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USGS2014

Evidence of natural reproduction by Muskellunge in middle Tennessee rivers

Native Esox masquinongy (Muskellunge) in the Cumberland River drainage, TN, were nearly extirpated in the 1970s due to decades of over-fishing and habitat degradation from coal mining, logging, and other land-use practices. In an effort to preserve the species in that drainage, a stocking program began in 1976 in the upper Caney Fork River system in middle Tennessee where Muskellunge were not native. A trophy Muskellunge fishery eventually developed, but it was unknown whether Muskellunge were reproducing in the upper Caney Fork River system or whether the fishery was wholly dependent on the stocking program. To establish evidence of natural reproduction, we used seines, backpack electrofishing, and boat electrofishing gear in 2012 to find age-0 Muskellunge in the upper Caney Fork River system. Natural reproduction of Muskellunge was documented in the mainstem Caney Fork River above Great Falls Dam and in 3 of its 4 major tributaries. Seventeen age-0 Muskellunge were collected and one other was observed, but not handled. Age-0 Muskellunge grew rapidly (1.80–2.34 mm/day), and the largest fish collected during the study reached a total length of 399 mm by 9 October 2012. A cessation of stocking for several years coupled with routine monitoring could reveal whether natural recruitment is sufficient to sustain the fishery.

Tennessee↗

USGS2021

The local responses of aquatic ecosystems to adjacent grassland conservation: Can streams of dreams exist in a degraded riverscape?

Landscape homogenization and the removal of riparian areas have altered stream ecosystems worldwide. Numerous conservation programmes attempt to improve water quality and increase instream habitat heterogeneity to elicit desired biological responses. However, the effectiveness of many conservation efforts on isolated stream fragments remains unknown, especially in grassland regions. The effects of grassland conservation practices and the re-establishment of riparian corridors in the James River basin, South Dakota (USA) on stream water quality, habitat availability and aquatic macroinvertebrate and fish assemblages were studied in an agriculturally dominated prairie landscape. Grassland conservation efforts may have repaired riparian condition, reduced turbidity and created more diverse instream habitat complexes at conservation sites based on comparisons with paired reference reaches. Reference sites were relatively homogeneous, with prevalent siltation, bank erosion and disturbances to the riparian vegetation. Owing to significant riparian vegetation development, overhanging and aquatic vegetation, benthic detritus and woody materials were significantly more common at conservation reaches. Restoration efforts that assume ‘if you (re-)build it, they will come’ (i.e. the ‘field of dreams’ hypothesis) underestimate other important barriers to biodiversity restoration in dynamic, grassland riverscapes. Although aquatic organisms in grassland ecosystems are adapted to rapidly inhabit available habitats, the development of niche space at conservation reaches did not directly result in colonization by aquatic life. Grassland management actions did not address stream connectivity issues or overcome land use influences elsewhere in the riverscape that may govern the responses of aquatic macroinvertebrates and fish. Stream fragmentation and continuing, damaging land use patterns seemed to exceed the positive effects of restoring isolated stream reaches in these heavily degraded catchments. Catchment-scale management strategies that combine reach-level restoration actions with efforts to improve connectivity are likely to be more successful in degraded riverscapes.

South Dakota↗

USGS1995

Mineral resources, environmental issues, and land use

Contrary to predictions from the 1950s through the mid-1980s, persistent shortages of nonfuel minerals have not occurred, despite prodigious consumption, and world reserves have increased. Global availability of raw materials is relevant to policy decisions regarding mineral development and land use. Justification for environmental protection may exceed that for mining a specific ore body. Demand for environmental accountability is rising worldwide, and new technologies are enabling internalization of costs. Mineral-rich developing nations plagued by inefficient state-owned mining enterprises, high population growth rates, and environmental degradation could realize substantial benefit by reforming government policies to encourage foreign investment in resources and by appropriate allocation of mineral rents.

Science↗

USGS2012

Quality of streams in Johnson County, Kansas, 2002--10

Stream quality in Johnson County, northeastern Kansas, was assessed on the basis of land use, hydrology, stream-water and streambed-sediment chemistry, riparian and in-stream habitat, and periphyton and macroinvertebrate community data collected from 22 sites during 2002 through 2010. Stream conditions at the end of the study period are evaluated and compared to previous years, stream biological communities and physical and chemical conditions are characterized, streams are described relative to Kansas Department of Health and Environment impairment categories and water-quality standards, and environmental factors that most strongly correlate with biological stream quality are evaluated. The information is useful for improving water-quality management programs, documenting changing conditions with time, and evaluating compliance with water-quality standards, total maximum daily loads (TMDLs), National Pollutant Discharge Elimination System (NPDES) permit conditions, and other established guidelines and goals. Constituent concentrations in water during base flow varied across the study area and 2010 conditions were not markedly different from those measured in 2003, 2004, and 2007. Generally the highest specific conductance and concentrations of dissolved solids and major ions in water occurred at urban sites except the upstream Cedar Creek site, which is rural and has a large area of commercial and industrial land less than 1 mile upstream on both sides of the creek. The highest base-flow nutrient concentrations in water occurred downstream from wastewater treatment facilities. Water chemistry data represent base-flow conditions only, and do not show the variability in concentrations that occurs during stormwater runoff. Constituent concentrations in streambed sediment also varied across the study area and some notable changes occurred from previously collected data. High organic carbon and nutrient concentrations at the rural Big Bull Creek site in 2003 decreased to at least one-fourth of those concentrations in 2007 and 2010 likely because of the reduction in upstream wastewater discharge contributions. The highest concentrations of trace metals in 2010 occurred at urban sites on Mill and Indian Creeks. Zinc was the only metal to exceed the probable effects concentration in 2010, which occurred at a site on Indian Creek. In 2007, chromium and nickel at the upstream urban Cedar Creek site exceeded the probable effects concentrations, and in 2003, no metals exceeded the probable effects concentrations. Of 72 organic compounds analyzed in streambed sediment, 26 were detected including pesticides, polycyclic aromatic hydrocarbons (PAHs), fuel products, fragrances, preservatives, plasticizers, manufacturing byproducts, flame retardants, and disinfectants. All 6 PAH compounds analyzed were detected, and the probable effects concentrations for 4 of the 6 PAH compounds analyzed were exceeded in 2010. Only five pesticide compounds were detected in streambed sediment, including carbazole and four pyrethroid compounds. Chronic toxicity guidelines for pyrethroid compounds were exceeded at five sites. Biological conditions reflected a gradient in urban land use, with the less disturbed streams located in rural areas of Johnson County. About 19 percent of sites in 2010 (four sites) were fully supporting of aquatic life on the basis of the four metrics used by Kansas Department of Health and Environment to categorize sites. This is a notable difference compared to previous years when no sites (in 2003 and 2004) or just one site (in 2007) was fully supporting of aquatic life. Multimetric macroinvertebrate scores improved at the Big Bull Creek site where wastewater discharges were reduced in 2007. Environmental variables that consistently were highly negatively correlated with biological conditions were percent impervious surface and percent urban land use. In addition, density of stormwater outfall points adjacent to streams was significantly negatively correlated with biological conditions. Specific conductance of water and sum of PAH concentrations in streambed sediment also were significantly negatively correlated with biological conditions. Total nitrogen in water and total phosphorus in streambed sediment were correlated with most of the invertebrate variables, which is a notable difference from previous analyses using smaller datasets, in which nutrient relations were weak or not detected. The most important habitat variables were sinuosity, length and continuity of natural buffers, riffle substrate embeddedness, and substrate cover diversity, each of which was correlated with all invertebrate metrics including a 10-metric combined score. Correlation analysis indicated that if riparian and in-stream habitat conditions improve then so might invertebrate communities and stream biological quality. Sixty-two percent of the variance in macroinvertebrate community metrics was explained by the single environmental factor, percent impervious surface. Invertebrate responses to urbanization in Johnson County indicated linearity rather than identifiable thresholds. Multiple linear regression models developed for each of the four macroinvertebrate metrics used to determine aquatic-life-support status indicated that percent impervious surface, as a measure of urban land use, explained 34 to 67 percent of the variability in biological communities. Results indicate that although multiple factors are correlated with stream quality degradation, general urbanization, as indicated by impervious surface area or urban land use, consistently is determined to be the fundamental factor causing change in stream quality. Effects of urbanization on Johnson County streams are similar to effects described in national studies that assess effects of urbanization on stream health. Individually important environmental factors such as specific conductance of water, PAHs in streambed sediment, and stream buffer conditions, are affected by urbanization and, collectively, all contribute to stream impairments. Policies and management practices that may be most important in protecting the health of streams in Johnson County are those minimizing the effects of impervious surface, protecting stream corridors, and decreasing the loads of sediment, nutrients, and toxic chemicals that directly enter streams through stormwater runoff and discharges.

Kansas↗

USGS2009

Coastal wetlands: an integrated ecosystem approach

Coastal wetlands are under a great deal of pressure from the dual forces of rising sea level and the intervention of human populations both along the estuary and in the river catchment. Direct impacts include the destruction or degradation of wetlands from land reclamation and infrastructures. Indirect impacts derive from the discharge of pollutants, changes in river flows and sediment supplies, land clearing, and dam operations. As sea level rises, coastal wetlands in most areas of the world migrate landward to occupy former uplands. The competition of these lands from human development is intensifying, making the landward migration impossible in many cases. This book provides an understanding of the functioning of coastal ecosystems and the ecological services that they provide, and suggestions for their management. In this book a CD is included containing color figures of wetlands and estuaries in different parts of the world.

Book↗

USGS2019

Catchment-level estimates of nitrogen and phosphorus agricultural use from commercial fertilizer sales for the conterminous United States, 2012

Nutrient inputs from commercial agricultural fertilizer, particularly nitrogen and phosphorus, are important factors contributing to the degradation of surface-water quality and the alteration of aquatic ecosystems. Despite this importance, information about the application of fertilizer to agricultural land is not available in a consistent manner across the United States at a scale useful for regional water-quality assessment. To address this need, an approach is developed to relate commercial fertilizer sales to a set of explanatory variables using spatially referenced modeling methods. Spatially referenced modeling in this study refers to statistically relating fertilizer use, estimated from commercial fertilizer sales data, to spatially referenced data on watershed attributes. Separate models for nitrogen and phosphorus are developed to estimate elemental fertilizer use on agricultural lands for the conterminous United States at the National Hydrography Dataset Plus (NHDPlus) catchment scale for the year 2012. The approach builds on earlier efforts that use Association of American Plant Food Control Officials data on fertilizer sales to provide county-level estimates of nitrogen and phosphorus fertilizer use. The spatially referenced method improves on these efforts by allowing for varying nitrogen to phosphorus ratios at the catchment scale and expanding the set of variables used to allocate county-level sales data to the catchment scale. The models include catchment-level factors that are either primary determinants of fertilizer use, such as the acreage of different crop types, or measures reflecting the intensity of use, such as climate. Explanatory variables available only at the county scale, such as U.S. Department of Agriculture Census of Agriculture estimates of fertilizer expenditures, are included to improve the model predictions of elemental use. The nitrogen and phosphorus models explain more than 90 percent of the variation in elemental use at the state level, and the statistical approach allows for the estimation of uncertainty of predicted use in each catchment. The spatial patterns of model predictions reflect known agricultural cropping practices across the United States that transcend political boundaries, despite the county/state orientation of the fertilizer sales information. The results are expected to be useful for a variety of water-quality assessments that are intended to estimate nitrogen and phosphorus loads to streams.

Scientific Investigations Report↗

USGS2024

Effects of culverts on habitat connectivity in streams—A science synthesis to inform National Environmental Policy Act analyses

The U.S. Geological Survey is working with Federal land management agencies to develop a series of science syntheses to support environmental effects analyses that agencies conduct to comply with the National Environmental Policy Act (NEPA). This report synthesizes science information about the potential effects of culverts on stream connectivity and subsequent effects on fish. We conducted a structured search of published scientific literature to find information about (1) culvert design, installation, and degradation; (2) methods for analyzing culvert condition and quantifying stream connectivity; and (3) the effects of changes to stream connectivity on freshwater fish. We follow the organization first established in U.S. Geological Survey Scientific Investigations Report 2023-5114, in which the report sections align with standard elements of NEPA analyses. We found that, while the effects of dams on stream biota are well documented, smaller barriers at road crossings, like culverts, are prevalent and collectively have a substantial effect on habitat connectivity. Individual culverts differ in the degree to which they impede the movement of aquatic organisms, and we documented methods to assess and estimate the permeability of a culvert, or the ability of aquatic organisms to pass through it. Finally, we outlined methods for using culvert location and permeability information to quantify connectivity in a watershed based on the Dendritic Connectivity Index. Studies have shown that channel constriction, perched outlets, and extreme flow velocities are some of the characteristics of culverts that may hinder aquatic organism passage. Culverts can serve as daily and seasonal barriers to fish, disrupting access to habitat and essential resources like cold water or overwintering refuges. Reduced connectivity can have population-level effects, leading to lower fish species richness and abundance in affected watersheds. Public land managers can use this report by incorporating it by reference in NEPA documentation, as supplemental information, or as a general reference for literature about the effects of culverts on stream connectivity and freshwater fish.

Scientific Investigations Report↗

USGS2018

Brook trout distributional response to unconventional oil and gas development: Landscape context matters

We conducted a large-scale assessment of unconventional oil and gas (UOG) development effects on brook trout ( Salvelinus fontinalis ) distribution. We compiled 2231 brook trout collection records from the Upper Susquehanna River Watershed, USA. We used boosted regression tree (BRT) analysis to predict occurrence probability at the 1:24,000 stream-segment scale as a function of natural and anthropogenic landscape and climatic attributes. We then evaluated the importance of landscape context (i.e., pre-existing natural habitat quality and anthropogenic degradation) in modulating the effects of UOG on brook trout distribution under UOG development scenarios. BRT made use of 5 anthropogenic (28% relative influence) and 7 natural (72% relative influence) variables to model occurrence with a high degree of accuracy [Area Under the Receiver Operating Curve (AUC) = 0.85 and cross-validated AUC = 0.81]. UOG development impacted 11% ( n = 2784) of streams and resulted in a loss of predicted occurrence in 126 (4%). Most streams impacted by UOG had unsuitable underlying natural habitat quality ( n = 1220; 44%). Brook trout were predicted to be absent from an additional 26% ( n = 733) of streams due to pre-existing non-UOG land uses (i.e., agriculture, residential and commercial development, or historic mining). Streams with a predicted and observed (via existing pre- and post-disturbance fish sampling records) loss of occurrence due to UOG tended to have intermediate natural habitat quality and/or intermediate levels of non-UOG stress. Simulated development of permitted but undeveloped UOG wells ( n = 943) resulted in a loss of predicted occurrence in 27 additional streams. Loss of occurrence was strongly dependent upon landscape context, suggesting effects of current and future UOG development are likely most relevant in streams near the probability threshold due to pre-existing habitat degradation.

New York, Pennsylvania↗

USGS2022

Documenting the multiple facets of a subsiding landscape from coastal cities and wetlands to the continental shelf

Land subsidence is a settling, sinking, or collapse of the land surface. In the southeastern United States, subsidence is frequently observed as sinkhole collapse in karst environments, wetland degradation and loss in coastal and other low-lying areas, and inundation of coastal urban communities. Human activities such as fluid extraction, mining, and overburden alteration can cause or exacerbate subsidence, which can result in damage to infrastructure and resources. Subsidence is a hazard that takes place throughout the United States; however, a systematic approach to recognize and develop informed responses to the drivers of subsidence has not yet been fully established. To address this problem, the U.S. Geological Survey (USGS) Southeast Region (SER) funded the gathering of a team of interdisciplinary USGS scientists to promote scientific collaboration. Southeast Region scientists welcomed scientists from other regions (see table 1.1 in Appendix 1) in September 2018 at the St. Petersburg Coastal and Marine Science Center (SPCMSC) in Florida for the first workshop of the Subsidence Flex Team (SFT) (see Appendix 2 for agenda). The SFT set out to review subsidence-related research and technology and develop a unifying framework for describing the processes and hazards associated with land subsidence. A more comprehensive understanding of subsidence hazards could help to inform regional vulnerability assessments that would prove invaluable to the public, community developers, policy makers, and resource managers in both inland and coastal states. The SFT analyzed USGS strengths and weaknesses to identify existing infrastructure and capabilities that could be leveraged to create a comprehensive and far-reaching subsidence-monitoring and mitigation program. Over the course of the 2-day workshop, interdisciplinary understandings of the processes and hazards related to subsidence were explored through individual presentations and group discussion. With all perspectives considered, the SFT recommended that subsidence-related research develop scientific approaches and metrics by which the subsidence component can be isolated and quantified in order to protect both the environment and human infrastructure from harm.

Alabama, Florida, Louisiana, Mississippi↗

USGS2008

Microbial consortia development and microcosm and column experiments for enhanced bioremediation of chlorinated volatile organic compounds, West Branch Canal Creek wetland area, Aberdeen Proving Ground, Maryland

Chlorinated solvents, including 1,1,2,2-tetrachloroethane, tetrachloroethene, trichloroethene, carbon tetrachloride, and chloroform, are reaching land surface in localized areas of focused ground-water discharge (seeps) in a wetland and tidal creek in the West Branch Canal Creek area, Aberdeen Proving Ground, Maryland. In cooperation with the U.S. Army Garrison, Aberdeen Proving Ground, Maryland, the U.S. Geological Survey is developing enhanced bioremediation methods that simulate the natural anaerobic degradation that occurs without intervention in non-seep areas of the wetland. A combination of natural attenuation and enhanced bioremediation could provide a remedy for the discharging ground-water plumes that would minimize disturbance to the sensitive wetland ecosystem. Biostimulation (addition of organic substrate or nutrients) and bioaugmentation (addition of microbial consortium), applied either by direct injection at depth in the wetland sediments or by construction of a permeable reactive mat at the seep surface, were tested as possible methods to enhance anaerobic degradation in the seep areas. For the first phase of developing enhanced bioremediation methods for the contaminant mixtures in the seeps, laboratory studies were conducted to develop a microbial consortium to degrade 1,1,2,2-tetrachloroethane and its chlorinated daughter products under anaerobic conditions, and to test biostimulation and bioaugmentation of wetland sediment and reactive mat matrices in microcosms. The individual components required for the direct injection and reactive mat methods were then combined in column experiments to test them under groundwater- flow rates and contaminant concentrations observed in the field. Results showed that both direct injection and the reactive mat are promising remediation methods, although the success of direct injection likely would depend on adequately distributing and maintaining organic substrate throughout the wetland sediment in the seep area. For bioaugmentation, two mixed anaerobic cultures, named the 'West Branch Consortia' (WBC-1 and WBC-2), were developed by enrichment of wetland sediment collected from two contaminated sites in the study area where rapid and complete reductive dechlorination naturally occurs. WBC are capable of degrading 1,1,2,2-tetrachloroethane, 1,1,2-trichloroethane, 1,2-dichloroethane, tetrachloroethene, trichloroethene, cis- and trans-1,2-dichloroethene, and vinyl chloride to the non-chlorinated end-products ethene and ethane. In addition, the column experiments showed that the consortia could completely degrade carbon tetrachloride and chloroform, although they were not grown on these contaminants. No other cultures are known that can degrade the broad mixture of chlorinated alkanes, alkenes, and methanes as shown for WBC. WBC-2 (suspended in the culture media) is capable of complete dechlorination of 50 micromolar 1,1,2,2-tetrachloroethane to ethene in 1 to 2 days with little transient accumulation of chlorinated daughter products. Only about 5 percent of the clones sequenced from WBC-1 and WBC-2 were related to dechlorinating bacteria that have been studied previously in culture, indicating the presence of unknown dechlorinators. Dehalococcoides spp. comprised about 1 percent of WBC-1 and WBC-2, which is minor compared to the population size of about 30 percent in other dechlorinating consortia for chlorinated alkenes. Although both WBC-1 and WBC-2 showed efficient degradation in laboratory tests in this study, long-term cultivation of WBC-1, which was developed using hydrogen as the organic substrate, was determined to be infeasible. Thus, WBC-2, cultivated with lactate as the organic substrate, would be used in future tests. Nutrient (ammonia and phosphate mixture) addition to anaerobic microcosms constructed with wetland sediment and ground water collected from the study area showed some enhancement in the degradation rate of 1,1,2,2-tetrachloroethane, but degrada

Maryland↗

USGS2017

Assessment of forest degradation in Vietnam using Landsat time series data

Landsat time series data were used to characterize forest degradation in Lam Dong Province, Vietnam. We conducted three types of image change analyses using Landsat time series data to characterize the land cover changes. Our analyses concentrated on the timeframe of 1973–2014, with much emphasis on the latter part of that range. We conducted a field trip through Lam Dong Province to develop a better understanding of the ground conditions of the region, during which we obtained many photographs of representative forest sites with Global Positioning System locations to assist us in our image interpretations. High-resolution Google Earth imagery and Landsat data of the region were used to validate results. In general, our analyses indicated that many land-use changes have occurred throughout Lam Dong Province, including gradual forest to non-forest transitions. Recent changes are most marked along the relatively narrow interfaces between agricultural and forest areas that occur towards the boundaries of the province. One important observation is that the most highly protected national reserves in the region have not changed much over the entire Landsat timeframe (1972–present). Spectral changes within these regions have not occurred at the same levels as those areas adjacent to the reserves.

Forests↗

USGS2013

Between- and within-lake responses of macrophyte richness metrics to shoreline developmen

A quatic habitat in littoral environments can be affected by residential development of shoreline areas. We evaluated the relationship between macrophyte richness metrics and shoreline development to quantify indicator response at 2 spatial scales for Minnesota lakes. First, the response of total, submersed, and sensitive species to shoreline development was evaluated within lakes to quantify macrophyte response as a function of distance to the nearest dock. Within-lake analyses using generalized linear mixed models focused on 3 lakes of comparable size with a minimal influence of watershed land use. Survey points farther from docks had higher total species richness and presence of species sensitive to disturbance. Second, between-lake effects of shoreline development on total, submersed, emergent-floating, and sensitive species were evaluated for 1444 lakes. Generalized linear models were developed for all lakes and stratified subsets to control for lake depth and watershed land use. Between-lake analyses indicated a clear response of macrophyte richness metrics to increasing shoreline development, such that fewer emergent-floating and sensitive species were correlated with increasing density of docks. These trends were particularly evident for deeper lakes with lower watershed development. Our results provide further evidence that shoreline development is associated with degraded aquatic habitat, particularly by illustrating the response of macrophyte richness metrics across multiple lake types and different spatial scales.

Minnesota↗

USGS2007

Assessment of groundwater input and water quality changes impacting natural vegetation in the Loxahatchee River and floodplain ecosystem, Florida

The Loxahatchee River and Estuary are small, shallow, water bodies located in southeastern Florida. Historically, the Northwest Branch (Fork) of the Loxahatchee River was primarily a freshwater system. In 1947, the river inlet at Jupiter was dredged for navigation and has remained permanently open since that time. Drainage patterns within the basin have also been altered significantly due to land development, road construction (e.g., Florida Turnpike), and construction of the C-18 and other canals. These anthropogenic activities along with sea level rise have resulted in significant adverse impacts on the ecosystem over the last several decades, including increased saltwater encroachment and undesired vegetation changes in the floodplain. The problem of saltwater intrusion and vegetation degradation in the Loxahatchee River may be partly induced by diminished freshwater input, from both surface water and ground water into the River system. The overall objective of this project was to assess the seasonal surface water and groundwater interaction and the influence of the biogeochemical characteristics of shallow groundwater and porewater on vegetation health in the Loxahatchee floodplain. The hypothesis tested are: (1) groundwater influx constitutes a significant component of the overall flow of water into the Loxahatchee River; (2) salinity and other chemical constituents in shallow groundwater and porewater of the river floodplain may affect the distribution and health of the floodplain vegetation.

Florida↗

USGS2009

Factors influencing tropical island freshwater fishes:Species, status, and management implications in puerto rico [Factores que influencian a los peces tropicales de agua dulce: Especies, estado actual e implicaciones para el manejo en Puerto Rico]

Anthropogenic effects including river regulation, watershed development, contamination, and fish introductions have substantially affected the majority of freshwater habitats in Europe and North America. This pattern of resource development and degradation is widespread in the tropics, and often little is known about the resources before they are lost. This article describes the freshwater resources of Puerto Rico and identifies factors that threaten conservation of native fishes. The fishes found in freshwater habitats of Puerto Rico represent a moderately diverse assemblage composed of 14 orders, 29 families, and 82 species. There are fewer than 10 species of native peripherally-freshwater fish that require a link to marine systems. Introductions of nonindigenous species have greatly expanded fish diversity in freshwater systems, and native estuarine and marine species (18 families) also commonly enter lowland rivers and brackish lagoons. Environmental alterations, including land use and development, stream channelization, pollution, and the impoundment of rivers, combined with nonnative species introductions threaten the health and sustainability of aquatic resources in Puerto Rico. Six principal areas for attention that are important influences on the current and future status of the freshwater fish resources of Puerto Rico are identified and discussed.

Fisheries↗

USGS2010

Methylmercury cycling, bioaccumulation, and export from agricultural and non-agricultural wetlands in the Yolo Bypass

This 18-month field study addresses the seasonal and spatial patterns and processes controlling methylmercury (MeHg) production, bioaccumulation, and export from natural and agricultural wetlands of the Yolo Bypass Wildlife Area (YBWA). The data were collected in conjuntion with a Proposition 40 grant from the State Water Resources Control Board in support of the development of Best Management Practices (BMP's) for reducing MeHg loading from agricultural lands in the wetland-dominated Yolo Bypass to the Sacramento-San Joaquin River Delta. The four managemenr-based questions addressed in this study were: 1. Is there a different among agricultural and managfed wetland types in terms of Me Hg dynamic (production, degradation, bioaccumulation, or export)? 2. Does water residence time influence MeHg dynamics? 3. Does the application of sulfate-based fertilizer impact MeHg production rates? 4. Does the presence (or absence) of vegetation influence MeHg production rates? Measurements of MeHg concentrations in sediment, water, and biota (plants, invertebrates, and fish) were made to assess management-level patterns in five wetland types, which included three type of shallowly-flooded agricultural wetlands (white rice, wild rice, and fallow) and two types of managed wetlands (permanently and seasonally flooded). To strengthen our understanding of the processes underlying the seasonal and spatial patterns of MeHg cycling, additional exploratory factors were measured including ancillary sediment and water quality parameters, stable isotope fractionation (oxygen, sulfur, carbon, and nitrogen), photodemethylation rates, and daily-integrated hydrologic budgets. Samples and field data were collected from May 2007 to July 2008, and nearly all sample analyses were completed by September 2008 as per the Quality Assurance Program Plan (QAPP) requirements. Although wetland type was a major factor that drove the study design, within-field hydrology also proved to be an important factor controlling aqueous MeHg and total mercury (THg) concentrations and export. Overall, agricultural wetlands exhibited higher MeHg concentrations in overlying water, sediment, and biota than did managed seasonal and permanent wetlands. This appears to be partly due to higher rates of sediment in microbial production of MeHg on agricultural wetlands during the fall through spring period. Both sulfate- and iron-reducing bacteria have been implicated in the MeHg production process, and both were demonstrably active in all wetlands studied; however, sulfate-reducing bacteria were not stimulated by the addition of sulfate-based fertilizer to agricultural wetlands, suggesting that easily-degraded (labile) organic matter, rather than sulfate, was limiting their activity in these field types. The data suggest that agriculturally-managed soils promoted MeHg production through 1) enhanced microbial activity via higher temperatures and larger pools of labile carbon, and 2) enhanced pools of microbially available inorganic divalent mercury (Hg(II)) resulting from a decrease in reduced-sulfur, solid-phase minerals under oxic or only mildly reducing conditions. MeHg mass balances were assessed by comparing filed-specific MeHg loads for inlets vs. outlet flows. The overall mass balance for MeHg in surface water during the summer irrigation period (June - September 2007) indicated little to no net MeHg export from the six agricultural wetlands taken as a whole. Of the six agricultural wetlands, there was net overall MeHg export from two fields (one fallow and one white rice) during August, and from four of the six fields (one fallow, one white rice, and two wild rice) during September) Over the entire summer irrigation period, two of the fields (one fallow and one wild rive) showed net MeHg export, and the other four fields showed wither net import or no significant change. Rates of measured photomethylation and exchange between sediment and water pools suggest that both processes may be responsible for the lack of MeHg export. Despite significant differences during winter months between fields in surface water concentrations of MeHg, MeHg loads were not calculated in mid-winter because flood waters had overtopped field boundaries and field fidelity could not be established. During the summer 2007 irrigation season, surface water out-flows from agricultural wetlands were 9%-36% of inlet flows, and evaporation rates explained most of this water loss, with infiltration likely accounting for the remainder. Unfiltered aqueous MeHg concentrations increased from <1 ng L -1 in source waters to up to 10 ng L -1 in agricultural wetland drains during the summer irrigation period. Increases in solute concentration caused by evapoconcentration were estimated by determining concentration factors (outflow/inflow) for chloride (a conservative dissolved constituent) and by measuring oxygen isotope ratios ( 18 O/ 16 O, expressed as δ 18 O) in water. Increases in MeHg concentration from inflows-to-outflows exceeded those caused by evapoconcentration on several fields during the summer irrigation season. This was especially true when initial surface water MeHg concentrations were low, as seen in the southern block of fields receiving irrigation water directly from the Toe Drain. The northern block of fields received irrigation water from Greens Lake, which included Toe Drain water plus recirculated drain water from other agricultural fields within the Yolo Bypass and west of the Yolo Bypass; as such, the northern fields showed a smaller percentage increase in MeHg concentration because initial MeHg concentrations in surface water inflows were greater than in inputs to the southern fields. Mercury concentrations in fish were greater in agricultural wetlands white rice and wild rice) than in the two permanently flooded wetlands. Additionally, Hg concentrations in biota showed a general increase from inlets to outlets withing agricultural wetlands, but not within permanent wetlands. This was particular evident in white rice fields where caged western mosquitofish at the outlets had Hg concentrations that were more than 4 times higher than in caged fish held at the inlets. Similar spatial patterns in Hg bioaccumulation in agricultural and permanent wetlands were seen for wild populations of western mosquitofish and Mississippi silversides. In contrast to fish, invertebrates, such as water-boatman (Corixidae) and back swimmers (Notonectidae), had greater Hg concentrations in permanent wetlands than in tempoarirly flooded agricultural wetlands, Fish THg concentrations were weakly correlated with water MeHg,a and not correlated with sediment MeHg. In contrast, invertebrate MeHg concentrations were more strongly correlated with sediment MeHg than with water MeHg concentrations. These results illustrate the complexity of MeHg bioaccumulation through food webs and indicate the importance of simultaneously using multiple biosentinels when monitoring MeHg production and bioaccumulation. Despite high sediment production rates and water concentrations in agricultural wetlands, MeHg export was physically limited by hydrologic export for all wetlands studied. We suggest that load reduction is maximized by limiting water throughout, but that on-site biota exposure is maximized by this loner water residence time. While field-specific hydrologic loads could not be fully quantified during flood conditions in February 2008, we suggest that the primary period of MeHg export from Yolo Bypass Wildlife Area is during those winter flooding periods when overall microbial activity and MeHg production in agricultural soils is fueled by the decomposition of rice straw, and when hydrologic flowthrough is maximal. Local stakeholders participated in two workshops related to this study, demonstrating an interest in understanding factors controlling MeHg production, export, and bioaccumulation. The results of this field study show that permanently flooded, naturally vegetated wetlands are unlikely to a large source of MeHg production within the YBWA, in contrast with agriculturally-managed wetlands. MeHg loading to Toe Drain waters of the Yolo Bypass may be reduced by lowering rated of hydrologic export from agricultural wetlands during the growing season and especially during rice harvest, However, under these water-holding conditions, biota living within agricultural wetlands may thus be exposed to higher MeHg concentrations in surface water, As observed in this study, rapid bioacculumaltion over a 2-month period led to MeHg concentrations in invertebrates and fish more than 6 and 11 times higher, respectively, than proposed TMDL target values to protect wildlife (0.03 ppm ww). The results of this field study, together with the information from YBWA stakeholders, provide a more definitive understanding of how MeHg cycling and bioaccumulation respond to habitat differences and specific management practices. These results directly address 4 core components of CBDA's Mercury Strategy for the Bay-Delta Ecosystem (Wiener et al., 2003a): a) Quantification and evaluation of THg and MeHg sources, b) Quantification of effects of ecosystem restoration on MeHg exposure, c) Assessment of ecological risk, and d) Identification and testing of potential management approaches for reducing MeHg contamination. In addition, the quantitative results reported here assess the effect of current land use practices in the Yolo Bypass MeHg production, bioaccumulation and export, and provide process-based advice towards achieving current goals of the RWQCB-CVR's Sacramento -- San Joaquin Delta Estuary TMDL for Methyl & Total Mercury (Wood et al., 2010b). Further work is necessary to evaluate biotic exposure in the Yolo Bypass Wildlife Area at higher trophic levels (e.g. birds), to quantify winter hydrologic flux of MeHg to the larger Delta ecosystem, and to evaluate rice straw management options to limit labile carbon supplies to surface sediment during winter months. In summary, agricultural management of rice fields -- specifically the periodic flooding and production of easily degraded organic matter -- promotes the production of MeHg beyond rates seen in naturally vegetated wetlands, whether seasonally or permanently flooded., The exported load from MeHg from these agricultural wetlands may be controlled by limiting hydrologic export from fields to enhance on-site MeHg removal processes, but the tradeoff is that this impoundement increases Me Hg exposure to resident organisms.

California↗

USGS2009

Quality of Streams in Johnson County, Kansas, and Relations to Environmental Variables, 2003-07

The quality of streams and relations to environmental variables in Johnson County, northeastern Kansas, were evaluated using water, streambed sediment, land use, streamflow, habitat, algal periphyton (benthic algae), and benthic macroinvertebrate data. Water, streambed sediment, and macroinvertebrate samples were collected in March 2007 during base flow at 20 stream sites that represent 11 different watersheds in the county. In addition, algal periphyton samples were collected twice (spring and summer 2007) at one-half of the sites. Environmental data including water and streambed-sediment chemistry data (primarily nutrients, fecal-indicator bacteria, and organic wastewater compounds), land use, streamflow, and habitat data were used in statistical analyses to evaluate relations between biological conditions and variables that may affect them. This report includes an evaluation of water and streambed-sediment chemistry, assessment of habitat conditions, comparison of biological community attributes (such as composition, diversity, and abundance) among sampling sites, placement of sampling sites into impairment categories, evaluation of biological data relative to environmental variables, and evaluation of changes in biological communities and effects of urbanization. This evaluation is useful for understanding factors that affect stream quality, for improving water-quality management programs, and for documenting changing conditions over time. The information will become increasingly important for protecting streams in the future as urbanization continues. Results of this study indicate that the biological quality at nearly all biological sampling sites in Johnson County has some level of impairment. Periphyton taxa generally were indicative of somewhat degraded conditions with small to moderate amounts of organic enrichment. Camp Branch in the Blue River watershed was the only site that met State criteria for full support of aquatic life in 2007. Since 2003, biological quality improved at one rural sampling site, possibly because of changes in wastewater affecting the site, and declined at three urban sites possibly because of the combined effects of ongoing development. Rural streams in the western and southern parts of the county, with land-use conditions similar to those found at the State reference site (Captain Creek), continue to support some organisms normally associated with healthy streams. Several environmental factors contribute to biological indicators of stream quality. The primary factor explaining biological quality at sites in Johnson County was the amount of urbanization upstream in the watershed. Specific conductance of stream water, which is a measure of dissolved solids in water and is determined primarily by the amount of groundwater contributing to streamflow, the amount of urbanization, and discharges from wastewater and industrial sites, was strongly negatively correlated with biological stream quality as indicated by macroinvertebrate metrics. Concentration of polycyclic aromatic hydrocarbons (PAHs) in streambed sediment also was negatively correlated with biological stream quality. Individual habitat variables that most commonly were positively correlated with biological indicators included stream sinuosity, buffer length, and substrate cover diversity. Riffle substrate embeddedness and sediment deposition commonly were negatively correlated with favorable metric scores. Statistical analysis indicated that specific conductance, impervious surface area (a measure of urbanization), and stream sinuosity explained 85 percent of the variance in macroinvertebrate communities. Management practices affecting environmental variables that appear to be most important for Johnson County streams include protection of stream corridors, measures that reduce the effects of impervious surfaces associated with urbanization, reduction of dissolved solids in stream water, reduction of PAHs entering streams and

Scientific Investigations Report↗

USGS2021

Protocol for route restoration in California’s desert renewable energy conservation plan area

In the deserts of the Southwestern United States, increased off-highway vehicle use can lead to widespread vehicular damage to desert ecosystems. As the popularity and intensity of vehicle use on public lands continues, the Bureau of Land Management (BLM) is challenged to manage the routes used by recreationists while minimizing activity beyond designated routes and mitigating environmental impacts. Ecosystem function and habitat quality can be degraded by vehicle activities, especially when the activities are occurring outside authorized routes or authorized open areas. Restoration mitigates damage to soils and vegetation; however, methods vary across the desert, results appear to be inconsistent, and standardized monitoring plans do not exist. The Desert Renewable Energy Conservation Plan Land Use Plan Amendment to the California Desert Conservation Area Land Use Plan identified the need for, and directed implementation of, standardized monitoring of restoration, which includes minimizing surface disturbance to agency prescribed levels in areas of critical environmental concern and on California Desert National Conservation Lands. To assist the BLM in implementing the Desert Renewable Energy Conservation Plan Land Use Plan Amendment, we define ecological restoration as the process of halting or minimizing future degradation while simultaneously assisting the recovery of ecosystem function and community composition in relation to intact reference sites. The monitoring strategies provided in this protocol are used to restore degraded ecosystems after use of non-routes has ceased (non-designated routes or vehicle-caused linear disturbances) by applying techniques to improve edaphic properties, hydrologic function, and biotic community composition. This protocol also provides criteria that can be used to distinguish the status of non-routes and land parcels as “restored” or “disturbed.” This protocol was developed by the U.S. Geological Survey, in collaboration with BLM restoration practitioners, to identify standard restoration methods and establish criteria to determine when restoration is achieved. This protocol also develops new methods to increase restoration rates and successes on public lands in the southern California deserts. BLM’s long-term implementation plan for the evaluation of road restoration described in this report is to transition toward managing the work, including developing the workforce and long-term storage and management of the data during the next several years. This report is intended to be regularly updated as the program develops.

California↗

USGS2022

Woody plant encroachment of grassland and the reversibility of shrub dominance: Erosion, fire, and feedback processes

Many grass-dominated ecosystems in dryland regions have experienced increasing woody plant density and abundance during the past century. In many cases, this process has led to land degradation and declines in ecosystem functions. An example is the Chihuahuan Desert in the southwestern United States, which experienced different stages of shrub encroachment in the past 150 years. Among a wide variety of mechanisms to explain the grass–shrub transitions in this dryland system, soil erosion (both wind and water) and fire are particularly well studied. Here, we synthesize recent developments on the drivers and feedback in the process of shrub encroachment in the Chihuahuan Desert through the intercomparison of two Long Term Ecological Research (LTER) sites, namely Jornada and Sevilleta. Experimental and modeling studies support a conceptual framework, which underscores the important roles of erosion and fire in woody plant encroachment. Collectively, research at the Jornada LTER provided complementary, quantitative support to the well-known fertile-islands framework. Studies at the Sevilleta LTER expanded the framework, adding fire as a major disturbance to woody plants. Conceptual models derived from the synthesis represent the general understanding of shrub encroachment that emerged from research at these two sites, and can guide management interventions aimed at reducing or mitigating undesirable ecosystem state change in many other drylands worldwide.

New Mexico↗