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USGS2025

A review of abrupt permafrost thaw: Definitions, usage, and a proposed conceptual framework

Purpose of Review We review how ‘abrupt thaw’ has been used in published studies, compare these definitions to abrupt processes in other Earth science disciplines, and provide a definitive framework for how abrupt thaw should be used in the context of permafrost science. Recent Findings We address several aspects of permafrost systems necessary for abrupt thaw to occur and propose a framework for classifying permafrost processes as abrupt thaw in the future. Based on a literature review and our collective expertise, we propose that abrupt thaw refers to thaw processes that lead to a substantial persistent environmental change within a few decades. Abrupt thaw typically occurs in ice-rich permafrost but may be initiated in ice-poor permafrost by external factors such as hydrologic change (i.e., increased streamflow, soil moisture fluctuations, altered groundwater recharge) or wildfire. Summary Permafrost thaw alters greenhouse gas emissions, soil and vegetation properties, and hydrologic flow, threatening infrastructure and the cultures and livelihoods of northern communities. The term ‘abrupt thaw’ has emerged in scientific discourse over the past two decades to differentiate processes that rapidly impact large depths of permafrost, such as thermokarst, from more gradual, top-down thaw processes that impact centimeters of near-surface permafrost over years to decades. However, there has been no formal definition for abrupt thaw and its use in the scientific literature has varied considerably. Our standardized definition of abrupt thaw offers a path forward to better understand drivers and patterns of abrupt thaw and its consequences for global greenhouse gas budgets, impacts to infrastructure and land-use, and Arctic policy- and decision-making.

Current Climate Change Reports↗

USGS2016

Lake oxygen isotopes as recorders of North American Rocky Mountain hydroclimate: Holocene patterns and variability at multi-decadal to millennial time scales

Lake sediment oxygen isotope records (calcium carbonate-δ 18 O) in the western North American Cordillera developed during the past decade provide substantial evidence of Pacific ocean–atmosphere forcing of hydroclimatic variability during the Holocene. Here we present an overview of 18 lake sediment δ 18 O records along with a new compilation of lake water δ 18 O and δ 2 H that are used to characterize lake sediment sensitivity to precipitation-δ 18 O in contrast to fractionation by evaporation. Of the 18 records, 14 have substantial sensitivity to evaporation. Two records reflect precipitation-δ 18 O since the middle Holocene, Jellybean and Bison Lakes, and are geographically positioned in the northern and southern regions of the study area. Their comparative analysis indicates a sequence of time-varying north–south precipitation-δ 18 O patterns that is evidence for a highly non-stationary influence by Pacific ocean–atmosphere processes on the hydroclimate of western North America. These observations are discussed within the context of previous research on North Pacific precipitation-δ 18 O based on empirical and modeling methods. The Jellybean and Bison Lake records indicate that a prominent precipitation-δ 18 O dipole (enriched-north and depleted-south) was sustained between ~ 3.5 and 1.5 ka, which contrasts with earlier Holocene patterns, and appears to indicate the onset of a dominant tropical control on North Pacific ocean–atmosphere dynamics. This remains the state of the system today. Higher frequency reversals of the north–south precipitation-δ 18 O dipole between ~ 2.5 and 1.5 ka, and during the Medieval Climate Anomaly and the Little Ice Age, also suggest more varieties of Pacific ocean–atmosphere modes than a single Pacific Decadal Oscillation (PDO) type analogue. Results indicate that further investigation of precipitation-δ 18 O patterns on short (observational) and long (Holocene) time scales is needed to improve our understanding of the processes that drive regional precipitation-δ 18 O responses to Pacific ocean–atmosphere variability, which in turn, will lead to a better understanding of internal Pacific ocean–atmosphere variability and its response to external climate forcing mechanisms.

North American Rocky Mountain↗

USGS2023

Doing the same thing over and over again and getting the same result: Assessing variance in wetland invertebrate assemblages

Past efforts to explain variation of invertebrate assemblages in freshwater wetlands have been less productive than anticipated. To explore why efforts are disappointing, we assembled large invertebrate data sets from North Dakota prairie potholes, California rock pools, and Georgia Carolina bay wetlands that addressed spatial (among wetlands) and temporal (among seasons and years) variation. We anticipated that these large data-set sizes would enable robust conclusions to be drawn, and each place had unique environmental conditions that might contribute to greater explanatory power. We used statistical techniques that partitioned variation in invertebrate assemblages into spatial and/or temporal components, and that also yielded a measure of the amount of unexplained variation; Permutational Multivariate Analysis of Variation and Principal Coordinates Analysis assessed whole assemblage variation, and Analysis of Variance or Analysis of Covariance assessed variation in taxon richness, total abundances, and abundances of wide-spread individual taxa. Across all locations, variation explained by spatial and temporal factors, and unexplained variation were of comparable magnitudes (i.e., similar R 2 values of ~ 50%). Review of other published studies indicate that this pattern is widespread. The 50% or more unexplained variation is typically ignored by researchers, who instead focus on explained fractions. We argue that, besides addressing explained spatial and temporal variation in invertebrate assemblages (e.g., control by hydrology, resources, predation), efforts to understand what contributes to currently unexplained variation, that is unrelated to local spatial or temporal controls (e.g., broad climatic and biogeographic patterns, organism physiology and behavior), will lead to a fuller comprehension of how invertebrates in freshwater wetlands are controlled.

Wetlands↗

USGS2024

Range-wide population genomic structure of the Karner blue butterfly, Plebejus (Lycaeides) samuelis

The Karner blue butterfly, Plebejus ( Lycaeides ) samuelis , is an endangered North American climate change-vulnerable species that has undergone substantial historical habitat loss and population decline. To better understand the species' genetic status and support Karner blue conservation, we sampled 116 individuals from 22 localities across the species' geographical range in Wisconsin (WI), Michigan (MI), Indiana (IN), and New York (NY). Using genomic analysis, we found that these samples were divided into three major geographic groups, NY, WI, and MI-IN, with populations in WI and MI-IN each further divided into three subgroups. A high level of inbreeding was revealed by inbreeding coefficients above 10% in almost all populations in our study. However, strong correlation between F ST and geographical distance suggested that genetic divergence between populations increases with distance, such that introducing individuals from more distant populations may be a useful strategy for increasing population-level diversity and preserving the species. We also found that Karner blue populations had lower genetic diversity than closely related species and had more alleles that were present only at low frequencies (<5%) in other species. Some of these alleles may negatively impact individual fitness and may have become prevalent in Karner blue populations due to inbreeding. Finally, analysis of these possibly deleterious alleles in the context of predicted three-dimensional structures of proteins revealed potential molecular mechanisms behind population declines, providing insights for conservation. This rich new range-wide understanding of the species' population genomic structure can contextualize past extirpations and help conserve and even enhance Karner blue genetic diversity.

Indiana, Michigan, Wisconsin↗

USGS2022

The past, present, and future of coral reef growth in the Florida Keys

Coral-reef degradation is driving global-scale reductions in reef-building capacity and the ecological, geological, and socioeconomic functions it supports. The persistence of those essential functions will depend on whether coral-reef management is able to rebalance the competing processes of reef accretion and erosion. Here, we reconstructed census-based carbonate budgets of 46 reefs throughout the Florida Keys from 1996 to 2019. We evaluated the environmental and ecological drivers of changing budget states and compared historical trends in reef-accretion potential to millennial-scale baselines of accretion from reef cores and future projections with coral restoration. We found that historically, most reefs had positive carbonate budgets, and many had reef-accretion potential comparable to the ~3 mm year −1 average accretion rate during the peak of regional reef building ~7000 years ago; however, declines in reef-building Acropora palmata and Orbicella spp. corals following a series of thermal stress events and coral disease outbreaks resulted in a shift from positive to negative budgets for most reefs in the region. By 2019, only ~15% of reefs had positive net carbonate production. Most of those reefs were in inshore, Lower Keys patch-reef habitats with low water clarity, supporting the hypothesis that environments with naturally low irradiance may provide a refugia from thermal stress. We caution that our estimated carbonate budgets are likely overly optimistic; comparison of reef-accretion potential to measured accretion from reef cores suggests that, by not accounting for the role of nonbiological physical and chemical erosion, census-based carbonate budgets may underestimate total erosion by ~1 mm year −1 (−1.15 kg CaCO 3 m −2 year −1 ). Although the present state of Florida's reefs is dire, we demonstrate that the restoration of reef-building corals has the potential to help mitigate declines in reef accretion in some locations, which could allow some key ecosystem functions to be maintained until the threat of global climate change is addressed.

Florida↗

USGS2015

Shaping species with ephemeral boundaries: The distribution and genetic structure of desert tortoise ( Gopherus morafkai ) in the Sonoran Desert region

Aim We examine the role biogeographical features played in the evolution of Morafka's desert tortoise ( Gopherus morafkai ) and test the hypothesis that G. morafkai maintains genetically distinct lineages associated with different Sonoran Desert biomes. Increased knowledge of the past and present distribution of the Sonoran Desert region's biota provides insight into the forces that drive and maintain its biodiversity. Location Sonoran Desert biogeographical region; Sonora and Sinaloa, Mexico and Arizona, USA. Methods We examined wild tortoises from Mexico ( n = 155) and Arizona ( n = 78), spanning their known distribution. We used mtDNA sequences to reconstruct matrilineal relationships and 25 microsatellite (STR) loci for Bayesian analyses of gene flow. We performed clinal analyses on both mtDNA and STR loci to determine the position and amount of introgression where lineages co-occur. We used GIS to assess the association of genetic structuring with ecological features. We used these data in a hypothesis-driven approach to assess different models of how genetic diversity is maintained and distributed in G. morafkai . Results Gopherus morafkai was found to comprise genetically and geographically distinct ‘Sonoran’ and ‘Sinaloan’ lineages. Both lineages occurred in a relatively narrow zone of overlap in Sinaloan thornscrub, where it transitions into Sonoran desertscrub. Limited introgression occurred at the contact zone. The best-fit model suggests that these lineages diverged in parapatry where the distribution of genotypes is environment-dependent and introgression is inhibited by exogenous selection. Main conclusions The historically shifting ecotone between tropical deciduous forest and Sonoran desertscrub appears to be a boundary that fostered divergence between parapatric lineages of tortoises. The sharp genetic cline between the two lineages suggests that periods of isolation in temporary refugia due to Pleistocene climatic cycling influenced divergence. Despite incomplete reproductive isolation, the Sonoran and Sinaloan lineages of G. morafkai are on separate evolutionary trajectories.

Arizona, Sonora↗

USGS2025

DNA metabarcoding and video camera collars yield different inferences about the summer diet of an arctic ungulate

The diets of wild ungulates are a foundational component of their ecology, influencing their behavior, body condition, and demography. With changing environmental conditions, there is a significant need to identify important forage items for ungulates, but this has often proved challenging. Declines in several barren-ground caribou herds across the North American Arctic have raised concerns about the influence of climate change on caribou forage conditions. Shifts in plant phenology, biomass, quality, and composition may be influencing caribou diets and subsequently affecting their body condition and demographic rates. Although forage is a primary driver of barren-ground caribou behavior and population dynamics, there is limited recent information about the specific foods they consume, and uncertainty about appropriate methods for identifying those foods. Investigators are increasingly using fecal DNA metabarcoding and video camera collars to assess ungulate diets, but comparative studies of these approaches are lacking. To examine the summer diets of barren-ground caribou, we used both fecal metabarcoding and video camera collars to identify forage used by the Porcupine caribou herd, which spans the Alaska–Yukon border. In 2021, we sampled the diets of adult females by collecting fecal samples and observing collar videos during 4 sampling occasions. We found that caribou consumed very specific forage items, and those items varied markedly across the growing season. Caribou predominantly consumed graminoids and lichens during early summer, and shrubs and forbs later in the season. Metabarcoding and video data provided significantly different estimates of diet for all taxonomic levels we evaluated, and inferences from the two approaches were often disparate. Metabarcoding failed to detect some items frequently consumed in videos, such as lichens, and indicated high use of other items rarely consumed, such as mosses. We found that video data provided greater taxonomic diversity and resolution for vascular plants and lichens, and more closely aligned with past research and biological expectations than data from fecal metabarcoding. Additional research is needed to be able to use these methods to identify the biomass of different forage items consumed.

Alaska, Yukon↗

USGS2015

Sediment transport and capacity change in three reservoirs, Lower Susquehanna River Basin, Pennsylvania and Maryland, 1900-2012

The U.S. Geological Survey (USGS) has conducted numerous sediment transport studies in the Susquehanna River and in particular in three reservoirs in the Lower Susquehanna River Basin to determine sediment transport rates over the past century and to document changes in storage capacity. The Susquehanna River is the largest tributary to Chesapeake Bay and transports about one-half of the total freshwater input and substantial amounts of sediment and nutrients to the bay. The transported loads are affected by deposition in reservoirs (Lake Clarke, Lake Aldred, and Conowingo Reservoir) behind three hydropower dams. The geometry and texture of the deposited sediments in each reservoir upstream from the three dams has been a subject of research in recent decades. Particle size deposition and sediment scouring processes are part of the reservoir dynamics. A Total Maximum Daily Load (TMDL) for nitrogen, phosphorus, and sediment was established for Chesapeake Bay to attain water-quality standards. Six states and the District of Columbia agreed to reduce loads to the bay and to meet load allocation goals for the TMDL. The USGS has been estimating annual sediment loads at the Susquehanna River at Marietta, Pennsylvania (above Lake Clarke), and Susquehanna River at Conowingo, Maryland (below Conowingo Reservoir), since the mid-1980s to predict the mass balance of sediment transport through the reservoir system. Using streamflow and sediment data from the Susquehanna River at Harrisburg, Pennsylvania (upstream from the reservoirs), from 1900 to 1981, sediment loads were greatest in the early to mid-1900s when land disturbance activities from coal production and agriculture were at their peak. Sediment loads declined in the 1950s with the introduction of agricultural soil conservation practices. Loads were dominated by climatic factors in the 1960s (drought) and 1970s (very wet) and have been declining since the 1980s through 2012. The USGS developed a regression equation to predict the sediment scour load for daily mean streamflows greater than 300,000 cubic feet per second for the Lower Susquehanna River reservoirs. A compilation of data from various sources produced a range in total sediment transported through the reservoir system and allowed for apportioning to source (watershed or scour) for various streamflows. In 2011, Conowingo Reservoir was estimated to be about 92 percent of sediment storage capacity. Since construction of Conowingo Dam in 1929 through 2012, approximately 470 million tons of sediment was transported down the Susquehanna River into the reservoir system, approximately 290 million tons were trapped, and approximately 180 million tons were transported to Chesapeake Bay. Spatial and estimated total sand deposition in Conowingo Reservoir based on historical sediment cores indicated continued migration of sand downgradient toward the dam and the winnowing of silts and clays near the dam due to scour.

Maryland, Pennsylvania↗

USGS1994

Lake-level history of Lake Michigan for the past 12,000 years: the record from deep lacustrine sediments

Collection and analysis of an extensive set of seismic-reflection profiles and cores from southern Lake Michigan have provided new data that document the history of the lake basin for the past 12,000 years. Analyses of the seismic data, together with radiocarbon dating, magnetic, sedimentologic, isotopic, and paleontologic studies of core samples, have allowed us to reconstruct lake-level changes during this recent part of the lake's history. The post-glacial history of lake-level changes in the Lake Michigan basin begins about 11.2 ka with the fall from the high Calumet level, caused by the retreat of the Two Rivers glacier, which had blocked the northern outlet of the lake. This lake-level fall was temporarily reversed by a major influx of water from glacial Lake Agassiz (about 10.6 ka), during which deposition of the distinctive gray Wilmette Bed of the Lake Michigan Formation interrupted deposition of red glaciolacustrine sediment. Lake level then continued to fall, culminating in the opening of the North Bay outlet at about 10.3 ka. During the resulting Chippewa low phase, lake level was about 80 m lower than it is today in the southern basin of Lake Michigan. The rise of the early Holocene lake level, controlled primarily by isostatic rebound of the North Bay outlet, resulted in a prominent, planar, transgressive unconformity that eroded most of the shoreline features below present lake level. Superimposed on this overall rise in lake level, a second influx of water from Lake Agassiz temporarily raised lake levels an unknown amount about 9.1 ka. At about 7 ka, lake level may have fallen below the level of the outlet because of sharply drier climate. Sometime between 6 and 5 ka, the character of the lake changed dramatically, probably due mostly to climatic causes, becoming highly undersaturated with respect to calcium carbonate and returning primary control of lake level to the isostatically rising North Bay outlet. Post-Nipissing (about 5 ka) lake level has fallen about 6 m due to erosion of the Port Huron outlet, a trend around which occurred relatively small (± ∼2 m), short-term fluctuations controlled mainly by climatic changes. These cyclic fluctuations are reflected in the sed-imentological and sediment-magnetic properties of the sediments.

Indiana, Illinois, Michigan, Wisconsin↗

USGS2012

Groundwater simulation and management models for the upper Klamath Basin, Oregon and California

The upper Klamath Basin encompasses about 8,000 square miles, extending from the Cascade Range east to the Basin and Range geologic province in south-central Oregon and northern California. The geography of the basin is dominated by forested volcanic uplands separated by broad interior basins. Most of the interior basins once held broad shallow lakes and extensive wetlands, but most of these areas have been drained or otherwise modified and are now cultivated. Major parts of the interior basins are managed as wildlife refuges, primarily for migratory waterfowl. The permeable volcanic bedrock of the upper Klamath Basin hosts a substantial regional groundwater system that provides much of the flow to major streams and lakes that, in turn, provide water for wildlife habitat and are the principal source of irrigation water for the basin's agricultural economy. Increased allocation of surface water for endangered species in the past decade has resulted in increased groundwater pumping and growing interest in the use of groundwater for irrigation. The potential effects of increased groundwater pumping on groundwater levels and discharge to springs and streams has caused concern among groundwater users, wildlife and Tribal interests, and State and Federal resource managers. To provide information on the potential impacts of increased groundwater development and to aid in the development of a groundwater management strategy, the U.S. Geological Survey, in collaboration with the Oregon Water Resources Department and the Bureau of Reclamation, has developed a groundwater model that can simulate the response of the hydrologic system to these new stresses. The groundwater model was developed using the U.S. Geological Survey MODFLOW finite-difference modeling code and calibrated using inverse methods to transient conditions from 1989 through 2004 with quarterly stress periods. Groundwater recharge and agricultural and municipal pumping are specified for each stress period. All major streams and most major tributaries for which a substantial part of the flow comes from groundwater discharge are included in the model. Groundwater discharge to agricultural drains, evapotranspiration from aquifers in areas of shallow groundwater, and groundwater flow to and from adjacent basins also are simulated in key areas. The model has the capability to calculate the effects of pumping and other external stresses on groundwater levels, discharge to streams, and other boundary fluxes, such as discharge to drains. Historical data indicate that the groundwater system in the upper Klamath Basin fluctuates in response to decadal climate cycles, with groundwater levels and spring flows rising and declining in response to wet and dry periods. Data also show that groundwater levels fluctuate seasonally and interannually in response to groundwater pumping. The most prominent response is to the marked increase in groundwater pumping starting in 2001. The calibrated model is able to simulate observed decadal-scale climate-driven fluctuations in the groundwater system as well as observed shorter-term pumping-related fluctuations. Example model simulations show that the timing and location of the effects of groundwater pumping vary markedly depending on the pumping location. Pumping from wells close (within a few miles) to groundwater discharge features, such as springs, drains, and certain streams, can affect those features within weeks or months of the onset of pumping, and the impacts can be essentially fully manifested in several years. Simulations indicate that seasonal variations in pumping rates are buffered by the groundwater system, and peak impacts are closer to mean annual pumping rates than to instantaneous rates. Thus, pumping effects are, to a large degree, spread out over the entire year. When pumping locations are distant (more than several miles) from discharge features, the effects take many years or decades to fully impact those features, and much of the pumped water comes from groundwater storage over a broad geographic area even after two decades. Moreover, because the effects are spread out over a broad area, the impacts to individual features are much smaller than in the case of nearby pumping. Simulations show that the discharge features most affected by pumping in the area of the Bureau of Reclamation's Klamath Irrigation Project are agricultural drains, and impacts to other surface-water features are small in comparison. A groundwater management model was developed that uses techniques of constrained optimization along with the groundwater flow model to identify the optimal strategy to meet water user needs while not violating defined constraints on impacts to groundwater levels and streamflows. The coupled groundwater simulation-optimization models were formulated to help identify strategies to meet water demand in the upper Klamath Basin. The models maximize groundwater pumping while simultaneously keeping the detrimental impacts of pumping on groundwater levels and groundwater discharge within prescribed limits. Total groundwater withdrawals were calculated under alternative constraints for drawdown, reductions in groundwater discharge to surface water, and water demand to understand the potential benefits and limitations for groundwater development in the upper Klamath Basin. The simulation-optimization model for the upper Klamath Basin provides an improved understanding of how the groundwater and surface-water system responds to sustained groundwater pumping within the Bureau of Reclamation's Klamath Project. Optimization model results demonstrate that a certain amount of supplemental groundwater pumping can occur without exceeding defined limits on drawdown and stream capture. The results of the different applications of the model demonstrate the importance of identifying constraint limits in order to better define the amount and distribution of groundwater withdrawal that is sustainable.

Oregon;California↗

USGS2019

Constraining dissolved organic matter sources and temporal variability in a model sub-Arctic lake

Circumpolar lakes comprise ~ 1.4 million km 2 of arctic and subarctic landscapes and are vulnerable to change in vegetation, permafrost distribution, and hydrological conditions in response to climate warming. However, the composition and cycling of dissolved organic matter (DOM) is poorly understood for these lakes because most are remote and unstudied. The goal of this study was to assess timescale and source controls on DOM composition in Canvasback Lake, a shallow, sub-Arctic lake in interior Alaska with similar hydrologic and geomorphic characteristics to about a quarter of circumpolar lake ecosystems. Lake dissolved organic carbon (DOC) concentration varied by as much as 16% from the mean (3.34 mg L −1 change) through diel cycles in spring 2016 to fall 2017 and was accompanied by minor changes in DOM composition. At the seasonal scale, DOC concentration increased from spring through fall to very high concentrations under ice in winter. Decreases in both condensed aromatic and polyphenolic compound classes and lignin carbon-normalized yield, plus increased relative abundance of aliphatic compounds, suggests that DOM composition shifts from a pulse of allochthonous DOM in the spring to more autochthonous under-ice. These changes highlight the seasonally-dynamic nature of DOM in circumpolar lakes that are poorly captured by single-visit lake surveys and underscores the need to measure DOM properties and fate consistently across multiple timescales (i.e. seasonally) to better constrain the role of DOM in lake processes. To further assess DOM sources, a suite of endmember leachates were compared to bulk lake DOM, indicating solely allochthonous inputs are not well reflected in lake DOM, highlighting the role of degradation processes or mixing with autochthonous sources. Thus, Canvasback Lake appears less well connected to terrestrial inputs compared to past studies of northern high-latitude lakes and does not behave as previous boreal lake models suggest.

Alaska↗

USGS2006

Classification tree and minimum-volume ellipsoid analyses of the distribution of ponderosa pine in the western USA

Aim? Ponderosa pine (Pinus ponderosa Douglas ex Lawson & C. Lawson) is an economically and ecologically important conifer that has a wide geographic range in the western USA, but is mostly absent from the geographic centre of its distribution - the Great Basin and adjoining mountain ranges. Much of its modern range was achieved by migration of geographically distinct Sierra Nevada (P. ponderosa var. ponderosa) and Rocky Mountain (P. ponderosa var. scopulorum) varieties in the last 10,000 years. Previous research has confirmed genetic differences between the two varieties, and measurable genetic exchange occurs where their ranges now overlap in western Montana. A variety of approaches in bioclimatic modelling is required to explore the ecological differences between these varieties and their implications for historical biogeography and impending changes in western landscapes. Location? Western USA. Methods? We used a classification tree analysis and a minimum-volume ellipsoid as models to explain the broad patterns of distribution of ponderosa pine in modern environments using climatic and edaphic variables. Most biogeographical modelling assumes that the target group represents a single, ecologically uniform taxonomic population. Classification tree analysis does not require this assumption because it allows the creation of pathways that predict multiple positive and negative outcomes. Thus, classification tree analysis can be used to test the ecological uniformity of the species. In addition, a multidimensional ellipsoid was constructed to describe the niche of each variety of ponderosa pine, and distances from the niche were calculated and mapped on a 4-km grid for each ecological variable. Results? The resulting classification tree identified three dominant pathways predicting ponderosa pine presence. Two of these three pathways correspond roughly to the distribution of var. ponderosa, and the third pathway generally corresponds to the distribution of var. scopulorum. The classification tree and minimum-volume ellipsoid model show that both varieties have very similar temperature limitations, although var. ponderosa is more limited by the temperature extremes of the continental interior. The precipitation limitations of the two varieties are seasonally different, with var. ponderosa requiring significant winter moisture and var. scopulorum requiring significant summer moisture. Great Basin mountain ranges are too cold at higher elevations to support either variety of ponderosa pine, and at lower elevations are too dry in summer for var. scopulorum and too dry in winter for var. ponderosa. Main conclusions? The classification tree analysis indicates that var. ponderosa is ecologically as well as genetically distinct from var. scopulorum. Ecological differences may maintain genetic separation in spite of a limited zone of introgression between the two varieties in western Montana. Two hypotheses about past and future movements of ponderosa pine emerge from our analyses. The first hypothesis is that, during the last glacial period, colder and/or drier summers truncated most of the range of var. scopulorum in the central Rockies, but had less dramatic effects on the more maritime and winter-wet distribution of var. ponderosa. The second hypothesis is that, all other factors held constant, increasing summer temperatures in the future should produce changes in the distribution of var. scopulorum that are likely to involve range expansions in the central Rockies with the warming of mountain ranges currently too cold but sufficiently wet in summer for var. scopulorum. Finally, our results underscore the growing need to focus on genotypes in biogeographical modelling and ecological forecasting.

Journal of Biogeography↗

USGS2011

Potential shifts in dominant forest cover in interior Alaska driven by variations in fire severity

Large fire years in which >1% of the landscape burns are becoming more frequent in the Alaskan (USA) interior, with four large fire years in the past 10 years, and 79 000 km 2 (17% of the region) burned since 2000. We modeled fire severity conditions for the entire area burned in large fires during a large fire year (2004) to determine the factors that are most important in estimating severity and to identify areas affected by deep‐burning fires. In addition to standard methods of assessing severity using spectral information, we incorporated information regarding topography, spatial pattern of burning, and instantaneous characteristics such as fire weather and fire radiative power. Ensemble techniques using regression trees as a base learner were able to determine fire severity successfully using spectral data in concert with other relevant geospatial data. This method was successful in estimating average conditions, but it underestimated the range of severity. This new approach was used to identify black spruce stands that experienced intermediate‐ to high‐severity fires in 2004 and are therefore susceptible to a shift in regrowth toward deciduous dominance or mixed dominance. Based on the output of the severity model, we estimate that 39% (∼4000 km 2 ) of all burned black spruce stands in 2004 had <10 cm of residual organic layer and may be susceptible a postfire shift in plant functional type dominance, as well as permafrost loss. If the fraction of area susceptible to deciduous regeneration is constant for large fire years, the effect of such years in the most recent decade has been to reduce black spruce stands by 4.2% and to increase areas dominated or co‐dominated by deciduous forest stands by 20%. Such disturbance‐driven modifications have the potential to affect the carbon cycle and climate system at regional to global scales.

Ecological Applications↗

USGS1972

Preliminary photointerpretation map of landslide and other surficial deposits of the Mount Hamilton quadrangle and parts of the Mount Boardman and San Jose quadrangles, Alameda and Santa Clara Counties, California

The nine San Francisco Bay region counties lie within a geologically active, young, and dynamic part of the central and northern Coast Ranges of California. Significant movements of the earth's crust are occurring here at the present time, posing numerous problems to urbanization, including some of special concern. Geological processes such as fault movements, earthquakes, land subsidence, landsliding, slow downslope movement of bedrock and surficial materials, coastal and stream erosion, flooding, and sedimentation are all potentially hazardous. Because of these factors, an understanding of the operation of physical processes in the bay region is desirable for harmonious, efficient, and safe land-use planning, particularly now, with greatly expanded pressures for urban growth. This map presents preliminary information about one aspect of the physical environment necessary to sound land-use planning--the nature and distribution of surficial deposits. Because surficial deposits are common and well developed in much of the bay region, it is useful to know how and why they have formed, as well as what properties they possess. When maps like this are used in combination with other types of environmental information, such as data on soils, bedrock geology, slopes, vegetation, climatic variation, seismic response, and hydrology, it should be easier to arrive at sound decisions regarding the physical aspects of land use. The U.S. Geological Survey is studying many of these factors in the bay region and hopes to provide the community with much of the required information as part of its San Francisco Bay Region Study in cooperation with the Department of Housing and Urban Development. The representation of surficial deposits on this map reflects the way in which a geologist, working exclusively with aerial photographs, interpreted the origin of various elements of the present landscape. The deposits shown here have not been examined in the field. However, by viewing overlapping vertical aerial photographs through a stereoscope, the geologist sees a three-dimensional relief model of the ground surface and can study and interpret the origins of landforms with considerable ease. In fact, for mapping surficial deposits, particularly in reconnaissance-type studies, photointerpretation has advantages over both ground observations and laboratory studies of surficial materials. Of course, better information can be provided when all aspects of the study are integrated. These preliminary photointerpretation maps are only the first stage in a detailed study of surficial deposits in the bay region, but they should provide land-use planners with immediately useful information about the regional distribution of landslide and other surficial deposits. This map indicates the dominant surficial processes that have probably been operative by showing the distribution of different types of surficial deposits. Processes such as weathering, erosion, sedimentation, and the slow as well as rapid downslope movement of earth materials have constantly reshaped the land surface in the past and will continue to in the future, although at varying rates. The processes are interrelated to varying degrees. For example, crustal uplift of the Coast Ranges will lead to increased erosion and downcutting by streams that in turn generally results in increased deposition of sediments in river valleys, lakes, and shoreline areas. Older flood planes and river deposits may be eroded, leaving elevated terrace deposits. In addition, downcutting by streams may cause adjacent slopes to become unstable, thereby increasing the possibility of slope failures. Man's activities can alter natural physical processes in many ways. Simple acts such as overwatering a lawn or placing a septic tank drainfield in ground that is marginally stable may weaken the bedrock and surficial materials enough to induce landsliding. Relatively stable areas may be made unstable as a result of construction activities that involve cutting or oversteepening of natural slopes. Engineers, builders, conservationists, and others concerned with land use must evaluate the potential effects of all types of development, and maps that show the nature and distribution of surficial deposits should provide much of the basic information they need. This map, then, shows the cumulative effects of various processes that have yielded surficial deposits up to the time the photographs used for photointerpretation were taken. It does not indicate directly areas where processes will be most active, nor does it show the rate at which they will operate. However, knowledge of the history of geologic events is a key to understanding and predicting the evolution of an area, even where man's activities significantly change the character of the land. Almost all new landslides, for example, occur in areas with a history of landslide activity.

California↗

USGS2003

Oxygen-18 concentrations in recent precipitation and ice cores on the Tibetan Plateau

A detailed study of the climatic significance of δ 18 O in precipitation was completed on a 1500 km southwest-northeast transect of the Tibetan Plateau in central Asia. Precipitation samples were collected at four meteorological stations for up to 9 years. This study shows that the gradual impact of monsoon precipitation affects the spatial variation of δ 18 O-T relationship along the transect. Strong monsoon activity in the southern Tibetan Plateau results in high precipitation rates and more depleted heavy isotopes. This depletion mechanism is described as a precipitation “amount effect” and results in a poor δ 18 O-T relationship at both seasonal and annual scales. In the middle of the Tibetan Plateau, the effects of the monsoon are diminished but continue to cause a reduced correlation of δ 18 O and temperature at the annual scale. At the monthly scale, however, a significant δ 18 O-T relationship does exist. To the north of the Tibetan Plateau beyond the extent of the effects of monsoon precipitation, δ 18 O in precipitation shows a strong temperature dependence. δ 18 O records from two shallow ice cores and historic air temperature data were compared to verify the modern δ 18 O-T relationship. δ 18 O in Dunde ice core was positively correlated with air temperature from a nearby meteorological station in the north of the plateau. The δ 18 O variation in an ice core from the southern Plateau, however, was inversely correlated with precipitation amount at a nearby meteorological station and also the accumulation record in the ice core. The long-term variation of δ 18 O in the ice core record in the monsoon regions of the southern Tibetan Plateau suggest past monsoon seasons were probably more expansive. It is still unclear, however, how changes in large-scale atmosphere circulation might influence summer monsoon precipitation on the Tibetan Plateau.

Journal of Geophysical Research D: Atmospheres↗

USGS2013

National assessment of shoreline change: historical shoreline change along the Pacific Northwest coast

Beach erosion is a chronic problem along most open ocean shores of the United States. As coastal populations continue to increase and infrastructure is threatened by erosion, there is increased demand for accurate information regarding past and present trends and rates of shoreline movement. There is also a need for a comprehensive analysis of shoreline movement that is consistent from one coastal region to another. To meet these national needs, the U.S. Geological Survey (USGS) is conducting an analysis of historical shoreline changes along the open-ocean sandy shores of the conterminous United States and parts of Hawaii, Alaska, and the Great Lakes. One purpose of this work is to develop standard, repeatable methods for mapping and analyzing shoreline movement so that periodic, systematic, and internally consistent updates regarding coastal erosion and land loss can be made nationally. In the case of the analysis of shoreline change in the Pacific Northwest (PNW), the shoreline is the interpreted boundary between the ocean water surface and the sandy beach. This report on the PNW coasts of Oregon and Washington is the seventh in a series of regionally focused reports on historical shoreline change. Previous investigations include analyses and descriptive reports of the U.S. Gulf of Mexico (Morton and others, 2004), the southeastern Atlantic (Morton and Miller, 2005), the sandy shorelines (Hapke and others, 2006) and coastal cliffs (Hapke and Reid, 2007) of California, the New England and mid-Atlantic coasts (Hapke and others, 2011), and parts of the Hawaii coast (Fletcher and others, 2012). Like the earlier reports in this series, this report summarizes the methods of analysis, interprets the results of the analysis, provides explanations regarding long- and short-term trends and rates of shoreline change, and describes how different coastal communities are responding to coastal erosion. This report differs from the early USGS reports in the series in that those shoreline change analyses incorporated only four total shorelines to represent specific time periods. This assessment of the PNW incorporates all available shorelines that meet minimum quality standards for resolution and positional accuracy. Shoreline change evaluations are based on a comparison of historical shoreline positions digitized from maps or aerial photographic data sources with recent shorelines, at least one of which is derived from lidar surveys. The historical shorelines cover a variety of time periods ranging from the 1800s through the 1980s, whereas the lidar shoreline is from 2002. Long-term rates of change are calculated using all available shoreline data and short-term rates of change are calculated using the lidar shoreline and the historical shoreline that will produce an assessment for a 15- to 35-year period. The rates of change presented in this report represent conditions up to the date of only the most recent shoreline data and therefore are not intended for predicting future shoreline positions or rates of change. The PNW coast was subdivided into eight analysis regions for the purpose of graphically reporting regional trends in shoreline change rates. The average rate of long-term shoreline change for the entire PNW coast was 0.9 meter per year (m/yr) of progradation with an uncertainty of 0.07 m/yr. This rate is based on 8,823 individual transects, of which 36 percent was determined to be eroding. Long-term shoreline change was generally more progradational in Washington than in Oregon. This is primarily due to the influence of the Columbia River and human perturbations to the natural system, particularly the construction of jetties at both the mouth of the Columbia River and at Grays Harbor, Washington. The majority of the beaches in southwestern Washington have responded to these large-scale engineered structures by experiencing dramatic beach progradation during the past century. Although these beaches are still responding to the human effects, in several locations beaches that had been rapidly prograding are now either prograding at a slower rate or eroding. The average rate of short-term shoreline change in the PNW was also progradational at a rate of 0.9 m/yr with an uncertainty of 0.03 m/yr. This rate is based on 9,087 individual transects, of which 44 percent was determined to be eroding. Similar to the results of the long-term shoreline change analysis, the shorelines in Washington were typically more progradational than those in Oregon in the short term. However, many stretches of coast in Oregon are either less accretional, changed from accretional to erosional, or more erosional when comparing the long- and short-term rate calculations. In the long and short term, there are significantly different historical shoreline change trends for beaches deriving their modern sediments from the Columbia River in southwestern Washington and northwestern Oregon, and beaches elsewhere in the PNW. The majority of shorelines in Oregon and in Washington’s Olympic Peninsula are not influenced by the human effects to the Columbia River littoral cell and typically have not experienced the human-induced century-scale trends apparent in southwestern Washington and northwestern Oregon. An increase in erosion hazards in much of Oregon may be related to the effects of sea-level rise and increasing storm wave heights. Of importance, particularly in the short term, is the alongshore variability in land uplift rates due to tectonics, which results in an alongshore varying rate of relative sea level rise that appears to at least partially control the regional variability in short-term shoreline change rates. Other climate related processes, such as the occurrence of major El Niño events, also significantly affect the shoreline changes in the region. Major El Niño events elevate monthly mean sea levels by tens of centimeters throughout the winter and produce a shift in the storm tracks, resulting in alongshore redistributions in sand volumes on the beaches, leading to hotspot beach erosion and property losses north of headlands and tidal inlets to bays and estuaries. There are limited modern-day sources of sand to Oregon’s beaches, with much of the sand being relict in having arrived thousands of years ago at a time of lowered sea levels when headlands did not prevent the alongshore movement of the beach sediments, the result being that many beaches today are deficient in sand volumes and therefore do not provide sufficient buffer protection to backshore properties during winter storms.

Oregon;Washington↗

USGS2011

Chronology, sedimentology, and microfauna of groundwater discharge deposits in the central Mojave Desert, Valley Wells, California

During the late Pleistocene, emergent groundwater supported persistent and long-lived desert wetlands in many broad valleys and basins in the American Southwest. When active, these systems provided important food and water sources for local fauna, supported hydrophilic and phreatophytic vegetation, and acted as catchments for eolian and alluvial sediments. Desert wetlands are represented in the geologic record by groundwater discharge deposits, which are also called spring or wetland deposits. Groundwater discharge deposits contain information on the timing and magnitude of past changes in water-table levels and, thus, are a source of paleohydrologic and paleoclimatic information. Here, we present the results of an investigation of extensive groundwater discharge deposits in the central Mojave Desert at Valley Wells, California. We used geologic mapping and stratigraphic relations to identify two distinct wetland sequences at Valley Wells, which we dated using radiocarbon, luminescence, and uranium-series techniques. We also analyzed the sediments and microfauna (ostracodes and gastropods) to reconstruct the specific environments in which they formed. Our results suggest that the earliest episode of high water-table conditions at Valley Wells began ca. 60 ka (thousands of calendar yr B.P.), and culminated in peak discharge between ca. 40 and 35 ka. During this time, cold (4–12 °C) emergent groundwater supported extensive wetlands that likely were composed of a wet, sedge-rush-tussock meadow mixed with mesic riparian forest. After ca. 35 ka, the water table dropped below the ground surface but was still shallow enough to support dense stands of phreatophytes through the Last Glacial Maximum (LGM). The water table dropped further after the LGM, and xeric conditions prevailed until modest wetlands returned briefly during the Younger Dryas cold event (13.0–11.6 ka). We did not observe any evidence of wet conditions during the Holocene at Valley Wells. The timing of these fluctuations is consistent with changes in other paleowetland systems in the Mojave Desert, the nearby Great Basin Desert, and in southeastern Arizona, near the border of the Sonoran and Chihuahuan Deserts. The similarities in hydrologic conditions between these disparate locations suggest that changes in groundwater levels during the late Pleistocene in desert wetlands scattered throughout the American Southwest were likely driven by synoptic-scale climate processes.

California↗

USGS1999

Sources and chronology of nitrate contamination in spring waters, Suwannee River basin, Florida

A multi-tracer approach, which consisted of analyzing water samples for n aturally occurring chemical and isotopic indicators, was used to better understand sources and chronology of nitrate contamination in spring wate rs discharging to the Suwannee and Santa Fe Rivers in northern Florida. Dur ing 1997 and 1998, as part of a cooperative study between the Suwannee River Water Management District and the U.S. Geological Survey, water samples were collected and analyzed from 24 springs and two wells for major ions, nutrients, dissolved organic carbon, and selected environmental isotopes [18O/16O, D/H, 13C/12C, 15N/14N]. To better understand when nitrate entered the ground-water system, water samples were analyzed for chlorofluorocarbons (CFCs; CCl3F, CCl2F2, and C2Cl3F3) and tritium (3H); in this way, the apparent ages and residence times of spring waters and water from shallow zones in the Upper Floridan aquifer were determined. In addition to information obtained from the use of isotopic and other chemical tracers, information on changes in land-use activities in the basin during 1954-97 were used to estimate nitrogen inputs from nonpoint sources for five counties in the basin. Changes in nitrate concentrations in spring waters with time were compared with estimated nitrogen inputs for Lafayette and Suwannee Counties. Agricultural activities [cropland farming, animal farming operations (beef and dairy cows, poultry, and swine)] along with atmospheric deposition have contributed large quantities of nitrogen to ground water in the Suwannee River Basin in northern Florida. Changes in agricultural land use during the past 40 years in Alachua, Columbia, Gilchrist, Lafayette, and Suwannee Counties have contributed variable amounts of nitrogen to the ground-water system. During 1955-97, total estimated nitrogen from all nonpoint sources (fertilizers, animal wastes, atmospheric deposition, and septic tanks) increased continuously in Gilchrist and Lafayette Counties. In Suwannee, Alachua, and Columbia Counties, estimated nitrogen inputs from all nonpoint sources peaked in the late 1970's corresponding to the peak use in fertilizer during this time. Fertilizer use in Columbia, Gilchrist, Lafayette, and Suwannee Counties increased substantially during 1993-97. The heavy use of fertilizers in the basin is corroborated by nitrogen isotope data. Values of d15N of nitrate (d15N-NO3) in spring waters range from 2.7 per mil (SUW718971) to 10.6 per mil (Poe Spring) with a median of 5.4 per mil. The range of values indicates that nitrate in the sampled spring waters most likely originates from a mixture of inorganic (fertilizers) and organic (animal wastes) sources; however, higher d15N values for Poe and Lafayette Blue Springs indicate that an organic source of nitrogen probably is contributing nitrate to these spring waters. Water samples from two wells sampled in Lafayette County have high d15N-NO3 values of 11.0 and 12.1 per mil, indicating the predominance of an organic source of nitrate. These two wells are located near dairy and poultry farms, where leachate from animal wastes may contribute nitrate to ground water. Dissolved-gas data (nitrogen, argon, and oxygen) indicate that denitrification has not removed large amounts of nitrate from the ground-water system. Thus, variations in d15N-NO3 values of spring waters can be attributed to variations in d15N-NO3 values of ground-water recharge, and can be used to obtain information about source(s) of nitrate. Extending the use of age-dating techniques (CFCs and 3H) to spring waters in complex karst systems required the use of several different approaches for estimating age and residence time of ground water discharging to springs. These approaches included the use of a simple reservoir model, a piston-flow model, an exponential model, and a binary-mixing model. When age data (CFC-11, CFC-113, and 3H) are combined for all springs, models that incorporate exponential mixtures seem to provide reliable estimates of average residence times of ground water discharging to springs. Whereas, data for some individual springs fit a binary-mixing model with more than 50 percent young water (recharged within the past 5 years), data from other individual springs fit a piston-flow model with a water age of about 25 years. The young ages of several spring waters (such as SUW718971, SUW725971, and Ginnie Spring) indicate the high vulnerability of the springs to contamination. For most springs, CFCs suggest that a large fraction of the water is more than 20 years old. Springs with lower flows tend to have young ages (shallow ground-water flow systems), whereas springs with higher flows tend to have older ages (deep ground-water flow systems). The chemical composition of spring waters can be used as a qualitative indicator of age and ground-water residence time. Nitrate-nitrogen concentrations and dissolved oxygen in spring waters are inversely related to the apparent ages of spring waters and ground-water residence time in the basin. Silica concentrations increase as the age of spring waters increase. Long-term trends in nitrate concentrations in selected spring waters were compared with estimated inputs of nitrogen from various sources in Suwannee and Lafayette Counties. In both counties, trends in nitrate concentrations in spring waters closely followed the estimated contribution of nitrogen from fertilizers. Decreasing nitrate concentrations in spring waters from Suwannee County followed the decrease in estimated fertilizer use from the mid-1970's to the early 1990's. Increasing nitrate concentrations in sprin g waters from Lafayette County followed the steady increase in fertilizer use from the early 1960's to the mid-1990's The relation between the concentration of nitrate in ground water and the amount of nitrogen that is added to a ground-water contributing area for a spring is controlled by complex interactions among hydrogeologic, land-use, and climatic factors, as well as several other land-management factors. Spring waters represent mixtures of converging flow paths that contain ground water with a range of ages. Even if nitrogen inputs were reduced substantially, it may take decades for nitrate concentrations in the ground-water system to return to near background levels.

Florida↗