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The aquatic real-time monitoring network; in-situ optical sensors for monitoring the nation's water quality

Floods, hurricanes, and longer-term changes in climate and land use can have profound effects on water quality due to shifts in hydrologic flow paths, water residence time, precipitation patterns, connectivity between rivers and uplands, and many other factors. In order to understand and respond to changes in hydrology and water quality, resource managers and policy makers have a need for accurate and early indicators, as well as the ability to assess possible mechanisms and likely outcomes. In-situ optical sensors-those making continuous measurements of constituents by absorbance or fluorescence properties in the environment at timescales of minutes to years-have a long history in oceanography for developing highly resolved concentrations and fluxes, but are not commonly used in freshwater systems. The United States Geological Survey (USGS) has developed the Aquatic Real-Time Monitoring Network, with high-resolution optical data collection for organic carbon, nutrients, and sediment in large coastal rivers, along with continuous measurements of discharge, water temperature, and dissolved inorganic carbon. The collecting of continuous water-quality data in the Nation?s waterways has revealed temporal trends and spatial patterns in constituents that traditional sampling approaches fail to capture, and will serve a critical role in monitoring, assessment and decision-making in a rapidly changing landscape.

Fact Sheet

Sea Floor off San Diego, California

Ocean-floor image generated from multibeam-bathymetry data acquired by the U.S. Geological Survey (USGS); Woods Hole Oceanographic Institution; Scripps Institution of Oceanography; California State University, Monterey Bay; and Fugro Pelagos. To learn more, visit http://pubs.usgs.gov/sim/2007/2959/.

General Information Product

Map showing bottom topography of the Pacific Continental Margin, Cape Mendocino to Point Conception

All contours, geographic outlines, and political boundaries shown on this map of the bottom topography, or bathymetry, of the Pacific continental margin between 34? and 41? N. latitudes were plotted from digital data bases in the library of the U.S. Geological Survey (USGS)-National Oceanic and Atmospheric Administration (NOAA) Joint Office for Mapping and Research (JOMAR). These digital data were obtained and compiled from many sources; consequently, data quality varies within particular data bases as well as from one data base to another. Bathymetric contours were digitized from a map compiled by Chase and others (1981) and from the unpublished large scale versions of that map (T.E. Chase, unpub. maps, 1981). Data for the area seaward of the continental slope (~2000 m depth) were obtained primarily from the U.S. Coast and Geodetic Survey (C&GS) 1955 Pacific Exploratory Survey, a systematic and detailed (~8 -nmi trackline spacing) survey between Mexico and Canada. The USGS provided data from cruises S3-78-NC, S15-79-NC, L2-77-NC, Ll0-76-NC, and Bartlett 72. Data were also obtained from Scripps Institution of Oceanography cruises Merazine, Blue Flash, Kayak B, Scan I, and Seven Tow (Chase and Menard, 1971; Chase and others, 1975; Wilde and others, 1976; Wilde and others, 1978). The 200-m contour was derived from the National Ocean Survey charts 1306N-20 (1975), 1307N-l1B (1974a), 1307N-18B (1974b), and C&GS chart 1308N-12 (1969). Sea-floor depths were corrected for sound velocity in sea water using Matthew's (1939) tables. Onshore topographic contours were generated by computer from a modified version of 3-arc-second elevation data provided by the Defense Mapping Agency. The United States digital shoreline was obtained from the NOAA, NOS, Nautical Charting Division, National Atlas files. The coastline of Canada was digitized from Canadian Hydrographic Service bathymetric maps. The primary source of names of the sea floor features was the "Gazetteer of Undersea Features" (Defense Mapping Agency, 1990). Acknowledgments Christopher Hines assisted in the construction and verification of the digital data bases. Reviews and suggestions by Edward C. Escowitz and Florence Wong and advice provided by Will Stettner regarding the cartographic design substantially improved the quality of this map. References Cited Chase, T.E., and Menard, H.W., 1971, Bathymetric atlas of the northeastern Pacific Ocean: U.S. Naval Oceanographic Office Publication 1303, scale 1:2,000,000 at 33° latitude, 48 p. Chase, T.E., Wilde, Pat, and Normark, W.R., 1975, Oceanographic data of the Monterey Deep Sea Fan: San Diego, University of California, Institute of Marine Resources Publication TR 58, scale 1:898,524 at 35° latitude. Chase, T.E., Wilde, Pat, Normark, W.R., Miller, C.P., Seekins, B.A., and Young, J.D., 1981, Offshore topography of the Western United States between 32° and 49° North latitudes: U.S. Geological Survey Open-File Report 81-443, scale 1:864,518 at 38° latitude, 2 sheets. Coast and Geodetic Survey, 1969, Point St. George to Point Delgada: Coast and Geodetic Survey Bathymetric Map 1308N-12, scale 1:250,000. Defense Mapping Agency, 1990, Gazetteer of undersea features (4th ed.): Washington, D.C., Defense Mapping Agency. Matthews, D.J., 1939, Tables of the velocity of sound in pure water and sea water (2d ed.): London, Admiralty, Hydrographic Department, H.D. 282, 52 p. National Ocean Survey, 1974a, Vicinity Pt. Sur to Pt. Reyes: National Ocean Survey Bathymetric Map 1307N-11B, scale 1:250,000. National Ocean Survey, 1974b, Pt. Reyes to Tolo Bank: National Ocean Survey Bathymetric Map 1307N-18B, scale 1:250,000. National Ocean Survey, 1975, Cape San Martin to Point Conception: National Ocean Survey Bathymetric Map 1306N-20, scale 1:250,000. Wilde, Pat, Normark, W.R., and Chase, T.E., 1976, Oceanographic data off central California 37° to 40° North including the Delgada Deep Sea Fan: Berkeley, University of California, Lawrence Berkeley Laboratory Publication 92, scale 1 :864,581 at 38° latitude. Wilde, Pat, Chase, T.E., Holmes, M.L., Normark, W.R., Thomas, J.A., McCulloch, D.S., and Kulm, L.D., 1978, Oceanographic data off northern California-southern Oregon 40° to 43° North including the Gorda Deep Sea Fan: Berkeley, University of California, Lawrence Berkeley Laboratory Publication 251, scale 1:815,482 at 42° latitude.

IMAP

Map showing a deep-tow geophysical study of the north end of the San Clemente Fault, California Borderland

A deep-tow geophysical study of a small ridge along the north end of the San Clemente fault, informally termed Kimki Ridge by Arne Junger and J.G. Vedder (unpub. data, 1979), was conducted in April 1976 using the R/V Melville of the Scripps Institution of Oceanography. The purpose of the survey was to search for evidence of active faulting along the north-ward extension of the San Clemente fault, a major structural feature in the California Borderland (fig. 1).

California

Bathymetric map of Lydonia Canyon, U.S. Atlantic Outer Continental Shelf

Lydonia Canyon is one of several large submarine canyons that indent the eastern U.S. Continental Shelf along the southern flank of Georges Bank (Index map). This bathymetric map of the upper part of Lydonia Canyon (water depths shallower than about 2,00 m) was prepared as part of a study of the physical oceanography and geology of Lydonia Canyon (Butman and others, 1983; Twichell, 1983). An accurate map of the canyon at a scale of at least 1:50,000 was needed for placement of current-meter morrings, for location of hydrographic and sediment sampling stations, and for interpretation of current-meter and geologic data. The map covers the area from 40°10'N. to 40°40'N. and from 67°28'W. to 67°50'W.

Atlantic Outer Continental Shelf, Lydonia Canyon

Kittlitz’s and Marbled Murrelets in Kenai Fjords National Park, south-central Alaska: At-sea distribution, abundance, and foraging habitat, 2006–08

Kittlitz’s murrelets ( Brachyramphus brevirostris ) and marbled murrelets ( B. marmoratus ) are small diving seabirds and are of management concern because of population declines in coastal Alaska. In 2006–08, we conducted a study in Kenai Fjords National Park, south-central Alaska, to estimate the recent population size of Brachyramphus murrelets, to evaluate productivity based on juvenile to adult ratios during the fledgling season, and to describe and compare their use of marine habitat. We also attempted a telemetry study to examine Kittlitz’s murrelet nesting habitat requirements and at-sea movements. We estimated that the Kittlitz’s murrelet population was 671 ± 144 birds, and the marbled murrelet population was 5,855 ± 1,163 birds. Kittlitz’s murrelets were limited to the heads of three fjords with tidewater glaciers, whereas marbled murrelets were more widely distributed. Population estimates for both species were lower in 2007 than in 2006 and 2008, possibly because of anomalous oceanographic conditions that may have delayed breeding phenology. During late season surveys, we observed few hatch-year marbled murrelets and only a single hatch-year Kittlitz’s murrelet over the course of the study. Using radio telemetry, we found a likely Kittlitz’s murrelet breeding site on a mountainside bordering one of the fjords. We never observed radio-tagged Kittlitz’s murrelets greater than 10 kilometer from their capture sites, suggesting that their foraging range during breeding is narrow. We observed differences in oceanography between fjords, reflecting differences in sill characteristics and orientation relative to oceanic influence. Acoustic biomass, a proxy for zooplankton and small schooling fish, generally decreased with distance from glaciers in Northwestern Lagoon, but was more variable in Aialik Bay where dense forage fish schools moved into glacial areas late in the summer. Pacific herring ( Clupea pallasii ), capelin ( Mallotus villosus ) and Pacific sand lance ( Ammodytes hexapterus ) were important forage species for murrelets in Kenai Fjords. Euphausiids also may have been an important forage resource for Kittlitz’s murrelets in turbid glacial outflows in shallow waters during daytime. Marbled murrelets generally were more tolerant to a wider range of foraging habitat conditions although they tended to avoid the ice-covered silty waters close to glaciers. In contrast, Kittlitz’s murrelets preferred areas where the influence of tidewater glaciers was the greatest and where their distribution was determined largely by prey availability. This work highlights an important link between interannual variability in murrelet counts at sea and mesoscale oceanographic conditions that influence marine productivity and prey distribution.

Open-File Report

Borehole-explosion and air-gun data acquired in the 2011 Salton Seismic Imaging Project (SSIP), southern California: description of the survey

The Imperial and Coachella Valleys are being formed by active plate-tectonic processes. From the Imperial Valley southward into the Gulf of California, plate motions are rifting the continent apart. In the Coachella Valley, the plates are sliding past one another along the San Andreas and related faults (fig. 1). These processes build the stunning landscapes of the region, but also produce damaging earthquakes. Rupture of the southern section of the San Andreas Fault (SAF), from the Coachella Valley to the Mojave Desert, is believed to be the greatest natural hazard that California will face in the near future. With an estimated magnitude between 7.2 and 8.1, such an event would result in violent shaking, loss of life, and disruption of infrastructure (freeways, aqueducts, power, petroleum, and communication lines) that might bring much of southern California to a standstill. As part of the nation’s efforts to avert a catastrophe of this magnitude, a number of projects have been undertaken to more fully understand and mitigate the effects of such an event. The Salton Seismic Imaging Project (SSIP), funded jointly by the National Science Foundation (NSF) and the U.S. Geological Survey (USGS), seeks to understand, through seismic imaging, the structure of the Earth surrounding the SAF, including the sedimentary basins on which cities are built. The principal investigators (PIs) of this collaborative project represent the USGS, Virginia Polytechnic Institute and State University (Virginia Tech), California Institute of Technology (Caltech), Scripps Institution of Oceanography (Scripps), University of Nevada, Reno (UNR), and Stanford University. SSIP will create images of underground structure and sediments in the Imperial and Coachella Valleys and adjacent mountain ranges to investigate the earthquake hazards posed to cities in this area. Importantly, the images will help determine the underground geometry of the SAF, how deep the sediments are, and how fast earthquake energy can travel through the sediments. All of these factors determine how hard the earth will shake during a major earthquake. If we can improve on our understanding of how and where earthquakes will occur, and how strong their resultant shaking will be, then buildings can be designed or retrofitted accordingly in order to resist damage and collapse, and emergency plans can be adequately prepared. In addition, SSIP will investigate the processes of rifting and magmatism in the Salton Trough in order to better understand this important plate-boundary region. The Salton Trough is a unique rift in that subsidence is accompanied by huge influxes of infilling sediment from the Colorado River. Volcanism that accompanies the subsidence here is muted by these influxes of sediment. The Salton Trough, in the central part of the Imperial Valley, is apparently made up of entirely new crust: young sediment in the upper crust and basaltic intrusive rocks in the mid-to-lower crust (Fuis and others, 1984). Similar to the ultrasound and computed tomography (CT) scans performed by the medical industry, seismic imaging is a collection of techniques that enable scientists to obtain a picture of what is underground. The petroleum industry routinely uses these techniques to search for oil and gas at relatively shallow depths; however, the scope of this project demanded that we image as much as 30 km into the Earth’s crust. This project generated and recorded seismic waves, similar to sound waves, which move downward into the Earth and are bent (refracted) or echoed (reflected) back to the surface. SSIP acquired data in a series of intersecting lines that cover key areas of the Salton Trough. The sources of sound waves were detonations (shots) in deep boreholes, designed to create energy equivalent to magnitude 1–2 earthquakes. The study region routinely experiences earthquakes of these magnitudes, but earthquakes are not located in such a way as to permit us to create the detailed images we need for earthquake hazard assessment. Air gun bursts, generated in the Salton Sea along extensions of our onshore seismic lines, also were utilized as sound-wave sources. Temporary deployments of portable land seismometers, as well as ocean-bottom seismometers (OBSs) on the floor of the Salton Sea, recorded the energy from the land shots and air gun bursts. SSIP is similar to the Los Angeles Regional Seismic Experiments of 1994 and 1999 (LARSE I and II, respectively; Murphy and others, 1996; Fuis and others, 2001). The LARSE surveys demonstrated that the USGS and collaborators can safely and effectively conduct seismic imaging surveys in urban and nonurban areas, on lands owned and/or managed by many different types of agencies and entities. Information was produced that could not have been obtained any other way, and this information was key to changing the leading ideas about earthquake hazards at that time in the Los Angeles region. These surveys produced no significant environmental impact or damage to structures, and they did not trigger earthquakes.

California

California State Waters Map Series — Offshore of Monterey, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath bathymetry data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Monterey map area in central California is located on the Pacific Coast, about 120 km south of San Francisco. Incorporated cities in the map area include Seaside, Monterey, Marina, Pacific Grove, Carmel-by-the-Sea, and Sand City. The local economy receives significant resources from tourism, as well as from the Federal Government. Tourist attractions include the Monterey Bay Aquarium, Cannery Row, Fisherman’s Wharf, and the many golf courses near Pebble Beach, and the area serves as a gateway to the spectacular scenery and outdoor activities along the Big Sur coast to the south. Federal facilities include the Army’s Defense Language Institute, the Naval Postgraduate School, and the Fleet Numerical Meteorology and Oceanography Center (operated by the Navy). In 1994, Fort Ord army base, located between Seaside and Marina, was closed; much of former army base land now makes up the Fort Ord National Monument, managed by the U.S. Bureau of Land Management as part of the National Landscape Conservation System. In addition, part of the old Fort Ord is now occupied by California State University, Monterey Bay. The offshore part of the map area lies entirely within the Monterey Bay National Marine Sanctuary, one of the nation’s largest marine sanctuaries. State beaches and parks within the map area include Fort Ord Dunes State Park and the Marina, Monterey, and Asilomar State Beaches, as well as Carmel River State Beach, which includes the Carmel River Lagoon and Wetland Natural Preserve. The map area also includes all or part of several State Marine Protected Areas, including the Carmel Pinnacles, Asilomar, and Lovers Point–Julia Platt State Marine Reserves, as well as the Carmel Bay, Pacific Grove Marine Gardens, Edward F. Ricketts, and Portuguese Ledge State Marine Conservation Areas. The coastal zone in the map area is characterized by two distinct physiographies. From Marina to Monterey, sandy beaches are backed by a belt of sand dunes, as much as 30 to 40 m high and as wide as 8 km. The Salinas River supplies the sand for the beaches and dunes. Nearshore sediment transport is primarily to the south, in the southern Monterey littoral cell. Along the Monterey peninsula, which lies at the north end of the rugged Santa Lucia Range, coastal relief is very different. The peninsula is characterized largely by low marine terraces that formed mostly on hard and relatively stable granitic bedrock. Carmel Beach in Carmel-by-the-Sea is the longest continuous beach in this area; bedrock points and small pocket beaches characterize most of the rest of the peninsula. The Carmel River littoral cell extends along the coast from Point Pinos to Point Lobos (just south of the map area), including Carmel Beach; sediment transport is primarily to the south. The granitic rocks that crop out so prominently along the Monterey peninsula make up part of the Salinian block, a crustal terrane that in this area lies west of the San Andreas Fault and east of the San Gregorio Fault. The strike-slip San Andreas Fault Zone, which lies just 26 km east of the map area, is the most important structure within the Pacific–North American transform plate boundary. The San Gregorio Fault, a secondary fault within the distributed plate boundary, cuts through (and is roughly aligned with) Carmel Canyon, a submarine canyon in the southwest corner of the map area that is part of the Monterey Canyon system. The San Gregorio Fault Zone is part of a fault system that is present predominantly in the offshore for about 400 km, from Point Conception in the south (where it is known as the Hosgri Fault) to Bolinas and Point Reyes in the north. The offshore part of the map area primarily consists of relatively flat continental shelf, bounded on the west by the steep flanks of Carmel Canyon. Shelf width varies from 2 to 3 km in the southern part of the map area, near the mouth of Carmel Canyon, to 14 km in Monterey Bay. Bedrock beneath the shelf is overlain in many areas by variable amounts (0 to 16 m) of upper Quaternary shelf and nearshore sediments deposited as sea level fluctuated in the late Pleistocene. “Soft-induration,” unconsolidated sediment is the dominant (about 63 percent) habitat type on the continental shelf, followed by “hard-induration” rock and boulders (about 34 percent) and “mixed-induration” substrate (about 3 percent). At water depths of about 100 to 130 m, the shelf break approximates the shoreline during the sea-level lowstand of the Last Glacial Maximum, about 21,000 years ago. Carmel Canyon and other parts of the Monterey Canyon system in the map area extend from the shelf break to water depths that reach 1,600 m. Most of the extensive incision of the shelf break and canyon flanks probably occurred during repeated Quaternary sea-level lowstands. The relatively straight floor of Carmel Canyon notably is aligned with the San Gregorio Fault Zone. Mixed hard-soft substrate is the most common (about 51 percent) habitat type in Carmel Canyon; hard bedrock and soft, unconsolidated sediment cover about 40 percent and 9 percent of canyon habitat, respectively. This part of the central California coast is exposed to large North Pacific swells from the northwest throughout the year. Wave heights range from 2 to 10 m, the larger swells occurring from October to May. During El Niño–Southern Oscillation (ENSO) events, winter storms track farther south than they do in normal (non-ENSO) years, thereby impacting the map area more frequently and with waves of larger heights. Benthic species observed in the map area are natives of the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. An observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. The kelp beds are well-known habitat for the population of southern sea otters. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California

Coastal circulation and water-column properties in the National Park of American Samoa, February–July 2015

There is little information on the oceanography in the National Park of American Samoa (NPSA). The transport pathways for potentially harmful constituents of land-derived runoff, as well as larvae and other planktonic organisms, are driven by nearshore circulation patterns. To evaluate the processes affecting coral reef ecosystem health, it is first necessary to understand the oceanographic processes driving nearshore circulation, residence times, exposure rates, and transport pathways. Information on how the NPSA’s natural resources may be affected by anthropogenic sources of pollution, sediment runoff, larval transport, or modifications to the marine protected areas is critical to NPSA resource managers for understanding and ultimately managing coastal and marine resources. To address this need, U.S. Geological Survey and U.S. National Park Service researchers conducted a collaborative study in 2015 to determine coastal circulation patterns and water-column properties along north-central Tutuila, American Samoa, in an area focused on NPSA’s Tutuila Unit and its coral reef ecosystem. The continuous measurements of waves, currents, tides, and water-column properties from these instrument deployments over 150 days, coupled with available meteorological measurements of wind and rainfall, provide information on nearshore circulation and the variability in these hydrodynamic properties for NPSA’s Tutuila Unit. In general, circulation was strongly driven by regional winds at longer (greater than day) timescales and by tides at shorter (less than day) timescales. Flows were primarily directed along shore, with current speeds faster offshore to the north and slower closer to shore, especially in embayments. Water-column properties exhibit strong seasonality coupled to the shift from non-trade wind season to trade wind season. During the non-trade wind season that was characterized by variable winds and larger waves in the NPSA, waters were warmer, slightly more saline, relatively less optically clear, and more stratified. When winds shifted to a more consistent trade wind pattern in the austral fall, the waters cooled and became less stratified because of decreased insolation. There are consistent spatial patterns in water column characteristics—Waters were warmer and less saline near the surface and closer to shore, especially in embayments, which tended to be more turbid, less clear, and characterized by higher chlorophyll than waters offshore. Water residence times were shorter farther offshore and longer closer to shore and in embayments, but varied spatially because of different forcing. Warmer, lower salinity, higher chlorophyll, and more turbid waters in embayments tend to reside in those locations for much greater durations, resulting in greater exposure of embayment ecosystems to those waters. This is in contrast with waters farther offshore, where the combination of shorter residence times and cooler, higher salinity water results in less exposure to land runoff. Understanding coastal circulation patterns and water-column properties in NPSA’s waters along north-central Tutuila may help to better understand how meteorological and oceanographic processes, at the regional and local scale, affect coral reef health and sustainability in this region.

Open-File Report

Multibeam bathymetry and selected perspective views offshore San Diego, California

This set of two posters consists of a map on one sheet and a set of seven perspective views on the other. The ocean floor image was generated from multibeam-bathymetry data acquired by Federal and local agencies as well as academic institutions including: - U.S. Geological Survey mapped from the La Jolla Canyon south to the US-Mexico border using a Kongsberg Simrad multibeam echosounder system (MBES) (March - April 1998). Data and metadata available at http://pubs.usgs.gov/of/2004/1221/. - Woods Hole Oceanographic Institution and SCRIPPS Institution of Oceanography mapped the majority of the La Jolla Fan Valley including the sea floor to the north and south of the valley using a Seabeam 2100 MBES. Data available at http://www.ngdc.noaa.gov/mgg/bathymetry/multibeam.html. Survey ID, AT07L09, Chief Scientists, Barrie Walden and Joseph Coburn (April 2002). - California State University, Monterey Bay, mapped Scripps Canyon and the head of La Jolla Canyon using a Reson 8101 MBES (October 2001). Data and metadata available at http://seafloor.csumb.edu/SFMLwebDATA.htm. This work was funded by the California Department of Fish and Game California Coastal Conservancy, San Diego Association of Governments (SANDAG), California Department of Fish and Game, and Fugro Pelagos mapped the nearshore region out to about 35-40 m. - The sea floor within this image that has not been mapped with MBES is filled in with interpreted bathymetry gridded from single-beam data available at http://www.ngdc.noaa.gov/mgg/bathymetry/hydro.html. Depths are in meters below sea level, which is referenced to Mean Lower Low Water.

California

Colored shaded-relief bathymetry, acoustic backscatter, and selected perspective views of the Inner Continental Borderland, southern California

In late 2013, Scripps Institution of Oceanography collected multibeam bathymetry and acoustic-backscatter data of the Inner Continental Borderland Region, Southern California. The U.S. Geological Survey Pacific Coastal and Marine Science Center processed these data, and this report provides the data in a number of different formats in addition to a set of map sheets. The data catalog provides the new bathymetry and acoustic-backscatter data, collected mainly in the Gulf of Santa Catalina and San Diego Trough, as well as this new bathymetry data merged with other publicly available bathymetry data from the region. Sheet 1 displays a colored shaded-relief bathymetry map of the Inner Continental Borderland generated from the merged bathymetry data. Sheet 2 displays the new acoustic-backscatter data along with other available backscatter data in the region. Sheet 3 displays selected perspective views of the bathymetry data highlighting submarine canyon and channel systems, knolls, and tectonic features.

California

Proceedings of the Fourth Glacier Bay Science Symposium

Foreword Glacier Bay was established as a National Monument in 1925, in part to protect its unique character and natural beauty, but also to create a natural laboratory to examine evolution of the glacial landscape. Today, Glacier Bay National Park and Preserve is still a place of profound natural beauty and dynamic landscapes. It also remains a focal point for scientific research and includes continuing observations begun decades ago of glacial processes and terrestrial ecosystems. In recent years, research has focused on glacial-marine interactions and ecosystem processes that occur below the surface of the bay. In October 2004, Glacier Bay National Park convened the fourth in a series of science symposiums to provide an opportunity for researchers, managers, interpreters, educators, students and the general public to share knowledge about Glacier Bay. The Fourth Glacier Bay Science Symposium was held in Juneau, Alaska, rather than at the Park, reflecting a desire to maximize attendance and communication among a growing and diverse number of stakeholders interested in science in the park. More than 400 people attended the symposium. Participants provided 46 oral presentations and 41 posters covering a wide array of disciplines including geology, glaciology, oceanography, wildlife and fisheries biology, terrestrial and marine ecology, socio-cultural research and management issues. A panel discussion focused on the importance of connectivity in Glacier Bay research, and keynote speakers (Gary Davis and Terry Chapin) spoke of long-term monitoring and ecological processes. These proceedings include 56 papers from the symposium. A summary of the Glacier Bay Science Plan-itself a subject of a meeting during the symposium and the result of ongoing discussions between scientists and resource managers-also is provided. We hope these proceedings illustrate the diversity of completed and ongoing scientific studies, conducted within the Park. To this end, we invited all presenters to submit brief technical summaries of their work, to capture the gist of their study and its main findings without an overload of details and methodology. We also asked authors to include a few words on the management implications of their work to help bridge the gap between scientists and managers in understanding how specific research questions may translate to management practice. Papers in this volume are laid out by subject matter, from terrestrial and freshwater subjects to glacial-marine geology, to the ecology of marine animals and ending with risk assessment, human impacts and science-management considerations. In summary, we hope the proceedings will serve as a useful reference to completed and ongoing studies in Glacier Bay National Park, and thereby provide park enthusiasts, scientists, and managers with a road map of scientific progress.

Scientific Investigations Report

The coral reef of South Moloka'i, Hawai'i— Portrait of a sediment-threatened fringing reef

Moloka‘i, with the most extensive coral reef in the main Hawaiian Islands, is especially sacred to Hina, the Goddess of the Moon. As Hinaalo, she is the Mother of the Hawaiian people; as Hinapuku‘a, she is the Goddess of Fishermen; and in the form Hina‘opuhalako‘a, she is the Goddess who gave birth to coral, coral reefs, and all spiny marine organisms. Interdependence between the reef’s living resources, the people, and their cosmology was the basis for management of Moloka‘i’s coastal waters for over a thousand years. The ancient residents of Moloka‘i built the greatest concentration of fishponds known anywhere, but their mastery of mariculture, something needed now more than ever, was lost after near genocide from exotic Western diseases. Subsequent destruction of the native vegetation for exotic cattle, goats, pigs, sugar cane, and pineapple caused soil erosion and sedimentation on the reef flat. This masterful volume clearly documents that soil washing into the sea is the major threat to the reef today. Abandoned fishponds, choked with sediment, now act as barriers and mud traps, making damage to corals less than it would otherwise would have been. The role of mud and freshwater from land in preventing coral reef growth, clearly articulated in Charles Darwin’s first book, The Structure and Distribution of Coral Reefs, is the major theme of this book. All around the tropics, coral reefs have died from huge increases in terrestrial sedimentation that resulted from destruction of hillside forests for cash-crop agriculture and pastures in the colonial era, especially in Latin America, Asia, and the islands of the Caribbean and Indo-Pacific. It is obvious that one cannot manage the coastal zone as a unit separate from the watersheds that drain into it. Yet there has been surprisingly little comprehensive scientific study of these impacts. In this landmark volume, U.S. Geological Survey researchers and their colleagues have developed and applied a remarkably integrated approach to the reefs of Moloka‘i, combining geology, oceanography, and biology to provide an in-depth understanding of the processes that have made these reefs grow and that now limit them. They have joined old fashioned natural history of marine animals and plants with study of the geological evolution of the island, hydrology, meteorology, and land-use history, to an arsenal of new methods of remote sensing, including aerial photography, laser ranging, infrared thermal mapping, seismic reflection, in-situ instrumentation to measure chemical parameters of water quality, and direct measurements of the physical driving forces affecting them—such as wave energy, currents, sedimentation, and sediment transport. They provide a level of documentation and insight that has never been available for any reef before. A remarkable feature of this book is that it is aimed at the people of Moloka‘i to inform them of what is happening to their reef and what they might do to preserve their vital resources. The scientific data and interpretations are expressed in unusually clear and comprehensible language, free of the professional jargon that makes most technical publications impenetrable to the public that most needs to know about them, yet without loss of scientific rigor. Here readers will see clearly explained the whole path of soil loss, from the impacts of wild pigs and goats at higher elevations, deforestation of the hills for cattle pasture at lower levels, and denudation of low lands for cash crops. The resulting biological impoverishment has bared the soils, which wash away in flash storms, smothering the inshore reefs, whose growth was already limited because they had grown right up to sea level. The data in this book show that the mud doesn’t get far if it is washed into the sea during a big storm with heavy waves. Afterwards this mud keeps getting stirred up by every succeeding storm, spreading and affecting corals over wider areas until it is finally washed out of the system—and that only happens if there is no more new mud washing onto the reef. I saw this myself a few years ago in Pila‘a Bay on Kaua‘i, where a bulldozed hillside of abandoned sugar cane fields had slumped right on top of a coral reef following exceptional rains. Years later, the algae species were zoned in a way that clearly mapped the distribution of nutrients washed into the bay, most likely from fertilizers bound to the eroded soils. That pattern closely mimics, on a small scale, that shown in Moloka‘i in this volume, where the inner reef is covered with algae, zoned by species in a way that points to land-based sources of nutrients, while the outermost reef slope is still coral dominated, and the deep algae seem to indicate deep-water nutrient upwelling. What of the future? The Hawaiian Islands have been exceptionally fortunate to be spared the worst coral heatstroke death from high temperatures, at least to date. So far, the worst global warming impacts have luckily been small in this region, and the small number of people on Moloka‘i has kept population densities, and sewage pollution, low compared to the more developed islands. Nutrients from years of sugar and pineapple fertilization, and the washing of this soil onto the reefs, show clear influences on the pattern of algae on the reef. Even at very low levels of nutrients, well below that which drives algae to smother and kill coral reefs, more algae is present. Soil erosion control is therefore the key to better management of both nutrients and turbidity on Moloka‘i reefs. To that end land management actions mentioned in this book, such as suppressing wild fires and eliminating wild goats and pigs, could be made even more effective if supplemented by active erosion control using plants whose roots bind the soil effectively in place. Through all of these efforts, Hina and the people of Moloka‘i could be happy again!

Hawaii

DGMETA (version 1)—Dissolved gas modeling and environmental tracer analysis computer program

DGMETA (Dissolved Gas Modeling and Environmental Tracer Analysis) is a Microsoft Excel-based computer program that is used for modeling air-water equilibrium conditions from measurements of dissolved gases and for computing concentrations of environmental tracers that rely on air-water equilibrium model results. DGMETA can solve for the temperature, salinity, excess air, fractionation of gases, or pressure/elevation of water when it is equilibrated with the atmosphere. Models are calibrated inversely using one or more measurements of dissolved gases such as helium, neon, argon, krypton, xenon, and nitrogen. Excess nitrogen gas, originating from denitrification or other sources, also can be included as a fitted parameter or as a separate calculation from the dissolved gas modeling results. DGMETA uses the air-water equilibrium models to separate measured concentrations of gases and isotopes of gases into components that are used for tracing water in the environment. DGMETA calculates atmospheric dry-air mole fractions (mixing ratios) for transient atmospheric gas tracers such as chlorofluorocarbons, sulfur hexafluoride, and bromotrifluoromethane (Halon-1301); and concentrations of tritiogenic helium-3 and radiogenic helium-4, which accumulate from the decay of tritium in water and the decay of uranium and thorium in rocks, respectively. Sample data can be graphed to identify applicable models of excess air, samples that contain excess nitrogen gas, or samples that have partially degassed, for example. Monte Carlo analysis of errors associated with dissolved gas equilibrium model results can be carried through computations of environmental tracer concentrations to provide robust estimates of error. In addition, graphical routines for separating helium sources using helium isotopes are included to refine estimates of tritiogenic helium-3 when terrigenic helium from mantle or crustal sources is present in samples. Environmental tracer concentrations and their errors computed from DGMETA can be used with other programs, such as TracerLPM (Jurgens and others, 2012), to determine groundwater ages and biogeochemical reaction rates. DGMETA also produces output files in a format that meets the U.S. Geological Survey open data requirements for documentation of model inputs and outputs. DGMETA is a versatile and adaptable program that allows users to add solubility data for new gases, modify the existing set of gas solubility data, modify the default set of gases used for modeling, choose calculations based on real (non-ideal) gas behavior, and select various concentration units for data entry and results to match laboratory reports and study objectives. DGMETA comes with a set of gases widely used in hydrology and oceanography and many gases include multiple solubilities from previous work. Seventeen dissolved gases are included in the default version of the program: noble gases (helium, neon, argon, krypton, and xenon), reactive gases (nitrogen, oxygen, methane, carbon dioxide, carbon monoxide, hydrogen, and nitrous oxide), and environmental tracers (chlorofluorocarbon-11, chlorofluorocarbon-12, chlorofluorocarbon-113, sulfur hexafluoride, and Halon-1301).

Techniques and Methods

Food-web dynamics and isotopic niches in deep-sea communities residing in a submarine canyon and on the adjacent open slopes

Examination of food webs and trophic niches provide insights into organisms' functional ecology, yet few studies have examined trophodynamics within submarine canyons, where the interaction of canyon morphology and oceanography influences habitat provision and food deposition. Using stable isotope analysis and Bayesian ellipses, we documented deep-sea food-web structure and trophic niches in Baltimore Canyon and the adjacent open slopes in the US Mid-Atlantic Region. Results revealed isotopically diverse feeding groups, comprising approximately 5 trophic levels. Regression analysis indicated that consumer isotope data are structured by habitat (canyon vs. slope), feeding group, and depth. Benthic feeders were enriched in 13 C and 15 N relative to suspension feeders, consistent with consuming older, more refractory organic matter. In contrast, canyon suspension feeders had the largest and more distinct isotopic niche, indicating they consume an isotopically discrete food source, possibly fresher organic material. The wider isotopic niche observed for canyon consumers indicated the presence of feeding specialists and generalists. High dispersion in δ 13 C values for canyon consumers suggests that the isotopic composition of particulate organic matter changes, which is linked to depositional dynamics, resulting in discrete zones of organic matter accumulation or resuspension. Heterogeneity in habitat and food availability likely enhances trophic diversity in canyons. Given their abundance in the world's oceans, our results from Baltimore Canyon suggest that submarine canyons may represent important havens for trophic diversity.

Baltimore Canyon

Hydrothermal vents and methane seeps: Rethinking the sphere of influence

Although initially viewed as oases within a barren deep ocean, hydrothermal vent and methane seep communities are now recognized to interact with surrounding ecosystems on the sea floor and in the water column, and to affect global geochemical cycles. The importance of understanding these interactions is growing as the potential rises for disturbance from oil and gas extraction, seabed mining and bottom trawling. Here we synthesize current knowledge of the nature, extent and time and space scales of vent and seep interactions with background systems. We document an expanded footprint beyond the site of local venting or seepage with respect to elemental cycling and energy flux, habitat use, trophic interactions, and connectivity. Heat and energy are released, global biogeochemical and elemental cycles are modified, and particulates are transported widely in plumes. Hard and biotic substrates produced at vents and seeps are used by “benthic background” fauna for attachment substrata, shelter, and access to food via grazing or through position in the current, while particulates and fluid fluxes modify planktonic microbial communities. Chemosynthetic production provides nutrition to a host of benthic and planktonic heterotrophic background species through multiple horizontal and vertical transfer pathways assisted by flow, gamete release, animal movements, and succession, but these pathways remain poorly known. Shared species, genera and families indicate that ecological and evolutionary connectivity exists among vents, seeps, organic falls and background communities in the deep sea; the genetic linkages with inactive vents and seeps and background assemblages however, are practically unstudied. The waning of venting or seepage activity generates major transitions in space and time that create links to surrounding ecosystems, often with identifiable ecotones or successional stages. The nature of all these interactions is dependent on water depth, as well as regional oceanography and biodiversity. Many ecosystem services are associated with the interactions and transitions between chemosynthetic and background ecosystems, for example carbon cycling and sequestration, fisheries production, and a host of non-market and cultural services. The quantification of the sphere of influence of vents and seeps could be beneficial to better management of deep-sea environments in the face of growing industrialization.

Frontiers in Marine Science

Advancing marine biological observations and data requirements of the complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks

Measurements of the status and trends of key indicators for the ocean and marine life are required to inform policy and management in the context of growing human uses of marine resources, coastal development, and climate change. Two synergistic efforts identify specific priority variables for monitoring: Essential Ocean Variables (EOVs) through the Global Ocean Observing System (GOOS), and Essential Biodiversity Variables (EBVs) from the Group on Earth Observations Biodiversity Observation Network (GEO BON). Both systems support reporting against internationally agreed conventions and treaties. GOOS, established under the auspices of the Intergovernmental Oceanographic Commission (IOC), plays a leading role in coordinating global monitoring of the ocean and in the definition of EOVs. GEO BON is a global biodiversity observation network that coordinates observations to enhance management of the world’s biodiversity and promote both the awareness and accounting of ecosystem services. Convergence and agreement between these two efforts are required to streamline existing and new marine observation programs to advance scientific knowledge effectively and to support the sustainable use and management of ocean spaces and resources. In this context, the Marine Biodiversity Observation Network (MBON), a thematic component of GEO BON, is collaborating with GOOS, the Ocean Biogeographic Information System (OBIS), and the Integrated Marine Biosphere Research (IMBeR) project to ensure that EBVs and EOVs are complementary, representing alternative uses of a common set of scientific measurements. This work is informed by the Joint Technical Commission for Oceanography and Marine Meteorology (JCOMM), an intergovernmental body of technical experts that helps international coordination on best practices for observing, data management and services, combined with capacity development expertise. Characterizing biodiversity and understanding its drivers will require incorporation of observations from traditional and molecular taxonomy, animal tagging and tracking efforts, ocean biogeochemistry, and ocean observatory initiatives including deep ocean and seafloor. The partnership between large-scale ocean observing and product distribution initiatives (MBON, OBIS, JCOMM, and GOOS) is an expedited, effective way to support international policy-level assessments (e.g., the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services or IPBES), along with the implementation of international development goals (e.g., the United Nations Sustainable Development Goals).

Frontiers in Marine Science

Ocean observer study: A proposed national asset to augment the future U.S. operational satellite system

The next generation of U.S. polar orbiting environmental satellites, are now under development. These satellites, jointly developed by the Department of Defense (DoD), the Department of Commerce (DOC), and the National Aeronautics and Space Administration (NASA), will be known as the National Polar-orbiting Operational Environmental Satellite System (NPOESS). It is expected that the first of these satellites will be launched in 2010. NPOESS has been designed to meet the operational needs of the U.S. civilian meteorological, environmental, climatic, and space environmental remote sensing programs, and the Global Military Space and Geophysical Environmental remote sensing programs. This system, however, did not meet all the needs of the user community interested in operational oceanography (particularly in coastal regions). Beginning in the fall of 2000, the Integrated Program Office (IPO), a joint DoD, DOC, and NASA office responsible for the NPOESS development, initiated the Ocean Observer Study (OOS). The purpose of this study was to assess and recommend how best to measure the missing or inadequately sampled ocean parameters. This paper summarizes the ocean measurement requirements documented in the OOS, describes the national need to measure these parameters, and describes the satellite instrumentation required to make those measurements.

Marine Technology Society Journal