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Design and documentation of a Baltimore-Washington regional spatial database testbed for environmental model calibration and verification

Recent efforts by scientists and managers to inventory, map, and model impacts of human activities on the environment have focused on land transformation and urbanization processes. To test the efficacy of any single model, algorithm or procedure which defines land transformation processes a standard database calibration reference resource is required. Therefore, a set of georeferenced, spatially structured and well documented data sets has been designed for the Baltimore-Washington Region as a test and evaluation resource for the community of environmental modelers and global change scientists. Land transformation processes are being examined from a variety of perspectives and scales using a variety of indicator parameters and mensuration variables. Tools and techniques applied to land transformation assessments range from creation of simple population expansion maps to change detection calculations using remotely sensed satellite data. A variety of point and cell growth models have been applied to simulate the land transformation phenomenon. These activities have demonstrated the reality that urbanization and land transformation processes involve complex interacting variables. A team of scientists are expanding the efforts of the USGS Human Impacts on Land Transformation (HILT) project to build an Internet accessible "collaboratory" containing quality controlled spatially referenced calibration and validation databases. The Baltimore-Washington Regional Testbed provides for the calibration, verification, and validation for multiple scalar, temporal, thematic, and spectral assessments or models. This design and documentation procedures for creating the Baltimore-Washington Regional "Collaboratory" are presented in relation to its use for environmental modeling applications.

Maryland

A synthetic review of notoedres species mites and mange

Notoedric mange, caused by obligately parasitic sarcoptiform Notoedres mites, is associated with potentially fatal dermatitis with secondary systemic disease in small mammals, felids and procyonids among others, as well as an occasional zoonosis. We describe clinical spectra in non-chiropteran hosts, review risk factors and summarize ecological and epidemiological studies. The genus is disproportionately represented on rodents. Disease in felids and procyonids ranges from very mild to death. Knowledge of the geographical distribution of the mites is highly inadequate, with focal hot spots known for Notoedres cati in domestic cats and bobcats. Predisposing genetic and immunological factors are not known, except that co-infection with other parasites and anticoagulant rodenticide toxicoses may contribute to severe disease. Treatment of individual animals is typically successful with macrocytic lactones such as selamectin, but herd or wildlife population treatment has not been undertaken. Transmission requires close contact and typically is within a host species. Notoedric mange can kill half all individuals in a population and regulate host population below non-diseased density for decades, consistent with frequency-dependent transmission or spillover from other hosts. Epidemics are increasingly identified in various hosts, suggesting global change in suitable environmental conditions or increased reporting bias.

Parasitology

Context-dependent interactions and the regulation of species richness in freshwater fish

Species richness is regulated by a complex network of scale-dependent processes. This complexity can obscure the influence of limiting species interactions, making it difficult to determine if abiotic or biotic drivers are more predominant regulators of richness. Using integrative modeling of freshwater fish richness from 721 lakes along an 11 o latitudinal gradient, we find negative interactions to be a relatively minor independent predictor of species richness in lakes despite the widespread presence of predators. Instead, interaction effects, when detectable among major functional groups and 231 species pairs, were strong, often positive, but contextually dependent on environment. These results are consistent with the idea that negative interactions internally structure lake communities but do not consistently ‘scale-up’ to regulate richness independently of the environment. The importance of environment for interaction outcomes and its role in the regulation of species richness highlights the potential sensitivity of fish communities to the environmental changes affecting lakes globally.

Nature Communications

Increased pathogen exposure of a marine apex predator over three decades

Environmental changes associated with global warming create new opportunities for pathogen and parasite transmission in Arctic wildlife. As an apex predator ranging over large, remote areas, changes in pathogens and parasites in polar bears are a useful indicator of changing transmission dynamics in Arctic ecosystems. We examined prevalence and risk factors associated with exposure to parasites and viral and bacterial pathogens in Chukchi Sea polar bears. Serum antibodies to six pathogens were detected and prevalence increased between 1987–1994 and 2008–2017 for five: Toxoplasma gondii , Neospora caninum , Francisella tularensis , Brucella abortus/suis , and canine distemper virus. Although bears have increased summer land use, this behavior was not associated with increased exposure. Higher prevalence of F. tularensis , C. burnetii , and B. abortus/suis antibodies in females compared to males, however, could be associated with terrestrial denning. Exposure was related to diet for several pathogens indicating increased exposure in the food web. Elevated white blood cell counts suggest a possible immune response to some pathogens. Given that polar bears face multiple stressors in association with climate change and are a subsistence food, further work is warranted to screen for signs of disease.

Alaska

The Landsat program: Its origins, evolution, and impacts

Landsat 1 began an era of space-based resource data collection that changed the way science, industry, governments, and the general public view the Earth. For the last 25 years, the Landsat program - despite being hampered by institutional problems and budget uncertainties - has successfully provided a continuous supply of synoptic, repetitive, multi-spectral data of the Earth's land areas. These data have profoundly affected programs for mapping resources, monitoring environmental changes, and assessing global habitability. The societal applications this program generated are so compelling that international systems have proliferated to carry on the tasks initiated with Landsat data.

Photogrammetric Engineering and Remote Sensing

Using paleo-archives to safeguard biodiversity under climate change

Strategies for 21st-century environmental management and conservation under global change require a strong understanding of the biological mechanisms that mediate responses to climate- and human-driven change to successfully mitigate range contractions, extinctions, and the degradation of ecosystem services. Biodiversity responses to past rapid warming events can be followed in situ and over extended periods, using cross-disciplinary approaches that provide cost-effective and scalable information for species’ conservation and the maintenance of resilient ecosystems in many bioregions. Beyond the intrinsic knowledge gain such integrative research will increasingly provide the context, tools, and relevant case studies to assist in mitigating climate-driven biodiversity losses in the 21st century and beyond.

Science

The Zooplankton International Geospatial (ZIG) dataset: A global repository of spatiotemporal freshwater zooplankton community composition data from lakes and reservoirs to support ecological research

Zooplankton transfer substantial energy in aquatic food webs and are used as indicators of environmental change. Syntheses of zooplankton community dynamics globally require datasets that span a wide range of environmental gradients; however, these datasets are limited due to methodological differences across programs, taxonomic inconsistencies, and a lack of standardized metadata. To reconcile these challenges, we created the Zooplankton International Geospatial (ZIG) dataset, which includes original zooplankton, water physical and chemical variables, and lake morphometric data from 311 inland lakes and reservoirs. ZIG includes waterbodies ranging in size from 0.005 to 82,100 km 2 and spanning broad latitudinal (−47.26 to 64.90) and longitudinal ranges (−165.04 to 176.53). Temporal coverage for individual waterbodies ranges between 1 and 60 yr with sampling frequency ranging from annually to weekly. With its extensive coverage and content, we consider ZIG to be a cornerstone for future investigations of global scale lake biodiversity change.

Limnology & Oceanography - Letters

Next generation of global land cover characterization, mapping, and monitoring

Land cover change is increasingly affecting the biophysics, biogeochemistry, and biogeography of the Earth's surface and the atmosphere, with far-reaching consequences to human well-being. However, our scientific understanding of the distribution and dynamics of land cover and land cover change (LCLCC) is limited. Previous global land cover assessments performed using coarse spatial resolution (300 m–1 km) satellite data did not provide enough thematic detail or change information for global change studies and for resource management. High resolution (∼30 m) land cover characterization and monitoring is needed that permits detection of land change at the scale of most human activity and offers the increased flexibility of environmental model parameterization needed for global change studies. However, there are a number of challenges to overcome before producing such data sets including unavailability of consistent global coverage of satellite data, sheer volume of data, unavailability of timely and accurate training and validation data, difficulties in preparing image mosaics, and high performance computing requirements. Integration of remote sensing and information technology is needed for process automation and high-performance computing needs. Recent developments in these areas have created an opportunity for operational high resolution land cover mapping, and monitoring of the world. Here, we report and discuss these advancements and opportunities in producing the next generations of global land cover characterization, mapping, and monitoring at 30-m spatial resolution primarily in the context of United States, Group on Earth Observations Global 30 m land cover initiative (UGLC).

International Journal of Applied Earth Observation

The Anthropocene as an event, not an epoch

Over the course of the last decade the concept of the Anthropocene has become widely established within and beyond the geoscientific literature but its boundaries remain undefined. Formal definition of the Anthropocene as a chronostratigraphical series and geochronological epoch following the Holocene, at a fixed horizon and with a precise global start date, has been proposed, but fails to account for the diachronic nature of human impacts on global environmental systems during the late Quaternary. By contrast, defining the Anthropocene as an ongoing geological event more closely reflects the reality of both historical and ongoing human–environment interactions, encapsulating spatial and temporal heterogeneity, as well as diverse social and environmental processes that characterize anthropogenic global changes. Thus, an Anthropocene Event incorporates a substantially wider range of anthropogenic environmental and cultural effects, while at the same time applying more readily in different academic contexts than would be the case with a rigidly defined Anthropocene Series/Epoch.

Journal of Quaternary Science

Global groundwater solute composition and concentrations

Informed analysis of policies related to food security, global climate change, wetland ecology, environmental nutrient flux, element cycling, groundwater weathering, continental denudation, human health, etc. depends to a large extent on quantitative estimates of solute mass fluxes into and out of all global element pools including the enigmatic global aquifer systems. Herein for the first time, we proffer the mean global solute concentration of all major and selected minor and trace solutes in the active groundwater that represents 99% of liquid fresh water on Earth. Concentrations in this significant element pool have yielded to a geospatial machine learning kNN-nearest neighbors’ algorithm with numerous geospatial predictors utilizing a large new lithology/climate/aquifer age/elevation based solute database. The predicted concentrations are consistent with traditional solute ratios, concentrations, and thermodynamic saturation indices.

Groundwater

Uncertainty quantification for environmental models

Environmental models are used to evaluate the fate of fertilizers in agricultural settings (including soil denitrification), the degradation of hydrocarbons at spill sites, and water supply for people and ecosystems in small to large basins and cities—to mention but a few applications of these models. They also play a role in understanding and diagnosing potential environmental impacts of global climate change. The models are typically mildly to extremely nonlinear. The persistent demand for enhanced dynamics and resolution to improve model realism [17] means that lengthy individual model execution times will remain common, notwithstanding continued enhancements in computer power. In addition, high-dimensional parameter spaces are often defined, which increases the number of model runs required to quantify uncertainty [2]. Some environmental modeling projects have access to extensive funding and computational resources; many do not. The many recent studies of uncertainty quantification in environmental model predictions have focused on uncertainties related to data error and sparsity of data, expert judgment expressed mathematically through prior information, poorly known parameter values, and model structure (see, for example, [1,7,9,10,13,18]). Approaches for quantifying uncertainty include frequentist (potentially with prior information [7,9]), Bayesian [13,18,19], and likelihood-based. A few of the numerous methods, including some sensitivity and inverse methods with consequences for understanding and quantifying uncertainty, are as follows: Bayesian hierarchical modeling and Bayesian model averaging; single-objective optimization with error-based weighting [7] and multi-objective optimization [3]; methods based on local derivatives [2,7,10]; screening methods like OAT (one at a time) and the method of Morris [14]; FAST (Fourier amplitude sensitivity testing) [14]; the Sobol' method [14]; randomized maximum likelihood [10]; Markov chain Monte Carlo (MCMC) [10]. There are also bootstrapping and cross-validation approaches.Sometimes analyses are conducted using surrogate models [12]. The availability of so many options can be confusing. Categorizing methods based on fundamental questions assists in communicating the essential results of uncertainty analyses to stakeholders. Such questions can focus on model adequacy (e.g., How well does the model reproduce observed system characteristics and dynamics?) and sensitivity analysis (e.g., What parameters can be estimated with available data? What observations are important to parameters and predictions? What parameters are important to predictions?), as well as on the uncertainty quantification (e.g., How accurate and precise are the predictions?). The methods can also be classified by the number of model runs required: few (10s to 1000s) or many (10,000s to 1,000,000s). Of the methods listed above, the most computationally frugal are generally those based on local derivatives; MCMC methods tend to be among the most computationally demanding. Surrogate models (emulators)do not necessarily produce computational frugality because many runs of the full model are generally needed to create a meaningful surrogate model. With this categorization, we can, in general, address all the fundamental questions mentioned above using either computationally frugal or demanding methods. Model development and analysis can thus be conducted consistently using either computation-ally frugal or demanding methods; alternatively, different fundamental questions can be addressed using methods that require different levels of effort. Based on this perspective, we pose the question: Can computationally frugal methods be useful companions to computationally demanding meth-ods? The reliability of computationally frugal methods generally depends on the model being reasonably linear, which usually means smooth nonlin-earities and the assumption of Gaussian errors; both tend to be more valid with more linear

SIAM News

A multidisciplinary framework to derive global river reach classifications at high spatial resolution

Projected climate and environmental change are expected to increase the pressure on global freshwater resources. To prepare for and cope with the related risks, stakeholders need to devise plans for sustainable management of river systems, which in turn requires the identification of management-appropriate operational units, such as groups of rivers that share similar environmental and biological characteristics. Ideally, these units are of a manageable size, and are biotically or abiotically distinguishable across a variety of river types. Here, we aim to address this need by presenting a new global river classification framework (GloRiC) to establish a common vocabulary and standardized approach to the development of globally comprehensive and integrated river classifications that can be tailored to different goals and requirements. We define the GloRiC conceptual framework based on five categories of variables: (1) hydrology; (2) physiography and climate; (3) fluvial geomorphology; (4) water chemistry; and (5) aquatic biology. We then apply the framework using hydro-environmental attributes provided by a seamless high-resolution river reach database to create initial instances of three sub-classifications (hydrologic, physio-climatic, and geomorphic) which we ultimately combine into 127 river reach types at the global scale. These supervised classifications utilize a mix of statistical analyses and expert interpretation to identify the classifier variables, the number of classes, and their thresholds. In addition, we also present an unsupervised, multivariable k-means statistical clustering of all river reaches into 30 groups. These first-of-their-kind global river reach classifications at high spatial resolution provide baseline information for a total of 35.9 million kilometers of rivers that have been assessed in this study, and are expected to be particularly useful in remote or data-poor river basins. The GloRiC framework and associated data are primarily designed for broad and rapid applicability in assessments that require stratified analyses of river ecosystem conditions at global and regional scales; smaller-scale applications could follow the same conceptual framework yet use more detailed data sources.

Environmental Research Letters

Global land cover mapping using Earth observation satellite data: Recent progresses and challenges

Land cover is an important variable for many studies involving the Earth surface, such as climate, food security, hydrology, soil erosion, atmospheric quality, conservation biology, and plant functioning. Land cover not only changes with human caused land use changes, but also changes with nature. Therefore, the state of land cover is highly dynamic. In winter snow shields underneath various other land cover types in higher latitudes. Floods may persist for a long period in a year over low land areas in the tropical and subtropical regions. Forest maybe burnt or clear cut in a few days and changes to bare land. Within several months, the coverage of crops may vary from bare land to nearly 100% crops and then back to bare land following harvest. The highly dynamic nature of land cover creates a challenge in mapping and monitoring which remains to be adequately addressed. As economic globalization continues to intensify, there is an increasing trend of land cover/land use change, environmental pollution, land degradation, biodiversity loss at the global scale, timely and reliable information on global land cover and its changes is urgently needed to mitigate the negative impact of global environment change.

ISPRS Journal of Photogrammetry and Remote Sensing

Life history strategies of stream fishes linked to predictors of hydrologic stability

Life history theory provides a framework to understand environmental change based on species strategies for survival and reproduction under stable, cyclical, or stochastic environmental conditions. We evaluated environmental predictors of fish life history strategies in 20 streams intersecting a national park within the Potomac River basin in eastern North America. We sampled stream sites during 2018–2019 and collected 3801 individuals representing 51 species within 10 taxonomic families. We quantified life history strategies for species from their coordinates in an ordination space defined by trade-offs in spawning season duration, fecundity, and parental care characteristic of opportunistic, periodic, and equilibrium strategies. Our analysis revealed important environmental predictors: Abundance of opportunistic strategists increased with low-permeability soils that produce flashy runoff dynamics and decreased with karst terrain (carbonate bedrock) where groundwater inputs stabilize stream flow and temperature. Conversely, abundance of equilibrium strategists increased in karst terrain indicating a response to more stable environmental conditions. Our study indicated that fish community responses to groundwater and runoff processes may be explained by species traits for survival and reproduction. Our findings also suggest the utility of life history theory for understanding ecological responses to destabilized environmental conditions under global climate change.

Maryland, Virginia, West Virginia

The global environmental agenda urgently needs a semantic web of knowledge

Progress in key social-ecological challenges of the global environmental agenda (e.g., climate change, biodiversity conservation, Sustainable Development Goals) is hampered by a lack of integration and synthesis of existing scientific evidence. Facing a fast-increasing volume of data, information remains compartmentalized to pre-defined scales and fields, rarely building its way up to collective knowledge. Today's distributed corpus of human intelligence, including the scientific publication system, cannot be exploited with the efficiency needed to meet current evidence synthesis challenges; computer-based intelligence could assist this task. Artificial Intelligence (AI)-based approaches underlain by semantics and machine reasoning offer a constructive way forward, but depend on greater understanding of these technologies by the science and policy communities and coordination of their use. By labelling web-based scientific information to become readable by both humans and computers, machines can search, organize, reuse, combine and synthesize information quickly and in novel ways. Modern open science infrastructure—i.e., public data and model repositories—is a useful starting point, but without shared semantics and common standards for machine actionable data and models, our collective ability to build, grow, and share a collective knowledge base will remain limited. The application of semantic and machine reasoning technologies by a broad community of scientists and decision makers will favour open synthesis to contribute and reuse knowledge and apply it toward decision making.

Environmental Evidence

Landsat yesterday and today: An American vision and an old challenge

Since the late 1960s, the United States government has invested more than $1 billion in designing, launching, and operating the Landsat (land satellite) series of Earth-observing satellites. Global change researchers, geologists, and environmental scientists have used images gathered by the satellites for purposes ranging from human health research, energy exploration, and pollution detection to agricultural assessments, urban growth monitoring, and earthquake lineament studies. The earliest data were captured on a digital medium called wide-band video tape (WBVT). However, two decades of unsound media storage conditions and a poorly maintained processing system have left the physically deteriorating WBVTs with no mechanism for interpretation. A national treasure was in jeopardy. With seed money from the National Aeronautics and Space Administration (NASA), the U.S. Geological Survey (USGS) began a project to rescue the data. More than 21,000 tapes from the 1970s have been transcribed to stable, archival media, preserving the data for future studies in Earth System Science.

Journal of Map & Geography Libraries

Changing migratory patterns in the Jackson elk herd

Migratory behavior in ungulates has declined globally and understanding the causative factors (environmental change vs. human mediated) is needed to formulate effective management strategies. In the Jackson elk herd of northwest Wyoming, demographic differences between summer elk ( Cervus elaphus ) population segments have led to changes in migratory patterns over a 35-year time period. The proportion of short-distance migrants (SDM) has increased and the proportion of long-distance migrants (LDM) has concurrently declined. The probability of winter-captured elk on the National Elk Refuge being LDM decreased from 0.99 (95% CI = 0.97–1.00) to 0.59 (95% CI = 0.47–0.70) from 1978 to 2012. We tested 4 hypotheses that could contribute toward the decline in the LDM segment: behavioral switching from LDM to SDM, differential survival, harvest availability, and calf recruitment. Switching rates from LDM to SDM were very low (0.2% each elk-year). Survival rates were similar between LDM and SDM, although harvest availability was relatively low for SDM that tended to use areas close to human development during the hunting season. Average summer calf/cow ratios of LDM declined from 42 to 23 calves per 100 cows from 1978–1984 to 2006–2012. Further, during 2006–2012, LDM summer calf/cow ratios were less than half of SDM (23 vs. 47 calves per 100 cows). Our data suggest recruitment is the driving factor behind the declining proportion of LDM in this region. Effectiveness of altering harvest management strategies to conserve the LDM portion of the Jackson elk herd may be limited.

Wyoming

Environmental change makes robust ecological networks fragile

Complex ecological networks appear robust to primary extinctions, possibly due to consumers’ tendency to specialize on dependable (available and persistent) resources. However, modifications to the conditions under which the network has evolved might alter resource dependability. Here, we ask whether adaptation to historical conditions can increase community robustness, and whether such robustness can protect communities from collapse when conditions change. Using artificial life simulations, we first evolved digital consumer-resource networks that we subsequently subjected to rapid environmental change. We then investigated how empirical host–parasite networks would respond to historical, random and expected extinction sequences. In both the cases, networks were far more robust to historical conditions than new ones, suggesting that new environmental challenges, as expected under global change, might collapse otherwise robust natural ecosystems.

Nature Communications