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River otter distribution in Nebraska

The river otter ( Lontra canadensis ) was extirpated from Nebraska, USA, in the early 1900s and reintroduced starting in 1986. Information is needed regarding the distribution of river otters in Nebraska before decisions can be made regarding its conservation status. Understanding distribution of a species is critically important for effective management. We investigated river otter distribution in Nebraska with occupancy modeling and maximum entropy (Maxent) modeling using 190 otter sign observations on Nebraska's navigable rivers and 380 historical otter records from November 1977 to April 2014. Both methods identified the Platte River, Elkhorn River, central and eastern Niobrara River, and southern Loup River system as core areas within the distribution of otters in Nebraska. The Maxent model provided more liberal estimates of site occupancy and identified some smaller rivers as being within the distribution of otters in Nebraska, which were not identified using occupancy modeling. We recommend that multiple data sets and analysis methods be used to estimate species distribution because this allows for the broadest geographical coverage and decreases the likelihood of overlooking areas with fewer animal records. If further reintroduction efforts or translocation efforts are to take place in the future, we recommend focusing on areas with high modeled occupancy but few historical and survey records

Nebraska

Distribution and condition of larval and juvenile Lost River and shortnose suckers in the Williamson River Delta restoration project and Upper Klamath Lake, Oregon

Federally endangered Lost River sucker ( Deltistes luxatus ) and shortnose sucker ( Chasmistes brevirostris ) were once abundant throughout their range but populations have declined. They were extirpated from several lakes in the 1920s and may no longer reproduce in others. Poor recruitment to the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable or high quality rearing habitat. In addition, larval suckers may be swept downstream from suitable rearing areas in Upper Klamath Lake into Keno Reservoir, which is seasonally anoxic. The Nature Conservancy flooded about 3,600 acres (1,456 hectares) to the north of the Williamson River mouth (Tulana Unit) in October 2007 and about 1,400 acres (567 hectares) to the south and east of the Williamson River mouth (Goose Bay Unit) a year later to retain larval suckers in Upper Klamath Lake, create nursery habitat, and improve water quality. The U.S. Geological Survey joined a long-term research and monitoring program in collaboration with The Nature Conservancy, the Bureau of Reclamation, and Oregon State University in 2008 to assess the effects of the Williamson River Delta restoration on the early life-history stages of Lost River and shortnose suckers. The primary objectives of the research were to describe habitat colonization and use by larval and juvenile suckers and non-sucker fishes and to evaluate the effects of the restored habitat on the health and condition of juvenile suckers. This report summarizes data collected in 2009 by the U.S. Geological Survey as a part of this monitoring effort. The Williamson River Delta appeared to provide suitable rearing habitat for endangered larval Lost River and shortnose suckers in 2008 and 2009. Larval suckers captured in this delta typically were larger than those captured in the adjacent lake habitat in 2008, but the opposite was true for larval shortnose suckers in 2009. Mean sample density was greater for both species in the Williamson River Delta than adjacent lake habitats in both years. Larval suckers captured in the restoration area, however, had less food in their guts compared to those captured in Upper Klamath or Agency Lakes. Differential distribution among sucker species within the Williamson River Delta and between the delta and adjacent lakes indicated that shortnose suckers likely benefited more from the restored Williamson River Delta than Lost River or Klamath largescale suckers ( Catostomus snyderi ). Catch rates in shallow-water habitats with vegetation within the delta were higher for shortnose and Klamath largescale suckers than for larval Lost River suckers in 2008 and 2009.However, catch rates at the mouth of the Williamson River in 2008 and in Upper Klamath Lake in 2009 were higher for larval Lost River suckers than for larvae identified as either shortnose or Klamath largescale suckers. Shortnose suckers also comprised the greatest portion of age-0 suckers captured in the Williamson River Delta in 2008 and 2009. The relative abundance of age-1 shortnose suckers was high in our catches compared to age-1 Lost River suckers in 2009 in the delta and adjacent lakes, which may or may not indicate shortnose suckers experienced better survival than Lost River suckers in 2008. Age-0 and age-1 suckers were similarly distributed throughout the Williamson River Delta in 2008 and 2009. Age-0 suckers used shallow vegetated and unvegetated habitats primarily in mid- to late July in both years. A comparison of catch rates between our study and a concurrent study in Upper Klamath Lake indicated that Goose Bay was the most used habitat in 2009 and the Tulana Unit was the one of the least used habitats in 2008 and 2009 by age-0 suckers. Catch rates for age-1 suckers, however, indicated that bo

Oregon

History of Snake River Canyon indicated by revised stratigraphy of Snake River Group near Hagerman and King Hill, Idaho

A discovery that debris left by the Bonneville Flood (Melon Gravel) overlies McKinney Basalt about 200 feet above the Snake River near King Hill requires that the stratigraphy of the Snake River Group be revised. In former usage, the McKinney Basalt and its immediately older companion, the Wendell Grade Basalt, were considered on the basis of equivocal field relations to be younger than the Melon Gravel and were assigned to the Recent. These lava flows are here reclassified as Pleistocene. The Bancroft Springs Basalt, which consists of both subaerial lava and pillow lava in a former Snake River canyon, was previously separated from the McKinney but is now combined with the McKinney. Accordingly, the name Bancroft Springs Basalt is here abandoned. This revised stratigraphy is first described from geomorphic relations of the McKinney Basalt near King Hill and is then discussed in the light of drainage changes caused by local lava flows during entrenchment of the Snake River. Near King Hill, a former Snake River canyon was completely filled by McKinney Basalt at the place called Bancroft Springs, hut the depth of this lava in the next several miles of the canyon downstream (along a route that approximately coincides with the present canyon) steadily decreased. This ancestral geomorphology is inferred from the former canyon route and, also, from the continuity in gradient of the McKinney lava surface downstream from Bancroft Springs. The drainage history recorded by various lava flows and river deposits of the Snake River Group indicates that the McKinney and Wendell Grade Basalts erupted after the Snake River canyon had reached its present depth of about 500 feet. The Snake River of that time, as far downstream as Bliss, flowed approximately along its present route. The Wood River of that time, however, skirted the north flank of Gooding Butte and joined the ancestral Snake at a junction, now concealed by lava, north of the present canyon about 3 miles west of Bliss. From that place the former Snake River canyon, also now concealed by lava, continued west to Bancroft Springs and thence along a route close to the present canyon to King Hill. To become entrenched in a canyon 500 feet deep, the Snake River downstream from Hagerman became progressively more incised while its upstream route was pushed south in several earlier canyons by intermittent lava flows. Distinctive gravel deposits help to establish the episodes of progressive canyon cutting and to determine the routes of ancestral drainage, including the former position of the Wood River. As canyon cutting continued, springs began to emerge where lavas had filled the earlier canyons. When the Snake River canyon eventually attained its approximate present depth, the Wendell Grade Basalt erupted near Shoshone and, as several tongues, spread west to the canyon rim opposite Hagerman. One tongue crossed the future route of the Wood River, and another covered an upland area of Sand Springs Basalt that had previously reached the canyon floor at Hagerman. The McKinney Basalt then erupted from McKinney Butte northeast of Bliss and spread southward as a subaerial flow, covering part of the Wendell Grade Basalt. It filled the ancestral Wood River canyon and the Snake River canyon of that time west of Bliss as far downstream as King Hill. The resulting dam of lava impounded a deep lake, which extended upstream in the canyon beyond Hagerman. Copious amounts of the McKinney spilled into this temporary lake and produced pillow lava. About 2 miles west of Bliss, pillow lava 500 feet thick completely fills the former canyon and is protected by rimrock of the subaerial McKinney Basalt. From Bliss, the pillow facies extends upstream as far as the McKinney rimrock - about 5 miles. Eruption of the McKinney Basalt diverted the Wood River to a course along the southeast edge of this lava flow. The temporary lake that was dammed by McKinney Basalt west of Bliss spilled along the sou

Idaho

Floods of Ohio and Mississippi Rivers, January-February 1937, with a section on the Flood deposits of the Ohio River, January-February 1937

In January and February 1937 the Ohio and mid-Mississippi Rivers experienced floods which, over reaches many hundreds of miles in length, exceeded all previously recorded stages. When measured by the loss of life and property, extent of damage, and general disruption of human activities, these floods constituted a major catastrophe. The floods were caused by a succession of heavy rainstorms that began late in December 1936 and continued nearly to the end of the following January. Although the storms covered a considerable part of the lower Mississippi River Basin and almost the entire Ohio River Basin, the center of heaviest precipitation was in the middle and lower portions of the Ohio River Valley. The total storm period can be subdivided into several individual storms, which were more or less clearly demarked by short intervening periods of little or no precipitation. Although the individual storm periods were the same or nearly the same over wide areas, their subdivisions were somewhat different in the most widely separated parts of the affected areas, with intermediate gradations in the intervening areas. The heaviest rainfall--that of January 20 to 25--was centered in the lower Ohio Valley, and, falling as it did upon a region with soil saturated and waterways already running full, it had the effect of producing extreme floods. The small quantity of snow on the ground over the higher eastern parts of the area at the beginning of the storm period disappeared in a short time. Some of the precipitation occurred in the form of snow, but this snow and the associated cold weather were much less significant in their influence on the floods than in the misery and discomfort they caused to ill-sheltered flood refugees and flood-bound people. Sequence and time of the storms were such that in the upper and smaller tributary basins the associated flood rises tended to clear to a notable degree before the-next flood rises came; hence many of these tributaries were at no time in extreme flood. In the lower reaches of the largest tributaries, and especially on the middle and lower reaches of the Ohio River, there were extreme and almost continuously increasing accumulations of run-off, which culminated in the region of Louisville, Ky., in stages 10 or 11 feet higher than any previously known. The precipitation was heaviest in the Ohio River Basin, and the flood in the Mississippi River, like other notable floods of the past, was caused largely by the extraordinary contributions from the Ohio River. The river stages exceeded those previously recorded for the lower 700 miles on the Ohio River and for 250 miles .on the Mississippi River below the Ohio. At Cairo, Ill., at the mouth Of the Ohio River, the river stage was higher for a period of 19 days, from January 24 to February 11, than at any previous time on record. The height above previous flood stages diminished materially as the flood progressed down the Mississippi. The mean precipitation ever the Ohio River Basin during the storm period was. 12.85 inches. The snow on the ground at the beginning of the period is estimated to have been equivalent to a mean depth of 0.10 inch of water over the basin. Out of the total precipitation 8.9 inches appeared as flood flow. On January 26 the computed volume of water in the stream channels of the Ohio River Basin was 56,000,000 acre-feet, equivalent to a depth of 5.1 inches over the drainage basin. The maximum discharge of the Ohio River at its mouth was 1,880,000 second-feet on February 1. On February 2, the day of the crest stage at the mouth of the Ohio, the computed volume of water on the surface channel system was equivalent to a depth of 3.7 inches over the drainage basin, of which 2.4 inches was in the 337-mile reach of the Ohio River between Louisville, Ky., and the mouth. This water-supply paper presents records of stage and discharge for the period including the floods at about 250 measurement stations, records of stage and discharge for the period including the floods at about 250 measurement stations, records of storage in many reservoirs, a summary of peak discharges with comparative data for other floods at about 470 measurement points, and tables showing crest stages along an aggregate length of stream channel for 5,000 miles. The report also includes basic information in regard to the weather associated with the floods, results of detailed studies of the rainfall and run-off, analyses of the volume of flood waters'in the surface channel systems during the progress of the floods, and many other kinds of flood information. Following the main flood report is a brief report entitled "Flood" deposits of the Ohio River, January-February 1937, a study of sedimentation." An abstract of that report is presented on page 693.

Ohio River, Mississippi River

Floods of June 21–July 1, 2018, in the Floyd River and Little Sioux River Basins, northwestern Iowa

The Floyd River and Little Sioux River Basins in northwestern Iowa flooded on June 21–July 1, 2018, after sustained rainfall on June 14–27, 2018. Within the Floyd River Basin, rainfall totals from June 14 to 21 preceding flooding were 3.01 inches (in.) at Le Mars, 4.50 in. at Orange City, and 7.44 in. at Sheldon. Within the Little Sioux River Basin, rainfall amounts for the 2-week period from June 14 to 27 preceding flooding were 11.29 in. at Lake Park, 12.95 in. at Milford, 5.56 in. at Spencer, 7.71 in. at Sioux Rapids, and 6.13 in. at Cherokee. Flooding in the Floyd River Basin resulted in a recorded maximum peak discharge of 14,300 cubic feet per second (ft 3 /s; annual exceedance probability [AEP] estimate between 4 and 10 percent) at the U.S. Geological Survey (USGS) streamgage Floyd River at Alton, Iowa (06600100), and a recorded maximum peak discharge of 9,180 ft 3 /s (AEP estimate greater than 10 percent) at the USGS streamgage Floyd River at James, Iowa (06600500). Flooding in the Little Sioux River Basin resulted in a recorded maximum peak discharge of 16,300 ft 3 /s (AEP estimate between 4 and 10 percent) at the USGS streamgage Little Sioux River at Linn Grove, Iowa (06605850), and maximum peak discharges of 18,700 ft 3 /s (AEP estimate greater than 10 percent) and 20,000 ft 3 /s (AEP estimate greater than 10 percent) were recorded at the USGS streamgages Little Sioux River at Correctionville, Iowa (06606600), and Little Sioux River near Turin, Iowa (06607500), respectively. High-water mark elevations were surveyed at 19 locations along the Floyd River and 22 locations along the Little Sioux River to develop 2 flood profiles: a 52.5-mile profile along the Floyd River from State Highway 3 at Le Mars to U.S. Highway 18 at Sheldon that includes the USGS streamgage Floyd River at Alton and a 101-mile profile along the Little Sioux River from U.S. Highway 59 at Cherokee to U.S. Highway 18 north of Spencer that includes the USGS streamgage Little Sioux River at Linn Grove.

Iowa

Trends in streamflow characteristics of selected sites in the Elkhorn River, Salt Creek, and Lower Platte River Basins, Eastern Nebraska, 1928-2004, and evaluation of streamflows in relation to instream-flow criteria, 1953-2004

The Nebraska Department of Natural Resources approved instream-flow appropriations on the Platte River to maintain fish communities, whooping crane roost habitat, and wet meadows used by several wild bird species. In the lower Platte River region, the Nebraska Game and Parks Commission owns an appropriation filed to maintain streamflow for fish communities between the Platte River confluence with the Elkhorn River and the mouth of the Platte River. Because Elkhorn River flow is an integral part of the flow in the reach addressed by this appropriation, the Upper Elkhorn and Lower Elkhorn Natural Resources Districts are involved in overall management of anthropogenic effects on the availability of surface water for instream requirements. The Physical Habitat Simulation System (PHABSIM) and other estimation methodologies were used previously to determine instream requirements for Platte River biota, which led to the filing of five water appropriations applications with the Nebraska Department of Natural Resources in 1993 by the Nebraska Game and Parks Commission. One of these requested instream-flow appropriations of 3,700 cubic feet per second was for the reach from the Elkhorn River to the mouth of the Platte River. Four appropriations were granted with modifications in 1998, by the Nebraska Department of Natural Resources. Daily streamflow data for the periods of record were summarized for 17 streamflow-gaging stations in Nebraska to evaluate streamflow characteristics, including low-flow intervals for consecutive durations of 1, 3, 7, 14, 30, 60, and 183 days. Temporal trends in selected streamflow statistics were not adjusted for variability in precipitation. Results indicated significant positive temporal trends in annual flow for the period of record at eight streamflow-gaging stations - Platte River near Duncan (06774000), Platte River at North Bend (06796000), Elkhorn River at Neligh (06798500), Logan Creek near Uehling (06799500), Maple Creek near Nickerson (06800000), Elkhorn River at Waterloo (06800500), Salt Creek at Greenwood (06803555), and Platte River at Louisville (06805500). In general, sites in the Elkhorn River Basin upstream from Norfolk showed fewer significant trends than did sites downstream from Norfolk and sites in the Platte River and Salt Creek basins, where trends in low flows also were positive. Historical Platte River streamflow records for the streamflow-gaging station at Louisville, Nebraska, were used to determine the number of days per water year (Sept. 30 to Oct. 1) when flows failed to satisfy the minimum criteria of the instream-flow appropriation prior to its filing in 1993. Before 1993, the median number of days the criteria were not satisfied was about 120 days per water year. During 1993 through 2004, daily mean flows at Louisville, Nebraska, have failed to satisfy the criteria for 638 days total (median value equals 21.5 days per year). Most of these low-flow intervals occurred in summer through early fall. For water years 1953 through 2004, of the discrete intervals when flow was less that the criteria levels, 61 percent were 3 days or greater in duration, and 38 percent were 7 days or greater in duration. The median duration of intervals of flow less than the criteria levels was 4 consecutive days during 1953 through 2004.

Nebraska

Hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River, Nebraska— With special emphasis on the Niobrara National Scenic River

The Niobrara River is an ecologically and economically important resource in Nebraska. The Nebraska Department of Natural Resources’ recent designation of the hydraulically connected surface- and groundwater resources of the Niobrara River Basin as “fully appropriated” has emphasized the importance of understanding linkages between the physical and ecological dynamics of the Niobrara River so it can be sustainably managed. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey investigated the hydrogeomorphic and hydraulic attributes of the Niobrara River in northern Nebraska. This report presents the results of an analysis of hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River and its valley for the approximately 330-mile reach from Dunlap Diversion Dam to its confluence with the Missouri River. Two spatial scales were used to examine and quantify the hydrogeomorphic segments and hydraulic microhabitats of the Niobrara River: a basin scale and a reach scale. At the basin scale, digital spatial data and hydrologic data were analyzed to (1) test for differences between 36 previously determined longitudinal hydrogeomorphic segments; (2) quantitatively describe the hydrogeomorphic characteristics of the river and its valley; and (3) evaluate differences in hydraulic microhabitat over a range of flow regimes among three fluvial geomorphic provinces. The statistical analysis of hydrogeomorphic segments resulted in reclassification rates of 3 to 28 percent of the segments for the four descriptive geomorphic elements. The reassignment of classes by discriminant analysis resulted in a reduction from 36 to 25 total hydrogeomorphic segments because several adjoining segments shared the same ultimate class assignments. Virtually all of the segment mergers were in the Canyons and Restricted Bottoms (CRB) fluvial geomorphic province. The most frequent classes among hydrogeomorphic segments, and the dominant classes per unit length of river, are: a width-restricted valley confinement condition, sinuous-planview pattern, irregular channel width, and an alternate bar configuration. The Niobrara River in the study area flows through a diversity of fluvial geomorphic settings in its traverse across northern Nebraska. In the Meandering Bottoms (MB) fluvial geomorphic province, river discharge magnitudes are low, and the valley exerts little control on the channel-planview pattern. Within the CRB province, the river flows over a diversity of geologic formations, and the valley and river narrow and expand in approximate synchronicity. In the Braided Bottoms (BB) fluvial geomorphic province, the river primarily flows over Cretaceous Pierre Shale, the valley and channel are persistently wide, and the channel slope is generally uniform. The existence of vegetated islands and consequent multithread channel environments, indicated by a higher braided index, mostly coincided with reaches having gentler slopes and less unit stream power. Longitudinal hydrology curves indicate that the flow of the Niobrara River likely is dominated by groundwater as far downstream as Norden. Unit stream power values in the study area vary between 0 and almost 2 pounds per foot per second. Within the MB province, unit stream power steadily increases as the Niobrara gains discharge from groundwater inflow, and the channel slope steepens. The combination of steep slopes, a constrained channel width, and persistent flow within the CRB province results in unit stream power values that are between three and five times greater than those in less confined segments with comparable or greater discharges. With the exception of hydrogeomorphic segment 3, which is affected by Spencer Dam, unit stream power values in the BB province are generally uniform. Channel sinuosity values in the study area varied generally between 1 and 2.5, but with locally higher values measured in the MB province and at the entrenched bedrock meanders of hydrogeomorphic segment 18 in the CRB province. The differences in channel morphology and hydraulic geometries between fluvial geomorphic provinces are evident in the types, relative abundance, and response of hydraulic microhabitats to changing discharges. The four gaging stations chosen for hydraulic microhabitat analysis are distributed among three different fluvial geomorphic provinces. In the MB province, the smaller channel and lower discharges resulted in the dominance of shallow and intermediate-depth hydraulic environments with the vast majority of hydraulic microhabitat restricted to shallow categories even during upper-decile discharges. In the CRB province, intermediate depth hydraulic conditions, particularly intermediate-swift, dominate over all ranges of discharge. Hydraulic microhabitat conditions were most diverse in the BB province, with most hydraulic microhabitat categories present over the entire range of discharges analyzed. The calculated differences in hydraulic microhabitat distributions, abundance, and adjustments between streamflow-gaging stations were the result of differences in physical structure of the channel and subsequent channel hydraulic geometry. At the reach scale, field measurements made in water years 2008 and 2009 in four study reaches within the Scenic Reach were used to (1) characterize the elevation and geomorphic processes associated with fluvial landforms, (2) build hydraulic geometry relations, (3) examine flow hydraulics over a range of discharges, and (4) examine the types and responses of hydraulic microhabitats to a range of flow magnitudes. Four landform groups were identified and named in order of increasing elevation: low flood plains, intermediate flood plains, low terraces, and high terraces. The terraces were poorly characterized because the surveys did not extend across the full width of the alluvial valley bottom. The two lowest fluvial landforms are likely active in the modern hydroclimatic regime. Sediment samples obtained in the study reaches indicate that the primary bed material in the active channel ranged in size from coarse silt to coarse sand. Grain-size distributions from samples also indicate that the bed of the Niobrara River among the study reaches coarsens and has increasing grainsize variability in the downstream direction. Values of at-a-station hydraulic geometry exponents indicate that the Niobrara River in the study reaches adjusts its geometry to changing discharges primarily through increases in flow depth and velocity. Relations at one cross section indicated that, at least locally, changes in width were also an important channel adjustment mechanism. Hydraulic behavior over the range of flows measured was not consistent among all study reaches, but two general modes of hydraulic behavior were observed in the reaches with substantial coverage of the bed by fine sediment. At the Sunny Brook and Muleshoe study reaches, average boundary-shear stress remained approximately constant, and hydraulic resistance decreased, for discharges below 900 cubic feet per second (ft 3 /s). Above 900 ft 3 /s, average boundary shear stress and hydraulic resistance both increased. The Rock Barn study reach did not exhibit the same two-mode hydraulic behavior observed at the Sunny Brook and Muleshoe reaches. The coincident increase in boundary shear stress above 900 ft 3 /s observed at the Sunny Brook and Muleshoe study reaches represents a potential hydraulic threshold above which bedload transport rates were likely to increase markedly. No consistent bed-adjustment pattern (scour or fill) was identified in the study reaches over the range of flows or over the measurement season. Analysis of hydraulic microhabitats over the range of discharges measured at the study reaches indicates that some percentage of most habitat niche categories was available for at least one discharge condition, but the majority of hydraulic habitat available was within the intermediate-swift and deepswift habitat niche categories. Deep-swift conditions dominated nearly all study reaches under all measured discharge conditions. Slight differences in habitat distributions were observed between the study reaches with substantial coverage of the bed by fine sediment—Sunny Brook, Muleshoe, and Rock Barn—and the bedrock-dominated reach, Crooked Creek. Although the four study reaches occupy three different hydrogeomorphic segments, the types, relative abundance, and response of hydraulic microhabitat niche distributions to changing discharge conditions generally were similar among all reaches.

Nebraska

Estimation, distribution, and development of a surrogate model for Escherichia coli in the New River, New River Gorge National Park and Preserve, West Virginia, 2021–23

The New River Gorge National Park and Preserve in West Virginia receives more than 1 million visitors each year, many of whom come to enjoy the New River, which is known for its whitewater recreation. However, most of the tributaries within the New River Gorge are impaired by fecal-coliform bacteria, which are at concentrations that may exceed recreational-contact standards, posing a potential health risk to the public and, therefore, creating a need to better understand the spatial and temporal distribution of fecal-coliform bacteria and to communicate this information to park visitors. Concentrations of Escherichia coli , a species of fecal-coliform bacteria, were monitored in the New River and selected tributaries from October 2021 through September 2023, with emphasis placed on the primary recreational-contact season from May through October. Composite and cross-sectional water samples were taken from three U.S. Geological Survey (USGS) monitoring locations: the New River at Highway 41 at Prince, West Virginia (USGS 03184905), New River at Thurmond, West Virginia (USGS 03185400; hereafter, Thurmond), and New River at Fayette, West Virginia (USGS 03186000). Periodic longitudinal transects included water samples collected below seven major tributaries of the New River within the gorge. Water-quality parameters, including water temperature, pH, specific conductance, dissolved oxygen, and turbidity, were recorded with each E. coli water sample. During the 2 years of sampling, E. coli concentrations in samples collected from the New River ranged from less than 1 to 1,100 most probable number (MPN) per 100 milliliters (MPN/100 mL). The recreational-contact standard, which is based on the U.S. Environmental Protection Agency 90th-percentile statistical threshold value for E. coli concentrations (320 MPN/100 mL), was exceeded in 11 of the 110 samples collected from the New River during this study. Water-quality parameter measurements and E. coli concentrations in collected samples were generally consistent among USGS monitoring locations throughout the New River Gorge; however, storm events created notable exceptions because they increased tributary streamflow and E. coli concentrations in samples, particularly at the New River below Piney Creek at McCreery, West Virginia (USGS 03185208), and New River Below Arbuckle Creek at Thurmond, West Virginia (USGS 03185440), monitoring locations. Escherichia coli concentrations of cross-sectional samples tended to be consistent across the New River, except for a few nearshore samples. Sample E. coli concentrations and corresponding measurements of continuous water-quality parameters, streamflow, and precipitation data from Thurmond and the Piney Creek at Raleigh, West Virginia (USGS 03185000; tributary to the New River) monitoring locations were evaluated for use in a near-real-time E. coli surrogate model. The antecedent mean 24-hour turbidity at Thurmond was selected as the best variable for a simple linear regression surrogate model for the log 10 E. coli concentration in the New River and had an adjusted coefficient of determination of 0.556 and a p-value of less than 0.001. The regression equation surrogate model suggests that the recreational-contact standard is exceeded when the antecedent mean 24-hour turbidity at Thurmond is 23.6 formazin nephelometric units or higher (with a 95-percent confidence interval of 19.4–30.7 formazin nephelometric units). Evaluated against a turbidity duration curve, this standard is exceeded 7.5 percent of the time at Thurmond. This surrogate model could help New River Gorge National Park and Preserve staff provide near-real-time information about E. coli concentrations and related recreational-contact risks to the public.

West Virginia

Determination of the components of stormflow using water chemistry and environmental isotopes, Mattole River basin, California

The chemical and isotopic composition of rainfall and stream water was monitored during a storm in the Mattole River basin of northwestern California. About 250 mm of rain fell during 6 days (∼80% within a 42 h period) in late January, 1972, following 24 days of little or no precipitation. River discharge near Petrolia increased from 22 m 3 s −1 to a maximum of 1300 m 3 s −1 while chloride and silica concentrations decreased only from 3.2 to 2.1 and 11.5 to 8.6 mgl −1 , respectively. Meanwhile, the isotopic composition of the river changed from δD = -42%, δ 18 O = -6.8% and 40 tritium units (T.U.) to extreme values at highest flow of δD = -35%, δ 18 O = -5.9% and 25 T.U. in response to volume-weighted rainfall averaging δD = -19.5%, δ 18 O = -3.1% and 18 T.U. Despite much rainfall of a composition quite different from that of the prestorm river water, “buffering” processes in the watershed greatly restricted changes in the chemical and isotopic content of the river during storm runoff. Because of the physical and hydrologic characteristics of the watershed, major contributions of groundwater to stormflow are very unlikely. The large increase in dissolved chemical load observed at maximum river discharge required that extensive interaction with, and presumably penetration of, soils occurred within a few hours time. Such a large increase in chemical load also required subsurface stormflow throughout a high proportion of the watershed. Chemical and isotopic stabilization of stormflow is believed to be due mainly to displacement of prestorm soil water, with some effects on river chemistry due to rapid rain-soil interactions. The isotopic and chemical composition of prestorm soil moisture cannot readily be predicted a priori because of possible variability in rainfall composition, evaporation, and exchange with atmospheric moisture, nor can it be assumed that baseflow has a predictable relation to the chemical or isotopic composition of water displaced from soils during storms. Therefore, it seems inappropriate to draw conclusions as to the relative proportions of groundwater and rainfall in runoff from a particular storm based only on the average compositions of rainfall, stormflow, and prestorm river water, as has been done in most previous isotope hydrograph studies. Given the great variation in hydrology, topography, soil characteristics, rainfall intensity and quantity, etc. from place to place, the relative amount of overland flow, subsurface flow from the unsaturated zone and of groundwater in stormflow can vary greatly in time and space.

California

Movement and spawning of American shad transported above dams on the Roanoke River, North Carolina and Virginia

American shad Alosa sapidissima are in decline throughout much of their native range as a result of overfishing, pollution, and habitat alteration in coastal rivers where they spawn. One approach to restoration in regulated rivers is to provide access to historical spawning habitat above dams through a trap-and-transport program. We examined the initial survival, movement patterns, spawning, and downstream passage of sonic-tagged adult American shad transported to reservoir and riverine habitats upstream of hydroelectric dams on the Roanoke River, North Carolina and Virginia, during 2007–2009. Average survival to release in 2007–2008 was 85%, but survival decreased with increasing water temperature. Some tagged fish released in reservoirs migrated upstream to rivers; however, most meandered back and forth within the reservoir. A higher percentage of fish migrated through a smaller (8,215-ha) than a larger (20,234-ha) reservoir, suggesting that the population-level effects of transport may depend on upper basin characteristics. Transported American shad spent little time in upper basin rivers but were there when temperatures were appropriate for spawning. No American shad eggs were collected during weekly plankton sampling in upper basin rivers. The estimated initial survival of sonic-tagged American shad after downstream passage through each dam was 71–100%; however, only 1% of the detected fish migrated downstream through all three dams and many were relocated just upstream of a dam late in the season. Although adult American shad were successfully transported to upstream habitats in the Roanoke River basin, under present conditions transported individuals may have reduced effective fecundity and postspawning survival compared with nontransported fish that spawn in the lower Roanoke River.

North Carolina, Virginia

Floods of July 23-26, 2010, in the Little Maquoketa River and Maquoketa River Basins, Northeast Iowa

Minor flooding occurred July 23, 2010, in the Little Maquoketa River Basin and major flooding occurred July 23–26, 2010, in the Maquoketa River Basin in northeast Iowa following severe thunderstorm activity over the region during July 22–24. A breach of the Lake Delhi Dam on July 24 aggravated flooding on the Maquoketa River. Rain gages at Manchester and Strawberry Point, Iowa, recorded 72-hour-rainfall amounts of 7.33 and 12.23 inches, respectively, on July 24. The majority of the rainfall occurred during a 48-hour period. Within the Little Maquoketa River Basin, a peak-discharge estimate of 19,000 cubic feet per second (annual flood-probability estimate of 4 to 10 percent) at the discontinued 05414500 Little Maquoketa River near Durango, Iowa streamgage on July 23 is the sixth largest flood on record. Within the Maquoketa River Basin, peak discharges of 26,600 cubic feet per second (annual flood-probability estimate of 0.2 to 1 percent) at the 05416900 Maquoketa River at Manchester, Iowa streamgage on July 24, and of 25,000 cubic feet per second (annual flood-probability estimate of 1 to 2 percent) at the 05418400 North Fork Maquoketa River near Fulton, Iowa streamgage on July 24 are the largest floods on record for these sites. A peak discharge affected by the Lake Delhi Dam breach on July 24 at the 05418500 Maquoketa River near Maquoketa, Iowa streamgage, located downstream of Lake Delhi, of 46,000 cubic feet per second on July 26 is the third highest on record. High-water marks were measured at five locations along the Little Maquoketa and North Fork Little Maquoketa Rivers between U.S. Highway 52 near Dubuque and County Road Y21 near Rickardsville, a distance of 19 river miles. Highwater marks were measured at 28 locations along the Maquoketa River between U.S. Highway 52 near Green Island and State Highway 187 near Arlington, a distance of 142 river miles. High-water marks were measured at 13 locations along the North Fork Maquoketa River between Rockdale Road near Maquoketa and U.S. Highway 52 near Luxemburg, a distance of 90 river miles. The high-water marks were used to develop flood profiles for the Little Maquoketa, North Fork Little Maquoketa, Maquoketa, and North Fork Maquoketa Rivers.

Iowa

Groundwater quality in the Chemung River, Eastern Lake Ontario, and Lower Hudson River Basins, New York, 2013

In a study conducted by the U.S. Geological Survey (USGS) in cooperation with the New York State Department of Environmental Conservation, water samples were collected from 4 production wells and 4 domestic wells in the Chemung River Basin, 8 production wells and 7 domestic wells in the Eastern Lake Ontario Basin, and 12 production wells and 13 domestic wells in the Lower Hudson River Basin (south of the Federal Lock and Dam at Troy) in New York. All samples were collected in June, July, and August 2013 to characterize groundwater quality in these basins. The samples were collected and processed using standard USGS procedures and were analyzed for 148 physiochemical properties and constituents, including dissolved gases, major ions, nutrients, trace elements, pesticides, volatile organic compounds, radionuclides, and indicator bacteria. The Chemung River Basin study area covers 1,744 square miles in south-central New York and encompasses the part of the Chemung River Basin that lies within New York. Two of the wells sampled in the Chemung River Basin are completed in sand and gravel, and 6 are completed in bedrock. Groundwater in the Chemung River Basin was generally of good quality, although properties and concentrations of some constituents—sodium, arsenic, aluminum, iron, manganese, radon-222, total coliform bacteria, and Escherichia coli bacteria—equaled or exceeded primary, secondary, or proposed drinking-water standards. The constituent most frequently detected in concentrations exceeding drinking-water standards (six of eight samples) was radon-222. The Eastern Lake Ontario Basin study area covers 3,225 square miles in north-central New York. The Eastern Lake Ontario Basin (between the Oswego River Basin and the St. Lawrence River Basin) includes the Mid-Northern Lake Ontario Basin, the Black River Basin, and the Chaumont River-Perch River Basin. Five of the wells sampled in the Eastern Lake Ontario Basin are completed in sand and gravel, and 10 are completed in bedrock. Groundwater in the Eastern Lake Ontario Basin was generally of good quality, although properties and concentrations of some constituents—color, pH, sodium, dissolved solids, fluoride, iron, manganese, uranium, gross-α radioactivity, radon-222, total coliform bacteria, and fecal coliform bacteria—equaled or exceeded primary, secondary, or proposed drinking-water standards. The constituent most frequently detected in concentrations exceeding drinking-water standards (10 of 15 samples) was radon-222. The Lower Hudson River Basin study area covers 5,607 square miles and encompasses the part of the Lower Hudson River Basin that lies within New York plus the parts of the Housatonic, Hackensack, Bronx, and Saugatuck River Basins that are in New York. Twelve of the wells sampled in the Lower Hudson River Basin are completed in sand-and-gravel deposits, and 13 are completed in bedrock. Groundwater in the Lower Hudson River Basin was generally of good quality, although properties and concentrations of some constituents—pH, sodium, chloride, dissolved solids, arsenic, aluminum, iron, manganese, radon-222, total coliform bacteria, fecal coliform bacteria, Escherichia coli bacteria, and heterotrophic plate count—equaled or exceeded primary, secondary, or proposed drinking-water standards. The constituent most frequently detected in concentrations exceeding drinking-water standards (20 of 25 samples) was radon-222.

New York

Hydrology of the upper Cheyenne River basin: Part A. Hydrology of stock-water reservoirs in upper Cheyenne River basin; Part B. Sediment sources and drainage-basin characteristics in upper Cheyenne River basin

The objective of this investigation was to determine the effect on runoff of the many stock reservoirs in the Cheyenne River basin above Angostura Dam. As a first step it was necessary to determine, within reasonable limits of accuracy, the number of reservoirs in the basin, the storage capacity, the drainage area, and the water loss from each. A sampling method was adopted because the size of the basin, 9,100 square miles, prohibited examination of all reservoirs within the drainage area. Forty-nine sample areas of 9 square miles each were selected as a 5-percent sample of the 955 complete quarter townships within the basin above Angostura Dam. All reservoirs located within the sample quarter townships were surveyed.

South Dakota, Wyoming

Nitrogen and phosphorus in the Upper Mississippi River: Transport, processing, and effects on the river ecosystem

Existing research on nutrients (nitrogen and phosphorus) in the Upper Mississippi River (UMR) can be organized into the following categories: (1) Long-term changes in nutrient concentrations and export, and their causes; (2) Nutrient cycling within the river; (3) Spatial and temporal patterns of river nutrient concentrations; (4) Effects of elevated nutrient concentrations on the river; and (5) Actions to reduce river nutrient concentrations and flux. Nutrient concentration and flux in the Mississippi River have increased substantially over the last century because of changes in land use, climate, hydrology, and river management and engineering. As in other large floodplain rivers, rates of processes that cycle nitrogen and phosphorus in the UMR exhibit pronounced spatial and temporal heterogeneity because of the complex morphology of the river. This spatial variability in nutrient processing creates clear spatial patterns in nutrient concentrations. For example, nitrate concentrations generally are much lower in off-channel areas than in the main channel. The specifics of in-river nutrient cycling and the effects of high rates of nutrient input on UMR have been less studied than the factors affecting nutrient input to the river and transport to the Gulf of Mexico, and important questions concerning nutrient cycling in the UMR remain. Eutrophication and resulting changes in river productivity have only recently been investigated the UMR. These recent studies indicate that the high nutrient concentrations in the river may affect community composition of aquatic vegetation (e. g., the abundance of filamentous algae and duckweeds), dissolved oxygen concentrations in off-channel areas, and the abundance of cyanobacteria. Actions to reduce nutrient input to the river include changes in land-use practices, wetland restoration, and hydrological modifications to the river. Evidence suggests that most of the above methods can contribute to reducing nutrient concentration in, and transport by, the UMR, but the impacts of mitigation efforts will likely be only slowly realized. ?? USGS, US Government 2010.

Hydrobiologia

Distribution and condition of larval and juvenile Lost River and shortnose suckers in the Williamson River Delta restoration project and Upper Klamath Lake, Oregon

Federally endangered Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) were once abundant throughout their range but populations have declined. They were extirpated from several lakes in the 1920s and may no longer reproduce in other lakes. Poor recruitment to the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable or high-quality rearing habitat. In addition, larval suckers may be swept downstream from suitable rearing areas in Upper Klamath Lake into Keno Reservoir, where they are assumed lost to Upper Klamath Lake populations. The Nature Conservancy flooded about 3,600 acres (1,456 hectares) to the north of the Williamson River mouth (Tulana) in October 2007, and about 1,400 acres (567 hectares) to the south and east of the Williamson River mouth (Goose Bay Farms) in October 2008, in order to retain larval suckers in Upper Klamath Lake, create nursery habitat, and improve water quality. The U.S. Geological Survey joined a long-term research and monitoring program in collaboration with The Nature Conservancy, the Bureau of Reclamation, and Oregon State University in 2008 to assess the effects of the Williamson River Delta restoration on the early life-history stages of Lost River and shortnose suckers. The primary objectives of the research were to describe habitat colonization and use by larval and juvenile suckers and non-sucker fishes and to evaluate the effects of the restored habitat on the health and condition of juvenile suckers. This report summarizes data collected in 2010 by the U.S. Geological Survey as a part of this monitoring effort and follows two annual reports on data collected in 2008 and 2009. Restoration modifications made to the Williamson River Delta appeared to provide additional suitable rearing habitat for endangered Lost River and shortnose suckers from 2008 to 2010 based on sucker catches. Mean larval sample density was greater for both species in the Williamson River Delta than adjacent lake habitats in all 3 years. In addition to larval suckers, at least three age classes of juvenile suckers were captured in the delta. The shallow Goose Bay Farms and Tulana Emergent were among the most used habitats by age-0 suckers in 2009. Both of these environments became inaccessible due to low water in 2010, however, and were not sampled after July 19, 2010. In contrast, age-1 sucker catches shifted from the shallow water (about 0.5-1.5 m deep) on the eastern side of the Williamson River Delta in May, to deeper water environments (greater than 2 m) by the end of June or early July in all 3 years. Differential distribution among sucker species within the Williamson River Delta and between the delta and adjacent lakes indicated that shortnose suckers likely benefited more from the restored Williamson River Delta than Lost River or Klamath largescale suckers (Catostomus snyderi) . Catch rates in shallow-water habitats within the delta were higher for shortnose and Klamath largescale sucker larvae than for larval Lost River suckers in 2008, 2009, and 2010. Shortnose suckers also comprised the greatest portion of age-0 suckers captured in the Williamson River Delta in all 3 years of the study. The relative abundance of age-1 shortnose suckers was high in our catches compared to age-1 Lost River suckers in 2009 and 2010. The restored delta also created habitat for several piscivorous fishes, but only two appeared to pose a meaningful threat of predation to suckers - fathead minnows (Pimephales promelas) and yellow perch (Perca flavescens) . Fathead minnows that prey on larval but not juvenile suckers dominated catches in all sampling areas. Yellow perch also were abundant throughout the study area, but based on their gape size and co-occurrence with suckers, most were only capable of preying on larvae. Low May lake-surface elevation, below average snow pack, and anticipated irrigation demands indicated late summer water levels in Upper Klamath Lake would be unusually low in 2010. In response to concerns by the Fish and Wildlife Service and The Nature Conservancy that low-water conditions might strand fish on the delta, low water seine surveys were implemented. Eleven fishes, including both endangered suckers, were captured in seine surveys, including both species of suckers, which continued to use shallow water less than 0.4 m deep through September 21. Lake elevation declined to 1,261.54 m (4,138.9 feet) in mid-September 2010, but did not appear to strand fish or cause large-scale fish mortality.

Oregon

Aquatic Trophic Productivity model: A decision support model for river restoration planning in the Methow River, Washington

Introduction The U.S. Geological Survey (USGS) has developed a dynamic food-web simulation model to provide decision support for Bureau of Reclamation (Reclamation) river restoration projects in the Methow River, Washington. This modeling effort was done to contribute to Reasonable and Prudent Alternative actions 56 and 57of the 2014 Federal Columbia River Power System Biological Opinion (FCRPS BO), which calls for exploration of modeling as a means to help evaluate Endangered Species Act (ESA)-listed fish response to river restoration efforts. In the Methow River, these species of concern include Upper Columbia River (UCR) spring Chinook salmon ( Oncorhynchus tshawytscha ) and UCR summer steelhead ( Oncorhynchus mykiss ). Additionally, the Independent Scientific Advisory Board (ISAB) for the Columbia River has identified the need for modeling (Independent Scientific Advisory Board, 2011a)—including models that incorporate food-web dynamics (Independent Scientific Advisory Board, 2011b)—to better understand how restoration and management strategies might enhance salmon and steelhead populations. Dynamic food-web models, even relatively simple ones, can be valuable tools for exploring responses to river restoration. Although these models have rarely been applied to rivers and streams (but see Mcintire and Colby, 1978; Power and others, 1995), they are commonly used for management decisions in terrestrial and ocean ecosystems (Christensen and Pauly, 1993; Evans and others, 2013). One of the main strengths of these models is that they are rooted in the fundamental laws of thermodynamics (that is, mass balance). Moreover, these models can be easily adapted to different contexts by adding or subtracting different species from the web and by mechanistically linking the dynamics of web members to local environmental conditions, such as water temperature, stream discharge, and channel hydraulics (Power and others, 1995; Doyle, 2006). Alternative management actions can then be evaluated by changing these environmental conditions to simulate potential outcomes following restoration. In this report, we outline the structure of a stream food-web model constructed to explore how alternative river restoration strategies may affect stream fish populations. We have termed this model the “Aquatic Trophic Productivity model” (ATP). We present the model structure, followed by three case study applications of the model to segments of the Methow River watershed in northern Washington. For two case studies (middle Methow River and lower Twisp River floodplain), we ran a series of simulations to explore how food-web dynamics respond to four distinctly different, but applied, strategies in the Methow River watershed: (1) reconnection of floodplain aquatic habitats, (2) riparian vegetation planting, (3) nutrient augmentation (that is, salmon carcass addition), and (4) enhancement of habitat suitability for fish. For the third case study, we conducted simulations to explore the potential fish and food-web response to habitat improvements conducted in 2012 at the Whitefish Island Side Channel, located in the middle Methow River.

Washington

Flood of August 24–25, 2016, Upper Iowa River and Turkey River, northeastern Iowa

Major flooding occurred August 24–25, 2016, in the Upper Iowa River Basin and Turkey River Basin in northeastern Iowa following severe thunderstorm activity over the region. About 8 inches of rain were recorded for the 24-hour period ending at 4 p.m., August 24, at Decorah, Iowa, and about 6 inches of rain were recorded for the 24-hour period ending at 7 a.m., August 24, at Cresco, Iowa, about 14 miles northwest of Spillville, Iowa. A maximum peak-of-record discharge of 38,000 cubic feet per second in the Upper Iowa River at streamgage 05388250 Upper Iowa River near Dorchester, Iowa, occurred on August 24, 2016, with an annual exceedance-probability range of 0.2–1 percent. High-water marks were measured at six locations along the Upper Iowa River between State Highway 26 near the mouth at the Mississippi River and State Highway 76 about 3.5 miles south of Dorchester, Iowa, a distance of 15 river miles. Along the profiled reach of the Turkey River, a maximum peak-of-record discharge of 15,300 cubic feet per second at streamgage 05411600 Turkey River at Spillville, Iowa, occurred on August 24, 2016, with an annual exceedance-probability range of 1–2 percent. A maximum peak discharge of 35,700 cubic feet per second occurred on August 25, 2016, along the profiled reach of the Turkey River at streamgage 05411850 Turkey River near Eldorado, Iowa, with an annual exceedance-probability range of 0.2–1 percent. High-water marks were measured at 11 locations along the Turkey River between County Road B64 in Elgin and 220th Street, located about 4.5 miles northwest of Spillville, Iowa, a distance of 58 river miles. The high-water marks were used to develop flood profiles for the Upper Iowa River and Turkey River.

Iowa

Report of the River Master of the Delaware River for the period December 1, 2015 - November 30, 2016

Executive Summary A Decree of the Supreme Court of the United States, entered June 7, 1954 ( New Jersey v. New York , 347 U.S. 995), established the position of Delaware River Master within the U.S. Geological Survey. In addition, the Decree authorizes the diversion of water from the Delaware River Basin and requires compensating releases from reservoirs owned by New York City to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master provide reports to the Court not less frequently than annually. This report is the 63rd annual report of the River Master of the Delaware River. The report covers the 2016 River Master report year, which is the period from December 1, 2015, to November 30, 2016. During the report year, precipitation in the upper Delaware River Basin was 38.6 inches or 87 percent of the long-term average. Combined storage remained high (above 80 percent of combined capacity) for much of the year and did not decline below 80 percent of combined capacity until August 2016. The lowest combined storage was 106.406 billion gallons or 39 percent of combined capacity on November 28, 2016. Delaware River Basin Commission Resolution 2016–07 necessitated a basinwide drought watch on November 23, 2016. The drought watch continued through the remainder of the 2016 report year. Delaware River Master operations during the year were conducted as stipulated by the Decree and the Flexible Flow Management Program. New York City and New Jersey fully complied with the terms of the Decree and, during drought watch conditions, with the Delaware River Basin Commission Resolution 2016–07 terms. Diversions from the Delaware River Basin by New York City and New Jersey fully complied with the Decree. The reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 126 days during the report year. Interim Excess Release Quantity and conservation releases, designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs, were also made during the report year. Water quality in the Delaware River estuary between the streamgages at Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at several locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites.

Delaware, Maryland, New Jersey, New York, Pennsylv