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Book review: Natural resources in Afghanistan: Geographic and geologic perspectives on centuries of conflict

This book is the outcome of four decades of work in Afghanistan by the author, John (Jack) Shroder. His travels and research throughout Afghanistan and his understanding of its place in regional and world history provide the foundation for this comprehensive 572-page reference. The book describes the interrelated nature of Afghanistan’s physical and political landscape over time and the role resources have, and have not, played in Afghanistan’s past and could play in its future. Review info: Natural resources in Afghanistan: Geographic and geologic perspectives on centuries of conflict by John F. Shroder, 2014. ISBN 978-01280013356, 572 pp.

Economic Geology

Diel cycling of trace elements in streams draining mineralized areas: a review

Many trace elements exhibit persistent diel, or 24-h, concentration cycles in streams draining mineralized areas. These cycles can be caused by various physical and biogeochemical mechanisms including streamflow variation, photosynthesis and respiration, as well as reactions involving photochemistry, adsorption and desorption, mineral precipitation and dissolution, and plant assimilation. Iron is the primary trace element that exhibits diel cycling in acidic streams. In contrast, many cationic and anionic trace elements exhibit diel cycling in near-neutral and alkaline streams. Maximum reported changes in concentration for these diel cycles have been as much as a factor of 10 (988% change in Zn concentration over a 24-h period). Thus, monitoring and scientific studies must account for diel trace-element cycling to ensure that water-quality data collected in streams appropriately represent the conditions intended to be studied.

Applied Geochemistry

Fecal indicator organism modeling and microbial source tracking in environmental waters: Chapter 3.4.6

Mathematical models have been widely applied to surface waters to estimate rates of settling, resuspension, flow, dispersion, and advection in order to calculate movement of particles that influence water quality. Of particular interest are the movement, survival, and persistence of microbial pathogens or their surrogates, which may contaminate recreational water, drinking water, or shellfish. Most models devoted to microbial water quality have been focused on fecal indicator organisms (FIO), which act as a surrogate for pathogens and viruses. Process-based modeling and statistical modeling have been used to track contamination events to source and to predict future events. The use of these two types of models require different levels of expertise and input; process-based models rely on theoretical physical constructs to explain present conditions and biological distribution while data-based, statistical models use extant paired data to do the same. The selection of the appropriate model and interpretation of results is critical to proper use of these tools in microbial source tracking. Integration of the modeling approaches could provide insight for tracking and predicting contamination events in real time. A review of modeling efforts reveals that process-based modeling has great promise for microbial source tracking efforts; further, combining the understanding of physical processes influencing FIO contamination developed with process-based models and molecular characterization of the population by gene-based (i.e., biological) or chemical markers may be an effective approach for locating sources and remediating contamination in order to protect human health better.

Book chapter

Geological constraints on the mechanisms of slow earthquakes

The recognition of slow earthquakes in geodetic and seismological data has transformed the understanding of how plate motions are accommodated at major plate boundaries. Slow earthquakes, which slip more slowly than regular earthquakes but faster than plate motion velocities, occur in a range of tectonic and metamorphic settings. They exhibit spatiotemporal associations with large seismic events that indicate a causal relation between modes of slip at different slip rates. Defining the physical controls on slow earthquakes is, therefore, critical for understanding fault and shear zone mechanics. In this Review, we synthesize geological observations of a suite of ancient structures that were active in tectonic settings comparable to where slow earthquakes are observed today. At inferred slow earthquake regions, a range of grain-scale deformation mechanisms accommodated slip at low effective stresses. Material heterogeneity and the geometric complexity of structures that formed at different inferred strain rates are common to faults and shear zones in multiple tectonic environments, and might represent key limiting factors of slow earthquake slip rates. Further geological work is needed to resolve how the spectrum of slow earthquake slip rates can arise from different grain-scale deformation mechanisms and whether there is one universal rate-limiting mechanism that defines slow earthquake slip.

Nature Reviews Earth and Environment

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.

Frontiers in Environmental Science

Analysis of high-resolution single channel seismic data for use in sediment resource evaluation, eastern Texas and western Louisiana Continental Shelf, Gulf of Mexico

Shallow subsurface geologic data recorded as high-resolution seismic profiles are used to interpret the geology of coastal and marine systems. These data were originally recorded on paper rolls that are stored in geophysical archives. Data collection has since converted to entirely digital formats, yet the analog data are still useful for geologic interpretation. This report describes the process of recovering analog copies of seismic profiles from physical archives, electronically scanning, and converting them to industry-standard digital format. The recovered data are also reviewed and assessed for potential sediment resources. The data recovered in this study were collected from the Gulf of Mexico continental shelf offshore of East Texas and West Louisiana. The project is a collaborative study between the U.S. Geological Survey and the Bureau of Ocean Energy Management.

Louisiana, Texas

Passive seismic monitoring of natural and induced earthquakes: Case studies, future directions and socio-economic relevance

An important discovery in crustal mechanics has been that the Earth’s crust is commonly stressed close to failure, even in tectonically quiet areas. As a result, small natural or man-made perturbations to the local stress field may trigger earthquakes. To understand these processes, Passive Seismic Monitoring (PSM) with seismometer arrays is a widely used technique that has been successfully applied to study seismicity at different magnitude levels ranging from acoustic emissions generated in the laboratory under controlled conditions, to seismicity induced by hydraulic stimulations in geological reservoirs, and up to great earthquakes occurring along plate boundaries. In all these environments the appropriate deployment of seismic sensors, i.e., directly on the rock sample, at the earth’s surface or in boreholes close to the seismic sources allows for the detection and location of brittle failure processes at sufficiently low magnitude-detection threshold and with adequate spatial resolution for further analysis. One principal aim is to develop an improved understanding of the physical processes occurring at the seismic source and their relationship to the host geologic environment. In this paper we review selected case studies and future directions of PSM efforts across a wide range of scales and environments. These include induced failure within small rock samples, hydrocarbon reservoirs, and natural seismicity at convergent and transform plate boundaries. Each example represents a milestone with regard to bridging the gap between laboratory-scale experiments under controlled boundary conditions and large-scale field studies. The common motivation for all studies is to refine the understanding of how earthquakes nucleate, how they proceed and how they interact in space and time. This is of special relevance at the larger end of the magnitude scale, i.e., for large devastating earthquakes due to their severe socio-economic impact.

Book chapter

Predicting broad-scale occurrences of vertebrates in patchy landscapes

Spatially explicit landscape-scale models that predict species distributions, where patches of habitat are shown as having potential to be occupied or unoccupied, are increasingly common. To successfully use such data, one should understand how these predicted distributions are created and how their relative accuracies are assessed. Geographic ranges, defined upon observations (e.g., atlases), literature review, and expert review, are a primary data layer. A map of land cover is created, often from interpretation of satellite imagery or other remotely-sensed data. Species/habitat associations are defined based upon a literature review and expert review, describing associations for habitats derived from the cover map. Included as ancillary associations are how species relate to physical features, where appropriate, such as elevation and hydrography. The three layers of information (range, land cover, and associations) are merged, often using raster-based algebraic statements that exclude unused habitats or patches outside the range of a species. The accuracy of predictions for a suite of species is typically assessed with surveys by comparing the species predicted to occur in an area to the species observed. Omission (i.e., present in species lists but not predicted) and commission (i.e., predicted but not present in lists) errors are reported. Errors may be due to many sources. For example, ranges of species change, cover types may be misidentified, species/habitat associations may be incorrect or change, or species may be rare and unlikely to be seen in surveys and judged in-error even though the species may be present. An example is given of an appropriate use of broad-scale species predicted distributions, in which patterns and threats to Maine terrestrial vertebrate diversity are summarized.

Landscape Ecology

Evaluating coexistence of fish species with coastal cutthroat trout in low order streams of western Oregon and Washington, USA

When multiple species of fish coexist there are a host of potential ways through which they may interact, yet there is often a strong focus on studies of single species without considering these interactions. For example, many studies of forestry–stream interactions in the Pacific Northwest have focused solely on the most prevalent species: Coastal cutthroat trout. To examine the potential for interactions of other fishes with coastal cutthroat trout, we conducted an analysis of 281 sites in low order streams located on Washington’s Olympic Peninsula and along the central Oregon coast. Coastal cutthroat trout and juvenile coho salmon were the most commonly found salmonid species within these streams and exhibited positive associations with each other for both presence and density. Steelhead were negatively associated with the presence of coastal cutthroat trout as well as with coho salmon and sculpins (Cottidae). Coastal cutthroat trout most frequently shared streams with juvenile coho salmon. For densities of these co-occurring species, associations between these two species were relatively weak compared to the strong influences of physical stream conditions (size and gradient), suggesting that physical conditions may have more of an influence on density than species interactions. Collectively, our analysis, along with a review of findings from prior field and laboratory studies, suggests that the net effect of interactions between coastal cutthroat trout and coho salmon do not appear to inhibit their presence or densities in small streams along the Pacific Northwest.

Washington

Environmental influences on the occurrences of sepiolite and palygorskite: a brief review

Sepiolite is a hydrous magnesium silicate formed by precipitation of near-surface brackish or saline waters, under semi-arid climatic conditions. Four major influences on the distribution of sepiolite are source materials, climate, physical parameters and associated phase relations. Two major pathways governing the occurrence of sepiolite and palygorskite are direct precipitation from solution, and the transformation of precursor phases by dissolution–precipitation. Sepiolite is most commonly found as a result of the former process, whereas palygorskite is often characterized as a product of the latter. Thus, sepiolite typically occurs in lacustrine, often saline, strata, while palygorskite is commonly found in conjunction with soils, alluvium, or most abundantly, calcretes. Here, we review briefly some examples of sepiolite deposits in Spain, Turkey, Argentina, USA, and the African countries of Kenya, Morocco, Tunisia, Senegal, Somalia and South Africa.

Book chapter

Synchrotron x-ray spectroscopy of EuHN O3 aqueous solutions at high temperatures and pressures and Nb-bearing silicate melt phases coexisting with hydrothermal fluids using a modified hydrothermal diamond anvil cell and rail assembly

A modified hydrothermal diamond anvil cell (HDAC) rail assembly has been constructed for making synchrotron x-ray absorption spectroscopy, x-ray fluorescence, and x-ray mapping measurements on fluids or solid phases in contact with hydrothermal fluids up to ???900??C and 700 MPa. The diamond anvils of the HDAC are modified by laser milling grooves or holes, for the reduction of attenuation of incident and fluorescent x rays and sample cavities. The modified HDAC rail assembly has flexibility in design for measurement of light elements at low concentrations or heavy elements at trace levels in the sample and the capability to probe minute individual phases of a multiphase fluid-based system using focused x-ray microbeam. The supporting rail allows for uniform translation of the HDAC, rotation and tilt stages, and a focusing mirror, which is used to illuminate the sample for visual observation using a microscope, relative to the direction of the incident x-ray beam. A structure study of Eu(III) aqua ion behavior in high-temperature aqueous solutions and a study of Nb partitioning and coordination in a silicate melt in contact with a hydrothermal fluid are described as applications utilizing the modified HDAC rail assembly. ?? 2007 American Institute of Physics.

Review of Scientific Instruments

Magnetic monitoring of earth and space

For centuries, navigators of the world’s oceans have been familiar with an effect of Earth’s magnetic field: It imparts a directional preference to the needle of a compass. Although in some settings magnetic orientation remains important, the modern science of geomagnetismhas emerged from its romantic nautical origins and developed into a subject of great depth and diversity. The geomagnetic field is used to explore the dynamics of Earth’s interior and its surrounding space environment, and geomagnetic data are used for geophysical mapping, mineral exploration, risk mitigation, and other practical applications. A global distribution of ground-based magnetic observatories supports those pursuits by providing accurate records of the magnetic-field direction and intensity at fixed locations and over long periods of time. Magnetic observatories were first established in the early 19th century in response to the influence of Alexander von Humboldt and Carl Friedrich Gauss. Since then, magnetic measurement has advanced significantly, progressing from simple visual readings of magnetic survey instruments to include automatic photographic measurement and modern electronic acquisition. To satisfy the needs of the scientific community, observatories are being upgraded to collect data that meet ever more stringent standards, to achieve higher acquisition frequencies, and to disseminate data in real time. To appreciate why data from magnetic observatories can be used for so many purposes, one needs only to recall that the geomagnetic field is a continuum, connecting the different parts of Earth to each other and to nearby space. Beneath our feet and above our heads, electric currents generate magnetic fields that contribute to the totality of the geomagnetic field measured at an observatory on Earth’s surface. The many physical processes that operate in each geophysical domain give rise to a complicated field that exhibits a wide variety of time-dependent behavior. In this article I review the status of the global community of magnetic observatories, show how Earth and space can be monitored for purposes of scientific understanding and practical application, and highlight the role played by magnetic observatories in the history of geomagnetism research.

Physics Today

Challenges and opportunities for national-scale projections of future coastal landscape change

Local to global scale projections of future coastal landscape change are essential to improve land and resource management decisions that aim to prepare for and reduce risk exposure to impending coastal hazards. However, the availability of actionable knowledge is often limited due to the complexity of drivers of change, their consequences, and uncertainties that span disciplines. Varying spatial and temporal scales of physical processes that occur on landscapes with differing levels of coastal development and modification complicate decision-making. This paper reviews advances in observational approaches, modeling, and quantification of uncertainty to support the next generation of coastal change projections. We also highlight transdisciplinary opportunities for making this information more accessible and useful to support decision-making in the coastal zone. This includes consideration of different levels of user engagement to address specific needs, as well as resources and mechanisms that can support knowledge transfer broadly. A central recommendation is the development of a coordinated framework to support research integration including three components: accounting for relevant drivers, processes, and feedbacks; working with users to identify their information needs; and generating meaningful projections and uncertainty. Actions that would support such frameworks include the evaluation of models through coordinated research approaches and multi-model comparisons; ongoing investments in observations and data-driven approaches necessary to understand this complex environment; expansion of modeling capabilities using novel techniques; prioritization of co-development efforts between researchers and users; and continued training and support for transdisciplinary research.

Alaska, California, Florida, New York

Five-year external reviews of the eight Department of Interior Climate Science Centers: Southeast Climate Science Center

In 2008, the U.S. Congress authorized the establishment of the National Climate Change and Wildlife Science Center (NCCWSC) within the U.S. Department of Interior (DOI). Housed administratively within the U.S. Geological Survey (USGS), NCCWSC is part of the DOI’s ongoing mission to meet the challenges of climate change and its effects on wildlife and aquatic resources. From 2010 through 2012, NCCWSC established eight regional DOI Climate Science Centers (CSCs). Each of these regional CSCs operated with the mission to “synthesize and integrate climate change impact data and develop tools that the Department’s managers and partners can use when managing the Department’s land, water, fish and wildlife, and cultural heritage resources” (Salazar 2009). The model developed by NCCWSC for the regional CSCs employed a dual approach of a federal USGS-staffed component and a parallel host-university component established competitively through a 5-year cooperative agreement with NCCWSC. At the conclusion of this 5-year agreement, a review of each CSC was undertaken, with the Southeast Climate Science Center (SE CSC) review in February 2016. The SE CSC is hosted by North Carolina State University (NCSU) in Raleigh, North Carolina, and is physically housed within the NCSU Department of Applied Ecology along with the Center for Applied Aquatic Ecology, the North Carolina Cooperative Fish and Wildlife Research Unit (CFWRU), and the North Carolina Agromedicine Institute. The U.S. Department of Agriculture Southeast Regional Climate Hub is based at NCSU as is the National Oceanic and Atmospheric Administration (NOAA) Southeast Regional Climate Center, the North Carolina Institute for Climate Studies, the North Carolina Wildlife Resources Commission, the NOAA National Weather Service, the State Climate Office of North Carolina, and the U.S. Forest Service Eastern Forest Environmental Threat Assessment Center. This creates a strong core of organizations operating in close proximity focused on climate issues. The geographic area covered by the SE CSC represents all or part of 16 states and the Caribbean Islands and has overlapping boundaries with seven Landscape Conservation Cooperatives (LCCs): Appalachian LCC, Eastern Tallgrass Prairie and Big Rivers LCC, Gulf Coast Prairie LCC, Gulf Coastal Plains and Ozarks LCC, Peninsular Florida LCC, South Atlantic LCC, and Caribbean LCC. The SE CSC region also encompasses 134 U.S. Fish and Wildlife Service refuges and 89 National Park Service (NPS) units and is home to 11 federally recognized and 54 state recognized tribes.

Report

Factors influencing predation on juvenile ungulates and natural selection implications

Juvenile ungulates are generally more vulnerable to predation than are adult ungulates other than senescent individuals, not only because of their relative youth, fragility, and inexperience, but also because of congenital factors. Linnell et al.'s (Wildl. Biol. 1: 209-223) extensive review of predation on juvenile ungulates concluded that research was needed to determine the predisposition of these juveniles to predation. Since then, various characteristics that potentially predispose juvenile ungulates have emerged including blood characteristics, morphometric and other condition factors, and other factors such as birth period, the mother’s experience, and spatial and habitat aspects. To the extent that any of the physical or behavioral traits possessed by juvenile ungulates have a genetic or heritable and partly independent epigenetic component that predisposes them to predation, predators may play an important role in their natural selection. We review the possible influence of these characteristics on predisposing juvenile ungulates to predation and discuss natural selection implications and potential selection mechanisms. Although juvenile ungulates as a class are likely more vulnerable to predation than all but senescent adults, our review presents studies indicating that juveniles with certain tendencies or traits are killed more often than others. This finding suggests that successful predation on juveniles is more selective than is often assumed. Because we are unable to control for (or in some cases even measure) the myriad of other possible vulnerabilities such as differences in sensory abilities, intelligence, hiding abilities, tendency to travel, etc., finding selective predation based on the relatively few differences we can measure is noteworthy and points to the significant role that predation on juveniles has in the natural selection of ungulates. Future research should compare characteristics, especially those known to influence survival, between animals killed by predators versus those killed by other sources as well as survivors versus non-survivors to better understand predation's role in natural selection.

Wildlife Biology in Practice

Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan

Attempts to mitigate shoreline microbial contamination require a thorough understanding of pollutant sources, which often requires multiple years of data collection (e.g., point/nonpoint) and the interacting factors that influence water quality. Because restoration efforts can alter shoreline or beach morphology, revisiting source inputs is often necessary. Microbial source tracking (MST) using source-specific molecular markers, genomic community analyses, and physical modeling was used to identify contamination sources along three Lake Michigan beaches of the Laurentian Great Lakes with historically high fecal indicator bacteria (FIB, E. coli ) concentrations. Genetic markers for human (Bacteroides HF183) and mixed gull species ( Catellicoccus marimammalium ) fecal sources were tested from water and sediment. Gene sequencing (16S rRNA) was used to identify similarities in bacterial communities in nearshore water, river inputs, sand, sediment, and groundwater. Synoptic surveys of water exchange were conducted to determine nearshore-offshore interactions of FIB. In addition to these MST studies, best management practices to mitigate FIB, including gull deterrence, slope grading, wetland establishment, and shoreline plantings, were reviewed for their effectiveness at reducing FIB concentrations over time. Using multiple tools for MST helped identify primary and secondary sources of FIB (gulls, stormwater inputs) and the physical processes that exacerbate FIB concentrations (onshore currents, limited circulation). Management actions were successful in the short-term at reducing FIB, but scope of success was temporally limited, with FIB concentrations often rebounding. Results highlight the usefulness of MST to inform best management practices and the need for a sustained adaptive approach that adjusts for changes in the coastal system.

Illinois, Wisconsin

Chapter two: Phenomenology of tsunamis II: Scaling, event statistics, and inter-event triggering

Observations related to tsunami catalogs are reviewed and described in a phenomenological framework. An examination of scaling relationships between earthquake size (as expressed by scalar seismic moment and mean slip) and tsunami size (as expressed by mean and maximum local run-up and maximum far-field amplitude) indicates that scaling is significant at the 95% confidence level, although there is uncertainty in how well earthquake size can predict tsunami size (R 2 ~ 0.4-0.6). In examining tsunami event statistics, current methods used to estimate the size distribution of earthquakes and landslides and the inter-event time distribution of earthquakes are first reviewed. These methods are adapted to estimate the size and inter-event distribution of tsunamis at a particular recording station. Using a modified Pareto size distribution, the best-fit power-law exponents of tsunamis recorded at nine Pacific tide-gauge stations exhibit marked variation, in contrast to the approximately constant power-law exponent for inter-plate thrust earthquakes. With regard to the inter-event time distribution, significant temporal clustering of tsunami sources is demonstrated. For tsunami sources occurring in close proximity to other sources in both space and time, a physical triggering mechanism, such as static stress transfer, is a likely cause for the anomalous clustering. Mechanisms of earthquake-to-earthquake and earthquake-to-landslide triggering are reviewed. Finally, a modification of statistical branching models developed for earthquake triggering is introduced to describe triggering among tsunami sources.

Advances in Geophysics

Intraspecific contact among white-tailed deer: A literature review and chronic wasting disease case study

White-tailed deer ( Odocoileus virginianus ) are a valuable game mammal in the eastern United States necessitating detailed understanding of disease transmission. We conducted a literature review on intraspecific contact (i.e., interactions wherein disease transmission may occur) among deer. From 69 studies, we identified five themes underlying research on intraspecific deer contact: physical touch, social groups, spatial overlap, association rates, and social networks. Visual observations determined physical touch to be infrequent (< 2 touches/h) and indicated deer social groups were dependent on spatial dynamics of parturition and dispersal; most females remained with matriarchal family groups while males dispersed and formed bachelor groups. Assessed using global positioning system (GPS) monitoring, spatial overlap and association rates (i.e., instances of deer in close spatial–temporal proximity) were higher in correspondence to within-group social dynamics, and between-group scores were correspondingly low. Social network analyses indicated between-group transmission may be driven by socially dominant males, often termed super-spreaders (i.e., hosts infecting disproportionately high numbers of healthy individuals). We investigated these themes via a case study of deer infected with chronic wasting disease (CWD) in southcentral Pennsylvania, United States. We assessed spatial overlap and association rates using GPS monitoring data from 180 deer. Our results supported findings in the literature, showing strong correlations among spatial overlap, association rates, and correlated movements. Further, CWD-infected deer exhibited similar association rates to deer in which CWD was not detected. Our literature review and case study indicate direct transmission of CWD and other diseases is likely greatest within social groups following seasonal behavioral dynamics and that between-group transmission is likely driven by males via dispersal and mating interactions. Our results may be used to inform population management models with future work focused on high resolution spatial assessments of transmission in localized areas.

Pennsylvania