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At least 1,099 records · Page 61Linked to original sources
USGS2006

Sample size and the detection of a hump-shaped relationship between biomass and species richness in Mediterranean wetlands

Questions: What is the observed relationship between biomass and species richness across both spatial and temporal scales in communities of submerged annual macrophytes? Does the number of plots sampled affect detection of hump-shaped pattern? Location: Don??ana National Park, southwestern Spain. Methods: A total of 102 plots were sampled during four hydrological cycles. In each hydrological cycle, the plots were distributed randomly along an environmental flooding gradient in three contrasted microhabitats located in the transition zone just below the upper marsh. In each plot (0.5 m x 0.5 m), plant density and above- and below-ground biomass of submerged vegetation were measured. The hump-shaped model was tested by using a generalized linear model (GLM). A bootstrap procedure was used to test the effect of the number of plots on the ability to detect hump-shaped patterns. Result: The area exhibited low species density with a range of 1 - 9 species and low values of biomass with a range of 0.2 - 87.6 g-DW / 0.25 m2. When data from all years and all microhabitats were combined, the relationships between biomass and species richness showed a hump-shaped pattern. The number of plots was large enough to allow detection of the hump-shaped pattern across microhabitats but it was too small to confirm the hump-shaped pattern within each individual microhabitat. Conclusion: This study provides evidence of hump-shaped patterns across microhabitats when GLM analysis is used. In communities of submerged annual macrophytes in Mediterranean wetlands, the highest species density occurs in intermediate values of biomass. The bootstrap procedure indicates that the number of plots affects the detection of hump-shaped patterns. ?? IAVS; Opulus Press.

Journal of Vegetation Science↗
USGS1981

Environmental geologic studies on the southeastern United States Atlantic Outer Continental Shelf, 1977-1978

This report is a summary of the second year of marine environmental research activities by the U.S. Geological Survey (USGS) on the southeaster U.S. Atlantic Continental Margin, in accordance with with Memorandum of Understanding (MOU) AA551-MU8-13 between the USGS and the Bureau of Land Management (BLM). The report covers studies whose fieldwork was conducted during the period from 1 October 1977 to 30 September 1978. The results of the first year of study are reported in Popenoe (1978a and b) and as U.S. Department of Commerce NTIS report PB 300-820. The purpose of these investigations is to provide basic geologic and oceanographic data to the BLM Outer Continental Shelf (OCS) Marine Environmental Studies Program in support of management decisions which relate to possible development of oil and gas resources of the continental shelf. The objectives of the USGS-BLM geologic research program for fiscal year 1978 (FY-78) were 1) to determine the sedimentation rates and processes on the upper slope and inner Blake Plateau; 2) to determine the distribution, areal extent, and vertical characteristics of geological features supportive of biological communities; 3) to monitor the transport of bottom sediment across the OCS, evaluate its possible effect on pollutant transfer along the seabed and the potential of sediment as a pollutant sink, determine the implications of erosion/deposition on pipeline emplacement, and aid the interpretation of chemical, biological, and physical data; 4) to determine the concentration levels of chosen trace metals and silica in three chemically defined fractions of the suspended particulate matter (seston); 5) to study the shelf edge and slope near areas of oil and gas interest, and the northern portion of the Blake Plateau for evidence of slope instability and other geologic hazards, and 6) to determine the depth and rate of sediment mixing caused by large storms and/or by benthic organisms and where possible to estimate the rate of active sediment accumulation.

Atlantic Outer Continental Shelf↗
USGS2021

Evidence of successful river spawning by lake trout (Salvelinus namaycush) in the lower Niagara River, Lake Ontario

Restoration of a wild-produced lake trout Salvelinus namaycush population in Lake Ontario has not been successful despite the adult population often meeting or exceeding restoration targets. Lack of high-quality spawning habitat in Lake Ontario is suggested as one impediment to recruitment of wild lake trout, although the quantity and location of spawning habitat is poorly understood. If high-quality spawning habitat is limited in Lake Ontario, lake trout may be using uncommon spawning locations such as rivers. Anecdotal angler accounts point to the Niagara River as a lake trout spawning location. To better understand the potential of the Niagara River as a spawning location, egg and juvenile fish collections were conducted 12–14 river kilometers from the mouth of the Niagara River from 2010 to 2012; and mature female lake trout with surgically implanted acoustic tags were monitored from 2015 to 2019. Genetic analyses confirmed 60% of collected eggs and 93% of collected post-hatch juvenile fish in the Niagara River were lake trout. Tagged female lake trout returned to the Niagara River over consecutive years during the spawning season. The short duration of lake trout presence in the river (mean = 56 days/year) suggests female lake trout use the Niagara River primarily for spawning. Diversity in spawning locations may provide lake trout population’s resilience against environmental variability through a portfolio effect. Improved identification of riverine spawning locations, including their overall contribution to wild recruitment, may be a useful tool for managers to restore a wild-produced population of lake trout in Lake Ontario.

New York, Ontario↗
USGS2018

Improving conservation policy with genomics: A guide to integrating adaptive potential into U.S. Endangered Species Act decisions for conservation practitioners and geneticists

Rapid environmental change makes adaptive potential—the capacity of populations to evolve genetically based changes in response to selection—more important than ever for long-term persistence of at-risk species. At the same time, advances in genomics provide unprecedented power to test for and quantify adaptive potential, enabling consideration of adaptive potential in estimates of extinction risk and laws protecting endangered species. The U.S. Endangered Species Act (ESA) is one of the most powerful environmental laws in the world, but so far, the full potential of genomics in ESA listing and recovery decisions has not been realized by the federal agencies responsible for implementing the ESA or by conservation geneticists. The goal of our paper is to chart a path forward for integrating genomics into ESA decision making to facilitate full consideration of adaptive potential in evaluating long-term risk of extinction. For policy makers, managers, and other conservation practitioners, we outline why adaptive potential is important for population persistence and what genomic tools are available for quantifying it. For conservation geneticists, we discuss how federal agencies can integrate information on the effect of adaptive potential on extinction risk—and the related uncertainty—into decisions, and suggest next steps for advancing understanding of the effect of adaptive potential on extinction risk. The mechanisms and consequences of adaptation are incredibly complex, and we may never have a complete understanding of adaptive potential for any organism. Nevertheless, we argue that the best available evidence regarding adaptive potential should be incorporated by federal agencies into modeling and decision making processes now, while at the same time conserving genome-wide variation and striving for a deeper understanding of adaptive potential and its effects on population persistence to improve decision-making into the future.

Conservation Genetics↗
USGS1980

Intrusions and intrusive complexes in an ophiolite near San Luis Obispo; a chemical and petrologic study

The San Luis Obispo ophiolite is a sequence of mafic and ultramafic rocks that lie as a thrust-like slice on top of Franciscan melange in the southern California Coast Range. The ophiolite comprises the classic Steinmann Trinity of basal serpentinized ultramafic rocks overlain sequentially by spilitized pillow lavas and cherts. The ophiolite is intruded by numerous diabasic dikes and several large intrusive complexes that contain peridotite, gabbro, diabase and felsic rocks. Field relations indicate that this ophiolite originated as a sequence of submarine volcanic flows and breccia units extruded onto an ultramafic basement. Later the volcanic and ultramafic rocks were intruded along their contact by mafic magma that crystallized as a stratiform complex of cumulate peridotite and gabbro. Next, this stratiform complex was intruded by diorite and albite-granite (trondhjemite) sills, which may have been produced by partial melting of gabbros in the upper levels of the stratiform complex. Finally all earlier units were intruded by diabasic sills and dikes that probably were late feeders for the pre-existing volcanic unit. All the ophiolite rocks underwent subsequent highly localized brecciation, under greenschist-facies conditions, in which felsic rocks were incipiently melted by frictional heating. The host rocks and intrusions were metamorphosed at low temperature and the mafic rocks were altered by Na- and Si-metasomatism. Despite this pervasive alteration, evidences of the formational stages of the ophiolite are preserved in disequilibrium mineral assemblages, primarily within mafic and ultramafic rocks of the intrusive complexes. Whole-rock analyses of the ophiolite suite indicate that alteration has obscured but not obliterated the original chemical character of the mafic rocks. The ophiolite diabases and basalts contain up to 6 weight percent Na 2 0 and 58 percent Si0 2 , in contrast to normal Si0 2 contents of 50 percent or less and Na 2 0 contents of less than 3 percent for unaltered oceanic and continental tholeiite basalts. However, the low K 2 0 contents (less than 0.8 percent) of all units in the ophiolite suite indicate that these rocks are not part of an alkalic kindred, but rather are altered tholeiites. Compositions of relict amphibole and plagioclase in the mafic rocks indicate that the ophiolite formed in a high-temperature environment and the deep seated rocks were metamorphosed under amphibolite-facies conditions. A later change in the environmental conditions allowed subsequent low-temperature (greenschist facies) metamorphism and metasomatism. The structure and chemistry of the San Luis Obispo ophiolite support the hypothesis that this body may represent a fragment of oceanic crust and mantle. The volcanic rocks and the intrusive complexes probably formed at a mid-ocean ridge, where conditions of high heat-flow provided the requisite high-temperature environment and promoted the production of mafic magmas. The change to low-temperature conditions probably was due to inception or acceleration of crustal spreading at that portion of the ridge where this ophiolite formed. The nature of brecciation in the ophiolite indicates that the low-temperature environment also was one of greater tectonic disturbance, relative to conditions at the ridge. This tectonically active environment probably corresponds to an island arc where the ophiolite-bearing plate was subducted in an adjacent trench. The absence of a high-pressure mineral assemblage in the San Luis Obispo ophiolite suggests that this segment of ocean-crust and upper mantle was not buried in a subduction zone, but rather was rafted on top of subduction melange (Franciscan Formation) into its present position.

California↗
USGS2023

Poleward amplification, seasonal rainfall and forest heterogeneity in the Miocene of the eastern USA

Paleoclimate reconstructions can provide a window into the environmental conditions in Earth history when atmospheric carbon dioxide concentrations were higher than today. In the eastern USA, paleoclimate reconstructions are sparse, because terrestrial sedimentary deposits are rare. Despite this, the eastern USA has the largest population and population density in North America, and understanding the effects of current and future climate change is of vital importance. Here, we provide terrestrial paleoclimate reconstructions of the eastern USA from Miocene fossil floras. Additionally, we compare proxy paleoclimate reconstructions from the warmest period in the Miocene, the Miocene Climatic Optimum (MCO), to those of an MCO Earth System Model. Reconstructed Miocene temperatures and precipitation north of 35°N are higher than modern. In contrast, south of 35°N, temperatures and precipitation are similar to today, suggesting a poleward amplification effect in eastern North America. Reconstructed Miocene rainfall seasonality was predominantly higher than modern, regardless of latitude, indicating greater variability in intra-annual moisture transport. Reconstructed climates are almost uniformly in the temperate seasonal forest biome, but heterogeneity of specific forest types is evident. Reconstructed Miocene terrestrial temperatures from the eastern USA are lower than modeled temperatures and coeval Atlantic sea surface temperatures. However, reconstructed rainfall is consistent with modeled rainfall. Our results show that during the Miocene, climate was most different from modern in the northeastern states, and may suggest a drastic reduction in the meridional temperature gradient along the North American east coast compared to today.

Global and Planetary Change↗
USGS2010

Feather lead concentrations and 207Pb/206Pb ratios reveal lead exposure history of California Condors (Gymnogyps californianus)

Lead poisoning is a primary factor impeding the survival and recovery of the critically endangered California Condor ( Gymnogyps californianus ). However, the frequency and magnitude of lead exposure in condors is not well-known in part because most blood lead monitoring occurs biannually, and biannual blood samples capture only ∼10% of a bird’s annual exposure history. We investigated the use of growing feathers from free-flying condors in California to establish a bird’s lead exposure history. We show that lead concentration and stable lead isotopic composition analyses of sequential feather sections and concurrently collected blood samples provided a comprehensive history of lead exposure over the 2−4 month period of feather growth. Feather analyses identified exposure events not evident from blood monitoring efforts, and by fitting an empirically derived timeline to actively growing feathers, we were able to estimate the time frame for specific lead exposure events. Our results demonstrate the utility of using sequentially sampled feathers to reconstruct lead exposure history. Since exposure risk in individuals is one determinant of population health, our findings should increase the understanding of population-level effects from lead poisoning in condors; this information may also be helpful for other avian species potentially impacted by lead poisoning.

California↗
USGS2023

Archaeological sites in Grand Canyon National Park along the Colorado River are eroding owing to six decades of Glen Canyon Dam operations

The archaeological record documenting human history in deserts is commonly concentrated along rivers in terraces or other landforms built by river sediment deposits. Today that record is at risk in many river valleys owing to human resource and infrastructure development activities, including the construction and operation of dams. We assessed the effects of the operations of Glen Canyon Dam – which, since its closure in 1963, has imposed drastic changes to flow, sediment supply and distribution, and riparian vegetation – on a population of 362 archaeological sites in the Colorado River corridor through Grand Canyon National Park, Arizona, USA. We leverage 50 years of evidence from aerial photographs and more than 30 years of field observations and measurements of archaeological-site topography and wind patterns to evaluate changes in the physical integrity of archaeological sites using two geomorphology-based site classification systems. We find that most archaeological sites are eroding; moreover, most are at increased risk of continuing to erode, due to six decades of operations of Glen Canyon Dam. Results show that the wind-driven (aeolian) supply of river-sourced sand, essential for covering archaeological sites and protecting them from erosion, has decreased for most sites since 1973 owing to effects of long-term dam operations on river sediment supply and riparian vegetation expansion on sandbars. Results show that the proportion of sites affected by erosion from gullies controlled by the local base-level of the Colorado River has increased since 2000. These changes to landscape processes affecting archaeological site integrity limit the ability of the National Park Service and Grand Canyon-affiliated Native American Tribes to achieve environmental management goals to maintain or improve site integrity in situ . We identify three environmental management opportunities that could be used to a greater extent to decrease the risk of erosion and increase the potential for in-situ preservation of archaeological sites. Environmental management opportunities are: 1) sediment-rich controlled river floods to increase the aeolian supply of river-sourced sand, 2) extended periods of low river flow to increase the aeolian supply of river-sourced sand, 3) the removal of riparian vegetation barriers to the aeolian transport of river-sourced sand.

Arizona↗
USGS2015

Long-term effects of wildfire on greater sage-grouse - integrating population and ecosystem concepts for management in the Great Basin

Greater sage-grouse ( Centrocercus urophasianus ; hereinafter, sage-grouse) are a sagebrush obligate species that has declined concomitantly with the loss and fragmentation of sagebrush ecosystems across most of its geographical range. The species currently is listed as a candidate for federal protection under the Endangered Species Act (ESA). Increasing wildfire frequency and changing climate frequently are identified as two environmental drivers that contribute to the decline of sage-grouse populations, yet few studies have rigorously quantified their effects on sage-grouse populations across broad spatial scales and long time periods. To help inform a threat assessment within the Great Basin for listing sage-grouse in 2015 under the ESA, we conducted an extensive analysis of wildfire and climatic effects on sage-grouse population growth derived from 30 years of lek-count data collected across the hydrographic Great Basin of Western North America. Annual (1984–2013) patterns of wildfire were derived from an extensive dataset of remotely sensed 30-meter imagery and precipitation derived from locally downscaled spatially explicit data. In the sagebrush ecosystem, underlying soil conditions also contribute strongly to variation in resilience to disturbance and resistance to plant community changes (R&R). Thus, we developed predictions from models of post-wildfire recovery and chronic effects of wildfire based on three spatially explicit R&R classes derived from soil moisture and temperature regimes. We found evidence of an interaction between the effects of wildfire (chronically affected burned area within 5 kilometers of a lek) and climatic conditions (spring through fall precipitation) after accounting for a consistent density-dependent effect. Specifically, burned areas near leks nullifies population growth that normally follows years with relatively high precipitation. In models, this effect results in long-term population declines for sage-grouse despite cyclic periods of high precipitation. Based on 30-year projections of burn and recovery rates, our population model predicted steady and substantial long-term declines in population size across the Great Basin. Further, example management scenarios that may help offset adverse wildfire effects are provided by models of varying levels of fire suppression and post-wildfire restoration that focus on areas especially important to sage-grouse populations. These models illustrate how sage-grouse population persistence likely will be compromised as sagebrush ecosystems and sage-grouse habitat are degraded by wildfire, especially in a warmer and drier climate, and by invasion of annual grasses that can increase wildfire frequency and size in the Great Basin.

California, Idaho, Nevada, Oregon, Utah↗
USGS1998

Review of Aquifer Test Results for the Lansdale Area, Montgomery County, Pennsylvania, 1980–95

Aquifer and aquifer-isolation test results in and around North Penn Area 6 Superfund site, Lansdale, Montgomery County, Pennsylvania are reviewed to provide estimated aquifer properties for use in a numerical model of ground-water flow. This review was made to support of remedial action investigations by U.S. Environmental Protection Agency (USEPA), Region III, Philadelphia. The data reviewed are from files of the U.S. Geological Survey, USEPA, and water companies, and from unpublished consultant reports prepared for USEPA and corporations in the Lansdale area. Tested wells are in fractured sedimentary rocks of the Brunswick Formation, which are Triassic-aged, dipping shales and sandstones. Review procedures include, in some cases, new analyses of drawdown during pumping and recovery by use of analytical models of flow to wells. Estimated aquifer transmissivities (T) range from zero to about 1,300 m 2 /d (meters squared per day); most tests indicate T between 10 and 100 m 2 /d. Aquifer-isolation testing results indicate that most flow enters wells at a few discrete zones, probably fractures or bedding-plane openings. The vertical connection between the zones in a single borehole with multiple producing zones commonly is negligible. This suggests that the formation is vertically anisotropic; the hydraulic conductivity is much larger in the horizontal direction than in the vertical direction. Some evidence of well-field-scale horizontal anisotropy exists, with maximum transmissivity aligned with the regional northeast strike of bedding, but this evidence is weak because of the small number of observation wells, particularly wells screened in isolated depth intervals. Analysis of recovery data after constant-pumping-rate aquifer tests and of drawdown during step tests suggests that a significant fraction, perhaps as much as 85 percent, of the drawdown in some production wells is due to well loss or skin effects in or very near the pumped well and is not caused by resistance to flow in the surrounding formations.

Pennsylvania↗
USGS1999

Evaluation of ability of reference toxicity tests to identify stress in laboratory populations of the amphipod Hyalella azteca

Standard methods for conducting toxicity tests imply that the condition of test organisms can be established using reference toxicity tests. However, only a limited number of studies have evaluated whether reference toxicity tests can actually be used to determine if organisms are in good condition at the start of a test. We evaluated the ability of reference toxicants to identify stress associated with starvation in laboratory populations of the amphipod Hyalella azteca using acute toxicity tests and four reference toxicants: KCl, CdCl2, sodium pentachlorophenate (NaPCP), and carbaryl. Stress associated with severe starvation was observed with exposure of amphipods to carbaryl or NaPCP but not with exposure to KCl or CdCl2 (i.e., lower LC50 with severe starvation). Although the LC50s for NaPCP and carbaryl were statistically different between starved and fed amphipods, this difference may not be biologically significant given the variability expected in acute lethality tests. Stress associated with sieving, heat shock, or cold shock of amphipods before the start of a test was not evident with exposure to carbaryl or KCl as reference toxicants. The chemicals evaluated in this study provided minimal information about the condition of the organisms used to start a toxicity test. Laboratories should periodically perform reference toxicity tests to assess the sensitivity of life stages or strains of test organisms. However, use of other test acceptability criteria required in standard methods such as minimum survival, growth, or reproduction of organisms in the control treatment at the end of a test, provides more useful information about the condition of organisms used to start a test compared to data generated from reference toxicity tests.

Environmental Toxicology and Chemistry↗
USGS2011

When a habitat freezes solid: Microorganisms over-winter within the ice column of a coastal Antarctic lake

A major impediment to understanding the biology of microorganisms inhabiting Antarctic environments is the logistical constraint of conducting field work primarily during the summer season. However, organisms that persist throughout the year encounter severe environmental changes between seasons. In an attempt to bridge this gap, we collected ice core samples from Pony Lake in early November 2004 when the lake was frozen solid to its base, providing an archive for the biological and chemical processes that occurred during winter freezeup. The ice contained bacteria and virus-like particles, while flagellated algae and ciliates over-wintered in the form of inactive cysts and spores. Both bacteria and algae were metabolically active in the ice core melt water. Bacterial production ranged from 1.8 to 37.9 μg C L −1 day −1 . Upon encountering favorable growth conditions in the melt water, primary production ranged from 51 to 931 μg C L −1 day −1 . Because of the strong H 2 S odor and the presence of closely related anaerobic organisms assigned to Pony Lake bacterial 16S rRNA gene clones, we hypothesize that the microbial assemblage was strongly affected by oxygen gradients, which ultimately restricted the majority of phylotypes to distinct strata within the ice column. This study provides evidence that the microbial community over-winters in the ice column of Pony Lake and returns to a highly active metabolic state when spring melt is initiated.

FEMS Microbiology Ecology↗
USGS2003

Microbial cycling of mercury in contaminated pelagic and wetland sediments of San Pablo Bay, California

San Pablo Bay is an estuary, within northern San Francisco Bay, containing elevated sediment mercury (Hg) levels because of historic loading of hydraulic mining debris during the California gold-rush of the late 1800s. A preliminary investigation of benthic microbial Hg cycling was conducted in surface sediment (0–4 cm) collected from one salt-marsh and three open-water sites. A deeper profile (0–26 cm) was evaluated at one of the open-water locations. Radiolabeled model Hg-compounds were used to measure rates of both methylmercury (MeHg) production and degradation by bacteria. While all sites and depths had similar total-Hg concentrations (0.3–0.6 ppm), and geochemical signatures of mining debris (as εNd, range: –3.08 to –4.37), in-situ MeHg was highest in the marsh (5.4±3.5 ppb) and ≤0.7 ppb in all open-water sites. Microbial MeHg production (potential rate) in 0–4 surface sediments was also highest in the marsh (3.1 ng g –1 wet sediment day –1 ) and below detection (<0.06 ng g –1 wet sediment day –1 ) in open-water locations. The marsh exhibited a methylation/demethylation (M/D) ratio more than 25× that of all open-water locations. Only below the surface 0–4-cm horizon was significant MeHg production potential evident in the open-water sediment profile (0.2–1.1 ng g –1 wet sediment day –1 ). In-situ Hg methylation rates, calculated from radiotracer rate constants, and in-situ inorganic Hg(II) concentrations compared well with potential rates. However, similarly calculated in-situ rates of MeHg degradation were much lower than potential rates. These preliminary data indicate that wetlands surrounding San Pablo Bay represent important zones of MeHg production, more so than similarly Hg-contaminated adjacent open-water areas. This has significant implications for this and other Hg-impacted systems, where wetland expansion is currently planned.

California↗
USGS2014

Effects of permafrost thaw on CO2 and CH4 exchange in a western Alaska peatland chronosequence

Permafrost soils store over half of global soil carbon (C), and northern frozen peatlands store about 10% of global permafrost C. With thaw, inundation of high latitude lowland peatlands typically increases the surface-atmosphere flux of methane (CH 4 ), a potent greenhouse gas. To examine the effects of lowland permafrost thaw over millennial timescales, we measured carbon dioxide (CO 2 ) and CH 4 exchange along sites that constitute a ~1000 yr thaw chronosequence of thermokarst collapse bogs and adjacent fen locations at Innoko Flats Wildlife Refuge in western Alaska. Peak CH 4 exchange in July (123 ± 71 mg CH 4 –C m −2 d −1 ) was observed in features that have been thawed for 30 to 70 (<100) yr, where soils were warmer than at more recently thawed sites (14 to 21 yr; emitting 1.37 ± 0.67 mg CH 4 –C m −2 d −1 in July) and had shallower water tables than at older sites (200 to 1400 yr; emitting 6.55 ± 2.23 mg CH 4 –C m −2 d −1 in July). Carbon lost via CH 4 efflux during the growing season at these intermediate age sites was 8% of uptake by net ecosystem exchange. Our results provide evidence that CH 4 emissions following lowland permafrost thaw are enhanced over decadal time scales, but limited over millennia. Over larger spatial scales, adjacent fen systems may contribute sustained CH 4 emission, CO 2 uptake, and DOC export. We argue that over timescales of decades to centuries, thaw features in high-latitude lowland peatlands, particularly those developed on poorly drained mineral substrates, are a key locus of elevated CH 4 emission to the atmosphere that must be considered for a complete understanding of high latitude CH 4 dynamics.

Environmental Research Letters↗
USGS2008

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report↗
USGS2025

Late Quaternary environmental change in eastern Beringia

Eastern Beringia (Alaska and western Yukon) is an extensive, high-latitude region of North America that remained largely unglaciated throughout the Quaternary. Consequently, its sedimentary deposits preserve long-term environmental records that have intrigued scientists for nearly a century. Recent advances in palaeoecological proxies and dating methods have proved critical in addressing long-standing questions about regional late Quaternary environmental change. At the same time, they have led to new and sometimes controversial hypotheses. This review covers recent discoveries and unresolved questions focused on the period 57,000–10,000 calendar years before C.E. 1950 (cal yr BP). The middle Wisconsin interstadial (57,000–30,000 cal yr BP) was a period of relative warmth in eastern Beringia, compared with the late Wisconsin (30,000–14,000 cal yr BP). Early in the interstadial occasional Picea woodland was present amongst widespread shrub tundra. Palaeoecological, sedimentary and isotopic data indicate that climate was cooler and drier than the Holocene, with high rates of aeolian activity. Megafauna typically associated with the ‘mammoth steppe’ ecosystem (woolly mammoth [ Mammuthus primigenius ], horse [ Equus ] and steppe-bison [ Bison priscus ]) were present in some abundance. The transition towards late Wisconsin cold-stage conditions (35,000–30,000 cal yr BP) coincided with the establishment of the Bering Land Bridge and featured expansion of spatially varied, herbaceous vegetation, sometimes associated with deep active layers. Sedimentary DNA ( seda DNA) and macrofossil evidence show vegetation was not a prairie-like grassland, and the term “steppe-tundra” is a better descriptor. Permafrost pore-ice isotopic (δ 18 O) records suggest a step change in one or more climate drivers ca. 30,000 cal yr BP, by which time steppe-tundra was established across eastern Beringia. It remains uncertain whether Picea survived cold-stage conditions within isolated refugia, or whether it recolonized from south of the Laurentide-Cordilleran ice sheets. Genetic data suggest that Picea probably survived in situ ; however, there is no definitive fossil evidence to support this. The end-Pleistocene transition from steppe-tundra to shrub tundra began ca. 15,000 cal yr BP and took place within decades at local scales. The expansion of woody taxa coincided with rising sea levels, reduced sea-ice extent and an abrupt shift in atmospheric circulation that enhanced precipitation. During this time, Earth's orbital configuration caused high early-summer temperatures and strong seasonality, creating growing conditions very different from today. The vegetation consisted of Salix and Betula shrub tundra with open areas of herbs and graminoids. During the deglacial warming trend, the Younger Dryas oscillation (12,800–11,700 cal yr BP) was variably expressed. It is generally evident in records affected by adjacent oceans but can be absent at sites in continental areas. These past conditions and paleoenvironmental changes have implications for contemporary issues: hypotheses about Pleistocene mammalian extinction; sensitivity of eastern Beringia to major oceanic reorganizations and high-frequency climate variability; the nature of woody plant expansion with climate warming; grazing, hydroclimate and fire as controls over ecosystems; the efficacy of “Pleistocene rewilding” for carbon capture.

Beringia↗
USGS2011

Detection biases yield misleading patterns of species persistence and colonization in fragmented landscapes

Species occurrence patterns, and related processes of persistence, colonization and turnover, are increasingly being used to infer habitat suitability, predict species distributions, and measure biodiversity potential. The majority of these studies do not account for observational error in their analyses despite growing evidence suggesting that the sampling process can significantly influence species detection and subsequently, estimates of occurrence. We examined the potential biases of species occurrence patterns that can result from differences in detectability across species and habitat types using hierarchical multispecies occupancy models applied to a tropical bird community in an agricultural fragmented landscape. Our results suggest that detection varies widely among species and habitat types. Not incorporating detectability severely biased occupancy dynamics for many species by overestimating turnover rates, producing misleading patterns of persistence and colonization of agricultural habitats, and misclassifying species into ecological categories (i.e., forest specialists and generalists). This is of serious concern, given that most research on the ability of agricultural lands to maintain current levels of biodiversity by and large does not correct for differences in detectability. We strongly urge researchers to apply an inferential framework which explicitly account for differences in detectability to fully characterize species-habitat relationships, correctly guide biodiversity conservation in human-modified landscapes, and generate more accurate predictions of species responses to future changes in environmental conditions.

Las Cruces Biological Station↗
USGS2006

Predicting the persistence of coastal wetlands to global change stressors

Despite progress toward understanding the response of coastal wetlands to increases in relative sea-level rise and an improved understanding of the effect of elevated CO2 on plant species allocation patterns, we are limited in our ability to predict the response of coastal wetlands to the effects associated with global change. Static simulations of the response of coastal wetlands to sea-level rise using LIDAR and GIS lack the biological and physical feedback mechanisms present in such systems. Evidence from current research suggests that biotic processes are likely to have a major influence on marsh vulnerability to future accelerated rates of sea-level rise and the influence of biotic processes likely varies depending on hydrogeomorphic setting and external stressors. We have initiated a new research approach using a series of controlled mesocosm and field experiments, landscape scale studies, a comparative network of brackish coastal wetland monitoring sites and a suite of predictive models that address critical questions regarding the vulnerability of coastal brackish wetland systems to global change. Specifically, this research project evaluates the interaction of sea level rise and elevated CO2 concentrations with flooding, nutrient enrichment and disturbance effects. The study is organized in a hierarchical structure that links mesocosm, field, landscape and biogeographic levels so as to provide important new information that recognizes that coastal wetland systems respond to multiple interacting drivers and feedback effects controlling wetland surface elevation, habitat stability and ecosystem function. We also present a new statistical modelling technique (Structural Equation Modelling) that synthesizes and integrates our environmental and biotic measures in a predictive framework that forecasts ecosystem change and informs managers to consider adaptive shifts in strategies for the sustainable management of coastal wetlands.

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