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At least 109 records · Page 6Linked to original sources

1994 annual status report: a summary of fish data in six reaches of the upper Mississippi River system

The Long Term Resource Monitoring Program (LTRMP) completed 2,653 collections of fishes from stratified random and permanently fixed sampling locations in six study reaches of the Upper Mississippi River System during 1994. Collection methods included day and night electrofishing, hoop netting, fyke netting (two net sizes), gill netting, seining, and trawling in select aquatic area classes. The six LTRMP study areas are Pools 4 (excluding Lake Pepin), 8, 13, and 26 of the Upper Mississippi River, and unimpounded reach of the Mississippi River near Cape Girardeau, Missouri, and the La Grange Pool of the Illinois River. A total of 61-79 fish species were detected in each study area. For each of the six LTRMP study areas, this report contains summaries of (1) sampling efforts in each combination of gear type and aquatic area class, (2) total catches of each species from each gear type, (3) mean catch-per-unit of gear effort statistics and standard errors for common species from each combination of aquatic area class and selected gear type, and (4) length distributions of common species from selected gear types.

Long Term Resource Monitoring Program

1993 annual status report: a summary of fish data in six reaches of the upper Mississippi River system

The Long Term Resource Monitoring Program (LTRMP) completed 1,994 collections of fishes from stratified random and permanently fixed sampling locations in six study reaches of the Upper Mississippi River System during 1993. Collection methods included day and night electrofishing, hoop netting, fyke netting (two net sizes), gill netting, seining, and trawling in select aquatic area classes. The six LTRMP study reaches are Pools 4 (excluding Lake Pepin), 8, 13, and 26 of the Upper Mississippi River, an unimpounded reach of the Mississippi River near Cape Girardeau, Missouri, and the La Grange Pool of the Illinois River. A total of 62-78 fish species were detected in each study reach. For each of the six LTRMP study reaches, this report contains summaries of: (1) sampling efforts in each combination of gear type and aquatic area class, (2) total catches of each species from each gear type, (3) mean catch-per-unit of gear effort statistics and standard errors for common species from each combination of aquatic area class and selected gear type, and (4) length distributions of common species from selected gear types.

Long Term Resource Monitoring Program

If you build it and they come, will they stay? Maturation of constructed fish spawning reefs in the St. Clair-Detroit River System

Constructed rock reefs have been used to remediate spawning habitat for Lake Sturgeon ( Acipenser fulvescens ) and other lithophilic spawning fishes in the St. Clair-Detroit River System, North America. Early projects used a cross-channel design and species-specific metrics (e.g., proximity to historical spawning locations) to guide reef placement. However, the Middle Channel Reefs and portions of other early projects were compromised by fine sediment accumulation. Therefore, geomorphological criteria were considered in siting reefs constructed after 2013 to avoid sediment sources and improve the likelihood of successful reef function. To evaluate the effectiveness of the revised placement process, we quantified physical maturation of constructed reefs using annual side-scan and down-looking sonar surveys beginning in 2014 and underwater video surveys beginning in 2015. Reef areas and hardness were measured from sonar surveys and underwater video was used to quantify surficial sediment composition. Size and hardness of reefs developed using geomorphological criteria decreased with time, but at rates slower than what was observed at the Middle Channel Reefs. Sediment composition of the reefs remained similar through 2017 and prevalence of reef rock was high, except at Hart's Light Reef, where dreissenid mussel shells composed 32% of the surficial substrate by age three. However, accumulation of fine sediments was documented at all reefs in 2018. Despite using geomorphic criteria to identify areas most suitable for reef construction, reef sediment composition has changed, and future reef restoration projects could benefit by incorporating methods for maintenance, in addition to using geomorphic criteria, to identify restoration sites.

Michigan, Ontario

Development of water level regulation strategy for fish and wildlife, upper Mississippi River system

Water level regulation has been proposed as a tool for maintaining or enhancing fish and wildlife resources in navigation pools and associated flood plains of the Upper Mississippi River System. Research related to the development of water level management plans is being conducted under the Long Term Resource Monitoring Program. Research strategies include investigations of cause and effect relationships, spatial and temporal patterns of resource components, and alternative problem solutions. The principal hypothesis being tested states that water level fluctuations resulting from navigation dam operation create less than optimal conditions for the reproduction and growth of target aquatic macrophyte and fish species. Representative navigation pools have been selected to describe hydrologic, engineering, and legal constraints within which fish and wildlife objectives can be established. Spatial analyses are underway to predict the magnitude and location of habitat changes that will result from controlled changes in water elevation.

Mississippi River

Lake Sturgeon, Lake Whitefish, and Walleye egg deposition patterns with response to fish spawning substrate restoration in the St. Clair–Detroit River system

Egg deposition and use of restored spawning substrates by lithophilic fishes (e.g., Lake Sturgeon Acipenser fulvescens , Lake Whitefish Coregonus clupeaformis , and Walleye Sander vitreus ) were assessed throughout the St. Clair–Detroit River system from 2005 to 2016. Bayesian models were used to quantify egg abundance and presence/absence relative to site-specific variables (e.g., depth, velocity, and artificial spawning reef presence) and temperature to evaluate fish use of restored artificial spawning reefs and assess patterns in egg deposition. Lake Whitefish and Walleye egg abundance, probability of detection, and probability of occupancy were assessed with detection-adjusted methods; Lake Sturgeon egg abundance and probability of occurrence were assessed using delta-lognormal methods. The models indicated that the probability of Walleye eggs occupying a site increased with water velocity and that the rate of increase decreased with depth, whereas Lake Whitefish egg occupancy was not correlated with any of the attributes considered. Egg deposition by Lake Whitefish and Walleyes was greater at sites with high water velocities and was lower over artificial spawning reefs. Lake Sturgeon eggs were collected least frequently but were more likely to be collected over artificial spawning reefs and in greater abundances than elsewhere. Detection-adjusted egg abundances were not greater over artificial spawning reefs, indicating that these projects may not directly benefit spawning Walleyes and Lake Whitefish. However, 98% of the Lake Sturgeon eggs observed were collected over artificial spawning reefs, supporting the hypothesis that the reefs provided spawning sites for Lake Sturgeon and could mitigate historic losses of Lake Sturgeon spawning habitat.

Transactions of the American Fisheries Society

Spatial and temporal variance in fatty acid and stable isotope signatures across trophic levels in large river systems

Fatty acid and stable isotope signatures allow researchers to better understand food webs, food sources, and trophic relationships. Research in marine and lentic systems has indicated that the variance of these biomarkers can exhibit substantial differences across spatial and temporal scales, but this type of analysis has not been completed for large river systems. Our objectives were to evaluate variance structures for fatty acids and stable isotopes (i.e. δ13C and δ15N) of seston, threeridge mussels, hydropsychid caddisflies, gizzard shad, and bluegill across spatial scales (10s-100s km) in large rivers of the Upper Mississippi River Basin, USA that were sampled annually for two years, and to evaluate the implications of this variance on the design and interpretation of trophic studies. The highest variance for both isotopes was present at the largest spatial scale for all taxa (except seston δ15N) indicating that these isotopic signatures are responding to factors at a larger geographic level rather than being influenced by local-scale alterations. Conversely, the highest variance for fatty acids was present at the smallest spatial scale (i.e. among individuals) for all taxa except caddisflies, indicating that the physiological and metabolic processes that influence fatty acid profiles can differ substantially between individuals at a given site. Our results highlight the need to consider the spatial partitioning of variance during sample design and analysis, as some taxa may not be suitable to assess ecological questions at larger spatial scales.

River Research and Applications

An Adaptive Management Approach for Summer Water Level Reductions on the Upper Mississippi River System

The primary purpose of this report is to provide an adaptive management approach for learning more about summer water level reductions (drawdowns) as a management tool, including where and how drawdowns can be applied most effectively within the Upper Mississippi River System. The report reviews previous drawdowns conducted within the system and provides specific recommendations for learning more about the lesser known effects of drawdowns and how the outcomes can be influenced by different implementation strategies and local conditions. The knowledge gained can be used by managers to determine how best to implement drawdowns in different parts of the UMRS to help achieve management goals. The information and recommendations contained in the report are derived from results of previous drawdown projects, insights from regional disciplinary experts, and the experience of the authors in experimental design, modeling, and monitoring. Modeling is a critical part of adaptive management and can involve conceptual models, simulation models, and empirical models. In this report we present conceptual models that express current understanding regarding functioning of the UMRS as related to drawdowns and highlight interactions among key ecological components of the system. The models were developed within the constraints of drawdown timing, magnitude (depth), and spatial differences in effects (longitudinal and lateral) with attention to ecological processes affected by drawdowns. With input from regional experts we focused on the responses of vegetation, fish, mussels, other invertebrates, and birds. The conceptual models reflect current understanding about relations and interactions among system components, the expected strength of those interactions, potential responses of system components to drawdowns, likelihood of the response occurring, and key uncertainties that limit our ability to make accurate predictions of effects (Table 1, Fig. 4-10). Based on this current understanding, the main questions still associated with drawdowns include (1) the effects of frequency of drawdowns (from once every few years to multiple years in succession); (2) timing of the beginning of drawdowns (follow the descending arm of the flood pulse versus always beginning in early summer); (3) long-term benefits (greater than 5-6 years), especially as compared to known short-term loses (e.g., mortality of mussels in exposed areas, loss of submersed vegetation in exposed areas, cost of advanced dredging); and (4) the effects in northern (above pool 14) versus southern pools (pool 14 and below, and the Illinois River). An adaptive management design should address these questions to reduce uncertainty in predictions of drawdown effects and help determine if different implementation strategies are needed in different parts of the system. Given that drawdowns will continue to be used as a management tool on the UMRS, we suggest that some drawdowns be conducted in an adaptive management context that helps meet management objectives, but also provides efficient learning about the questions listed above. We propose two different, but interrelated, experimental designs to address these questions. Both designs call for conducting multiple drawdowns in multiple pools (2-4 pools) to allow direct comparison of results and produce rapid learning. However, the report does not provide a detailed scope of work for carrying out the designs. If managers choose to implement one of the experimental designs, specifics of choosing appropriate pools and developing a monitoring plan will need to be determined through collaboration among managers, researchers, and statisticians. We suggest characteristics to consider in selecting treatment and reference pools (study sites) and also provide guidance for developing a monitoring plan. Some aspects of these two designs could be implemented individually, but by implementing individual elements, direct comparisons of some design features

Illinois;Iowa;Minnesota;Missouri;Wisconsin

A brief history and summary of the effects of river engineering and dams on the Mississippi River system and delta

The U.S. Geological Survey Forecast Mekong project is providing technical assistance and information to aid management decisions and build science capacity of institutions in the Mekong River Basin. A component of this effort is to produce a synthesis of the effects of dams and other engineering structures on large-river hydrology, sediment transport, geomorphology, ecology, water quality, and deltaic systems. The Mississippi River Basin (MRB) of the United States was used as the backdrop and context for this synthesis because it is a continental scale river system with a total annual water discharge proportional to the Mekong River, has been highly engineered over the past two centuries, and the effects of engineering have been widely studied and documented by scientists and engineers. The MRB is controlled and regulated by dams and river-engineering structures. These modifications have resulted in multiple benefits including navigation, flood control, hydropower, bank stabilization, and recreation. Dams and other river-engineering structures in the MRB have afforded the United States substantial socioeconomic benefits; however, these benefits also have transformed the hydrologic, sediment transport, geomorphic, water-quality, and ecologic characteristics of the river and its delta. Large dams on the middle Missouri River have substantially reduced the magnitude of peak floods, increased base discharges, and reduced the overall variability of intraannual discharges. The extensive system of levees and wing dikes throughout the MRB, although providing protection from intermediate magnitude floods, have reduced overall channel capacity and increased flood stage by up to 4 meters for higher magnitude floods. Prior to major river engineering, the estimated average annual sediment yield of the Mississippi River Basin was approximately 400 million metric tons. The construction of large main-channel reservoirs on the Missouri and Arkansas Rivers, sedimentation in dike fields, and protection of channel banks by revetments throughout the basin, have reduced the overall sediment yield of the MRB by more than 60 percent. The primary alterations to channel morphology by dams and other engineering projects have been (1) channel simplification and reduced dynamism; (2) lowering of channel-bed elevation; and (3) disconnection of the river channel from the flood plain, except during extreme flood events. Freshwater discharge from the Mississippi River and its associated sediment and nutrient loads strongly influence the physical and biological components in the northern Gulf of Mexico. Ninety percent of the nitrogen load reaching the Gulf of Mexico is from nonpoint sources with about 60 percent coming from fertilizer and mineralized soil nitrogen. Much of the phosphorus is from animal manure from pasture and rangelands followed by fertilizer applied to corn and soybeans. Increased nutrient enrichment in the northern Gulf of Mexico has resulted in the degradation of water quality as more phytoplankton grow, which increases turbidity and depletes oxygen in the lower depths creating what is known as the "dead zone." In 2002, the dead zone was 22,000 square kilometers (km2), an area similar to the size of the State of Massachusetts. Changes in the flow regime from engineered structures have had direct and indirect effects on the fish communities. The navigation pools in the upper Mississippi River have aged, and these overwintering habitats, which were created when the pools filled, have declined as sedimentation reduces water depth. Reproduction of paddlefish may have been adversely affected by dams, which impede access to suitable spawning habitats. Fishes that inhabit swift-current habitats in the unimpounded lower Mississippi River have not declined as much as in the upper Mississippi River. The decline of the pallid sturgeon may be attributable to channelization of the Missouri River above St. Louis, Missouri. The Missouri River supports a rich fish community and remains relatively intact. Nevertheless, the widespread and long history of human intervention in river discharge has contributed to the declines of about 25 percent of the species. The Mississippi River Delta Plain is built from six delta complexes composed of a massive area of coastal wetlands that support the largest commercial fishery in the conterminous United States. Since the early 20th century, approximately 4,900 km2 of coastal lands have been lost in Louisiana. One of the primary mechanisms of wetland loss on the Plaquemines-Balize complex is believed to be the disconnection of the river distributary network from the delta plain by the massive system of levees on the delta top, which prevent overbank flooding and replenishment of the delta top by sediment and nutrient deliveries. Efforts by Federal and State agencies to conserve and restore the Mississippi River Delta Plain began over three decades ago and have accelerated over the past decade. Regardless of these efforts, however, land losses are expected to continue because the reduced upstream sediment supplies are not sufficient to keep up with the projected depositional space being created by the combined forces of delta plain subsidence and global sea-level rise.

Alabama;Alberta;Arkansas;Colorado;Georgia;Illinois

Network connectivity contributes to native small-bodied fish assemblages in the upper Mississippi River system

Effective management and conservation of fishes requires understanding habitat use across multiple life stages while ensuring necessary habitats are both available and accessible. Tributary habitats may play an important role in recruitment and dispersal of fishes in anthropogenically modified rivers such as the Mississippi and Illinois Rivers of the Midwest U.S.A. Identifying source locations that contribute to recruitment of fish populations can determine the importance of connectivity within river networks and pinpoint critical habitats that sustain fish populations. In the Upper Mississippi River System (UMRS), the environments that fish use in early life stages (i.e., natal origin) can be identified using otolith trace element analysis due to stability and distinctness in water chemistry (strontium: calcium [Sr:Ca]) among water bodies that is reflected in otoliths. Here, we used trace element analysis to determine natal origin of six small-bodied fishes including bullhead minnow ( Pimephales vigilax ), emerald shiner ( Notropis atherinoides ), gizzard shad ( Dorosoma cepedianum ), bluegill ( Lepomis macrochirus ), orangespotted sunfish ( Lepomis humilis ), and yellow perch ( Perca flavescens ) across six reaches of the UMRS (Pools 4, 8, 13, 26, the Open River of the Middle Mississippi River, and the La Grange Pool of the Illinois River). Otolith core Sr:Ca for fishes was quantified using laser ablation inductively coupled plasma mass spectrometry. Using the resulting Sr:Ca chemical signatures of otolith cores, natal origin (tributary, immigrant, or potential resident) was determined for individual fish based on family-specific relationships between otolith and water chemistries. We found that all species originated from tributaries and other reaches (i.e., were immigrants) to varying extents, which acted as evidence for network connectivity. Specifically, tributaries contributed up to 48% of individuals at a given reach. In certain reaches, Pool 26 and the Open River reach, up to 80% of individuals in a species immigrated from another mainstem river reach. Network connectivity was also important in both upstream and downstream directions. Contributions from network connectivity varied among species: bullhead minnow used less whereas orangespotted sunfish used more network connectivity than when all species were combined. Further, the use of network connectivity varied spatially where individuals captured in Pool 8 and the La Grange Pool less often and those from Pool 26 and the Open River more often originated from network connectivity compared to the whole assemblage across reaches. These results indicate that species' life history traits probably interacted with the physical environment, which differs spatially, to yield observed recruitment source patterns. Our results show that network connectivity contributes to established assemblages of native small-bodied fishes throughout the UMRS and underscore the role of interjurisdictional management in maintaining network connectivity to sustain fish populations.

Illinois, Iowa, Minnesota, Missouri, Wisconsin

A structured approach to remediation site assessment: Lessons from 15 years of fish spawning habitat creation in the St. Clair‐Detroit River system

Ideally, restoration re‐establishes natural processes in degraded habitats (e.g., flow and sediment regimes). However, in altered systems where process‐based restoration is not feasible, habitat construction is another approach to mitigate degradation. Because habitat construction does not directly focus on restoring processes that build and maintain desired habitats, projects must be developed and placed within the contemporary regulatory, ecological, and hydrogeomorphic context of a system, to maximize effectiveness. Here, we develop a framework for evaluating the regulatory, ecological, and hydrogeomorphic components using 15 years of fish spawning habitat construction in the St. Clair‐Detroit River System. The process began by identifying regulatory requirements at a coarse resolution to quickly focus on locations where ecological potential and hydrogeomorphic constraints could be assessed at finer resolutions. Next, ecological potential was assessed using a lithophilic fish spawning habitat suitability index. The suitability index identified five sites for habitat construction and Lake sturgeon spawning was documented at each site following construction. However, qualitative monitoring showed fine sediments accumulated at older sites. Thus, geomorphic assessments were incorporated to identify sediment sources and model flow within targeted areas. Since geomorphic assessments required the finest resolution and had the most uncertainty, they were conducted after broad‐scale regulatory considerations and ecological assessments narrowed focus to a few candidate sites. The order of operations identified in this case study evolved from the iterative approach of the restoration team, but in retrospect, it helped develop a framework that directed project development resources to aspects with more uncertainty, where learning is most critical.

Michigan, Ontario

Rainbow trout movement behavior and habitat occupancy are influenced by sex and Pacific salmon presence in an Alaska river system

We used spatially continuous field-measured and remotely-sensed aquatic habitat characteristics paired with weekly ground-based telemetry tracking and snorkel surveys to describe movements and habitat occupancy of adult rainbow trout (N = 82) in a runoff-fed, salmon-influenced southcentral Alaska river system. We found that during the ice-free feeding season (June through September) rainbow trout occurrence was associated more with fine-scale (channel unit) characteristics relative to coarse-scale (stream reach) variables. The presence of Pacific salmon (which provide an important seasonal food subsidy), and habitat size were particularly useful predictors. Weekly movement distance differed between pre- and post- spawning salmon arrival, but did not vary by sex. Habitat quality, season, and the arrival of spawning salmon influenced the likelihood of rainbow trout movement, and fish moved farther to seek out higher quality habitats. Because rainbow trout respond to habitat factors at multiple scales and seek out salmon-derived subsidies, it will be important to take a multiscale approach in protecting trout and salmon populations and managing the associated fisheries.

Canadian Journal of Fisheries and Aquatic Sciences

Lake sturgeon population trends in the St. Clair–Detroit River System, 2001–2019

Lake Sturgeon Acipenser fulvescens are listed as threatened or endangered in 15 states or provinces within their native range. Accordingly, investments in habitat and population restoration for this species have increased throughout the Great Lakes. To aide evaluation of restoration efficacy, robust population parameters are needed to inform management decisions. The St. Clair – Detroit River System (SCDRS) contains one of the largest self-sustaining Lake Sturgeon populations in the Great Lakes; however recent estimates of population abundance and growth parameters have not been assessed. Our study used baited setline and mark-recapture data collected between 2001 – 2019 to estimate whether the number of Lake Sturgeon captured varied annually and/or with water temperature and whether population abundance and population growth rate varied among three sub-populations located in the SCDRS. Trends in the number of Lake Sturgeon captured on setlines varied among sub-populations and by life stage. Annual trends in the number of Lake Sturgeon captured remained consistent over time in the upper St. Clair River, decreased for adults and increased for subadults in the lower St. Clair River, and increased in the Detroit River. With sub-population abundance of 20,184 (95% CI = 12,533 – 27,816) in the upper St. Clair River/southern Lake Huron, 6,523 (95% CI = 5,720 – 7,327) in the lower St. Clair River, and 6,416 (95% CI = 4,065 – 8,767) in the Detroit River, our study confirms that the SCDRS contains the largest Lake Sturgeon population with unimpeded access to the Great Lakes. The geometric mean population growth rate ( λ ) for all sub-populations indicated stable populations and ranged from 1.00 – 1.16. Our study provides an updated assessment of Lake Sturgeon population parameters that serve as a baseline to evaluate habitat restoration efforts and inform management of the SCDRS recreational Lake Sturgeon fishery.

Michigan, Ontario

Gulf sturgeon spawning migration and habitat in the Choctawhatchee River system, Alabama-Florida

Information about spawning migration and spawning habitat is essential to maintain and ultimately restore populations of endangered and threatened species of anadromous fish. We used ultrasonic and radiotelemetry to monitor the movements of 35 adult Gulf sturgeon Acipenser oxyrinchus desotoi (a subspecies of the Atlantic sturgeon A. oxyrinchus ) as they moved between Choctawhatchee Bay and the Choctawhatchee River system during the spring of 1996 and 1997. Histological analysis of gonadal biopsies was used to determine the sex and reproductive status of individuals. Telemetry results and egg sampling were used to identify Gulf sturgeon spawning sites and to examine the roles that sex and reproductive status play in migratory behavior. Fertilized Gulf sturgeon eggs were collected in six locations in both the upper Choctawhatchee and Pea rivers. Hard bottom substrate, steep banks, and relatively high flows characterized collection sites. Ripe Gulf sturgeon occupied these spawning areas from late March through early May, which included the interval when Gulf sturgeon eggs were collected. For both sexes, ripe fish entered the Choctawhatchee River significantly earlier and at a lower water temperature and migrated further upstream than did nonripe fish. Males entered the Choctawhatchee River at a lower water temperature than females. Results from histology and telemetry support the hypothesis that male Gulf sturgeon may spawn annually, whereas females require more than 1 year between spawning events. Upper river hard bottom areas appear important for the successful spawning of Gulf sturgeon, and care should be taken to protect against habitat loss or degradation of known spawning habitat.

Alabama, Florida

Identification of isopropylbiphenyl, alkyl diphenylmethanes, diisopropylnaphthalene, linear alkyl benzenes and other polychlorinated biphenyl replacement compounds in effluents, sediments and fish in the Fox River System, Wisconsin

Five polychlorinated biphenyl replacement dye solvents and a diluent present in carbonless copy paper were identified by gas chromatography/mass spectrometry in the following matrices: effluents from a de-inking–recycling paper mill and a municipal wastewater treatment plant receiving wastewaters from a carbonless copy paper manufacturing plant; sediments; and fish collected near both discharges in the Fox River System, Wisconsin. An isopropylbiphenyl dye solvent mixture included mono-, di- and triisopropylbiphenyls. Also identified were two dye solvent mixtures marketed under the trade name Santosol. Santosol 100 comprised ethyl-diphenylmethanes (DPMs), benzyl-ethyl-DPMs, and dibenzyl-ethyl-DPMs. Similarly, Santosol 150 comprised dimethyl-DPMs, benzyl-dimethyl-DPMs, and dibenzyl-dimethyl-DPMs. Diisopropylnaphthalenes, widely used as a dye solvent in Japan, were identified for the first time in the US environment. sec -Butylbiphenyls and di- sec -butylbiphenyls, likely constituents of a sec -butylbiphenyl dye solvent mixture, were tentatively identified. Linear alkyl benzenes (C 10 to C 13 -LABs) constituted the Alkylate 215 diluent mixture. Although known to occur as minor constituents in linear alkyl sulfonate detergents, LAB residues have not been previously attributed to commercial use of LABs.

Wisconsin

Benefits of prescribed flows for salmon smolt survival enhancement vary longitudinally in a highly managed river system

The influence of streamflow on survival of emigrating juvenile Pacific salmonids Oncorhynchus spp. (smolts) is a major concern for water managers throughout the northeast Pacific Rim. However, few studies have quantified flow effects on smolt survival, and available information does not indicate a consistent flow–survival relationship within the typical range of flows under management control. In the Yakima Basin, Washington, the potential effects of streamflow alterations on smolt survival have been debated for over 20 years. Using a series of controlled flow releases from upper basin reservoirs and radiotelemetry, we quantified the relationship between flow and yearling Chinook salmon smolt survival in the 208 km reach between Roza Dam and the Yakima River mouth. A multistate mark–recapture model accounted for weekly variation in flow conditions experienced by tagged fish in four discrete river segments. Smolt survival was significantly associated with streamflow in the Roza Reach [river kilometre (rkm) 208–189] and marginally associated with streamflow in the Sunnyside Reach (rkm 169–77). However, smolt survival was not significantly associated with flow in the Naches and Prosser Reaches (rkm 189–169 and rkm 77–3). This discrepancy indicates potential differences in underlying flow-related survival mechanisms, such as predation or passage impediments. Our results clarify trade-offs between flow augmentation for fisheries enhancement and other beneficial uses, and our study design provides a framework for resolving uncertainties about streamflow effects on migratory fish survival in other river systems.

Washington

Upper Mississippi River system weighted wind fetch analysis (1989, 2000, 2010/2011)

Wind fetch is defined as the unobstructed distance that wind can travel over water in a constant direction. Fetches are limited by landforms surrounding the body of water. Fetch is an important characteristic of open water because longer fetches can result in larger wind-generated waves. The larger waves, in turn, can increase shoreline erosion and sediment resuspension (Rohweder and others 2012). Increases in sediment resuspension lead to increases in water turbidity, which in turn decreases light penetration and, therefore, create conditions less conducive to aquatic plant growth (Giblin and others 2010). A wind fetch model was developed by David Finlayson, U. S. Geological Survey, Pacific Science Center, while he was a Ph.D. student at the University of Washington (Finlayson 2005). This method calculates effective fetch using the recommended procedure of the Shore Protection Manual (USACE 1984). Scientists at the United States Geological Survey, Upper Midwest Environmental Sciences Center (UMESC) and the United States Army Corps of Engineers (USACE) further refined this model (Rohweder and others 2012) and structured it to operate using the most recent version of the ArcMap Geographic Information System platform (Esri, 2019). At the time the analysis was performed, the version of ArcMap used was 10.7.1. The model refined in 2012 was used for the analyses described in this report. Using this model, UMESC performed an analysis to model weighted wind fetch for the Upper Mississippi River System (UMRS) corresponding to three separate time periods of land cover spatial data acquisition (1989, 2000, and 2010/2011). The purpose of the analysis was to examine how fetch varies over time and space within the UMRS for potential management applications. For more detailed information on the wind fetch model, examine the USGS Open-File Report by Rohweder and others (2012).

Illinois, Iowa, Minnesota, Missouri, Wisconsin

Automated lidar-derived canopy height estimates for the Upper Mississippi River System

Land cover/land use (LCU) classifications serve as important decision support products for researchers and land managers. The LCU classifications produced by the U.S. Geological Survey’s Upper Midwest Environmental Sciences Center (UMESC) include canopy height estimates that are assigned through manual aerial photography interpretation techniques. In an effort to improve upon these techniques, this project investigated the use of high-density lidar data for the Upper Mississippi River System to determine canopy height. An ArcGIS tool was developed to automatically derive height modifier information based on the extent of land cover features for forest classes. The measurement of canopy height included a calculation of the average height from lidar point cloud data as well as the inclusion of a local maximum filter to identify individual tree canopies. Results were compared to original manually interpreted height modifiers and to field survey data from U.S. Forest Service Forest Inventory and Analysis plots. This project demonstrated the effectiveness of utilizing lidar data to more efficiently assign height modifier attributes to LCU classifications produced by the UMESC.

Minnesota, Wisconsin

Individual based modelling of fish migration in a 2-D river system: Model description and case study

Context: Diadromous fish populations in the Pacific Northwest face challenges along their migratory routes from declining habitat quality, harvest, and barriers to longitudinal connectivity. These stressors complicate the prioritization of proposed management actions intended to improve conditions for migratory fishes including anadromous salmon and trout. Objectives: We describe a multi-scale hybrid mechanistic–probabilistic simulation model linking migration corridor conditions to fish fitness outcomes. We demonstrate the model’s utility using a case study of salmon and steelhead adults in the Columbia River migration corridor exposed to spatially- and temporally-varying stressors. Methods: The migration corridor simulation model is based on a behavioral decision tree that governs individual interactions with the environment, and an energetic submodel that estimates the hourly costs of migration. Emergent properties of the migration corridor simulation model include passage time, energy use, and survival. Results: We observed that the simulated fish’s initial energy density, the migration corridor temperatures they experienced, and their history of behavioral thermoregulation were the primary determinants of their fitness outcomes. Insights gained from use of the model might be exploited to identify management interventions that increase successful migration outcomes. Conclusions: This paper describes new methods that extend the suite of tools available to aquatic biologists and conservation practitioners. We have developed a 2-dimensional spatially-explicit behavioral and physiological model and illustrated how it can be used to simulate fish migration within a river system. Our model can be used to evaluate trade-offs between behavioral thermoregulation and fish fitness at population scales.

Landscape Ecology