Virgin River at Littlefield, Arizona is estimated to be 67,700 or 71,500 ton/yr, respectively. The decrease in dissolved-solids load in seepage from the Virgin River to the groundwater system is expected to reduce the load discharging from Littlefield Springs in approximately 26 years, the estimated time lag between seepage from the river and discharge of the seepage water, after subsurface transport, from Littlefield Springs. At that time, the entire reduction in dissolved solids seeping from the Virgin River is expected to be realized as a reduction in dissolved solids discharging from Littlefield Springs, resulting in an additional reduction of 24,700 ton/yr (based on 33.4 ft 3 /s of seepage loss) or 21,000 ton/yr (based on 26.7 ft 3 /s of seepage loss) in the river’s dissolved-solids load at Littlefield.

Arizona, Nevada, Utah↗

Flood hydrology and dam-breach hydraulic analyses of four reservoirs in the Black Hills, South Dakota

Extensive information about the construction of dams or potential downstream hazards in the event of a dam breach is not available for many small reservoirs within the Black Hills National Forest. In 2009, the U.S. Forest Service identified the need for reconnaissance-level dam-breach assessments for four of these reservoirs within the Black Hills National Forest (Iron Creek, Horsethief, Lakota, and Mitchell Lakes) with the potential to flood downstream structures. Flood hydrology and dam-breach hydraulic analyses for the four selected reservoirs were conducted by the U.S. Geological Survey in cooperation with the U.S. Forest service to estimate the areal extent of downstream inundation. Three high-flow breach scenarios were considered for cases when the dam is in place (overtopped) and when a dam break (failure) occurs: the 100-year recurrence 24-hour precipitation, 500-year recurrence peak flow, and the probable maximum precipitation. Inundation maps were developed that show the estimated extent of downstream floodwaters from simulated scenarios. Simulation results were used to determine the hazard classification of a dam break (high, significant, or low), based primarily on the potential for loss of life or property damage resulting from downstream inundation because of the flood surge. The inflow design floods resulting from the two simulated storm events (100-year 24-hour and probable maximum precipitation) were determined using the U.S. Army Corps of Engineers Hydrologic Engineering Center Hydrologic Modeling System (HEC-HMS). The inflow design flood for the 500-year recurrence peak flow was determined by using regional regression equations developed for streamflow-gaging stations with similar watershed characteristics. The step-backwater hydraulic analysis model, Hydrologic Engineering Center's River Analysis System (HEC-RAS), was used to determine water-surface profiles of in-place and dam-break scenarios for the three inflow design floods that were simulated. Inundation maps for in-place and dam-break scenarios were developed for the area downstream from the dam to the mouth of each stream. Dam-break scenarios for three of the four reservoirs assessed in this study were rated as low hazards owing to absence of permanent structures downstream from the dams. Iron Creek Lake's downstream channel to its mouth does not include any permanent structures within the inundation flood plains. For the two reservoirs with the largest watershed areas, Lakota and Mitchell Lake, the additional floodwater surge resulting from a dam break would be minor relative to the magnitude of the large flood streamflow into the reservoirs, based on the similar areal extent of inundation for the in-place and dam-break scenarios as indicated by the developed maps. A dam-break scenario at Horsethief Lake is rated as a significant hazard because of potential lives-in-jeopardy in downstream dwellings and appreciable economic loss.

South Dakota↗

Subsurface stratigraphic cross sections of cretaceous and lower tertiary rocks in the Wind River Basin, central Wyoming: Chapter 9 in Petroleum systems and geologic assessment of oil and gas resources in the Wind River Basin Province, Wyoming

The stratigraphic cross sections presented in this report were constructed as part of a project conducted by the U.S. Geological Survey to characterize and evaluate the undiscovered oil and gas resources of the Wind River Basin (WRB) in central Wyoming. The primary purpose of the cross sections is to show the stratigraphic framework and facies relations of Cretaceous and lower Tertiary rocks in this large, intermontane structural and sedimentary basin, which formed in the Rocky Mountain foreland during the Laramide orogeny (Late Cretaceous through early Eocene time). The WRB is nearly 200 miles (mi) long, 70 mi wide, and encompasses about 7,400 square miles (mi 2 ) (fig. 1). The basin is structurally bounded by the Owl Creek and Bighorn Mountains on the north, the Casper arch on the east, the Granite Mountains on the south, and the Wind River Range on the west.

Wyoming↗

Changes in aquatic vegetation and floodplain land cover in the Upper Mississippi and Illinois rivers (1989–2000–2010)

Quantifying changes in the cover of river-floodplain systems can provide important insights into the processes that structure these landscapes as well as the potential consequences to the ecosystem services they provide. We examined net changes in 13 different aquatic and floodplain land cover classes using photo interpreted maps of the navigable portions of the Upper Mississippi River (UMR, above the confluence with the Ohio River) and Illinois River from 1989 to 2000 and from 2000 to 2010. We detected net decreases in vegetated aquatic area in nearly all river reaches from 1989 to 2000. The only river reaches that experienced a subsequent recovery of vegetated aquatic area from 2000 to 2010 were located in the northern portion of the UMR (above navigation pool 14) and two reaches in the Illinois River. Changes on the floodplain were dominated by urban development, which increased in nearly every river reach studied from 1989 to 2000. Agricultural lands declined in most river reaches from 2000 to 2010. The loss of agricultural land cover in the northern UMR was accompanied by increases in forest cover, whereas in the lower UMR and Illinois River, declines in agriculture were accompanied by increases in forest and shallow marsh communities. The changes in aquatic vegetation occupied between 5 and 20% of the total aquatic area and are likely associated with previously reported regional improvements in water clarity, while smaller (1–15% of the total floodplain area) changes in anthropogenic land cover types on the floodplain are likely driven by broad-scale socio-economic conditions.

Illinois River, Upper Mississippi River↗

Hydrologic and hydraulic analyses of selected streams in Richland County, Ohio

Hydrologic and hydraulic analyses were done for selected reaches of Clear Fork Mohican River and Cedar Fork in Richland County, Ohio. To update and expand a portion of the Federal Emergency Management Agency detailed Flood Insurance Study, the U.S. Geological Survey (USGS) and the Muskingum Watershed Conservancy District initiated a cooperative study. The study comprised an 18.6-mile reach of the Clear Fork Mohican River and a 5.9-mile reach of Cedar Fork. Historical streamflow data from the streamgage Clear Fork Mohican River at Bellville, Ohio (USGS station number 03131982) and regional regression equations were used to estimate instantaneous peak streamflows for floods with 10-, 4-, 2-, 1-, and 0.2-percent and 1-percent plus annual exceedance probabilities. The 1-percent plus flood elevation is defined by the Federal Emergency Management Agency as a flood elevation derived by using streamflows that include the average predictive error for the regression equation streamflow calculation for the Flood Risk project. This error is then added to the 1-percent annual exceedance probability flood streamflow to calculate the new 1-percent plus streamflow. The annual exceedance probability streamflows were then used in a Hydrologic Engineering Center-River Analysis System step-backwater model to determine water-surface elevation profiles and flood-inundation boundaries for the 10-, 4-, 2-, 1-, and 0.2-percent and 1-percent plus annual exceedance probability floods and a regulatory floodway along a selected reach of each stream. The Clear Fork Mohican River model was calibrated to 16 flood events by using the current stage-streamflow relation at the streamgage Clear Fork Mohican River at Bellville, Ohio (USGS station number 03131982) and a submersible pressure transducer. Flood-inundation boundaries for the 1- and 0.2-percent annual exceedance probability floods and a regulatory floodway were mapped for each stream.

Ohio↗

Tidal wetlands of the Yaquina and Alsea River estuaries, Oregon: Geographic Information Systems layer development and recommendations for National Wetlands Inventory revisions

Geographic Information Systems (GIS) layers of current, and likely former, tidal wetlands in two Oregon estuaries were generated by enhancing the 2010 National Wetlands Inventory (NWI) data with expert local field knowledge, Light Detection and Ranging-derived elevations, and 2009 aerial orthophotographs. Data were generated for two purposes: First, to enhance the NWI by recommending revised Cowardin classifications for certain NWI wetlands within the study area; and second, to generate GIS data for the 1999 Yaquina and Alsea River Basins Estuarine Wetland Site Prioritization study. Two sets of GIS products were generated: (1) enhanced NWI shapefiles; and (2) shapefiles of prioritization sites. The enhanced NWI shapefiles contain recommended changes to the Cowardin classification (system, subsystem, class, and/or modifiers) for 286 NWI polygons in the Yaquina estuary (1,133 acres) and 83 NWI polygons in the Alsea estuary (322 acres). These enhanced NWI shapefiles also identify likely former tidal wetlands that are classified as upland in the current NWI (64 NWI polygons totaling 441 acres in the Yaquina estuary; 16 NWI polygons totaling 51 acres in the Alsea estuary). The former tidal wetlands were identified to assist strategic planning for tidal wetland restoration. Cowardin classifications for the former tidal wetlands were not provided, because their current hydrology is complex owing to dikes, tide gates, and drainage ditches. The scope of this project did not include the field evaluation that would be needed to determine whether the former tidal wetlands are currently wetlands, and if so, determine their correct Cowardin classification. The prioritization site shapefiles contain 49 prioritization sites totaling 2,177 acres in the Yaquina estuary, and 39 prioritization sites totaling 1,045 acres in the Alsea estuary. The prioritization sites include current and former (for example, diked) tidal wetlands, and provide landscape units appropriate for basin-scale wetland restoration and conservation action planning. Several new prioritization sites (not included in the 1999 prioritization) were identified in each estuary, consisting of NWI polygons formerly classified as nontidal wetland or upland. The GIS products of this project improve the accuracy and utility of the NWI data, and provide useful tools for estuarine resource management.

Oregon↗

Simulation of Water Levels and Salinity in the Rivers and Tidal Marshes in the Vicinity of the Savannah National Wildlife Refuge, Coastal South Carolina and Georgia

The Savannah Harbor is one of the busiest ports on the East Coast of the United States and is located downstream from the Savannah National Wildlife Refuge, which is one of the Nation?s largest freshwater tidal marshes. The Georgia Ports Authority and the U.S. Army Corps of Engineers funded hydrodynamic and ecological studies to evaluate the potential effects of a proposed deepening of Savannah Harbor as part of the Environmental Impact Statement. These studies included a three-dimensional (3D) model of the Savannah River estuary system, which was developed to simulate changes in water levels and salinity in the system in response to geometry changes as a result of the deepening of Savannah Harbor, and a marsh-succession model that predicts plant distribution in the tidal marshes in response to changes in the water-level and salinity conditions in the marsh. Beginning in May 2001, the U.S. Geological Survey entered into cooperative agreements with the Georgia Ports Authority to develop empirical models to simulate the water level and salinity of the rivers and tidal marshes in the vicinity of the Savannah National Wildlife Refuge and to link the 3D hydrodynamic river-estuary model and the marsh-succession model. For the development of these models, many different databases were created that describe the complexity and behaviors of the estuary. The U.S. Geological Survey has maintained a network of continuous streamflow, water-level, and specific-conductance (field measurement to compute salinity) river gages in the study area since the 1980s and a network of water-level and salinity marsh gages in the study area since 1999. The Georgia Ports Authority collected water-level and salinity data during summer 1997 and 1999 and collected continuous water-level and salinity data in the marsh and connecting tidal creeks from 1999 to 2002. Most of the databases comprise time series that differ by variable type, periods of record, measurement frequency, location, and reliability. Understanding freshwater inflows, tidal water levels, and specific conductance in the rivers and marshes is critical to enhancing the predictive capabilities of a successful marsh succession model. Data-mining techniques, including artificial neural network (ANN) models, were applied to address various needs of the ecology study and to integrate the riverine predictions from the 3D model to the marsh-succession model. ANN models were developed to simulate riverine water levels and specific conductance in the vicinity of the tidal marshes for the full range of historical conditions using data from the river gaging networks. ANN models were also developed to simulate the marsh water levels and pore-water salinities using data from the marsh gaging networks. Using the marsh ANN models, the continuous marsh network was hindcasted to be concurrent with the long-term riverine network. The hindcasted data allow ecologists to compute hydrologic parameters?such as hydroperiods and exposure frequency?to help analyze historical vegetation data. To integrate the 3D hydrodynamic model, the marsh-succession model, and various time-series databases, a decision support system (DSS) was developed to support the various needs of regulatory and scientific stakeholders. The DSS required the development of a spreadsheet application that integrates the database, 3D hydrodynamic model output, and ANN riverine and marsh models into a single package that is easy to use and can be readily disseminated. The DSS allows users to evaluate water-level and salinity response for different hydrologic conditions. Savannah River streamflows can be controlled by the user as constant flow, a percentage of historical flows, a percentile daily flow hydrograph, or as a user-specified hydrograph. The DSS can also use output from the 3D model at stream gages near the Savannah National Wildlife Refuge to simulate the effects in the tidal marshes. The DSS is distributed with a two-dimensional (

Georgia, South Carolina↗

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada↗