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SPECtrum Processing Routines User's Manual Version 3 (program SPECPR)

Introduction The SPECtrum Processing Routines (SPECPR) is a large-scale interactive program for general one-dimensional array processing and optimized for reflectance spectroscopy data and analysis. The program processes one-dimensional arrays up to 4852 data points and the operations include addition, subtraction, multiplication, division, trigonometric functions, logarithmic and exponential functions, and many more specialized routines. The Specpr user interface is a menu driven, character command system with all user input entered as ascii characters to the program. User commands are thoroughly checked for the context in which they will be used. This provides for essentially all user input mistakes to be caught and appropriate error messages to be issued. The user interface also allows for command aliasing, variable substitutions, command history and batch command processing to occur at any point in the program. The user can also control his or her own variables, increment and decrement them, and monitor certain internal variables. This flexibility allows for sophisticated programming, e.g. from specific computations, to management of a database. All arrays are treated as one dimensional lists of numbers, each with an appropriate header for identification and history. Any array can be plotted versus another array, and each axis labeled appropriately. For example, you may plot a reflectance spectrum versus wavelength or wavelength versus reflectance. The array type is simply a label, so data like temperature versus time can be treated just as easily as a reflectance spectrum. Some routines are specific to certain purposes, however. For example, the Planck black body generator is specific to intensity versus wavelength, whereas a smoothing routine could operate equally on reflectance versus wavelength or temperature versus time. Each array element can have an error bar associated with it and errors are propagated through all appropriate routines. Data points can be marked deleted and deleted points are tracked appropriately. These features allow the program to be effectively used on real world data. This philosophy has resulted in a flexible system for which a user can manipulate data arrays efficiently. The program was designed for analysis of laboratory, field, telescopic, and spacecraft spectroscopic data, and although general in nature, there are biases built in. For example, horizontal axis labels default to wavelength in micrometers, but the defaults can be changed. Because of the orientation in Specpr to process planetary and terrestrial data, and the need to access such data, Specpr has been extended to have access to non-Specpr default file types. In particular, Specpr can "skewer" an 3-dimensional (3D) data file along any of the three axes. Further, block skewers can be done with the standard deviation of the mean computed for each channel in the block. Currently, Specpr can access any of the standard file types common in the terrestrial and planetary remote sensing communities. Details on 3D file I/O are given in Chapter 6. Specpr has multiple record types available within a single Specpr data file. Currently defined record types are data and text. In a data record, a standard one-dimensional array is held, along with its header information. The header information includes a title, history, dates and time of data acquisition and when the data were last processed, the user who processed the data, information typical of a spectrum like temperature and viewing geometry, as well as pointers to wavelengths, resolution, and text. If a spectrum is more than 256 channels in length, then the data gets put in succeeding records in the file, and the following records are continuation records. The second record type is the text, where a title and a block of text (up to 19 kbytes) can be stored. This record type is typically used for a description of samples, experiments, instruments, or data processing for a particular data set. It could also store the actual commands used to create a spectrum. The commands for a complicated plot for a publication might be stored in a text record. That way, you can easily regenerate the plot, or even write the commands to a non-Specpr file, modify them with any editor and re-execute them. The file types, text and command processing, combined with the math and special functions, provide for very powerful and general analysis tool. These facilities also provide the framework for database management.

Open-File Report↗

Voluminous volcanism on early mars revealed in valles marineris

The relative rates and importance of impact cratering, volcanism, erosion, and the deposition of sediments to the early geological history of Mars are poorly known. That history is recorded in the upper crust of the planet, which is best exposed along the 4,000km-long canyon system called Valles Marineris. Previous studies of the stratigraphy of this region have assumed that it consists of megabreccia and fractured bedrock resulting from impacts, overlain by or interbedded with relatively thin layers of lava, and with the layering restricted to the uppermost level of the crust. Here we report new high-resolution images that reveal ubiquitous horizontal layering to depths of at least 8 km in the canyons. Megabreccia should be only coarsely layered and fractured bedrock should be unlayered, so these observations indicate that volcanic or sedimentary processes were much more important in early martian history than previously believed. Morphological and compositional data suggest that the layers were formed mainly by volcanic flood lavas. Mars was therefore probably very volcanically active during at least the first billion years and after the period when the heaviest impact bombardment had ended.

Nature↗

Cryovolcanic rates on Ceres revealed by topography

Cryovolcanism, defined here as the extrusion of icy material from depth, may be an important planetary phenomenon in shaping the surfaces of many worlds in the outer Solar System and revealing their thermal histories 1 , 2 , 3 . However, the physics, chemistry and ubiquity of this geologic process remain poorly understood, especially in comparison to the better-studied silicate volcanism on the terrestrial planets. Ceres is the only plausibly cryovolcanic world to be orbited by a spacecraft up to now, making it the best opportunity to test the importance of cryovolcanism on bodies in the outer Solar System and compare its effects to silicate volcanism on terrestrial planets. Here, we analyse images from NASA’s Dawn mission 4 and use the finite element method to show that Ceres has experienced cryovolcanism throughout its geologic history, with an average cryomagma extrusion rate of ~10 4 m 3 yr −1 . This result shows that volcanic phenomena are important on Ceres, but orders of magnitude less so than on the terrestrial planets.

Nature Astronomy↗

Nature's refineries — Metals and metalloids in arc volcanoes

Chemical data for fumaroles and for atmospheric gas and ash plumes from active arc volcanoes provide glimpses of the rates of release of metal and metalloids, such as Tl and Cd, from shallow and mid-crust magmas. Data from copper deposits formed in ancient volcanoes at depths of up to about 1500 m in the fractures below paleo-fumaroles, and at around 2000–4000 m in association with sub-volcanic intrusions (porphyry copper deposits) provide evidence of sub-surface deposition of Cu–Au–Ag–Mo and a range of other minor elements including Te, Se, As and Sb. These deposits, or ‘sinks’, of metals consistently record sustained histories of magmatic gas streaming through volcanic systems interspersed by continuing intrusive and eruptive activity. Here we integrate data from ancient and modern volcanic systems and show that the fluxes of metals and metalloids are controlled by a) the maintenance of fracture permeability in the stressed crust below volcanoes and b) the chemical processes that are triggered as magmatic gas, initially undersaturated with metals and metalloids, expands from lithostatic to very low pressure conditions through fracture arrays. The recognition of gas streaming may also account for the phenomenon of ‘excess degassing’, and defines an integral, but generally understated, component of active volcanic systems – a volcanic gas core – that is likely to be integral to the progression of eruptions to Plinean state. Destabilization of solvated molecular metal and metalloid species in magmatic gas mixtures and changes in their redox state are triggered, as it expands to the surface by abrupt pressure drops, or throttles' in the fracture array that guides expansion to the surface. The electronically harder, low electronegativity metals, such as copper and iron, deposit rapidly in response to expansion followed more slowly by arsenic with antimony as sulfosalts. Heavy, large radius, softer elements such as bismuth, lead, and thallium along with cadmium are strongly fractionated along the way, eventually venting their excess along with SO 2 , CO 2 , and other components of the carrier gas, into the atmosphere. These elements, many of which are toxic, may also be dispersed by mixing with groundwater in the permeable crust below volcanoes and generate potential health risks due to Hg, As, and Se contamination of drinking water resources.

Earth-Science Reviews↗

Sexual selection affects local extinction and turnover in bird communities

Predicting extinction risks has become a central goal for conservation and evolutionary biologists interested in population and community dynamics. Several factors have been put forward to explain risks of extinction, including ecological and life history characteristics of individuals. For instance, factors that affect the balance between natality and mortality can have profound effects on population persistence. Sexual selection has been identified as one such factor. Populations under strong sexual selection experience a number of costs ranging from increased predation and parasitism to enhanced sensitivity to environmental and demographic stochasticity. These findings have led to the prediction that local extinction rates should be higher for species/populations with intense sexual selection. We tested this prediction by analyzing the dynamics of natural bird communities at a continental scale over a period of 21 years (1975-1996), using relevant statistical tools. In agreement with the theoretical prediction, we found that sexual selection increased risks of local extinction (dichromatic birds had on average a 23% higher local extinction rate than monochromatic species). However, despite higher local extinction probabilities, the number of dichromatic species did not decrease over the period considered in this study. This pattern was caused by higher local turnover rates of dichromatic species, resulting in relatively stable communities for both groups of species. Our results suggest that these communities function as metacommunities, with frequent local extinctions followed by colonization. Anthropogenic factors impeding dispersal might therefore have a significant impact on the global persistence of sexually selected species.

Proceedings of the National Academy of Sciences↗

Fungal endophytes: diversity and functional roles

All plants in natural ecosystems appear to be symbiotic with fungal endophytes. This highly diverse group of fungi can have profound impacts on plant communities through increasing fitness by conferring abiotic and biotic stress tolerance, increasing biomass and decreasing water consumption, or decreasing fitness by altering resource allocation. Despite more than 100 yr of research resulting in thousands of journal articles, the ecological significance of these fungi remains poorly characterized. Historically, two endophytic groups (clavicipitaceous (C) and nonclavicipitaceous (NC)) have been discriminated based on phylogeny and life history traits. Here, we show that NC-endophytes represent three distinct functional groups based on host colonization and transmission, in planta biodiversity and fitness benefits conferred to hosts. Using this framework, we contrast the life histories, interactions with hosts and potential roles in plant ecophysiology of C- and NC-endophytes, and highlight several key questions for future work in endophyte biology.

New Phytologist↗

Geologic studies in Alaska by the U.S. Geological Survey, 1999

The collection of nine papers that follow continue the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. The series presents new and sometimes preliminary findings that are of interest to earth scientists in academia, government, and industry; to land and resource managers; and to the general public. Reports presented in Geologic Studies in Alaska cover a broad spectrum of topics from various parts of the State (fig. 1), serving to emphasize the diversity of USGS efforts to meet the Nation's needs for earth-science information in Alaska. The papers in this volume are organized under the topics: Hazards, Geologic Framework, Environment and Climate, and Resources. This organization is intended to reflect the scope and objectives of USGS geologic programs currently active in Alaska. The two Hazards studies discuss volcano-related topics in the seismically active southcentral Alaska region. The first paper revisits the eruptive events of Redoubt Volcano that occurred more than a decade ago and the subsequent development of the Alaska Volcano Observatory (AVO). This treatise documents the historic impact of this eruption and briefly summarizes the state of our knowledge of the other Cook Inlet, Alaska Peninsula, and Aleutian Island volcanoes. Finally, it discusses the recent role that AVO has had in seismic station installation and hazard assessment at volcanically active sites throughout the world. The second paper discusses the eruptive history of Snowy Mountain in the upper Alaska Peninsula. Because subsets of its 25-30 lava flows erupted as packages in short episodes, calculation of the volcano's lifetime average volumetric eruption rate is problematic. A portion of the cone was hydrothermally weakened and collapsed in the late Holocene producing a 22-km2 debris avalanche. Geologic Framework studies provide background information that is the scientific basis for present and future earth science investigations. The first paper compares and contrasts the Insular-Intermontane suture zone (IISZ) of southeast Alaska with the Adria-Europe suture zone (AESZ) of Switzerland and Hungary. The study develops the hypothesis that the zones have distinct differences as well as similarities and neither is a simple lithotectonic terrane boundary. The second paper discusses the relation among volcanic, glacial, and tectonic activity in the Cold Bay and False Pass 1 :250,000-scale quadrangles on the Alaska Peninsula. During Pleistocene time, continental-shelf glaciations and two massive volcanic centers were the dominant controls over landscape development. The third paper gives detailed geologic information for Paleozoic rocks within the Taylor Mountains D-1 quadrangle portion of the Holitna Lowland of southwestern Alaska. Because of the excellent preservation of megafossils, these Silurian and Ordovician strata lend themselves to detailed statigraphic investigations. Further, low thermal alteration indices of this area have made them a potential target of petroleum exploration. The final report in this section discusses the development of a new spectral enhancement approach for interpreting Multispectral Scanner (MSS) and Thematic Mapper (TM) satellite images. This technique enhances the use of remote sensing data in identifying geologic units in areas that have been poorly investigated. This study used this technique to better define the distribution of a JMtu (mafic, ultramafic, and sedimentary) unit and a PzZrqs (pelitic and quartzitic schist) unit. Environment and climate studies are the emphasis of two papers. One presents the first radiocarbon-dated postglacial vegetation history of the Kenai Mountains of southcentral Alaska. This reconstruction is the result of the analysis of pollen assemblages and peat from sediments collected in Tern Lake and presents a minimum age for deglaciation of these interior valleys at 9,31 0±200 yr B .P. Current vegetation, however, developed within the past ca. 2,500 years. A second study discusses the cycling of arsenic and cadmium in sub-arctic boreal forest ecosystems typical of interior Alaska and defines the importance of various natural (geogenic) sources. The transport and uptake into vegetation of these elements from soils developed from loess as well as soils developed from the major rock units is presented. The bioaccumulation of cadmium in willow (Salix sp.) and its potential consequence to the health of browsing animals is discussed. Papers related to resource issues comprise the topic of the final report. This paper presents a brief statistical summary of the geochemistry of rock samples collected in the east-central portion of the Eagle 1 :250,000-scale quadrangle. This study helps define the rock unit source of both resource- and environmental-based chemical elements of interest in the Fortymile mining district. Two bibliographies at the end of the volume list reports covering Alaska earth science topics in USGS publications during 1999 and reports about Alaska by USGS authors in non-USGS publications during the same period.

Alaska↗

Expanding the role of reactive transport models in critical zone processes

Models test our understanding of processes and can reach beyond the spatial and temporal scales of measurements. Multi-component Reactive Transport Models (RTMs), initially developed more than three decades ago, have been used extensively to explore the interactions of geothermal, hydrologic, geochemical, and geobiological processes in subsurface systems. Driven by extensive data sets now available from intensive measurement efforts, there is a pressing need to couple RTMs with other community models to explore non-linear interactions among the atmosphere, hydrosphere, biosphere, and geosphere. Here we briefly review the history of RTM development, summarize the current state of RTM approaches, and identify new research directions, opportunities, and infrastructure needs to broaden the use of RTMs. In particular, we envision the expanded use of RTMs in advancing process understanding in the Critical Zone, the veneer of the Earth that extends from the top of vegetation to the bottom of groundwater. We argue that, although parsimonious models are essential at larger scales, process-based models offer tools to explore the highly nonlinear coupling that characterizes natural systems. We present seven testable hypotheses that emphasize the unique capabilities of process-based RTMs for (1) elucidating chemical weathering and its physical and biogeochemical drivers; (2) understanding the interactions among roots, micro-organisms, carbon, water, and minerals in the rhizosphere; (3) assessing the effects of heterogeneity across spatial and temporal scales; and (4) integrating the vast quantity of novel data, including “omics” data (genomics, transcriptomics, proteomics, metabolomics), elemental concentration and speciation data, and isotope data into our understanding of complex earth surface systems. With strong support from data-driven sciences, we are now in an exciting era where integration of RTM framework into other community models will facilitate process understanding across disciplines and across scales.

Earth-Science Reviews↗

Groundwater formation of martian valleys

The martian surface shows large outflow channels, widely accepted as having been formed by gigantic floods that could have occurred under climatic conditions like those seen today. Also present are branching valley networks that commonly have tributaries. These valleys are much smaller than the outflow channels and their origins and ages have been controversial. For example, they might have formed through slow erosion by water running across the surface, either early or late in Mars' history, possibly protected from harsh conditions by ice cover. Alternatively, they might have formed through groundwater or ground-ice processes that undermine the surface and cause collapse, again either early or late in Mars' history. Long-duration surface runoff would imply climatic conditions quite different from the present environment. Here we present high-resolution images of martian valleys that support the view that ground water played an important role in their formation, although we are unable as yet to establish when this occurred.

Nature↗

Estimating drivers and identifying uncertainties in smallmouth bass population dynamics in an invaded river network

Smallmouth bass ( Micropterus dolomieu ) is an important recreational sportfish and destructive non-native species when introduced into freshwater habitats. There is therefore a need to understand the drivers of, and uncertainties in, smallmouth bass population dynamics for various management objectives. We combined long-term smallmouth bass catch-effort and early life history data from a non-native population in the Green River sub-basin of the upper Colorado River to develop a demographic model that links interannual variability in environmental conditions to recruitment in three river reaches. We used the model to quantify how hydrology, river temperature, and exploitation drive smallmouth bass population dynamics. Early life stages were influenced by timing of hatching and discharge. Dispersal of age-0 fish and density-dependent dynamics were identified as primary sources of uncertainty. Determining the true nature of density-dependent dynamics is important, as the impact of exploitation-based management actions is dependent on the strengths of any density-dependent feedbacks. Our model provides a framework to predict smallmouth bass population responses to future climate conditions, reservoir operations, and exploitation levels.

Utah↗

A burning story: The role of fire in the history of life

Ecologists, biogeographers, and paleobotanists have long thought that climate and soils controlled the distribution of ecosystems, with the role of fire getting only limited appreciation. Here we review evidence from different disciplines demonstrating that wildfire appeared concomitant with the origin of terrestrial plants and played an important role throughout the history of life. The importance of fire has waxed and waned in association with changes in climate and paleoatmospheric conditions. Well before the emergence of humans on Earth, fire played a key role in the origins of plant adaptations as well as in the distribution of ecosystems. Humans initiated a new stage in ecosystem fire, using it to make the Earth more suited to their lifestyle. However, as human populations have expanded their use of fire, their actions have come to dominate some ecosystems and change natural processes in ways that threaten the sustainability of some landscapes. ?? 2009 by American Institute of Biological Sciences.

BioScience↗

Volcano Hazards Assessment for Medicine Lake Volcano, Northern California

Medicine Lake volcano (MLV) is a very large shield-shaped volcano located in northern California where it forms part of the southern Cascade Range of volcanoes. It has erupted hundreds of times during its half-million-year history, including nine times during the past 5,200 years, most recently 950 years ago. This record represents one of the highest eruptive frequencies among Cascade volcanoes and includes a wide variety of different types of lava flows and at least two explosive eruptions that produced widespread fallout. Compared to those of a typical Cascade stratovolcano, eruptive vents at MLV are widely distributed, extending 55 km north-south and 40 km east-west. The total area covered by MLV lavas is >2,000 km2, about 10 times the area of Mount St. Helens, Washington. Judging from its long eruptive history and its frequent eruptions in recent geologic time, MLV will erupt again. Although the probability of an eruption is very small in the next year (one chance in 3,600), the consequences of some types of possible eruptions could be severe. Furthermore, the documented episodic behavior of the volcano indicates that once it becomes active, the volcano could continue to erupt for decades, or even erupt intermittently for centuries, and very likely from multiple vents scattered across the edifice. Owing to its frequent eruptions, explosive nature, and proximity to regional infrastructure, MLV has been designated a 'high threat volcano' by the U.S. Geological Survey (USGS) National Volcano Early Warning System assessment. Volcanic eruptions are typically preceded by seismic activity, but with only two seismometers located high on the volcano and no other USGS monitoring equipment in place, MLV is at present among the most poorly monitored Cascade volcanoes.

Scientific Investigations Report↗

Discovery of the invasive Mayan Cichlid fish "Cichlasoma" urophthalmus (Günther 1862) in Thailand, with comments on other introductions and potential impacts

We report on the occurrence and possible establishment of a non-native cichlid fish in a brackish-water system in the lower Chao Phraya River delta region, Thailand. Although, the possibility of some degree of introgressive hybridization can not be ruled out, Thailand specimens agree best with Mayan Cichlid “Cichlasoma” urophthalmus (Günther 1862). Our collections represent the first records of this New World, highly-invasive, euryhaline fish from Thailand and coincides with recent collections from Singapore. Positive identification of specimens as “C.” urophthalmus requires caution due to the diversity of the Cichlidae (>1,300 species), widespread introduction of many family members, variation within species, extensive interspecific overlap in characters, and proliferation of artificial cichlid hybrids (e.g., Flowerhorns). We first became aware of the Thailand population in 2005 when “C.” urophthalmus began appearing in the catches of local fishermen. We visited the site in November 2006 and obtained and examined voucher specimens. The abundance and wide size range of juveniles and adults in local ponds and an adjacent canal is evidence of natural reproduction. Because water bodies throughout the Chao Phraya delta are interconnected and subject to flooding, it is likely that “C.” urophthalmus is already established and is dispersing, but surveys and monitoring are needed to determine their exact geographic range. The Thailand population is compared to “C.” urophthalmus introduced into Florida (USA). Based on what is known about Florida “C.” urophthalmus , it is predicted that this cichlid will further invade coastal and inland waters in Thailand and elsewhere in Southeast Asia. This cichlid has a long history in the aquarium trade in Europe. However, there are no records from the wild in European waters and, because of the colder climate, the possibility of establishment in that region is relatively low.

Chao Phraya River Delta↗

Paleoclimate Records: Providing context and understanding of current Arctic change

At present, the Arctic Ocean is experiencing changes in ocean surface temperature and sea ice extent that are unprecedented in the era of satellite observations, which extend from the 1980s to the present (see sections 5c,d). To provide context for current changes, scientists turn to paleoclimate records to document and study anthropogenic influence and natural decadal and multidecadal climate variability in the Arctic system. Paleoceanographic records extend limited Arctic instrumental measurements back in time and are central to improving our understanding of climate dynamics and the predictive capability of climate models. By comparing paleoceanographic records with modern observations, scientists can place the rates and magnitudes of modern Arctic change in the context of those inferred from the geological record. Over geological time, paleoceanographic reconstructions using, for instance, marine sediment cores indicate that the Arctic has experienced huge sea ice fluctuations. These fluctuations range from nearly completely ice-free to totally ice-covered conditions. The appearance of ice-rafted debris and sea ice-dependent diatoms in Arctic marine sediments indicate that the first Arctic sea ice formed approxi-mately 47 million years ago (St. John 2008; Stickley et al. 2009; Fig. SB5.1), coincident with an interval of declining atmospheric carbon dioxide (CO2) concentration, global climate cooling, and expansion of Earths cryosphere during the middle Eocene. The development of year-round (i.e., perennial) sea ice in the central Arctic Ocean, similar to conditions that exist today, is evident in sediment records as early as 1418 million years ago (Darby 2008). These records suggest that transitions in sea ice cover occur over many millennia and often vary in concert with the waxing and waning of circum-Arctic land ice sheets, ice shelves, and long-term fluctuations in ocean and atmospheric temperature and atmospheric CO2 concentrations (Stein et al. 2012; Jakobsson et al. 2014). Over shorter time scales, shallow sediment records from Arctic Ocean continental shelves allow more detailed, higher-resolution (hundreds of years resolution) reconstructions of sea ice history extending through the Holocene (11 700 years ago to present), the most recent interglacial period. A notable feature of these records is an early Holocene sea ice minimum, corresponding to a thermal maximum (warm) period from 11 000 to 5000 years ago, when the Arctic may have been warmer and had less summertime sea ice than today (Kaufman et al. 2004). However, it is not clear that the Arctic was ice-free at any point during the Holocene (Polyak et al. 2010). High-resolution paleosea ice records from the western Arctic in the Chukchi and East Siberian Seas indicate that sea ice concentrations increased through the Holocene in concert with decreasing summer solar insolation (sunlight). Sea ice extent in this region also varied in response to the volume of Pacific water delivered via the Bering Strait into the Arctic Basin (Stein et al. 2017; Polyak et al. 2016). Records from the Fram Strait (Mller et al. 2012), Laptev Sea (Hrner et al. 2016), and Canadian Arctic Archipelago (Vare et al. 2009) also indicate a similar long-term expansion of sea ice and suggest sea ice extent in these regions is modulated by the varying influx of warm Atlantic water into the Arctic Basin (e.g., Werner et al. 2013). Taken together, available records support a circum-Arctic sea ice expansion during the late Holocene. A notably high-resolution summer sea ice history (<5-year resolution) has been established for the last 1450 years using a network of terrestrial records (tree ring , lake sediment, and ice core records) located around the margins of the Arctic Ocean (Kinnard et al. 2011). Results summarized in Fig. SB5.2 indicate a pronounced decline in summer sea ice extent beginning in the 20th century, with exceptionally low ice extent recorded since the mid-1990s, consistent with the satellite record (see section 5d). While several episodes of reduced and expanded sea ice extent occur in association with climate anomalies such as the Medieval Climate Warm Period (AD 8001300) and the Little Ice Age (AD 14501850), the magnitude and pace of the modern decline in sea ice is outside of the range of natural variability and unprecedented in the 1450-year reconstruction (Kinnard et al. 2011). A radiocarbon-dated driftwood record of the Ellesmere ice shelf in the Canadian High Arctic, the oldest landfast ice in the Northern Hemisphere, also demonstrates a substantial reduction in ice extents over the 20th century (England et al. 2017). A supporting sediment record indicates that inflowing Atlantic water in Fram Strait has warmed by 2C since 1900, driving break up and melt of sea ice (Spielhagen et al. 2011). Complementary mooring and satellite observations show the Atlantification of the eastern Arctic due to enhanced inflow of warm saline water through Fram Strait (Nilsen et al. 2016) and nutrient-rich Pacific water via the Bering has increased by more than 50% (Woodgate et al. 2012), further driving sea ice melt and warming seas. Similar high-resolution proxy records from Arctic regions also indicate that the modern rate of increasing annual surface air temperatures has not been observed over at least the last 2000 years (McKay and Kaufman 2014). Scientists conclude that broad-scale sea ice variations recorded in the paleo record were dominantly driven by changes in basin-scale changes in atmospheric circulation patterns, fluctuations in air temperature, strength of incoming solar radiation, and changes in the inflow of warm water via Pacific and Atlantic inflows (Polyak et al. 2010). There is general consensus that ice-free Arctic summers are likely before the end of the 21st century (e.g., Stroeve et al. 2007; Massonnet et al. 2012), while some climate model projections suggest ice-free Arctic summers as early as 2030 (Wang and Overland 2009). Paleoclimate studies and observational time series attribute the decline in sea ice extent and thickness over the last decade to both enhanced greenhouse warming and natural climate variability. While understanding the interplay of these factors is critical for future projections of Arctic sea ice and ecosystems, most observational time series records cover only a few decades. This highlights the need for additional paleoceanographic reconstructions across multiple spatial and temporal domains to better understand the drivers and implications of present and future Arctic Ocean change.

Bulletin American Meteorological Society↗

Life history plasticity does not confer resilience to environmental change in the mole salamander (Ambystoma talpoideum)

Plasticity in life history strategies can be advantageous for species that occupy spatially or temporally variable environments. We examined how phenotypic plasticity influences responses of the mole salamander, Ambystoma talpoideum, to disturbance events at the St. Marks National Wildlife Refuge (SMNWR), FL, USA from 2009 to 2014. We observed periods of extensive drought early in the study, in contrast to high rainfall and expansive flooding events in later years. Flooding facilitated colonization of predatory fishes to isolated wetlands across the refuge. We employed multistate occupancy models to determine how this natural experiment influenced the occurrence of aquatic larvae and paedomorphic adults and what implications this may have for the population. We found that, in terms of occurrence, responses to environmental variation differed between larvae and paedomorphs, but plasticity (i.e. the ability to metamorphose rather than remain in aquatic environment) was not sufficient to buffer populations from declining as a result of environmental perturbations. Drought and fish presence negatively influenced occurrence dynamics of larval and paedomorphic mole salamanders and, consequently, contributed to observed short-term declines of this species. Overall occurrence of larval salamanders decreased from 0.611 in 2009 to 0.075 in 2014 and paedomorph occurrence decreased from 0.311 in 2009 to 0.121 in 2014. Although variation in selection pressures has likely maintained this polyphenism previously, our results suggest that continued changes in environmental variability and the persistence of fish in isolated wetlands could lead to a loss of paedomorphosis in the SMNWR population and, ultimately, impact regional persistence in the future.

Oecologia↗

Telemetry-based mortality estimates of juvenile spot in two North Carolina estuarine creeks

We estimated natural mortality rates ( M ) of age-1 Spot Leiostomus xanthurus by using a sonic telemetry approach. Sonic transmitters were surgically implanted into a total of 123 age-1 Spot in two North Carolina estuarine creeks during spring 2009 and 2010, and the fish were monitored by using a stationary acoustic receiver array and manual tracking. Fates of telemetered Spot were inferred based on telemetry information from estimated locations and swimming speeds. Potential competitors of age-1 Spot were assessed through simultaneous otter trawl sampling, while potential predators of Spot were collected using gill nets and trammel nets. The number of inferred natural mortalities was zero in 2009 (based on 29 telemetered Spot at risk) and four in 2010 (based on 52 fish at risk), with fish being at risk for up to about 70 d each year. Catches of potential competitors or predators did not differ between years, and age-1 Spot were not found in analyzed stomach contents of potential predators. Our estimated 30-d M of 0.03 (95% credible interval = 0.01&ndash;0.07) was lower than that predicted from weight-based ( M = 0.07) and life-history-based ( M = 0.06&ndash;0.36) estimates. Our field-based estimate of M for age-1 Spot in this estuarine system can assist in the assessment and management of Spot by allowing a direct comparison with M -values predicted from fish size or life history characteristics. The field telemetry and statistical analysis techniques developed here provide guidance for future telemetry studies of relatively small fish in open, dynamic habitat systems, as they highlight strengths and weaknesses of using a telemetry approach to estimate M .

North Carolina↗

The last interglacial period on the Pacific Coast of North America: Timing and paleoclimate

New, high-precision U-series ages of solitary corals ( Balanophyllia elegans ) coupled with molluscan faunal data from marine terraces on the Pacific Coast of North America yield information about the timing and warmth of the last interglacial sea-level highstand. Balanophyllia elegans takes up U in isotopic equilibrium with seawater during growth and shortly after death. Corals from the second terrace on San Clemente Island (offshore southern California), the third terrace on Punta Banda (on the Pacific Coast of northern Baja California), and the Discovery Point Formation on Isla de Guadalupe (in the Pacific Ocean offshore Baja California) date to the peak of the last interglacial period and have U-series ages ranging from ca. 123 to 114 ka. The first terrace on Punta Banda has corals with ages ranging from ca. 83 to 80 ka, which corresponds to a sea-level highstand formed in the late last interglacial period. U-series analyses of corals from the Cayucos terrace (central California) and the Nestor terrace at Point Loma (southern California) show that these fossils have evidence of open-system history, similar to what has been reported by other workers for the same localities. Nevertheless, a model of continuous, secondary U and Th uptake shows that two ages of corals are likely present at these localities, representing the ca. 105 and ca. 120 ka sea-level highstands reported elsewhere. U-series ages of last interglacial corals from the Pacific Coast overlap with, but are on average younger than the ages of corals from Barbados, the Bahamas, and Hawaii. This age difference is explained by the nature of the geomorphic response to sea-level change: fringing or barrier reefs on low-latitude coastlines have an accretionary growth style that keeps pace with rising sea level, whether on a tectonically rising or stable coastline. In contrast, midlatitude, high-energy coastlines are sites of platform cutting during the early part of a sea-level high stand and terrace scouring and concomitant sediment and fossil deposition as sea level starts to recede. The youngest ages of corals from the Pacific Coast suggest that sea level was still relatively high at ca. 116 ka, which is not in agreement with other estimates of relatively large global ice volume at that time. Reliably dated, ca. 120 ka marine-terrace deposits on the Pacific Coast have fossil mollusks that indicate water temperatures as warm or warmer than at present. In contrast, ca. 80 ka marine deposits reported here and elsewhere have fossil mollusks indicating cooler-than-modern water temperatures. The presence of both ca. 105 ka and ca. 120 ka corals on the Nestor and Cayucos terraces explains a previously enigmatic mixture of warm-water and cool-water mollusks. At ca. 105 ka, a relatively high sea level with cool waters may have "captured" the terrace formed during the 120 ka sea-level highstand, in areas of low uplift rate. The inference of cooler-than-modern waters off the Pacific Coast of North America at ca. 80 ka and ca. 105 ka, based on marine-terrace faunas, does not agree with estimates of sea-surface temperatures derived from alkenone studies in the Santa Barbara Basin. However, cooler water temperatures at these times are in agreement with paleo-temperature estimates from planktonic foraminiferal data for the Santa Barbara Basin. All records, from central California to Baja California, whether from marine terraces or offshore cores, indicate at least seasonably warmer-than-modern waters during the peak of the last interglacial period at ca. 120 ka.

Pacific Coast↗

Ecosystem history: Terrestrial and fresh-water ecosystems of southern Florida

Introduction Plant and animal communities of the historic Everglades have undergone striking changes over the last few decades, including declines in wading bird populations, invasion by exotic (non-native) plant and animal species, and areal expansion of cattails into sawgrass marshes. Many of these changes have been attributed to human activities in the region, and efforts are underway to restore the Everglades to a more pristine state. Restoration plans include alteration of the present levee and canal system that controls water flow throughout southern Florida and changes in agricultural and land development activities. However, can we be sure that the observed changes are related to human practices rather than representing an extreme in the natural variability of the system? This question should be answered before changing current land-use practices to alleviate environmental concerns. To address this question, it is necessary to look at patterns of floral and faunal change over the last century as well as over the last few millennia. This project aims to reconstruct floral and faunal composition at selected time intervals throughout southern Florida to determine: 1) detailed biotic changes over the last 150 years; 2) the natural range of biotic variability over the last few thousand years; and 3) determine whether any cause-and-effect relationships exist between biotic and environmental changes. Such questions are being addressed by scientists in the South Florida Initiative of the Ecosystem Program at the U.S. Geological Survey.

Florida↗