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Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska

Western Alaska is a potential point-of-entry for foreign-origin influenza A viruses (IAVs) into North America via migratory birds. We sampled waterfowl and gulls for IAVs at Izembek National Wildlife Refuge (NWR) in western Alaska, USA, during late summer and autumn months of 2011–2015, to evaluate the abundance and diversity of viruses at this site. We collected 4842 samples across five years from 25 species of wild birds resulting in the recovery, isolation, and sequencing of 172 IAVs. With the intent of optimizing sampling efficiencies, we used information derived from this multi-year effort to: 1) evaluate from which species we consistently recover viruses, 2) describe viral subtypes of isolates by host species and year, 3) characterize viral gene segment sequence diversity with respect to host species, and assess potential differences in the viral lineages among the host groups, and 4) examine how evidence of intercontinental exchange of IAVs relates to host species. We consistently recovered viruses from dabbling ducks ( Anas spp .), emperor geese ( Chen canagica ) and glaucous-winged gulls ( Larus glaucescens ). There was little evidence for differences in viral subtypes and diversity from different waterfowl hosts, however subtypes and viral diversity varied between waterfowl host groups and glaucous-winged gulls. Furthermore, higher proportions of viral sequences from northern pintails ( Anas acuta ), emperor geese and glaucous-winged gulls were grouped in phylogenetic clades that included IAV sequences originating from wild birds sampled in Asia as compared to non-pintail dabbling ducks, a difference that may be related to intercontinental migratory tendencies of host species. Our summary of research and surveillance efforts at Izembek NWR will assist in future prioritization of which hosts to sample and swab types to collect in Alaska and elsewhere in order to maximize isolate recovery, subtype and sequence diversity for resultant viruses, and detection of evidence for intercontinental viral exchange.

Alaska

One year of migration data for a western yellow-billed cuckoo

In 2009, we studied the migration of the Western Yellow-billed Cuckoo by capturing 13 breeding birds on the middle Rio Grande, New Mexico, and attaching a 1.5-g Mk 14-S British Antarctic Survey geolocator to each bird. In 2010, we recaptured one of the cuckoos, enabling us to download its geolocation data. The cuckoo had flown approximately 9500 km during its southward migration, traveling through Central America to winter in portions of Bolivia, Brazil, Paraguay, and Argentina. The spring migration route differed somewhat from the fall route, with the cuckoo bypassing Central America to migrate through the Caribbean. Additionally, it moved between New Mexico and Mexico at the end of summer in 2009 and again in 2010 before being recaptured at its breeding site. Our results, albeit from one individual, hint at a dynamic migration strategy and have broad implications for the ecology and conservation of the Western Yellow-billed Cuckoo, a species of conservation concern.

Western Birds

Distribution and behaviour of passerines around Peregrine Falco peregrinus eyries in western Greenland

This paper describes the distribution and behaviour of passerine birds within 1 km of Peregrine Falcon Falco peregrinus eyries in western Greenland. Passerine populations were censused in 1983 around six cliffs occupied by nesting Peregrines and at six sites on the open tundra, and in 1984 at two unoccupied sites suitable for Peregrine nesting. Four passerine species accounted for over 90% of birds seen. Within 400 m of Peregrine occupied cliffs, three species, Lapland Longspur Calcarius lapponicus . Northern Wheatear Oenanthe oenanthe , and Common Redpoll Carduelisflammea , were found in lower than average abundance while the fourth, Snow Bunting Plectrophenax nivalis , was found in increased abundance. Our indirect tests suggest that Peregrine presence, rather than direct predation, was responsible for the distributions of the first three species. The Snow Bunting, however, behaviourally adapts to Peregrine presence in order to exploit nesting habitat available at the cliff base. These results contrast strongly with those reported by other Arctic workers, where increased abundances of potential prey were observed in close proximity to nesting Peregrines.

Ibis

Organochlorine contaminants in passeriformes and other avian prey of the peregrine falcon in the western United States

About 1,150 individuals of 38 species of Passeriformes and other small birds were collected in 1980 at 36 locations in eight western U.S. states for organochlorine (OC) chemical analysis. The bird carcasses (less beak, tarsi, gastrointestinal tract, and feathers) were combined by species and location (4 to 15 specimens per sample) into 124 composited samples for analysis. Also analyzed were 77 single specimens of four species, to assess variation in residue concentrations in individual birds. The chemicals detected (greater than 0.05 ppm) were the following (in order of frequency): DDE, polychlorinated biphenyls (PCBs), hexachlorocyclohexane (HCH), heptachlor epoxide, oxychlordane, dieldrin and toxaphene. DDE accounted for 72% of total OC concentrations (ppm DDE/ppm total OCs) overall and PCBs accounted for 3%. DDE mean (geometric) residues were highest in tree swallows ( Tachycineta bicolor Vieillot), 12.0 ppm; killdeer ( Charadrius vociferus L.), 5.9 ppm; and Brewer's blackbirds ( Euphagus cyanocephalus Wagler), 2.7 ppm. Eight migratory species showed mean DDE residues 13 times higher than those in four resident species (1.3 vs. 0.1 ppm, p < 0.05), but PCB residues were similar (0.03 vs. 0.02 ppm). Insectivorous species showed higher DDE, PCB and total OC residues than did either omnivores or granivores ( p < 0.05). Males of some species showed higher residues of DDE, PCBs and total OCs than did females ( p < 0.05). DDE residues, but not PCBs, in killdeer, Brewer's blackbirds and violet-green swallows ( Tachycineta thalassina Swainson) were significantly related (0.01 < p < 0.08) to latitude and longitude of origin. Concentrations of DDE in the carcass fat of some individual tree swallows and killdeer would be in the lethal range if 15 to 20% of the stored DDE were rapidly mobilized to the brain. Samples of 13 species contained DDE concentrations (greater than 3 ppm) considered sufficient to inhibit the normal reproduction of avian predators feeding on them. The evidence suggests that potentially harmful OC concentrations are present in certain western migrants and pose an even greater hazard to avian predators such as the peregrine falcon ( Falco peregrinus Tunstall).

Environmental Toxicology and Chemistry

Influence of monsoon-related riparian phenology on yellow-billed cuckoo habitat selection in Arizona

Aim: The western yellow-billed cuckoo (Coccyzus americanus occidentalis), a Neotropical migrant bird, is facing steep population declines in its western breeding grounds owing primarily to loss of native habitat. The favoured esting habitat for the cuckoo in the south-western United States is low-elevation riparian forests and woodlands. Our aim was to explore relationships between vegetation phenology patterns captured by satellite phenometrics and the distribution of the yellow-billed cuckoo, and to use this information to map cuckoo habitat. Location: Arizona, USA. Methods: Land surface phenometrics were derived from satellite Advanced Very High-Resolution Radiometer (AVHRR), bi-weekly time-composite, ormalized difference vegetation index (NDVI) data for 1998 and 1999 at a resolution of 1 km. Fourier harmonics were used to analyse the waveform of the annual NDVI profile in each pixel. To create the models, we coupled 1998 satellite phenometrics with 1998 field survey data of cuckoo presence or absence and with point data that sampled riparian and cottonwood–willow vegetation types. Our models were verified and refined using field and satellite data collected in 1999. Results: The models reveal that cuckoos prefer areas that experience peak greenness 29 days later, are 36% more dynamic and slightly (< 1%) more productive than their average cottonwood–willow habitat. The results support a scenario in which cuckoos migrate northwards, following the greening of riparian corridors and surrounding landscapes in response to monsoon precipitation, but then select a nesting site based on optimizing the near-term foraging potential of the neighbourhood. Main conclusions: The identification of preferred phenotypes within recognized habitat can be used to refine future habitat models, inform habitat response to climate change, and suggest adaptation strategies. For example, models of phenotype preferences can guide management actions by identifying and prioritizing for conservation those landscapes that reliably exhibit highly preferred phenometrics on a consistent basis.

Arizona

Genetic parentage and mate guarding in the Arctic-breedng Western Sandpiper

Extrapair copulations and fertilizations are common among birds, especially in passerines. So far, however, few studies have examined genetic mating systems in socially monogamous shorebirds. Here, we examine parentage in the Western Sandpiper ( Calidris mauri ). Given that Western Sandpipers nest at high densities on the Arctic tundra, have separate nesting and feeding areas, and show high divorce rates between years, we expected extrapair paternity to be more common in this species compared to other monogamous shorebirds. However, DNA fingerprinting of 98 chicks from 40 families revealed that only 8% of broods contained young sired by extrapair males, and that 5% of all chicks were extrapair. All chicks were the genetic offspring of their social mothers. We found that males followed females more often than the reverse. Also, cuckolded males were separated from their mates for longer than those that did not lose paternity. Although these results suggest a role for male mate guarding, we propose that high potential costs in terms of reduced paternal care likely constrain female Western Sandpipers from seeking extrapair copulations.

The Auk

A multi-model framework for simulating wildlife population response to land-use and climate change

Reliable assessments of how human activities will affect wildlife populations are essential for making scientifically defensible resource management decisions. A principle challenge of predicting effects of proposed management, development, or conservation actions is the need to incorporate multiple biotic and abiotic factors, including land-use and climate change, that interact to affect wildlife habitat and populations through time. Here we demonstrate how models of land-use, climate change, and other dynamic factors can be integrated into a coherent framework for predicting wildlife population trends. Our framework starts with land-use and climate change models developed for a region of interest. Vegetation changes through time under alternative future scenarios are predicted using an individual-based plant community model. These predictions are combined with spatially explicit animal habitat models to map changes in the distribution and quality of wildlife habitat expected under the various scenarios. Animal population responses to habitat changes and other factors are then projected using a flexible, individual-based animal population model. As an example application, we simulated animal population trends under three future land-use scenarios and four climate change scenarios in the Cascade Range of western Oregon. We chose two birds with contrasting habitat preferences for our simulations: winter wrens (Troglodytes troglodytes), which are most abundant in mature conifer forests, and song sparrows (Melospiza melodia), which prefer more open, shrubby habitats. We used climate and land-use predictions from previously published studies, as well as previously published predictions of vegetation responses using FORCLIM, an individual-based forest dynamics simulator. Vegetation predictions were integrated with other factors in PATCH, a spatially explicit, individual-based animal population simulator. Through incorporating effects of landscape history and limited dispersal, our framework predicted population changes that typically exceeded those expected based on changes in mean habitat suitability alone. Although land-use had greater impacts on habitat quality than did climate change in our simulations, we found that small changes in vital rates resulting from climate change or other stressors can have large consequences for population trajectories. The ability to integrate bottom-up demographic processes like these with top-down constraints imposed by climate and land-use in a dynamic modeling environment is a key advantage of our approach. The resulting framework should allow researchers to synthesize existing empirical evidence, and to explore complex interactions that are difficult or impossible to capture through piecemeal modeling approaches. ?? 2008 Elsevier B.V.

Ecological Modelling

Using simulation to improve wildlife surveys: Wintering mallards in Mississippi, USA

Wildlife conservation plans generally require reliable data about population abundance and density. Aerial surveys often can provide these data; however, associated costs necessitate designing and conducting surveys efficiently. We developed methods to simulate population distributions of mallards (Anas platyrhynchos) wintering in western Mississippi, USA, by combining bird observations from three previous strip-transect surveys and habitat data from three sets of satellite images representing conditions when surveys were conducted. For each simulated population distribution, we compared 12 primary survey designs and two secondary design options by using coefficients of variation (CV) of population indices as the primary criterion for assessing survey performance. In all, 3 of the 12 primary designs provided the best precision (CV???11.7%) and performed equally well (WR08082E1d.gif diff ???0.6%). Features of the designs that provided the largest gains in precision were optimal allocation of sample effort among strata and configuring the study area into five rather than four strata, to more precisely estimate mallard indices in areas of consistently high density. Of the two secondary design options, we found including a second observer to double the size of strip transects increased precision or decreased costs, whereas ratio estimation using auxiliary habitat data from satellite images did not increase precision appreciably. We recommend future surveys of mallard populations in our study area use the strata we developed, optimally allocate samples among strata, employ PPS or EPS sampling, and include two observers when qualified staff are available. More generally, the methods we developed to simulate population distributions from prior survey data provide a cost-effective method to assess performance of alternative wildlife surveys critical to informing management decisions, and could be extended to account for effects of detectability on estimates of true abundance. ?? 2009 CSIRO.

Wildlife Research

Vigilance patterns of Bald Eagles feeding in groups

Patterns of vigilant behavior of wintering Bald Eagles ( Haliaeetus leucocephalus ) feeding on spawned salmon were examined in 1983-1984 on the Nooksack River in north-western Washington. Vigilance in feeding birds has, in general, been attributed to predator detection; however, we proposed an additional function of vigilance in socially feeding birds that are vulnerable to food robbery and possible injury by conspecifics. We tested predictions of two nonexclusive hypotheses: (1) eagles look up while feeding to detect danger from humans, and (2) eagles look up while feeding to detect pirating attempts or avoid injury by conspecifics. Results suggest that the function of vigilance varies, depending on the size of the feeding group. Vigilance patterns of eagles feeding in small groups (1-4 eagles) and medium groups (5-7) eagles are consistent with hypothesis 1, whereas those of eagles feeding in large groups (8-14 eagles) are consistent with hypothesis 2. Eagles in small groups were more vigilant (measured as scanning time and rate of head raising) when feeding near potential danger (riverbank cover) than when far from danger. Adult eagles feeding in areas of intense human activity were more vigilant than immatures feeding at the same site and were more vigilant than both adults and immatures feeding at secluded sites. Vigilance declined as group size increased from 1 to 4 eagles, and increased as group size ranged from 8 to 14 eagles. Feedings eagles that were looking up at the time of a pirating attempt were more successful in keeping their food than eagles with their heads down. In feeding areas where human activity was minimal, eagles formed larger groups than at a more disturbed site.

Washington

Long-term effects of the 'Exxon Valdez' oil spill: Sea otter foraging in the intertidal as a pathway of exposure to lingering oil

The protracted recovery of some bird and mammal populations in western Prince William Sound (WPWS), Alaska, and the persistence of spilled 'Exxon Valdez' oil in intertidal sediments, suggests a pathway of exposure to consumers that occupy nearshore habitats. To evaluate the hypothesis that sea otter ( Enhydra lutris ) foraging allows access to lingering oil, we contrast spatial relations between foraging behavior and documented oil distribution. We recovered archival time-depth recorders implanted in 19 sea otters in WPWS, where lingering oil and delayed ecosystem recovery are well documented. Sea otter foraging dives ranged from +2.7 to -92 m below sea level (MLLW), with intertidal accounting for 5 to 38% of all foraging. On average, female sea otters made 16050 intertidal dives per year and 18% of these dives were at depths above the +0.80 m tidal elevation. Males made 4100 intertidal dives per year and 26% of intertidal foraging took place at depths above the +0.80 m tidal elevation. Estimated annual oil encounter rates ranged from 2 to 24 times yr -1 for females, and 2 to 4 times yr -1 for males. Exposure rates increased in spring when intertidal foraging doubled and females were with small pups. In summer 2008, we found sea otter foraging pits on 13.5 of 24.8 km of intertidal shoreline surveyed. Most pits (82%) were within 0.5 m of the zero tidal elevation and 15% were above 0.5 m, the level above which most (65%) lingering oil remains. In August 2008, we detected oil above background concentrations in 18 of 41 (44%) pits excavated by sea otters on beaches with prior evidence of oiling, with total PAH concentrations up to 56000 ng g−1 dry weight. Our estimates of intertidal foraging, the widespread presence of foraging pits in the intertidal, and the presence of oil in and near sea otter foraging pits documents a pathway of exposure from lingering intertidal oil to sea otters foraging in WPWS.

Alaska

Patterns of seabird and marine mammal carcass deposition along the central California coast, 1980-1986

At monthly intervals from February 1980 through December 1986, a 14.5-km section of central California coastline was systematically surveyed for beach-cast carcasses of marine birds and mammals. Five hundred and fifty-four bird carcasses and 194 marine mammal carcasses were found. Common murres, western grebes, and Brandt's cormorants composed 45% of the bird total. California sea lions, sea otters, and harbor seals composed 90% of the mammal total. Several factors appeared to affect patterns of carcass deposition. The El Niño – Southern Oscillation (ENSO) of 1982–1983 was the dominant influence in terms of interannual variation in carcass deposition. During this ENSO, 56% of the seabirds and 48% of the marine mammals washed ashore. Patterns of intra-annual variation were species specific and were related to animal migration patterns, reproduction, and seasonal changes in weather. Nearshore currents and winds influenced the general area of carcass deposition, while beach substrate type and local patterns of sand deposition influenced the location of carcass deposition on a smaller spatial scale. Weekly surveys along a 1.1-km section of coastline indicated that 62% of bird carcasses and 41% of mammal carcasses remained on the beach less than 9 days. Cause of death was determined for only 8% of the carcasses. Oiling was the most common indication of cause of death in birds (6%). Neonates composed 8% of all mammal carcasses.

Canadian Journal of Zoology

Rapid diagnosis of avian influenza virus in wild birds: Use of a portable rRT-PCR and freeze-dried reagents in the field

Wild birds have been implicated in the spread of highly pathogenic avian influenza (HPAI) of the H5N1 subtype, prompting surveillance along migratory flyways. Sampling of wild birds for avian influenza virus (AIV) is often conducted in remote regions, but results are often delayed because of the need to transport samples to a laboratory equipped for molecular testing. Real-time reverse transcriptase polymerase chain reaction (rRT-PCR) is a molecular technique that offers one of the most accurate and sensitive methods for diagnosis of AIV. The previously strict lab protocols needed for rRT-PCR are now being adapted for the field. Development of freeze-dried (lyophilized) reagents that do not require cold chain, with sensitivity at the level of wet reagents has brought on-site remote testing to a practical goal. Here we present a method for the rapid diagnosis of AIV in wild birds using an rRT-PCR unit (Ruggedized Advanced Pathogen Identification Device or RAPID, Idaho Technologies, Salt Lake City, UT) that employs lyophilized reagents (Influenza A Target 1 Taqman; ASAY-ASY-0109, Idaho Technologies). The reagents contain all of the necessary components for testing at appropriate concentrations in a single tube: primers, probes, enzymes, buffers and internal positive controls, eliminating errors associated with improper storage or handling of wet reagents. The portable unit performs a screen for Influenza A by targeting the matrix gene and yields results in 2-3 hours. Genetic subtyping is also possible with H5 and H7 primer sets that target the hemagglutinin gene. The system is suitable for use on cloacal and oropharyngeal samples collected from wild birds, as demonstrated here on the migratory shorebird species, the western sandpiper (Calidrus mauri) captured in Northern California. Animal handling followed protocols approved by the Animal Care and Use Committee of the U.S. Geological Survey Western Ecological Research Center and permits of the U.S. Geological Survey Bird Banding Laboratory. The primary advantage of this technique is to expedite diagnosis of wild birds, increasing the chances of containing an outbreak in a remote location. On-site diagnosis would also prove useful for identifying and studying infected individuals in wild populations. The opportunity to collect information on host biology (immunological and physiological response to infection) and spatial ecology (migratory performance of infected birds) will provide insights into the extent to which wild birds can act as vectors for AIV over long distances.

Journal of Visualized Experiments

Space use, migratory connectivity, and population segregation among Willets breeding in the western Great Basin

Western Willets ( Catoptrophorus semipalmatus inornatus ) were banded (n = 146 breeding adults and chicks) and radio-marked (n = 68 adults) at three western Great Basin wetland complexes to determine inter- and intraseasonal space use and movement patterns (primarily in 1998 and 1999). Birds were then tracked to overwintering sites where migratory connectivity and local movements were documented. Willets arrived synchronously at breeding sites during mid-April and spent less than 12 weeks in the Great Basin. There were no movements to other sites in the Great Basin during the breeding or postbreeding season. However, most breeding birds moved locally on a daily basis from upland nest sites to wetland foraging sites. The mean distance breeding birds were detected from nests did not differ between sexes or between members of a pair, although these distances were greater among postbreeding than breeding birds. Home-range estimates did not differ significantly between paired males and females during breeding or postbreeding. However, female home ranges were larger following breeding than during breeding. Shortly after chicks fledged, adult Willets left the Great Basin for locations primarily at coastal and estuarine sites in the San Francisco Bay area. Limited data revealed little among-site movements once Willets arrived at the coast, and birds appeared to be site faithful in subsequent winters. Winter sites of western Great Basin Willets differed from those used by birds from other areas in the subspecies' range, suggesting another subspecies or distinct population segment may exist. This study illustrates the importance of understanding movements and space use throughout the annual cycle in conservation planning.

California, Oregon

Inability to predict geographic origin of Yellow-headed Blackbirds, Xanthocephalus xanthocephalus, during migration

Yellow-headed Blackbirds (Xanthocephalus xanthocephalus) collected at different breeding locations in Alberta, Saskatchewan, Manitoba, and North Dakota exhibit clearly discernable morphometric differences with larger bodied birds found at more northern and western locations. We reduced eight skeletal measurements and body length from adult female and male Yellow-headed Blackbirds to their first two principal components. Principal component scores progressively increased at more northwestern locations. Principal component scores were also derived from measurements of birds collected in central North Dakota throughout summer and fall. We hypothesized an increase in principal component scores of Yellow-headed Blackbirds from summer through fall within central North Dakota as larger bodied migrants arrived and displaced local breeding birds. However, we were unable to detect an increase in principal component scores from mid-June though mid-September over two years of study. Discriminant models that were developed to distinguish birds breeding in Canada from those breeding in the USA were poor predictors of the migratory status of Yellow-headed Blackbirds. Thus, we were unable to exploit the morphometric differences inherent among Yellow-headed Blackbirds breeding at different geographic locations to quantify the timing or the magnitude of their migration through central North Dakota.

Canadian Field-Naturalist

Implications of historical and contemporary processes on genetic differentiation of a declining boreal songbird: The rusty blackbird

The arrangement of habitat features via historical or contemporary events can strongly influence genomic and demographic connectivity, and in turn affect levels of genetic diversity and resilience of populations to environmental perturbation. The rusty blackbird ( Euphagus carolinus ) is a forested wetland habitat specialist whose population size has declined sharply (78%) over recent decades. The species breeds across the expansive North American boreal forest region, which contains a mosaic of habitat conditions resulting from active natural disturbance regimes and glacial history. We used landscape genomics to evaluate how past and present landscape features have shaped patterns of genetic diversity and connectivity across the species’ breeding range. Based on reduced-representation genomic and mitochondrial DNA, genetic structure followed four broad patterns influenced by both historical and contemporary forces: (1) an east–west partition consistent with vicariance during the last glacial maximum; (2) a potential secondary contact zone between eastern and western lineages at James Bay, Ontario; (3) insular differentiation of birds on Newfoundland; and (4) restricted regional gene flow among locales within western and eastern North America. The presence of genomic structure and therefore restricted dispersal among populations may limit the species’ capacity to respond to rapid environmental change.

Diversity

Effects of the herbicide glyphosate on avian community structure in the Oregon coast range

A study was conducted on vegetative changes induced by the herbicide glyphosate, and the resultant habitat use of birds nesting on two clearcuts in western Oregon. About 23 percent of total plant cover was initially damaged by aerial application of glyphosate. Most measures of vegetation on the treated site decreased relative to the untreated site 1 year after glyphosate application. By 2 years post-spray, vegetation on the treated site had recovered to near pre-spray status. No difference in density of the bird community was evident between treated and untreated sites during all years of study although individual species densities were modified. Several bird species decreased their use of shrub cover, and increased their use of deciduous trees 1 year after treatment. By 2 years post-spray, many species had returned to pre-spray use of most measured habitat components. Results indicated that application of glyphosate can modify the density and habitat use of birds.

Forest Science

Projecting climate effects on birds and reptiles of the Southwestern United States

We modeled the current and future breeding ranges of seven bird and five reptile species in the Southwestern United States with sets of landscape, biotic (plant), and climatic global circulation model (GCM) variables. For modeling purposes, we used PRISM data to characterize the climate of the Western United States between 1980 and 2009 (baseline for birds) and between 1940 and 2009 (baseline for reptiles). In contrast, we used a pre-selected set of GCMs that are known to be good predictors of southwestern climate (five individual and one ensemble GCM), for the A1B emission scenario, to characterize future climatic conditions in three time periods (2010–39; 2040–69; and, 2070–99). Our modeling approach relied on conceptual models for each target species to inform selection of candidate explanatory variables and to interpret the ecological meaning of developed probabilistic distribution models. We employed logistic regression and maximum entropy modeling techniques to create a set of probabilistic models for each target species. We considered climatic, landscape, and plant variables when developing and testing our probabilistic models. Climatic variables included the maximum and minimum mean monthly and seasonal temperature and precipitation for three time periods. Landscape features included terrain ruggedness and insolation. We also considered plant species distributions as candidate explanatory variables where prior ecological knowledge implicated a strong association between a plant and animal species. Projected changes in range varied widely among species, from major losses to major gains. Breeding bird ranges exhibited greater expansions and contractions than did reptile species. We project range losses for Williamson’s sapsucker and pygmy nuthatch of a magnitude that could move these two species close to extinction within the next century. Although both species currently have a relatively limited distribution, they can be locally common, and neither are presently considered candidates for prospective endangerment. We project range losses of over 40 percent, from its current extent of occurrence, for the plateau striped whiptail, Arizona black rattlesnake, and common lesser earless lizard. Currently, these reptile species are thought to be common or at least locally abundant throughout their ranges. The total contribution of plants in each distribution model was very small, but models that contained at least one plant always outperformed models with only physical variables (climatic or landscape). The magnitude of change in projected range increased further into the future, especially when a plant was in the model. Among bird species, those that had the strongest association with a landscape feature during the breeding season, such as terrain ruggedness and insolation, exhibited the smallest contractions in projected breeding range in the future. In contrast, bird species that had weak associations with landscape features, but strong climatic associations, suffered the greatest breeding range contractions. Thus, landscape effects appeared to buffer some of the negative effects of climate change for some species. Among bird species, magnitude of change in projected breeding range was positively related to the annual average temperature of their baseline distribution, thus species with the warmest breeding ranges exhibited the greatest changes in future breeding ranges. This pattern was not evident for reptiles, but might exist if additional species were included in the model. Our results provide managers with a series of projected range maps that will enable scientists, concerned citizens, and wildlife managers to identify what the potential effects of climate change will be on bird and reptile distributions in the Western United States. We hope that our results can be used in proactive ways to mitigate some of the potential effects of climate change on selected species.

Colorado Plateau;Sonoran Desert

Megafires and thick smoke portend big problems for migratory birds

In 2020, the fire season affecting the western United States reached unprecedented levels. The 116 fires active in September consumed nearly 20,822 km 2 ( https://inciweb.nwcg.gov/accessible-view/ Accessed 2020-09-29) with eighty percent of this footprint (16,567 km 2 ) from 68 fires occurring within California, Oregon, and Washington. Although the 2020 fire season was the most extreme on record, it exemplified patterns of increased wildfire size, number, timing, return frequency, and extent which are linked to climate-driven changes in precipitation and temperature affecting fire ignition and severity (Westerling 2016, Goss et al. 2020, Weber and Yadav 2020).

California, Oregon, Washington