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USGS2008

Ground-water quality data in the Central Eastside San Joaquin Basin 2006: Results from the California GAMA program

Ground-water quality in the approximately 1,695-square-mile Central Eastside study unit (CESJO) was investigated from March through June 2006 as part of the Statewide Basin Assessment Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Statewide Basin Assessment project was developed in response to the Groundwater Quality Monitoring Act of 2001 and is being conducted by the California State Water Resources Control Board (SWRCB) in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory (LLNL). The study was designed to provide a spatially unbiased assessment of raw ground-water quality within CESJO, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 78 wells in Merced and Stanislaus Counties. Fifty-eight of the 78 wells were selected using a randomized grid-based method to provide statistical representation of the study unit (grid wells). Twenty of the wells were selected to evaluate changes in water chemistry along selected lateral or vertical ground-water flow paths in the aquifer (flow-path wells). The ground-water samples were analyzed for a large number of synthetic organic constituents [volatile organic compounds (VOCs), gasoline oxygenates and their degradates, pesticides and pesticide degradates], constituents of special interest [perchlorate, N-nitrosodimethylamine (NDMA), and 1,2,3-trichloropropane (1,2,3-TCP)], inorganic constituents that can occur naturally [nutrients, major and minor ions, and trace elements], radioactive constituents, and microbial indicators. Naturally occurring isotopes [tritium, carbon-14, and uranium isotopes and stable isotopes of hydrogen, oxygen, nitrogen, sulfur, and carbon], and dissolved noble and other gases also were measured to help identify the source and age of the sampled ground water. Quality-control samples (blanks, replicates, samples for matrix spikes) were collected for approximately one-sixth of the wells, and the results for these samples were used to evaluate the quality of the data for the ground-water samples. Assessment of the quality-control results showed that the environmental data were of good quality, with low bias and low variability, and resulted in censoring of less than 0.3 percent of the detections found in ground-water samples. This study did not attempt to evaluate the quality of water delivered to consumers; after withdrawal from the ground, water typically is treated, disinfected, and (or) blended with other waters to maintain acceptable water quality. Regulatory thresholds apply to treated water that is served to the consumer, not to raw ground water. However, to provide some context for the results, concentrations of constituents measured in the raw ground water were compared with health-based thresholds established by the U.S. Environmental Protection Agency (USEPA) and California Department of Public Health (CADPH) and thresholds established for aesthetic concerns (secondary maximum contaminant levels, SMCL-CA) by CADPH. VOCs and pesticides were detected in approximately half of the grid wells, and all detections in samples from CESJO wells were below health-based thresholds. All detections of nutrients and major elements in grid wells also were below health-based thresholds. Most detections of constituents of special interest, trace elements, and radioactive constituents in samples from grid wells were below health-based thresholds. Exceptions included two detections of arsenic that were above the USEPA maximum contaminant level (MCL-US), one detection of lead above the USEPA action level (AL-US), and one detection of vanadium and three detections of 1,2,3-TCP that were above the CADPH notification levels (NL-CA). All detections of radioactive constituents were below health-based thresholds, although fourteen samples had activities of radon-222 above the lower proposed MCL-US. Most of the samples from CESJO grid wells had concentrations of major elements, total dissolved solids, and trace elements below the non-enforceable thresholds set for aesthetic concerns. A few samples contained manganese or total dissolved solids at concentrations above the SMCL-CA thresholds.

California↗

USGS2023

Assessment of public and private land cover change in the United States from 1985–2018

An assessment of annual land cover on publicly and privately managed lands across the conterminous United States (CONUS) from 1985–2018 was performed, including land cover conversions within their management category, to inform future policy and land-use decision-making in natural resource management. Synthesizing land cover data with land management delineations aids our ability to address effects of land management decisions by public or private entities. The U.S. Geological Survey (USGS) Protected Areas Database of the United States (PAD-US) version 2.1 data delineate land management categories and enable examination of land cover composition and change using the USGS Land Change Monitoring, Assessment, and Projection (LCMAP) reference data. Average composition of our delineated CONUS results using LCMAP land cover classes is 40% Grass/Shrub (GS), 29% Tree Cover (TC), 18% Cropland (CP), 5% Developed (DV), 5% Wetland (WL), 1.8% Water (WR), and 0.9% Barren (BN). Private (public) land is composed of 35% (52%) GS, 27% (36%) TC, 25% (1%) CP, 7% (1%) DV, 5% (5%) WL, 2% (2%) WR, and less than 1% (3%) BN. Land cover change averaged less than 1% per year. The largest net percentage gains across CONUS were in DV land and GS, and the greatest net losses were in CP and TC. Approximately 73% of CONUS is private land and, thus, land cover change across CONUS is largely a reflection of private land change dynamics. Private compositional changes show net gains from 1985–2018 in DV (2.3%), WR (0.2%), and GS (0.1%) classes, while net losses occurred in CP (−1.9%), TC (−0.6%), WL (−0.1%), and BN (−0.01%). Public land cover changes show net gains in GS (1%), DV (0.2%), WR (0.01%), WL (0.05%), and BN (0.1%) classes, and net losses in CP (−0.3%) and TC (−1%). Our study reveals connections between land cover conversion and various policy and socioeconomic decisions through time.

Environmental Research Communications↗

USGS2017

Assessment of ecosystem response to a temporary water level drawdown and subsequent refilling at Topock Marsh, Arizona—July 2011–October 2014

Topock Marsh is a 1,637-hectare (4,045-acre) wetland adjacent to the Colorado River near Needles, California, and a main feature of Havasu National Wildlife Refuge (NWR). The U.S. Fish and Wildlife Service, in cooperation with the Bureau of Reclamation, began construction of an infrastructure improvement project in 2010 to increase the efficiency of water use and to help protect the habitats and species found within the Havasu NWR. During construction, normal water delivery from the Colorado River into Topock Marsh through the Inlet Canal was restricted, which resulted in unusually low water elevations in 2011. The U.S. Geological Survey, commissioned by the U.S. Fish and Wildlife Service, undertook the investigation of the water quality and aquatic flora and fauna during the low water conditions. Subsequently, water elevations in the marsh returned to more normal elevations after the new concrete-lined Fire Break Canal became fully operational in January 2012. The U.S. Geological Survey made 11 field trips to the Havasu NWR between July 2011 and October 2014 to assess the effects of the temporary low water conditions and the change of inflow location (from the Inlet Canal to the Fire Break Canal) on water quality and aquatic habitat. The following conditions were monitored: water quality, sediment and plant chemistry, phytoplankton, zooplankton, aquatic macro-invertebrates, and emergent and submerged aquatic vegetation (SAV). Water-quality and biota data collected during 2013–14 were then compared with data collected during the 2011–12 low water period. Once the new Fire Break Canal became operational and Colorado River water flowed regularly into the marsh, concentrations of several water quality parameters decreased (for example, specific conductance, total dissolved solids, turbidity, chlorophyll a , and total and organic nitrogen), and phytoplankton abundance was reduced at the upstream sampling stations (TP-3, TP-2, and TP-6); the water flow pushed water with higher concentrations of these components downstream (measured at TP-8). The upstream sampling locations in 2013–14 had decreased turbidity, therefore more SAV biomass accumulated, especially in shallow areas with water depths of ≤1.0 meter (≤3.3 feet). However, the furthest downstream station had higher turbidity caused by both the suspension of autochthonous sediment and high phytoplankton density and biovolume. This higher turbidity resulted in minimal SAV growth, especially in the deeper water (>1.0 meter [>3.3 feet]). Emergent vegetation not only survived the low water conditions of 2011, but expanded its areal coverage and subsequently thrived in the higher water elevations. Overall, no immediate critically negative consequences were detected for aquatic fauna or flora that could be attributd unequivocally to the effect of low water levels. Concentrations of nutrient and trace elements in all water samples were below wildlife toxicity thresholds as established by Arizona Department of Environmental Quality. Three nonnative species were discovered shortly after the Fire Break Canal went into operation. Of the three, gizzard shad ( Dorosoma cepedianum ) and Eurasian watermilfoil ( Myriophyllum spicatum ) increased substantially in numbers from 2011–14, but quagga mussels ( Dreissena bugensis ) did not increase. Future monitoring will determine the long-term impact of the new flow regime

Arizona↗

USGS2007

Surface-Water Hydrology and Quality at the Pike Hill Superfund Site, Corinth, Vermont, October 2004 to December 2005

The hydrology and quality of surface water in and around the Pike Hill Brook watershed, in Corinth, Vermont, was studied from October 2004 to December 2005 by the U.S. Geological Survey in cooperation with the U.S. Environmental Protection Agency (USEPA). Pike Hill was mined intermittently for copper from 1847 to 1919 and the site is known to be contributing trace elements and acidity to Pike Hill Brook and an unnamed tributary to Cookville Brook. The site has been listed as a Superfund site since 2004. Streamflow, specific conductance, pH, and water temperature were measured continuously and monthly at three sites on Pike Hill Brook to determine the variation in these parameters over an annual cycle. Synoptic water-quality sampling was done at 10 stream sites in October 2004, April 2005, and June 2005 and at 13 stream sites in August 2005 to characterize the quality of surface water in the watershed on a seasonal and spatial basis, as well as to assess the effects of wetlands on water quality. Samples for analysis of benthic macroinvertebrate populations were collected at 11 stream sites in August 2005. Water samples were analyzed for 5 major ions and 32 trace elements. Concentrations of trace elements at sites in the Pike Hill Brook watershed exceeded USEPA National Recommended Water Quality Criteria acute and chronic toxicity standards for aluminum, iron, cadmium, copper, and zinc. Concentrations of copper exceeded the chronic criteria in an unnamed tributary to Cookville Brook in one sample. Concentrations of sulfate, calcium, aluminum, iron, cadmium, copper, and zinc decreased with distance from a site directly downstream from the mine (site 1), as a result of dilution and through sorption and precipitation of the trace elements. Maximum concentrations of aluminum, iron, cadmium, copper, and zinc were observed during spring snowmelt. Concentrations of sulfate, calcium, cadmium, copper, and zinc, and instantaneous loads of calcium and aluminum were statistically different (p<0.05) among the three continuously monitored sites (sites 1, 4, and 5). Instantaneous loads of aluminum, iron, and copper decreased by one to three orders of magnitude from site 1 to a site 1.1 mi downstream (site 4). Instantaneous loads of sulfate were similar between sites 1, 4, and at a site 3 mi downstream (site 5). Instantaneous loads of cadmium and zinc were similar between sites 1 and 4, and loads of iron and copper were similar between sites 4 and 5. Loads of chemical constituents were compared at site 1 (closest to the mine waste piles) and site 5 (near the mouth of Pike Hill Brook and below a majority of the wetlands). Annually, the loads of dissolved cadmium and zinc at site 1 were about five times greater than loads at site 5, and the load of dissolved copper at site 1 was about 17 times greater than at site 5. The ratio of loads for dissolved cadmium, copper, and zinc to total cadmium, copper, and zinc at site 1 was about 1. Samples collected in Pike Hill Brook upstream and downstream from the wetlands during low flows in August 2005 showed that oxidation of ferrous iron and precipitation of iron-hydroxides were probably not affecting trace metals in the wetlands through sorption; however, a significant portion of the iron entering the wetlands was in particulate form and may have transported sorbed copper and other trace metals. Thus, aerobic activity in the wetlands was probably not affecting metal cycling in the watershed. Concentrations and loads of sulfate may be unlikely to define unequivocally the role of the wetlands with regard to anaerobic bacterial sulfate reduction; however, bacterial sulfate removal may have affected loads of sulfate. Loads of copper increased downstream from the wetlands and may reflect the reductive dissolution of ferric hydroxide particulates in anaerobic parts of the wetlands.Concentrations of dissolved iron increased downstream from the wetlands. The most apparent effects on the macroinvertebr

Scientific Investigations Report↗

USGS2025

Quality of groundwater used for domestic supply in the Gilroy-Hollister basin and surrounding areas, California, 2022

More than 2 million Californians rely on groundwater from domestic wells for drinking-water supply. This report summarizes a 2022 California Groundwater Ambient Monitoring and Assessment Priority Basin Project (GAMA-PBP) water-quality survey of 33 domestic and small-system drinking-water supply wells in the Gilroy-Hollister Valley groundwater basin and the surrounding areas, where more than 20,000 residents are estimated to utilize privately owned domestic wells. The study area includes the Llagas subbasin in the north, the North San Benito subbasin in the south, and the surrounding uplands. The study was focused on groundwater resources used for domestic drinking-water supply, which are mostly drawn from shallower parts of aquifer systems rather than those of groundwater resources used for public drinking-water supply in the same area. This assessment characterized the quality of ambient groundwater in the aquifer before filtration or treatment, rather than the quality of drinking water delivered to the tap. To provide context, the measured concentrations of constituents in groundwater were compared to Federal and California State regulatory and non-regulatory benchmarks for drinking-water quality. A grid-based method was used to estimate the areal proportions of groundwater resources used for domestic drinking wells that have water-quality constituents present at high concentrations (above the benchmark), moderate concentrations (between one-half of the benchmark and the benchmark for inorganic constituents, or between one-tenth of the benchmark and the benchmark for organic constituents), and low concentrations (less than one-half or one-tenth the benchmark for inorganic and organic constituents, respectively). This method provides statistically representative results at the study-area scale and permits comparisons to other GAMA-PBP study areas. In the study area, inorganic constituents in groundwater were greater than regulatory benchmarks (U.S. Environmental Protection Agency [EPA] or State of California maximum contaminant levels [MCLs]) for public drinking-water quality in 24 percent of domestic groundwater resources. The inorganic constituents present at concentrations greater than MCLs for drinking water were nitrate (as nitrogen), barium, chromium, and selenium. Total dissolved solids (TDS) or manganese were present at concentrations greater than the secondary maximum contaminant levels (SMCLs) that the State of California uses as aesthetic-based benchmarks in 48 percent of domestic groundwater resources. No volatile organic compounds or pesticide constituents were present at concentrations greater than regulatory benchmarks. Total coliform bacteria and enterococci were detected in 4 percent of domestic groundwater resources. Per- and polyfluoroalkyl substances (PFAS) were detected in 19 percent of domestic groundwater resources, and 10 percent had concentrations greater than recently enacted (April 2024) EPA MCLs. Physical and chemical factors from natural and anthropogenic sources that could affect the groundwater quality were evaluated using results from statistical testing of associations between constituent concentrations and potential explanatory variables. In this study, relevant physical factors include well construction characteristics, groundwater age, site proximity to groundwater recharge or discharge zones, and potential sources of contamination. Relevant chemical factors include the initial chemistry of the recharge water, the mineralogy of the aquifer sediments, and the subsequent shifts in chemistry as biologic and geologic reactions alter groundwater in the subsurface. Nitrate concentrations were correlated to agricultural land use, distance from the boundary of the Gilroy-Hollister Valley groundwater basin, and the proportion of modern (post-1950s) water captured by the well. Denitrification under anoxic redox conditions can mitigate some nitrate derived from fertilizer application. Total dissolved solids primarily were derived from water-rock interactions with soils and aquifer materials in the study area, but there were high concentrations where agricultural practices contributed additional TDS. Mineralogy of aquifer sediments and rocks also affect barium, selenium, boron, and chromium concentrations in the Gilroy-Hollister Valley groundwater basin. PFAS were positively correlated with urban land use and the proportion of modern water captured by the well.

California↗

USGS2022

A water quality barometer for Chesapeake Bay: Assessing spatial and temporal patterns using long-term monitoring data

This paper develops a barometer that indexes water quality in the Chesapeake Bay and summarizes quality over spatial regions and temporal periods. The barometer has a basis in risk assessment and hydrology, and is a function of three different metrics of water quality relative to numerical criteria: relative frequency of criterion attainment; magnitude of deviation from a numerical criterion; and duration of criterion attainment. Metrics associated with these features are calculated at the station level, allowing flexibility for simultaneously evaluating multiple stressors, different designated uses, and physical characteristics of the water. The barometer score is then created as a geometric mean of the three metrics. The water quality barometer (WQB) station scores may be spatially aggregated to report habitat scores across a spectrum of spatial resolutions (e.g., management segment, tidal subsystem, or the whole tidal bay). Dissolved oxygen measurements in the Chesapeake Bay collected during summer seasons of 1985 to 2020 are used to evaluate water quality. The WQB score and its bootstrapped confidence interval are reported at the station, segment, tidal subsystem and whole tidal bay levels. Notably, water quality interpreted through application of the WQB with dissolved oxygen concentration data and averaged over the 29-year period of record is good (i.e. protects aquatic living resources) in tributaries such as the James River, Rappahannock River and others; but is not as good in areas such as the Upper Tributaries and the York River. Recent summaries indicate that while the water quality is improving in much of the bay and its tidal tributaries, however, there is an indication of decline in quality in the period 20182020, especially in the upper regions of the Bay. The barometer is designed around using the time series data produced by the Chesapeake Bay Programs annual monitoring strategy; the approach has application to other large water bodies with large scale monitoring programs with extended time series or for integrating information from environmental sensor systems.

Maryland, Virginia↗

USGS2015

Design and methods of the Southeast Stream Quality Assessment (SESQA), 2014

During 2014, the U.S. Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) assessed stream quality across the Piedmont and southern Appalachian Mountain regions of the southeastern United States. This Southeast Stream Quality Assessment (SESQA) simultaneously characterized watershed and stream-reach water-quality stressors along with instream biological conditions, in order to better understand regional stressor-effects relations. The goal of SESQA is to provide communities and policymakers with information about those human and environmental factors that have the greatest impact on stream quality across the region. The SESQA design focused on hydrologic alteration and urbanization because of their importance as ecological stressors of particular concern to Southeast region resource managers. Streamflow and land-use data were used to identify and select sites representing gradients in urbanization and streamflow alteration across the region. One hundred fifteen sites were selected and sampled for as many as 10 weeks during April, May, and June 2014 for contaminants, nutrients, and sediment. This water-quality “index” period culminated with an ecological survey of habitat, periphyton, benthic macroinvertebrates, and fish at all sites. Sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing. Of the 115 sites, 59 were on streams in watersheds with varying degrees of urban land use, 5 were on streams with multiple confined animal feeding operations, and 13 were reference sites with little or no development in their watersheds. The remaining 38 “hydro” sites were on streams in watersheds with relatively little agricultural or urban development but with hydrologic alteration, such as a dam or reservoir. This report provides a detailed description of the SESQA study components, including surveys of ecological conditions, routine water sampling, deployment of passive polar organic compound integrative samplers for pesticides and contaminants of emerging concern, and synoptic sediment sampling and toxicity testing at all urban, confined animal feeding operation, and reference sites. Continuous water-quality monitoring and daily pesticide sampling efforts conducted at a subset of urban sites are also described.

Alabama, Georgia, North Carolina, South Carolina, ↗

USGS2017

Forested floristic quality index: An assessment tool for forested wetland habitats using the quality and quantity of woody vegetation at Coastwide Reference Monitoring System (CRMS) vegetation monitoring stations

The U.S. Geological Survey, in cooperation with the Coastal Protection and Restoration Authority of Louisiana and the Coastal Wetlands Planning, Protection and Restoration Act, developed the Forested Floristic Quality Index (FFQI) for the Coastwide Reference Monitoring System (CRMS). The FFQI will help evaluate forested wetland sites on a continuum from severely degraded to healthy and will assist in defining areas where forested wetland restoration can be successful by projecting the trajectories of change. At each CRMS forested wetland site there are stations for quantifying the overstory, understory, and herbaceous vegetation layers. Rapidly responding overstory canopy cover and herbaceous layer composition are measured annually, while gradually changing overstory basal area and species composition are collected on a 3-year cycle. A CRMS analytical team has tailored these data into an index much like the Floristic Quality Index (FQI) currently used for herbaceous marsh and for the herbaceous layer of the swamp vegetation. The core of the FFQI uses basal area by species to assess the quality and quantity of the overstory at each of three stations within each CRMS forested wetland site. Trees that are considered by experts to be higher quality swamp species like Taxodium distichum (bald cypress) and Nyssa aquatica (water tupelo) are scored higher than tree species like Triadica sebifera (Chinese tallow) and Salix nigra (black willow) that are indicators of recent disturbance. This base FFQI is further enhanced by the percent canopy cover in the overstory and the presence of indicator species at the forest floor. This systemic approach attempts to differentiate between locations with similar basal areas that are on different ecosystem trajectories. Because of these varying states of habitat degradation, paired use of the FQI and the FFQI is useful to interpret the vegetative data in transitional locations. There is often an inverse relation between the health of the overstory and health of the herbaceous community beneath it because of resource competition (for example, light) and differing environmental preferences between the two communities. The herbaceous layer vegetation responds rapidly to basic environmental factors such as flooding, salinity, and nutrients and can offer insight into the sustainability of swamps on a temporal scale shorter than tha of the slowly growing woody vegetation. The FFQI will be available via the CRMS spatial viewer ( http://lacoast.gov/crms2/home.aspx ), and a new score will be calculated annually for each CRMS forested wetland site as data are collected to establish trends, to compare among sites, and to evaluate specific restoration projects when applicable. The FFQI will identify forested wetland areas in need of restoration and conservation and will help define targets and trajectories for restoration planning.

Louisiana↗

USGS2002

Water quality of the Flint River basin, Alabama and Tennessee, 1999-2000

The U.S. Geological Survey monitored eight stream sites in the Flint River Basin during the period January 1999 through May 2000, to characterize patterns in the occurrence of pesticides, fecal-indicator bacteria, and nutrients in relation to season and streamflow conditions and to land-use patterns. This study is part of the National Water-Quality Assessment Program, which was designed to assess water quality as it relates to various land uses. Every water sample collected from the Flint River Basin had detectable levels of at least two pesticides; 64 percent of the samples contained mixtures of at least five pesticides. In general, pesticides detected most frequently and at highest concentrations in streams corresponded to the pesticides with the highest rates of use in the watersheds. Detections of fluometuron, norflurazon, and atrazine were more frequent (by a margin of 15 percent or more) in samples from the Flint River when compared with the frequencies of pesticide detections at 62 agricultural stream sites across the Nation. Detections of fluometuron in the Flint River were more frequent even when compared with a cotton-cultivation subset of the 62 sites. For most pesticides, maximum concentrations did not exceed criteria to protect aquatic life; however, maximum concentrations of atrazine, cyanazine, and malathion exceeded aquaticlife criteria in at least one sample. Concentrations near or exceeding the aquatic-life criteria occurred only during the spring and summer (April-July), and generally occurred during storm flows. Less than 5 percent of the estimated mass of pesticides applied annually to agricultural areas in the Flint River Basin was transported to the stream at the monitoring points on the Flint River near Brownsboro, Alabama, and on Hester Creek near Plevna, Alabama. The pesticides with the highest ratios (greater than 3 percent) of the amount transported instream to the amount applied?atrazine, metolachlor, fluometuron, and norflurazon?are preemergent herbicides applied to the soil before the crops have emerged, which increases the probability of transport in surface runoff. Concentrations of the fecal-bacteria indicator Escherichia coli (E. coli) in the Flint River and Hester Creek exceeded the U.S. Environmental Protection Agency criterion for recreation in almost all storm samples, and in many samples collected up to 6 days following a storm. Concentrations in the Flint River were strongly correlated with sample turbidity, suggesting that turbidity might be useful as a surrogate for estimating E. coli concentrations. Concentrations of the nutrients nitrogen and phosphorus in samples from the Flint River generally exceeded thresholds indicating eutrophic potential, whereas concentrations in samples from Hester Creek were generally below the thresholds. When compared with nutrient data from a set of 24 agricultural basins across the southeastern region of the United States, concentrations in the Flint River and Hester Creek were slightly above the regional median. Base-flow concentrations of certain pesticides, nutrients, and E. coli were compared to land-use information for eight sites in the Flint River Basin. The highest base-flow concentrations of aldicarb sulfoxide, fluometuron, and phosphorus were found in the tributaries with the greatest density of cotton acreage in the watershed. Similarly, high base-flow concentrations of total nitrogen were correlated with a high percentage of cultivated land in the watershed. Lack of information about distribution of stream access by livestock weakened the analysis of correlation between livestock and base-flow concentrations of E. coli and nutrients. Input of dissolved and suspended chemicals from the Flint River during storms influences water quality in the reach of the Tennessee River from which the City of Huntsville, Alabama, withdraws about 40 percent of its drinking water. During the storm of April 2-5, 2000, concentrations of several pesticides were

Water-Resources Investigations Report↗

USGS2017

Drawing a line in the sand: Effectiveness of off-highway vehicle management in California's Sonoran desert

Public land policies manage multiple uses while striving to protect vulnerable plant and wildlife habitats from degradation; yet the effectiveness of such policies are infrequently evaluated, particularly for remote landscapes that are difficult to monitor. We assessed the use and impacts of recreational vehicles on Mojave Desert washes (intermittent streams) in the Chemehuevi Desert Wildlife Management Area (DWMA) of southern California. Wash zones designated as open and closed to off-highway vehicle (OHV) activity were designed in part to protect Mojave desert tortoise ( Gopherus agassizii ) habitat while allowing recreation in designated areas. OHV tracks were monitored in washes located near access roads during winter and early spring holidays – when recreation is typically high – and at randomly dispersed locations away from roads. Washes near access roads had fewer vehicle tracks within closed than open zones; further away from roads, OHV tracks were infrequent and their occurrence was not different between wash designations. Washes were in better condition in closed zones following major holidays as indicated by less vegetation damage, presence of trash, and wash bank damage. Furthermore, the frequency of washes with live tortoises and their sign was marginally greater in closed than open wash zones. Collectively, these results suggest that low impacts to habitats in designated closed wash zones reflect public compliance with federal OHV policy and regulations in the Chemehuevi DWMA during our study. Future monitoring to contrast wash use and impacts during other seasons as well as in other DWMAs will elucidate spatial and temporal patterns of recreation in these important conservation areas.

California↗

USGS2013

American white pelicans breeding in the northern plains: productivity, behavior, movements, and migration

Nearly half of American white pelicans (Pelecanus erythrorhynchos; hereafter pelicans) are believed to nest in several large colonies in the northern plains, yet few studies had been conducted on pelicans in this region until research began in 2004 to investigate the impact of West Nile virus (WNV) on their chicks. The work reported here focused on two of the largest colonies in the region, at Bitter Lake, South Dakota, and Chase Lake, North Dakota, during 2005–10. Pelicans usually began arriving at these two breeding colonies in early April. Egg-laying began during mid-April and nest initiations continued through May. The number of nests documented at these colonies reached a high of about 15,400 at Bitter Lake and 17,300 at Chase Lake, both in 2006. During 2006–8, annual variation in hatching success was high (40 to 100 percent) at video-monitored nests, averaging 61 percent for 82 nests at Bitter Lake and 57 percent for 88 nests at Chase Lake. Although most nests contained two eggs, of those where two chicks hatched, both chicks survived to the crèche stage (about 15 days old) at only two nests. Severe weather events, disturbance, and siblicide were documented causes of early season (before mid-July) mortalities. In the late season (mid-July to fledging), WNV was the most important factor contributing to chick mortality. Nests were nearly always attended by one adult during incubation and brooding. Adults typically exchanged places at the nest around mid-day in all 3 years, apparently taking advantage of thermals to gain altitude for travel to and from foraging areas. The mean time of exchange differed by about an hour between Bitter Lake (1328 central standard time, CST) and Chase Lake (1434 CST) colonies. During incubation, nearly 3 days often passed between adult nest exchanges; after chicks hatched, exchanges usually occurred daily. Exchanges were more frequent and chicks were fed more often at successful nests than at failed nests. Adult pelicans with satellite transmitters that incorporated a Global Positioning System (GPS) foraged primarily in shallow areas of lakes and semipermanent wetlands. These areas coincide with typical habitats of crayfish, salamanders, and rough fish, which were also the foods most commonly seen in pelican regurgitates at the colonies. Several satellite-tracked pelicans made frequent round trips between their breeding colony and foraging areas, most likely to provision their chicks. Typical distances travelled to foraging sites ranged from 30 kilometers to over 90 kilometers. Return times to the colonies (about 1300 and 1500 CST at Bitter Lake and Chase Lake, respectively) supported the colony difference documented at video-monitored nests. Of 28 pelicans tagged with GPS satellite transmitters in 2005–6, 26 survived the first summer and migrated south during fall. Nineteen of these returned to the breeding region (defined as north of the latitude of South Dakota’s southern border) in at least 1 year during 2006–9; collectively, they returned to the breeding region 33 times. Very few pelicans returned to the colony where they had been tagged; many did not breed and concentrated their activities at wetland complexes in South Dakota and North Dakota, but few tagged pelicans temporally overlapped at specific sites. During 2005–9, tagged pelicans collectively made 56 migratory trips south in the fall. Most wintered in Mexico, near the gulf coast and elsewhere; others wintered in Texas, Louisiana, Mississippi, and Florida. Individuals typically returned to the same general areas each winter. Individuals rarely followed the same migratory path on their way south and north, but they often roughly repeated southerly or northerly routes among years. Ensuring a sustainable population of American white pelicans requires identification and mitigation of known threats. The work described herein has identified WNV and severe weather as important factors that potentially limit reproductive success and recruitment in the northern plains. Managers in this region could assess the influence of such factors on productivity at key colonies by annually obtaining aerial photographs during peak nesting, and estimating numbers of chicks fledged from aerial photographs or ground counts. Banding a subsample of chicks in late June or early July, followed by a sweep for bands at the end of the season, would allow estimation of mortality rates of older chicks (that normally would fledge) and help track the influence of WNV or other mortality factors over time and varying environmental conditions.

North Dakota;South Dakota↗

USGS2017

Contaminant gradients in trees: Directional tree coring reveals boundaries of soil and soil-gas contamination with potential applications in vapor intrusion assessment

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman’s coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in-planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Missouri↗

USGS2009

Eukaryotic viruses in wastewater samples from the United States

Human fecal matter contains a large number of viruses, and current bacterial indicators used for monitoring water quality do not correlate with the presence of pathogenic viruses. Adenoviruses and enteroviruses have often been used to identify fecal pollution in the environment; however, other viruses shed in fecal matter may more accurately detect fecal pollution. The purpose of this study was to develop a baseline understanding of the types of viruses found in raw sewage. PCR was used to detect adenoviruses, enteroviruses, hepatitis B viruses, herpesviruses, morbilliviruses, noroviruses, papillomaviruses, picobirnaviruses, reoviruses, and rotaviruses in raw sewage collected throughout the United States. Adenoviruses and picobirnaviruses were detected in 100% of raw sewage samples and 25% and 33% of final effluent samples, respectively. Enteroviruses and noroviruses were detected in 75% and 58% of raw sewage samples, respectively, and both viral groups were found in 8% of final effluent samples. This study showed that adenoviruses, enteroviruses, noroviruses, and picobirnaviruses are widespread in raw sewage. Since adenoviruses and picobirnaviruses were detected in 100% of raw sewage samples, they are potential markers of fecal contamination. Additionally, this research uncovered previously unknown sequence diversity in human picobirnaviruses. This baseline understanding of viruses in raw sewage will enable educated decisions to be made regarding the use of different viruses in water quality assessments. Copyright ?? 2009, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗

USGS2010

Determining sources of dissolved organic carbon and disinfection byproduct precursors to the McKenzie River, Oregon

This study was conducted to determine the main sources of dissolved organic carbon (DOC) and disinfection byproduct (DBP) precursors to the McKenzie River, Oregon (USA). Water samples collected from the mainstem, tributaries, and reservoir outflows were analyzed for DOC concentration and DBP formation potentials (trihalomethanes [THMFPs] and haloacetic acids [HAAFPs]). In addition, optical properties (absorbance and fluorescence) of dissolved organic matter (DOM) were measured to provide insight into DOM composition and assess whether optical properties are useful proxies for DOC and DBP precursor concentrations. Optical properties indicative of composition suggest that DOM in the McKenzie River mainstem was primarily allochthonous - derived from soils and plant material in the upstream watershed. Downstream tributaries had higher DOC concentrations than mainstem sites (1.6 ?? 0.4 vs. 0.7 ?? 0.3 mg L-1) but comprised <5% of mainstem flows and had minimal effect on overall DBP precursor loads. Water exiting two large upstream reservoirs also had higher DOC concentrations than the mainstem site upstream of the reservoirs, but optical data did not support in situ algal production as a source of the added DOC during the study. Results suggest that the first major rain event in the fall contributes DOM with high DBP precursor content. Although there was interference in the absorbance spectra in downstream tributary samples, fluorescence data were strongly correlated to DOC concentration (R 2 = 0.98), THMFP (R2 = 0.98), and HAAFP (R2 = 0.96). These results highlight the value of using optical measurements for identifying the concentration and sources of DBP precursors in watersheds, which will help drinking water utilities improve source water monitoring and management programs. Copyright ?? 2010 by the American Society of Agronomy.

Journal of Environmental Quality↗

USGS2008

Ground-water quality data in the middle Sacramento Valley study unit, 2006— Results from the California GAMA program

Ground-water quality in the approximately 3,340 mi 2 Middle Sacramento Valley study unit (MSACV) was investigated from June through September, 2006, as part of the California Groundwater Ambient Monitoring and Assessment (GAMA) program. The GAMA Priority Basin Assessment project was developed in response to the Groundwater Quality Monitoring Act of 2001 and is being conducted by the U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board (SWRCB). The Middle Sacramento Valley study was designed to provide a spatially unbiased assessment of raw ground-water quality within MSACV, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 108 wells in Butte, Colusa, Glenn, Sutter, Tehama, Yolo, and Yuba Counties. Seventy-one wells were selected using a randomized grid-based method to provide statistical representation of the study unit (grid wells), 15 wells were selected to evaluate changes in water chemistry along ground-water flow paths (flow-path wells), and 22 were shallow monitoring wells selected to assess the effects of rice agriculture, a major land use in the study unit, on ground-water chemistry (RICE wells). The ground-water samples were analyzed for a large number of synthetic organic constituents (volatile organic compounds [VOCs], gasoline oxygenates and degradates, pesticides and pesticide degradates, and pharmaceutical compounds), constituents of special interest (perchlorate, N-nitrosodimethylamine [NDMA], and 1,2,3-trichloropropane [1,2,3-TCP]), inorganic constituents (nutrients, major and minor ions, and trace elements), radioactive constituents, and microbial indicators. Naturally occurring isotopes (tritium, and carbon-14, and stable isotopes of hydrogen, oxygen, nitrogen, and carbon), and dissolved noble gases also were measured to help identify the sources and ages of the sampled ground water. Quality-control samples (blanks, replicates, laboratory matrix spikes) were collected at approximately 10 percent of the wells, and the results for these samples were used to evaluate the quality of the data for the ground-water samples. Field blanks rarely contained detectable concentrations of any constituent, suggesting that contamination was not a noticeable source of bias in the data for the ground-water samples. Differences between replicate samples were within acceptable ranges, indicating acceptably low variability. Matrix spike recoveries were within acceptable ranges for most constituents. This study did not attempt to evaluate the quality of water delivered to consumers; after withdrawal from the ground, water typically is treated, disinfected, or blended with other waters to maintain acceptable water quality. Regulatory thresholds apply to treated water that is served to the consumer, not to raw ground water. However, to provide some context for the results, concentrations of constituents measured in the raw ground water were compared with health-based thresholds established by the U.S. Environmental Protection Agency (USEPA) and California Department of Public Health (CDPH) and thresholds established for aesthetic concerns (secondary maximum contaminant levels, SMCL-CA) by CDPH. Comparisons between data collected for this study and drinking-water thresholds are for illustrative purposes only and are not indicative of compliance or noncompliance with regulatory thresholds. Most constituents that were detected in ground-water samples were found at concentrations below drinking-water thresholds. VOCs were detected in less than one-third and pesticides and pesticide degradates in just over one-half of the grid wells, and all detections of these constituents in samples from all wells of the MSACV study unit were below health-based thresholds. All detections of trace elements in samples from MSACV grid wells were below health-based thresholds, with the exceptions of arsenic and boron. Arsenic concentrations were above the USEPA maximum contaminant level (MCL-US) threshold in eight grid wells, and boron concentrations were above the CDPH notification level (NL-CA) in two grid wells. Arsenic was detected above the MCL-US in two flow-path wells. Arsenic, barium, boron, molybdenum, strontium, and vanadium were detected above health-based thresholds in a few of the RICE wells; these wells are not used to supply drinking water. All detections of radioactive constituents were below health-based thresholds, although six samples had activities of radon-222 above the lower proposed MCL-US threshold. Most of the samples from the MSACV wells had concentrations of major elements, total dissolved solids, and trace elements below the non-enforceable thresholds set for aesthetic concerns. Chloride and sulfate concentrations exceeded SMCL-CA thresholds in two and one grid well, respectively. Iron, manganese, and total dissolved solids concentrations were above the SMCL-CA thresholds in 1, 12, and 6 grid wells, respectively. Nitrate (nitrite plus nitrate, as dissolved nitrogen) concentrations from two grid wells were above the MCL-US threshold. There were no detections of microbial indicators in MSACV.

California↗

USGS2017

Biological effects-based tools for monitoring impacted surface waters in the Great Lakes: a multiagency program in support of the Great Lakes Restoration Initiative

There is increasing demand for the implementation of effects-based monitoring and surveillance (EBMS) approaches in the Great Lakes Basin to complement traditional chemical monitoring. Herein, we describe an ongoing multiagency effort to develop and implement EBMS tools, particularly with regard to monitoring potentially toxic chemicals and assessing Areas of Concern (AOCs), as envisioned by the Great Lakes Restoration Initiative (GLRI). Our strategy includes use of both targeted and open-ended/discovery techniques, as appropriate to the amount of information available, to guide a priori end point and/or assay selection. Specifically, a combination of in vivo and in vitro tools is employed by using both wild and caged fish (in vivo), and a variety of receptor- and cell-based assays (in vitro). We employ a work flow that progressively emphasizes in vitro tools for long-term or high-intensity monitoring because of their greater practicality (e.g., lower cost, labor) and relying on in vivo assays for initial surveillance and verification. Our strategy takes advantage of the strengths of a diversity of tools, balancing the depth, breadth, and specificity of information they provide against their costs, transferability, and practicality. Finally, a series of illustrative scenarios is examined that align EBMS options with management goals to illustrate the adaptability and scaling of EBMS approaches and how they can be used in management decisions.

Great Lakes↗

USGS2025

Environmental DNA monitoring of invasive Central American boas in St. Croix at Salt River Bay National Historical Park and Ecological Preserve (SARI)

Invasive Central American boas ( Boa imperator ) have established a reproducing population on the western side of St. Croix, U.S. Virgin Islands but prevalence throughout the island is largely unknown. The large snakes threaten endemic and endangered species through competition and predation, jeopardizing island biodiversity. Environmental DNA (eDNA) methods were used to investigate occurrence and focal areas for management efforts in the Salt River Bay National Historical Park and Ecological Preserve (SARI). To validate a previously developed assay, we collected tissue samples and 13 × 60 mL water samples from a captive boa enclosure in St. Croix. We implemented this assay for both a pilot and main field sampling effort. The pilot in December 2023 resulted in analysis of 7 × 60 mL water samples per site from SARI (3 sites) and from the western forests where boas are established (1 site). The main sampling event in July 2024 collected 15 × 60 mL water samples per site within SARI (11 sites) and western forests (4 sites). Pilot sample replicates were filtered individually, while main samples were consolidated into groups, resulting in seven replicates for pilot sites and five replicates for main event sites, totaling 103 environmental samples. eDNA was isolated using a modified phenol-chloroform isolation method to remove PCR inhibitors, and target eDNA was amplified using droplet digital PCR technology. Water samples from the captive boa amplified target eDNA in 12 of 13 samples, indicating assay effectiveness ex-situ. Low concentrations of eDNA (below the 95% limit of detection) were amplified in 4 of 5 sites in the western forest and in 8 of 14 sites within the National Historic Park. Overall, boa eDNA concentrations were consistently low, as expected in water samples targeting a semi-arboreal snake species with a low rate of eDNA shedding. Further optimization of methods could enable recovery of greater eDNA concentrations in future studies. Additional eDNA method testing and ground-truthing may help to improve the assessment of invasive Boa imperator in St. Croix.

Science Report↗

USGS2020

Assessment of multi-stressors on compositional turnover of diatom, invertebrate and fish assemblages along an urban gradient in Pacific Northwest streams (USA)

This study is part of the regional stream-quality assessment (RSQA) conducted by the U.S. Geological Survey (USGS) National Water Quality Assessment (NAWQA) project. The purpose of this study is to examine small streams along land-use and stressor gradients at the regional scale and to evaluate the relative importance of instream stressors on diatom, macroinvertebrate, and fish assemblages. In 2015, the RSQA project assessed stream quality in 82 wadeable streams that were selected along an urban land-use gradient in the Pacific Northwest Region (PNW) of the United States. This study evaluates the effects of four major categories of measured instream stressors – flow (i.e. alteration), water quality, habitat, and contaminants (in water and sediment) – on stream biota. We used gradient forest (GF) models to evaluate taxon specific responses to the various stressors for the three biotic assemblages. Results for diatom, invertebrate and fish assemblages showed that several environmental variables including substrate size, dissolved oxygen, and two or more different contaminants were selected in each of the GF models. In general, all three assemblages were negatively associated with any contaminant measures above zero, except the more tolerant taxa in each assemblage, which responded positively to contaminants. Total nitrogen (TN) and total phosphorus (TP) were important in both the diatom and invertebrate GF models but not in the fish models, which were related to temperature and stream flow. TP and TN were the top two variables for diatom GF models and various taxa responded at a range of nutrient concentrations; however, some taxa responded at low concentrations, for example around 0.02 for TP and 0.5 mg/L for TN. In general, the three biotic assemblages responded to multiple stressors following general patterns of known sensitive versus tolerant taxa for each of the biotic groups studied, yet the GF models allow us to explore taxon specific responses. For example, most of the sensitive Ephemeroptera, Plecoptera, Trichoptera invertebrate taxa (EPT) responded negatively when any contaminant increased above zero; yet some taxa such as the tolerant Trichoptera Cheumatopsyche responded positively to contaminants and many of the other stressors. The findings of this study demonstrate the value of using multiple assemblages to monitoring stressor gradients associated with urban stream systems and the importance of evaluating the responses of individual taxa to stressors.

Washington, Oregon↗