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At least 1,153 records · Page 64Linked to original sources
USGS2013

Geochemical changes and fracture development in Woodford Shale cores following hydrous pyrolysis under uniaxial confinement

A uniaxial confinement clamp was used on Woodford Shale cores in hydrous pyrolysis experiments to study fracture development during thermal maturation. The clamp simulates overburden in that it prevents cores from expanding perpendicular to bedding fabric during the volume-increasing reactions associated with petroleum generation. Cores were cut from a slab of immature Woodford Shale and subjected to hydrous pyrolysis under confinement at 300, 330, and 365 °C for 72 hours to induce thermal maturities ranging from early bitumen to maximum expelled-oil generation. Two additional cores were used as experimental controls: (1) a confined core was saturated with water by heating it to 100 °C under hydrous pyrolysis conditions for 72 hours to use for characterization of the original rock, and (2) an unconfined core was heated at 365 °C for 72 hours to evaluate the effects of confinement on petroleum generation and expulsion. X-ray computed tomography (X-CT) imaging and other analyses identified five distinct beds within the cored interval. Using a tentative classification system, beds 1, 2, and 3 are described as dolomitic marlstone (DM) with total organic carbon (TOC) contents of 7.7, 5.8, and 7.7 wt. %, respectively; bed 4 is a cherty quartzose claystone (CQC) with TOC content of 5.5 wt. %; and bed 5 is a quartzose claystone with TOC content of 10.9 wt. %. Bed samples all had similar Rock-Eval hydrogen indices (600 ± 46 mg S2/g-TOC) and Tmax values (433 ± 2 °C), demonstrating organic matter uniformity and low thermal maturity. The X-CT scan of the core heated to 100 °C showed preexisting fractures that were nearly perpendicular to the bedding fabric primarily in the low-TOC DM bed 2 and CQC bed 4. Heating led to enhancement of preexisting fractures in the confined cores with the greatest enhancement occurring in CQC bed 4. The fractures increased in size and intensity with temperature. This is attributed to the internal pressure generated by volume-increasing reactions during the conversion of kerogen to bitumen and bitumen to oil and gas. The unconfined core heated to 365 °C showed no enhanced fracturing and its X-CT-scan resembled that of the 100 °C confined core. Comparison of the oil and gas yields from the confined and unconfined cores heated to 365 °C showed no significant differences, indicating that product expulsion is not inhibited by the procedure used in this study. These results also indicate that fracturing during thermal maturation is driven primarily by the enhancement of existing fractures.

Conference Paper↗
USGS2006

North Slope, Alaska: Source rock distribution, richness, thermal maturity, and petroleum charge

Four key marine petroleum source rock units were identified, characterized, and mapped in the subsurface to better understand the origin and distribution of petroleum on the North Slope of Alaska. These marine source rocks, from oldest to youngest, include four intervals: (1) Middle-Upper Triassic Shublik Formation, (2) basal condensed section in the Jurassic-Lower Cretaceous Kingak Shale, (3) Cretaceous pebble shale unit, and (4) Cretaceous Hue Shale. Well logs for more than 60 wells and total organic carbon (TOC) and Rock-Eval pyrolysis analyses for 1183 samples in 125 well penetrations of the source rocks were used to map the present-day thickness of each source rock and the quantity (TOC), quality (hydrogen index), and thermal maturity (Tmax) of the organic matter. Based on assumptions related to carbon mass balance and regional distributions of TOC, the present-day source rock quantity and quality maps were used to determine the extent of fractional conversion of the kerogen to petroleum and to map the original TOC (TOCo) and the original hydrogen index (HIo) prior to thermal maturation. The quantity and quality of oil-prone organic matter in Shublik Formation source rock generally exceeded that of the other units prior to thermal maturation (commonly TOCo > 4 wt.% and HIo > 600 mg hydrocarbon/g TOC), although all are likely sources for at least some petroleum on the North Slope. We used Rock-Eval and hydrous pyrolysis methods to calculate expulsion factors and petroleum charge for each of the four source rocks in the study area. Without attempting to identify the correct methods, we conclude that calculations based on Rock-Eval pyrolysis overestimate expulsion factors and petroleum charge because low pressure and rapid removal of thermally cracked products by the carrier gas retards cross-linking and pyrobitumen formation that is otherwise favored by natural burial maturation. Expulsion factors and petroleum charge based on hydrous pyrolysis may also be high compared to nature for a similar reason. Copyright ?? 2006. The American Association of Petroleum Geologists. All rights reserved.

American Association of Petroleum Geologists Bulle↗
USGS2007

Paleovalley fills: Trunk vs. tributary

A late Mississippian-early Pennsylvanian eustatic sea level drop resulted in a complex lowstand drainage network being eroded across the Illinois Basin in the eastern United States. This drainage system was filled during the early part of the Pennsylvanian. Distinct differences can be recognized between the trunk and tributary paleovalley fills. Fills preserved within the trunk systems tend to be fluvially dominated and consist of bed-load deposits of coarse- to medium-grained sandstone and conglomerate. Conversely, the incised valleys of tributary systems tend to be filled with dark mudstone, thinly interbedded sandstones, and mudstones and siltstones. These finer grained facies exhibit marine influences manifested by tidal rhythmites, certain traces fossils, and macro- and microfauna. Examples of tributary and trunk systems, separated by no more than 7 km (4.3 mi) along strike, exhibit these styles of highly contrasting fills. Useful analogs for understanding this Pennsylvanian system include the Quaternary glacial sluiceways present in the lower Ohio, White, and Wabash river valleys of Indiana (United States) and the modern Amazon River (Brazil). Both the Amazon River and the Quaternary rivers of Indiana have (or had) trunk rivers that are (were) dominated by large quantities of bed load relative to their tributaries. The trunk valley systems of these analogs aggraded much more rapidly than their tributary valleys, which evolved into lakes because depositional rates along the trunk are (were) so high that the mouths of the tributaries have been dammed by bed-load deposits. These Holocene systems illustrate that sediment yields can significantly influence the nature of fill successions within incised valleys independent of rates of sea level changes or proximity to highstand coastlines. Copyright ?? 2007. The American Association of Petroleum Geologists. All rights reserved.

American Association of Petroleum Geologists Bulle↗
USGS1991

Mineralogy of the silt fraction in surficial sediments from the outer continental shelf off southeastern New England

The silt-sized heavy mineral assemblage, which is predominantly detrital, has been concentrated in this fraction by hydraulic factors and ranges between 11.8 wt. % of the silt fraction in the sandy sediments near Georges Bank to 3.4% in the clayey silt deposit south of Martha's Vineyard. By contrast, the sand fraction averages only 1.5% heavy minerals. Lateral variability within the silt-sized heavy mineral assemblage is considerable. Zircon and ilmenite abundances progressively decrease from east to west on the continental shelf off southeastern New England. Conversely, abundances within the amphibole and the epidote groups increase from east to west.

Journal of Sedimentary Petrology↗
USGS2011

Tracking solutes and water from subsurface drip irrigation application of coalbed methane-produced waters, Powder River Basin, Wyoming

One method to beneficially use water produced from coalbed methane (CBM) extraction is subsurface drip irrigation (SDI) of croplands. In SDI systems, treated CBM water (injectate) is supplied to the soil at depth, with the purpose of preventing the buildup of detrimental salts near the surface. The technology is expanding within the Powder River Basin, but little research has been published on its environmental impacts. This article reports on initial results from tracking water and solutes from the injected CBM-produced waters at an SDI system in Johnson County, Wyoming. In the first year of SDI operation, soil moisture significantly increased in the SDI areas, but well water levels increased only modestly, suggesting that most of the water added was stored in the vadose zone or lost to evapotranspiration. The injectate has lower concentrations of most inorganic constituents relative to ambient groundwater at the site but exhibits a high sodium adsorption ratio. Changes in groundwater chemistry during the same period of SDI operation were small; the increase in groundwater-specific conductance relative to pre-SDI conditions was observed in a single well. Conversely, groundwater samples collected beneath another SDI field showed decreased concentrations of several constituents since the SDI operation. Groundwater-specific conductance at the 12 other wells showed no significant changes. Major controls on and compositional variability of groundwater, surface water, and soil water chemistry are discussed in detail. Findings from this research provide an understanding of water and salt dynamics associated with SDI systems using CBM-produced water.

Wyoming↗
USGS2024

Structural charge site influence on the interlayer hydration of expandable three-sheet clay minerals

Previous investigations have demonstrated the influences of interlayer cation composition, relative humidity, temperature, and magnitude of interlayer surface charge on the interlayer hydration of montmorillonites and vermiculites. It has been suggested that the sites of layer charge deficiencies may also have an influence upon the amount of hydration that can take place in the interlayers of expandable clay minerals. If the interlayer cation-to-layer bonds are considered as ideally electrostatic, the magnitude of the forces resisting expansion may be expressed as a form of Coulomb's law. If this effect is significant, expandable structures in which the charge-deficiency sites are predominantly in the tetrahedral sheet should have less pronounced swelling properties than should structures possessing charge deficiencies located primarily in the octahedral sheet. Three samples that differed in location of layer charge sites were selected for study. An important selection criterion was a non-correlation between tetrahedral charge sites and high surface-charge density, and between octahedral charge sites and low surface-charge density. The effects of differences in interlayer cation composition were eliminated by saturating portions of each sample with the same cations. Equilibrium (001) d values at controlled constant humidities were used as a measure of the relative degree of interlayer hydration. Although no correlation could be made between the degree of interlayer hydration and total surface-charge density, the investigation does not eliminate total surface-charge density as being significant to the swelling properties of three-sheet clay-mineral structures. The results do indicate a correlation between more intense expandability and predominance of charge deficiencies in the octahedral sheet. Conversely, less intense swelling behavior is associated with predominantly tetrahedral charge deficiencies.

Clays and Clay Minerals↗
USGS2024

Considerations and applications of the illite/smectite geothermometer in hydrocarbon-bearing rocks of Miocene to Mississippian age

Empirical relationships between clay mineral transformations and temperature provide a basis for the use of clay minerals as geothermometers. Clay-mineral geothermometry has been applied mainly to diagenetic, hydrothermal, and contact- and burial-metamorphic settings to better understand the thermal histories of migrating fluids, hydrocarbon source beds, and ore and mineral formation. Quantitatively, the most important diagenetic clay mineral reaction in sedimentary rocks is the progressive transformation of smectite to illite via mixed-layer illite/smectite (I/S). Changes in both the illite/smectite ratio and ordering of I/S, as determined from X-ray powder diffraction profiles, correlate with changes in temperature due to burial depth. Although the smectite-to-illite reaction may be influenced by several factors, reaction progress appears to be strongly controlled by temperature. Studies show that the model proposed by Hoffman and Hower in 1979 is applicable in burial diagenetic settings from about 5 to 330 Ma, and includes most rocks about Miocene to Mississippian in age. Reliability of the I/S geothermometer is, however, dependent upon a good understanding of the rock's original clay-mineral composition. Changes in the ordering of I/S are particularly useful in the exploration for hydrocarbons because of the common coincidence between the temperatures for the conversion from random-to-ordered I/S and those for the onset of peak, or main phase, oil generation. Here, the utility of the I/S geothermometer is reviewed in hydrocarbon-bearing rocks of Miocene to Mississippian age. Using three common applications, the I/S geothermometer is compared to other mineral geothermometers, organic maturation indices, and grades of indigenous hydrocarbons. Good agreement between changes in ordering of I/S and calculated maximum burial temperatures or hydrocarbon maturity suggests that I/S is a reliable semiquantitative geothermometer and an excellent measures of thermal maturity.

Clays and Clay Minerals↗
USGS2002

Influence of hydrologic processes on reproduction of the introduced bivalve Potamocorbula amurensis in northern San Francisco Bay, California

Monthly censusing of reproductive condition of the Asian clam Potamocorbula amurensis at four sites in northern San Francisco Bay over a 9-yr period revealed year-to-year differences in local reproductive activity that are associated with patterns of hydrologic variability. Between 1989 and 1992, Northern California experienced a drought, whereas the period between 1993 and 1998 was marked by a mix of wet and dry years. We took advantage of the extreme year-to-year differences to examine reproductive responses to river inflow patterns. Populations of P. amurensis at the upstream sites in Suisun Bay and Carquinez Strait were more reproductively active during wet years than dry years. Conversely, at the downstream site in San Pablo Bay, the population was more reproductively active during dry years than wet years. We suggest that the different reproductive patterns observed reflect the clam's response to different sources of food. During wet years, organic matter from the rivers augments food supplies in Suisun Bay. During dry years, when inflow into the San Francisco Bay Estuary from the rivers is reduced, water transported from the adjacent ocean into the estuary as far as San Pablo Bay provides a supplemental food supply for the local production. The populations take advantage of these spatially distinct food supplies by initiating and maintaining local reproductive activity. We conclude that the ability of P. amurensis to consume and use various types of food to regulate its reproductive activity is part of the reason for its success as an invasive species.

California↗
USGS2014

Re-evaluating neonatal-age models for ungulates: Does model choice affect survival estimates?

New-hoof growth is regarded as the most reliable metric for predicting age of newborn ungulates, but variation in estimated age among hoof-growth equations that have been developed may affect estimates of survival in staggered-entry models. We used known-age newborns to evaluate variation in age estimates among existing hoof-growth equations and to determine the consequences of that variation on survival estimates. During 2001–2009, we captured and radiocollared 174 newborn (≤24-hrs old) ungulates: 76 white-tailed deer ( Odocoileus virginianus ) in Minnesota and South Dakota, 61 mule deer ( O. hemionus ) in California, and 37 pronghorn ( Antilocapra americana ) in South Dakota. Estimated age of known-age newborns differed among hoof-growth models and varied by >15 days for white-tailed deer, >20 days for mule deer, and >10 days for pronghorn. Accuracy (i.e., the proportion of neonates assigned to the correct age) in aging newborns using published equations ranged from 0.0% to 39.4% in white-tailed deer, 0.0% to 3.3% in mule deer, and was 0.0% for pronghorns. Results of survival modeling indicated that variability in estimates of age-at-capture affected short-term estimates of survival (i.e., 30 days) for white-tailed deer and mule deer, and survival estimates over a longer time frame (i.e., 120 days) for mule deer. Conversely, survival estimates for pronghorn were not affected by estimates of age. Our analyses indicate that modeling survival in daily intervals is too fine a temporal scale when age-at-capture is unknown given the potential inaccuracies among equations used to estimate age of neonates. Instead, weekly survival intervals are more appropriate because most models accurately predicted ages within 1 week of the known age. Variation among results of neonatal-age models on short- and long-term estimates of survival for known-age young emphasizes the importance of selecting an appropriate hoof-growth equation and appropriately defining intervals (i.e., weekly versus daily) for estimating survival.

PLoS ONE↗
USGS2016

Predictors of current and longer-term patterns of abundance of American pikas ( Ochotona princeps ) across a leading-edge protected area

American pikas ( Ochotona princeps ) have been heralded as indicators of montane-mammal response to contemporary climate change. Pikas no longer occupy the driest and lowest-elevation sites in numerous parts of their geographic range. Conversely, pikas have exhibited higher rates of occupancy and persistence in Rocky Mountain and Sierra Nevada montane ‘mainlands’. Research and monitoring efforts on pikas across the western USA have collectively shown the nuance and complexity with which climate will often act on species in diverse topographic and climatic contexts. However, to date no studies have investigated habitat, distribution, and abundance of pikas across hundreds of sites within a remote wilderness area. Additionally, relatively little is known about whether climate acts most strongly on pikas through direct or indirect (e.g., vegetation-mediated) mechanisms. During 2007–2009, we collectively hiked >16,000 km throughout the 410,077-ha Glacier National Park, Montana, USA, in an effort to identify topographic, microrefugial, and vegetative characteristics predictive of pika abundance. We identified 411 apparently pika-suitable habitat patches with binoculars ( in situ ), and surveyed 314 of them for pika signs. Ranking of alternative logistic-regression models based on AIC c scores revealed that short-term pika abundances were positively associated with intermediate elevations, greater cover of mosses, and taller forbs, and decreased each year, for a total decline of 68% during the three-year study; whereas longer-term abundances were associated only with static variables (longitude, elevation, gradient) and were lower on north-facing slopes. Earlier Julian date and time of day of the survey (i.e., midday vs. not) were associated with lower observed pika abundance. We recommend that wildlife monitoring account for this seasonal and diel variation when surveying pikas. Broad-scale information on status and abundance determinants of montane mammals, especially for remote protected areas, is crucial for land and wildlife-resource managers trying to anticipate mammalian responses to climate change.

Montana↗
USGS2016

Space use and habitat selection by resident and transient red wolves ( Canis rufus )

Recovery of large carnivores remains a challenge because complex spatial dynamics that facilitate population persistence are poorly understood. In particular, recovery of the critically endangered red wolf ( Canis rufus ) has been challenging because of its vulnerability to extinction via human-caused mortality and hybridization with coyotes ( Canis latrans ). Therefore, understanding red wolf space use and habitat selection is important to assist recovery because key aspects of wolf ecology such as interspecific competition, foraging, and habitat selection are well-known to influence population dynamics and persistence. During 2009–2011, we used global positioning system (GPS) radio-telemetry to quantify space use and 3 rd -order habitat selection for resident and transient red wolves on the Albemarle Peninsula of eastern North Carolina. The Albemarle Peninsula was a predominantly agricultural landscape in which red wolves maintained spatially stable home ranges that varied between 25 km 2 and 190 km 2 . Conversely, transient red wolves did not maintain home ranges and traversed areas between 122 km 2 and 681 km 2 . Space use by transient red wolves was not spatially stable and exhibited shifting patterns until residency was achieved by individual wolves. Habitat selection was similar between resident and transient red wolves in which agricultural habitats were selected over forested habitats. However, transients showed stronger selection for edges and roads than resident red wolves. Behaviors of transient wolves are rarely reported in studies of space use and habitat selection because of technological limitations to observed extensive space use and because they do not contribute reproductively to populations. Transients in our study comprised displaced red wolves and younger dispersers that competed for limited space and mating opportunities. Therefore, our results suggest that transiency is likely an important life-history strategy for red wolves that facilitates metapopulation dynamics through short- and long-distance movements and eventual replacement of breeding residents lost to mortality.

North Carolina↗
USGS2017

Endemic chronic wasting disease causes mule deer population decline in Wyoming

Chronic wasting disease (CWD) is a fatal transmissible spongiform encephalopathy affecting white-tailed deer ( Odocoileus virginianus ), mule deer ( Odocoileus hemionus ), Rocky Mountain elk ( Cervus elaphus nelsoni ), and moose ( Alces alces shirasi) in North America. In southeastern Wyoming average annual CWD prevalence in mule deer exceeds 20% and appears to contribute to regional population declines. We determined the effect of CWD on mule deer demography using age-specific, female-only, CWD transition matrix models to estimate the population growth rate ( λ ). Mule deer were captured from 2010–2014 in southern Converse County Wyoming, USA. Captured adult (≥ 1.5 years old) deer were tested ante-mortem for CWD using tonsil biopsies and monitored using radio telemetry. Mean annual survival rates of CWD-negative and CWD-positive deer were 0.76 and 0.32, respectively. Pregnancy and fawn recruitment were not observed to be influenced by CWD. We estimated λ = 0.79, indicating an annual population decline of 21% under current CWD prevalence levels. A model derived from the demography of only CWD-negative individuals yielded; λ = 1.00, indicating a stable population if CWD were absent. These findings support CWD as a significant contributor to mule deer population decline. Chronic wasting disease is difficult or impossible to eradicate with current tools, given significant environmental contamination, and at present our best recommendation for control of this disease is to minimize spread to new areas and naïve cervid populations.

Wyoming↗
USGS2018

Dynamic minimum set problem for reserve design: Heuristic solutions for large problems

Conversion of wild habitats to human dominated landscape is a major cause of biodiversity loss. An approach to mitigate the impact of habitat loss consists of designating reserves where habitat is preserved and managed. Determining the most valuable areas to preserve in a landscape is called the reserve design problem. There exists several possible formulations of the reserve design problem, depending on the objectives and the constraints. In this article, we considered the dynamic problem of designing a reserve that contains a desired area of several key habitats. The dynamic case implies that the reserve cannot be designed in one time step, due to budget constraints, and that habitats can be lost before they are reserved, due for example to climate change or human development. We proposed two heuristics strategies that can be used to select sites to reserve each year for large reserve design problem. The first heuristic is a combination of the Marxan and site-ordering algorithms and the second heuristic is an augmented version of the common naive myopic heuristic. We evaluated the strategies on several simulated examples and showed that the augmented greedy heuristic is particularly interesting when some of the habitats to protect are particularly threatened and/or the compactness of the network is accounted for.

PLoS ONE↗
USGS2018

Carnivore hotspots in Peninsular Malaysia and their landscape attributes

Mammalian carnivores play a vital role in ecosystem functioning. However, they are prone to extinction because of low population densities and growth rates, and high levels of persecution or exploitation. In tropical biodiversity hotspots such as Peninsular Malaysia, rapid conversion of natural habitats threatens the persistence of this vulnerable group of animals. Here, we carried out the first comprehensive literature review on 31 carnivore species reported to occur in Peninsular Malaysia and updated their probable distribution. We georeferenced 375 observations of 28 species of carnivore from 89 unique geographic locations using records spanning 1948 to 2014. Using the Getis-Ord Gi*statistic and weighted survey records by IUCN Red List status, we identified hotspots of species that were of conservation concern and built regression models to identify environmental and anthropogenic landscape factors associated with Getis-Ord Gi* z scores. Our analyses identified two carnivore hotspots that were spatially concordant with two of the peninsula’s largest and most contiguous forest complexes, associated with Taman Negara National Park and Royal Belum State Park. A cold spot overlapped with the southwestern region of the Peninsula, reflecting the disappearance of carnivores with higher conservation rankings from increasingly fragmented natural habitats. Getis-Ord Gi* z scores were negatively associated with elevation, and positively associated with the proportion of natural land cover and distance from the capital city. Malaysia contains some of the world’s most diverse carnivore assemblages, but recent rates of forest loss are some of the highest in the world. Reducing poaching and maintaining large, contiguous tracts of lowland forests will be crucial, not only for the persistence of threatened carnivores, but for many mammalian species in general.

PLoS ONE↗
USGS2019

Modeling effects of crop production, energy development and conservation-grassland loss on avian habitat

Birds are essential components of most ecosystems and provide many services valued by society. However, many populations have undergone striking declines as their habitats have been lost or degraded by human activities. Terrestrial grasslands are vital habitat for birds in the North American Prairie Pothole Region (PPR), but grassland conversion and fragmentation from agriculture and energy-production activities have destroyed or degraded millions of hectares. Conservation grasslands can provide alternate habitat. In the United States, the Conservation Reserve Program (CRP) is the largest program maintaining conservation grasslands on agricultural lands, but conservation grasslands in the PPR have declined by over 1 million ha since the program’s zenith in 2007. We used an ecosystem-services model (InVEST) parameterized for the PPR to quantify grassland-bird habitat remaining in 2014 and to assess the degradation status of the remaining grassland-bird habitat as influenced by crop and energy (i.e., oil, natural gas, and wind) production. We compared our resultant habitat-quality ratings to grassland-bird abundance data from the North American Breeding Bird Survey to confirm that ratings were related to grassland-bird abundance. Of the grassland-bird habitat remaining in 2014, about 19% was degraded by crop production that occurred within 0.1 km of grassland habitats, whereas energy production degraded an additional 16%. We further quantified the changes in availability of grassland-bird habitat under various land-cover scenarios representing incremental losses (10%, 25%, 50%, 75%, and 100%) of CRP grasslands from 2014 levels. Our model identified 1 million ha (9%) of remaining grassland-bird habitat in the PPR that would be lost or degraded if all CRP conservation grasslands were returned to crop production. Grassland regions world-wide face similar challenges in maintaining avian habitat in the face of increasing commodity and energy production to sate the food and energy needs of a growing world population. Identifying ways to model the impacts of the tradeoff between food and energy production and wildlife production is an important step in creating solutions.

Prairie Pothole Region↗
USGS2020

Combining genetic and demographic monitoring better informs conservation of an endangered urban snake

Conversion and fragmentation of wildlife habitat often leads to smaller and isolated populations and can reduce a species’ ability to disperse across the landscape. As a consequence, genetic drift can quickly lower genetic variation and increase vulnerability to extirpation. For species of conservation concern, quantification of population size and connectivity can clarify the influence of genetic drift in local populations and provides important information for conservation management and recovery strategies. Here, we used genome-wide single nucleotide polymorphism (SNP) data and capture-mark-recapture methods to evaluate the genetic diversity and demography within seven focal sites of the endangered San Francisco gartersnake ( Thamnophis sirtalis tetrataenia ), a species affected by alteration and isolation of wetland habitats throughout its distribution. The primary goals were to determine the population structure and degree of genetic isolation among T . s . tetrataenia populations and estimate effective size and population abundance within sites to better understand the present and future importance of genetic drift. We also used temporally sampled datasets to examine the magnitude of genetic change over time. We found moderate population genetic structure throughout the San Francisco Peninsula that partitions sites into northern and southern regional clusters. Point estimates of both effective size and population abundance were generally small (≤ 100) for a majority of the sites, and estimates were particularly low in the northern populations. Genetic analyses of temporal datasets indicated an increase in genetic differentiation, especially for the most geographically isolated sites, and decreased genetic diversity over time in at least one site (Pacifica). Our results suggest that drift-mediated processes as a function of small population size and reduced connectivity from neighboring populations may decrease diversity and increase differentiation. Improving genetic diversity and connectivity among T . s . tetrataenia populations could promote persistence of this endangered snake.

California↗
USGS2022

Identifying monitoring information needs that support the management of fish in large rivers

Management actions intended to benefit fish in large rivers can directly or indirectly affect multiple ecosystem components. Without consideration of the effects of management on non-target ecosystem components, unintended consequences may limit management efficacy. Monitoring can help clarify the effects of management actions, including on non-target ecosystem components, but only if data are collected to characterize key ecosystem processes that could affect the outcome. Scientists from across the U.S. convened to develop a conceptual model that would help identify monitoring information needed to better understand how natural and anthropogenic factors affect large river fishes. We applied the conceptual model to case studies in four large U.S. rivers. The application of the conceptual model indicates the model is flexible and relevant to large rivers in different geographic settings and with different management challenges. By visualizing how natural and anthropogenic drivers directly or indirectly affect cascading ecosystem tiers, our model identified critical information gaps and uncertainties that, if resolved, could inform how to best meet management objectives. Despite large differences in the physical and ecological contexts of the river systems, the case studies also demonstrated substantial commonalities in the data needed to better understand how stressors affect fish in these systems. For example, in most systems information on river discharge and water temperature were needed and available. Conversely, information regarding trophic relationships and the habitat requirements of larval fishes were generally lacking. This result suggests that there is a need to better understand a set of common factors across large-river systems. We provide a stepwise procedure to facilitate the application of our conceptual model to other river systems and management goals.

Environmental Management↗
USGS2022

Diagnostic testing of chronic wasting disease in white-tailed deer (Odocoileus virginianus) by RT-QuIC using multiple tissues

Chronic wasting disease (CWD) is a fatal prion disease affecting cervids (deer, elk, moose). Current methods to monitor individual disease state include highly invasive antemortem rectal biopsy or postmortem brain biopsy. Efficient, sensitive, and selective antemortem and postmortem testing of populations would increase knowledge of the dynamics of CWD epizootics as well as provide a means to track CWD progression into previously unaffected areas. Here, we analyzed the presence of CWD prions in skin samples from two easily accessed locations (ear and belly) from 30 deceased white-tailed deer ( Odocoileus viginianus ). The skin samples were enzymatically digested and analyzed by real-time quaking-induced conversion (RT-QuIC). The diagnostic sensitivity of the ear and belly skin samples were both 95%, and the diagnostic specificity of the ear and belly skin were both 100%. Additionally, the location of the skin biopsy on the ear does not affect specificity or sensitivity. These results demonstrate the efficacy of CWD diagnosis with skin biopsies using RT-QuIC. This method could be useful for large scale antemortem population testing.

Wisconsin↗