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Results for “Integrative Biology”

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At least 109 records · Page 6Linked to original sources
USGS2008

Central Colorado Assessment Project - Application of integrated geologic, geochemical, biologic, and mineral resource studies

Central Colorado is one of the fastest-growing regions in the Western United States. Population along the Front Range increased more than 30 percent between 1990 and 2000 (http://www.demographia.com/db-metro3newworld.htm) with some counties within the study area, such as Park County, experiencing greater than 100-percent growth (http://www.censusscope.org/us/s8/rank_popl_growth.html). This growth has caused tremendous demand for natural resources and has created challenging land-management issues related to the interface between wilderness and urban expansion. Management of this wilderness/urban interface will benefit from current digital geoscience information collected by the U.S. Geological Survey (USGS) Central Colorado Assessment Project that began in 2003. Approximately 20,800 square miles (53,800 km2) of land divided almost equally between the public and private sectors were part of the assessment. The study area includes much of the Colorado Mineral Belt, a northeast-trending zone that contains 30 economically significant metal deposits. Historically, the area provided much of Colorado's metal production. The only active gold and molybdenum mines in Colorado lie within the study area. Recently, metal and uranium exploration activity has increased sharply in response to record prices for metals and uranium. This further underscores the need for up-to-date geoscience information presented in compatible GIS databases to facilitate rapid land-management decisions. Cooperative studies by USDA Forest Service, National Park Service supported by the USGS Mineral Resources Program (MRP), and National Cooperative Geologic Mapping Programs (NCGMP) contributed to the mineral-resource assessment and included regional geologic mapping at the scale 1:100,000, collection and geochemical studies of stream sediments, surface water, and bedrock samples, macroinvertebrate and biofilm studies in the riparian environment, remote-sensing studies, and geochronology. Geoscience information available as GIS layers has improved understanding of the distribution of metallic, industrial, and aggregate resources, location of areas that have potential for their discovery or development, helped to understand the relation of tectonics, magmatism, and paleohydrology to the genesis of the metal deposits in the region, and provided insight on the geochemical and environmental effects that historical mining and natural, mineralized rock exposures have on surface water, ground water, and aquatic life.

Fact Sheet↗
USGS2003

Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: Integrating hydrologic and biological processes using sediment perfusion cores

Inorganic N transformations were examined in streambed sediments from the Shingobee River using sediment perfusion cores. The experimental design simulated groundwater-stream water mixing within sediment cores, which provided a well-defined one-dimensional representation of in situ hydrologic conditions. Two distinct hydrologic and chemical settings were preserved in the sediment cores: the lowermost sediments, perfused with groundwater, remained anaerobic during the incubations, whereas the uppermost sediments, perfused with oxic water pumped from the overlying water column, simulated stream water penetration into the bed. The maintenance of oxic and anoxic zones formed a biologically active aerobic-anaerobic interface. Ammonium (NH4+) dissolved in groundwater was transported conservatively through the lower core zone but was removed as it mixed with aerated recycle water. Concurrently, a small quantity of nitrate (NO3-) equaling ???25% of the NH4+ loss was produced in the upper sediments. The NH4+ and NO3- profiles in the uppermost sediments resulted from coupled nitrification-denitrification, because assimilation and sorption were negligible. We hypothesize that anaerobic microsites within the aerated upper sediments supported denitrification. Rates of nitrification and denitrification in the perfusion cores ranged 42-209 and 53-160 mg N m-2 day-1, respectively. The use of modified perfusion cores permitted the identification and quantification of N transformations and verified process control by surface water exchange into the shallow hyporheic zone of the Shingobee River.

Minnesota↗
USGS2004

Fort Collins Science Center: Policy Analysis and Science Assistance

Most resource management decisions involve the integrated use of biological, sociological, and economic information. Combining this information provides a more comprehensive basis for making effective land management and conservation decisions. Toward this end, scientists in the Policy Analysis and Science Assistance Branch (PASA) of the Fort Collins Science Center (FORT) contribute expert knowledge for natural resources management by conducting biological, social, economic, and institutional analyses of conservation policies and management practices. PASA's mission is to integrate biological, social, and economic research so that resource managers can use the resulting information to make informed decisions and resolve resource management conflicts. PASA scientists pursue and conduct scientific analyses that help agencies and Native American tribes to (1) identify impending policy controversies and areas where social and natural science research is needed to address future policy questions; (2) develop methods and approaches to assist researchers in preparing scientific evidence; (3) assess habitat alteration in a manner consistent with policy needs; and (4) evaluate policy options. Branch scientists also evaluate policy options (e.g., effects of different land treatments, fish and wildlife management practices, or visitor/recreation management practices) in response to specific questions faced by policymakers and managers.

Fact Sheet↗
USGS2017

Biological relevance of streamflow metrics: Regional and national perspectives

Protecting the health of streams and rivers requires identifying ecologically significant attributes of the natural flow regime. Streamflow regimes are routinely quantified using a plethora of hydrologic metrics (HMs), most of which have unknown relevance to biological communities. At regional and national scales, we evaluated which of 509 commonly used HMs were associated with biological indicators of fish and invertebrate community integrity. We quantified alteration of each HM by using statistical models to predict site-specific natural baseline values for each of 728 sites across the USA where streamflow monitoring data were available concurrent with assessments of invertebrate or fish community integrity. We then ranked HMs according to their individual association with biological integrity based on random forest models that included HMs and other relevant covariates, such as land cover and stream chemistry. HMs were generally the most important predictors of biological integrity relative to the covariates. At a national scale, the most influential HMs were measures of depleted high flows, homogenization of flows, and erratic flows. Unique combinations of biologically relevant HMs were apparent among regions. We discuss the implications of our findings to the challenge of selecting HMs for streamflow research and management.

Freshwater Science↗
USGS2010

Fort Collins Science Center- Policy Analysis and Science Assistance Branch : Integrating social, behavioral, economic and biological sciences

The Fort Collins Science Center's Policy Analysis and Science Assistance (PASA) Branch is a team of approximately 22 scientists, technicians, and graduate student researchers. PASA provides unique capabilities in the U.S. Geological Survey by leading projects that integrate social, behavioral, economic, and biological analyses in the context of human-natural resource interactions. Resource planners, managers, and policymakers in the U.S. Departments of the Interior (DOI) and Agriculture (USDA), State and local agencies, as well as international agencies use information from PASA studies to make informed natural resource management and policy decisions. PASA scientists' primary functions are to conduct both theoretical and applied social science research, provide technical assistance, and offer training to advance performance in policy relevant research areas. Management and research issues associated with human-resource interactions typically occur in a unique context, involve difficult to access populations, require knowledge of both natural/biological science in addition to social science, and require the skill to integrate multiple science disciplines. In response to these difficult contexts, PASA researchers apply traditional and state-of-the-art social science methods drawing from the fields of sociology, demography, economics, political science, communications, social-psychology, and applied industrial organization psychology. Social science methods work in concert with our rangeland/agricultural management, wildlife, ecology, and biology capabilities. The goal of PASA's research is to enhance natural resource management, agency functions, policies, and decision-making. Our research is organized into four broad areas of study.

Fact Sheet↗
USGS2019

Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network

This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as the associated costs and limitations. Hydrologic technicians were trained in eDNA sampling protocols and they collected samples during routine monthly visits to streamgages over an entire water year (2016). We analyzed the eDNA in the filtered water samples to determine the presence of two fish species: bull trout and rainbow trout. We then modeled the spatiotemporal distribution of each species using discharge and temperature data. To assess the influence of the spatial distribution of the gages on the biological information obtained, we also collected eDNA samples from locations between the gages three times during the water year. We found eDNA monitoring at the five gages provided meaningful information about the distribution of both species, especially when detection probabilities accounted for variations in temperature and discharge. Sampling between the gages provided additional information about bull trout distribution — the rarer of the two species. Our study suggests the integration of eDNA sampling into a streamgage network is feasible and could provide a novel and powerful source of biological information for riverine ecosystems in the U.S.

Idaho, Nebraska↗
USGS2022

Africa’s drylands in a changing world: Challenges for wildlife conservation under climate and land-use changes in the Greater Etosha Landscape

Proclaimed in 1907, Etosha National Park in northern Namibia is an iconic dryland system with a rich history of wildlife conservation and research. A recent research symposium on wildlife conservation in the Greater Etosha Landscape (GEL) highlighted increased concern of how intensification of global change will affect wildlife conservation based on participant responses to a questionnaire. The GEL includes Etosha and surrounding areas, the latter divided by a veterinary fence into large, private farms to the south and communal areas of residential and farming land to the north. Here, we leverage our knowledge of this ecosystem to provide insight into the broader challenges facing wildlife conservation in this vulnerable dryland environment. We first look backward, summarizing the history of wildlife conservation and research trends in the GEL based on a literature review, providing a broad-scale understanding of the socioecological processes that drive dryland system dynamics. We then look forward, focusing on eight key areas of challenge and opportunity for this ecosystem: climate change, water availability and quality, vegetation and fire management, adaptability of wildlife populations, disease risk, human-wildlife conflict, wildlife crime, and human dimensions of wildlife conservation. Using this model system, we summarize key lessons and identify critical threats highlighting future research needs to support wildlife management. Research in the GEL has followed a trajectory seen elsewhere reflecting an increase in complexity and integration across biological scales over time. Yet, despite these trends, a gap exists between the scope of recent research efforts and the needs of wildlife conservation to adapt to climate and land-use changes. Given the complex nature of climate change, in addition to locally existing system stressors, a framework of forward-thinking adaptive management to address these challenges, supported by integrative and multidisciplinary research could be beneficial. One critical area for growth is to better integrate research and wildlife management across land-use types. Such efforts have the potential to support wildlife conservation efforts and human development goals, while building resilience against the impacts of climate change. While our conclusions reflect the specifics of the GEL ecosystem, they have direct relevance for other African dryland systems impacted by global change.

Africa, Greater Etosha Landscape↗
USGS2000

What is “natural”? : Yellowstone elk population - A case study

Ecology analyzes the structure and function of ecosystems at all points along the continuum of human disturbance, from so-called pristine forests to urban backyards. Undisturbed systems provide reference points at one end of the spectrum, and nature reserves and parks are highly valued because they can provide unique examples of such ecosystems. Unfortunately the concept of “natural” or pristine is not that easy to define. Indeed, although ecologists have considered pre-Columbian, western-hemisphere ecosystems to have been largely unaltered by human action, and have termed their state “natural” or “pristine,” evidence from archaeology challenges this view. U.S. and Canadian national parks are charged with preserving the “natural,” and thus need to be able to understand and manage for the “natural.” A pivotal “natural” question in Yellowstone National Park management is the size of the northern-range, wintering elk population at Park establishment in 1872, argued both to have been small and large. Integrating and quantifying several sources of evidence provides a consistent picture of a low population (ca. 5,000–6,000), largely migrating out of the northern range in winter, with little vegetation impact. If we accept this conclusion about what is natural for the Yellowstone ecosystem, then it dramatically alters how we view management alternatives for the Park, which currently supports a northern wintering herd of up to ˜ 25,000 elk.

Wyoming↗
USGS2022

Integrated assessment of chemical and biological recovery after diversion and treatment of acid mine drainage in a Rocky Mountain stream

Responses of stream ecosystems to gradual reductions in metal loading following remediation or restoration activities have been well documented in the literature. However, much less is known about how these systems respond to the immediate or more rapid elimination of metal inputs. Construction of a water treatment plant on the North Fork of Clear Creek (NFCC; CO, USA), a US Environmental Protection Agency Superfund site, captured, diverted, and treated the two major point-source inputs of acid mine drainage (AMD) and provided an opportunity to investigate immediate improvements in water quality. We conducted a 9-year study that included intensive within- and among-year monitoring of receiving-stream chemistry and benthic communities before and after construction of the treatment plant. Results showed a 64%–86% decrease in metal concentrations within months at the most contaminated sites. Benthic communities responded with increased abundance and diversity, but downstream stations remained impaired relative to reference conditions, with significantly lower taxonomic richness represented by a few dominant taxa (i.e., Baetis sp., Hydropsyche sp., Simulium sp., Orthocladiinae). Elevated metal concentrations from apparent residual sources, and relatively high conductivity from contributing major ions not removed during the treatment process, are likely limiting downstream recovery. Our study demonstrates that direct AMD treatment can rapidly improve water quality and benefit aquatic life, but effectiveness is limited, in part, to the extent that inputs of metals are captured and treated. Consideration should also be given to the effects of elevated major ion concentrations from the treated effluent not removed during the lime treatment process. Continued chemical and biological monitoring will be needed to quantify the NFCC recovery trajectory and to inform future remediation strategies.

Colorado↗
USGS2021

Fluvial Egg Drift Simulator (FluEgg) user’s manual

The Fluvial Egg Drift Simulator (FluEgg) was developed to simulate the transport and dispersion of invasive carp eggs and larvae in a river. FluEgg currently (2020) supports modeling of bighead carp ( Hypophthalmichthys nobilis ), silver carp ( H. molitrix ), and grass carp ( Ctenopharyngodon idella ), with the planned addition of black carp ( Mylopharyngodon piceus ) once developmental data are available. FluEgg integrates the biological development of invasive carp eggs and larvae with a particle transport model that simulates the advection and dispersion of the eggs and larvae based on user-supplied one-dimensional hydraulic conditions. FluEgg can be used to evaluate the hydrodynamic suitability of a river for invasive carp spawning, to inform sampling and monitoring efforts, and to identify the most likely spawning areas of captured eggs or larvae.

Open-File Report↗
USGS2024

Turning setbacks into stepping-stones for growth in conservation paleobiology

Conservation paleobiology is a cross-disciplinary field that utilizes the geohistorical record of past life on Earth to inform present-day decisions in conservation and restoration and assist in planning for future natural resource management. However, information on how past ecosystems and species responded to environmental change over decadal to millennial timescales is rarely incorporated into conservation and restoration decision-making. To heighten awareness among conservation and restoration practitioners of the relevance of geohistorical data and to bridge the gap between research and implementation in conservation paleobiology, we proposed a Research Topic titled “ Integrating Conservation Biology and Paleobiology to Manage Biodiversity and Ecosystems in a Changing World ”. The 21 articles subsequently published demonstrate the diversity and breadth of geohistorical information available to resource management and the challenges of translating these results into conservation practice and policy. Here we discuss the lessons we learned from editing the Research Topic and suggest a pathway forward for conservation paleobiologists who aspire to generate actionable research results to solve current problems in biodiversity conservation and ecological restoration.

Frontiers in Ecology and Evolution↗
USGS2014

Symbiotic regulation of plant growth, development and reproduction

The growth and development of rice ( Oryzae sativa ) seedlings was shown to be regulated epigenetically by a fungal endophyte. In contrast to un-inoculated (nonsymbiotic) plants, endophyte colonized (symbiotic) plants preferentially allocated resources into root growth until root hairs were well established. During that time symbiotic roots expanded at five times the rate observed in nonsymbiotic plants. Endophytes also influenced sexual reproduction of mature big sagebrush ( Artemisia tridentata ) plants. Two spatially distinct big sagebrush subspecies and their hybrids were symbiotic with unique fungal endophytes, despite being separated by only 380m distance and 60 m elevation. A double reciprocal transplant experiment of parental and hybrid plants, and soils across the hybrid zone showed that fungal endophytes interact with the soils and different plant genotypes to confer enhanced plant reproduction in soil native to the endophyte and reduced reproduction in soil alien to the endophyte. Moreover, the most prevalent endophyte of the hybrid zone reduced the fitness of both parental subspecies. Because these endophytes are passed to the next generation of plants on seed coats, this interaction provides a selective advantage, habitat specificity, and the means of restricting gene flow, thereby making the hybrid zone stable, narrow, and potentially leading to speciation.

Communitative and Integrative Biology↗
USGS2009

Fishway evaluations for better bioengineering: An integrative approach

Effective fishway design requires extensive integration of biological and hydraulic data. Many relevant biological parameters remain poorly characterized, however, and the lack of adequate biological data has long been recognized as a central weakness in fish passage technology. This is of particular concern given the growing recognition of the importance of passing a broad diversity of species. Part of the reason for this weakness is the difficulty of identifying relevant biological, hydraulic, and other physical parameters. We propose that by both exploring questions suggested by current knowledge, and also by increasing the frequency and refining the methods with which fishways are evaluated, two results can be achieved: our understanding of design effectiveness can be improved, and research questions can be prioritized through adaptive management. We describe a framework and rationale for fishway evaluations that identifies several promising avenues of research. Understanding correlates of passage performance is increasingly important as fish passage needs expand on a global scale.

Book chapter↗
USGS2011

Weeds of Hawaii’s lands devoted to watershed protection and biodiversity conservation: Role of biological control as the missing piece in an integrated pest management strategy

Despite Hawaii’s reputation as an extinction icon, significant biological resources remain, especially in watersheds, natural areas, and specialized edaphic sites (e.g., lava dry forest, coastal). While direct habitat destruction by humans continues, human-facilitated biological invaders are currently the primary agents of continuing degradation. The ability of invasive plants to have prolific seed production, efficient dispersal systems, and to become established in dense vegetation, complicated by Hawaii’s rugged topography, appears to render mechanical and chemical control as mere holding actions. Costly, ‘environmentally unfriendly’, and often ineffective, strategies using chemical and mechanical control on a large scale, despite the most valiant of efforts, can be viewed simply as attempts to buy time. Without increased levels of safely tested biological control, the seemingly inevitable result is the landscape level transformation of native forests, with potentially catastrophic consequences to cultural, biological, water, and economic resources. Increased levels of effective biological control for certain intractable invasive species appear to comprise a conspicuous ‘missing piece’ in our efforts to protect Hawaiian watersheds and other conservation lands.

Hawaii↗
USGS2022

Updates for Wake Atoll biosecurity management, biological control, survey, and management, and integrated pest management plans

Pests and invasive species have been defined as any organism that can have real or perceived adverse effects on operations, or the well-being of personnel, native plants, animals, their environment and ecosystem processes; attack or damage real property, supplies, equipment, or are otherwise undesirable (paraphrased from many sources including 53 Federal Register [FR] 15975, May 4, 1988, as amended at 78 FR 13507, February 28, 2013). Biosecurity programs and pest management plans can be developed and implemented with the goals of preventing the arrival of or eradication or control of pests and invasive species to reduce the potential for adverse effects. Such plans have been developed for Wake Atoll (U.S. Air Force, unpub. data 2017). Periodic plan reviews are an integral step for evaluating plan efficacy and updating plans with new information for improving plan effectiveness. This report summarizes an evaluation of past, current, and potential biosecurity and pest management for Wake with the intent this information can be used for updating existing plans. This document was prepared in cooperation with the U.S. Air Force (USAF) and surveys were performed for the 611th Civil Engineer Squadron Natural Resources Program ACES PROJECT no. YGFZ17002 under agreement number F2MUAA7116GW01 between the USAF and the U.S. Geological Survey’s Western Ecological Research Center (USGS-WERC).

Open-File Report↗
USGS2011

Making United States Integrated Ocean Observing System (U.S. IOOS) inclusive of marine biological resources

An important Data Management and Communication (DMAC) goal is to enable a multi-disciplinary view of the ocean environment by facilitating discovery and integration of data from various sources, projects and scientific domains. United States Integrated Ocean Observing System (U.S. IOOS) DMAC functional requirements are based upon guidelines for standardized data access services, data formats, metadata, controlled vocabularies, and other conventions. So far, the data integration effort has focused on geophysical U.S. IOOS core variables such as temperature, salinity, ocean currents, etc. The IOOS Biological Observations Project is addressing the DMAC requirements that pertain to biological observations standards and interoperability applicable to U.S. IOOS and to various observing systems. Biological observations are highly heterogeneous and the variety of formats, logical structures, and sampling methods create significant challenges. Here we describe an informatics framework for biological observing data (e.g. species presence/absence and abundance data) that will expand information content and reconcile standards for the representation and integration of these biological observations for users to maximize the value of these observing data. We further propose that the approach described can be applied to other datasets generated in scientific observing surveys and will provide a vehicle for wider dissemination of biological observing data. We propose to employ data definition conventions that are well understood in U.S. IOOS and to combine these with ratified terminologies, policies and guidelines.

Conference Paper↗