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Results for “Environmental Modelling and Software”

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At least 109 records · Page 6Linked to original sources
USGS2022

A machine learning approach to predicting equilibrium ripple wavelength

Sand ripples are geomorphic features on the seafloor that affect bottom boundary layer dynamics including wave attenuation and sediment transport. We present a new equilibrium ripple predictor using a machine learning approach that outputs a probability distribution of wave-generated equilibrium wavelengths and statistics including an estimate of ripple height, the most probable ripple wavelength, and sediment and flow parameterizations. The Bayesian Optimal Model System (BOMS) is an ensemble machine learning system that combines two machine learning algorithms and two deterministic empirical ripple predictors with a Bayesian meta-learner to produce probabilistic wave-generated equilibrium ripple wavelength estimates in sandy locations. A ten-fold cross validation of BOMS resulted in an adjusted R-squared value of 0.93 and an average root mean square error (RMSE) of 8.0 cm. During both cross validation and testing on three unique field datasets, BOMS provided more accurate wavelength predictions than each individual base model and other common ripple predictors.

Environmental Modeling and Software↗
USGS2023

Generating a reference flow network with improved connectivity to support durable data integration and reproducibility in the coterminous US

This report presents a reference flow network for the conterminous United States that is built from the best available information from the U.S. Geological Survey, the National Oceanic and Atmospheric Administration National Weather Service, and the U.S. Environmental Protection Agency. The work is intended to support durable data integration and reproducibility. Originating from the National Hydrography Dataset Plus (NHDPlus) V2.1, the reference flow network incorporates network connectivity enhancements from federal agency efforts. After incorporating these network improvements, many original NHDPlus attributes were regenerated to enable network navigation and related operations. After introducing the motivation and background for this work, this report describes the attribute generation workflow and data quality checks that were performed in preparation of the dataset. The reference flow network follows the NHDPlus data model and is described using terms defined in the Mainstem and Drainage Basin logical model and WaterML2 Part3: Surface Hydrology Features conceptual model.

Environmental Modelling and Software↗
USGS2023

Leveraging machine learning to automate regression model evaluations for large multi-site water-quality trend studies

Large multi-site trend studies provide an opportunity to evaluate progress of waterbodies towards water-quality goals across broad geographic areas. Such studies often aggregate the results of site-specific models and thus contend with evaluating each model for appropriate fit and statistical assumptions. We explored the use of four traditional machine learning models (logistic regression, linear and quadratic discriminant analysis, and k-nearest neighbors) to perform these checks and estimate probabilities that an analyst would publish or reject a site-specific trend model from a multi-site study. We trained these “model-checking models” (MCMs) using a national study of over 6000 trend models and tested the MCMs using a smaller set of novel trend models. Although the MCMs did not perform well enough to bypass analyst review entirely, we found incorporating an MCM into a larger evaluation workflow can reduce the number of trend models needing an analyst review by more than half.

Environmental Modeling and Software↗
USGS2024

Design and calibration of a nitrate decision support tool for groundwater wells in Wisconsin, USA

This paper describes development of a nitrate decision support tool for groundwater wells (GW-NDST) that combines nitrate leaching and groundwater lag-times to compute well concentrations. The GW-NDST uses output from support models that simulate leached nitrate, groundwater age distributions, and nitrate reduction rates. The support models are linked through convolution to simulate nitrate transport to wells. Spatially distributed parameters were adjusted through calibration to 34,255 nitrate sample targets. Prediction uncertainty is illustrated via Monte Carlo realizations informed during calibration. Over 78% of target concentrations were within the simulated range of results from 450 realizations. An example forecasting scenario illustrates that a range of feasible outcomes exist and should be considered when interpreting forecasts for decision making. Uncertainty in forecasting is unavoidable; the intent of characterizing uncertainty in the GW-NDST is to facilitate decision making by increasing insight into the response of nitrate contamination to physical and chemical processes.

Wisconsin↗
USGS2024

Transfer learning with convolutional neural networks for hydrological streamline delineation

Hydrological streamline delineation is critical for effective environmental management, influencing agriculture sustainability, river dynamics, watershed planning, and more. This study develops a novel approach to combining transfer learning with convolutional neural networks that capitalize on image-based pre-trained models to improve the accuracy and transferability of streamline delineation. We evaluate the performance of eleven image-based pre-trained models and a baseline model using datasets from Rowan County, North Carolina, and Covington River, Virginia in the USA. Our results demonstrate that when models are adapted to a new area, the fine-tuned ImageNet pre-trained model exhibits superior predictive accuracy, markedly higher than the models trained from scratch or those only fine-tuned on the same area. Moreover, the pre-trained model achieves better smoothness and connectivity between classified streamline channels. These findings underline the effectiveness of transfer learning in enhancing the delineation of hydrological streamlines across varied geographies, offering a scalable solution for accurate and efficient environmental modelling.

North Carolina, Virginia↗
USGS2025

Automating physics-based models to estimate thermoelectric-power water use

Thermoelectric (TE) power plants withdraw more water than any other sector of water use in the United States and consume water at rates that can be significant especially in water-stressed regions. Historical TE water-use data have been inconsistent, incomplete, or discrepant, resulting in an increased research focus on improving the accuracy and availability of TE water-use data using modeling approaches. This paper describes and benchmarks new code that was developed to automate and update a physics-based TE water use model that was previously published. Utilizing the automated physics-based model, monthly TE-power water withdrawal and consumption were calculated for a total of 1341 TE power plants for the 2008–2020 historical reanalysis. The updated and automated physics-based thermoelectric-power water-use model provides spatially and temporally relevant TE water-use estimates that are consistent, reproducible, transparent, and can be generated efficiently for water-using, utility-scale TE-power plants across conterminous United States (CONUS).

Environmental Modelling and Software↗
USGS2026

A catalogue of Do's and Don'ts in the modeling of environmental systems

Modeling plays a vital role in understanding and managing complex environmental systems, but its credibility and quality depend heavily on a comprehensive set of defensible model activities and practices, especially when the system of interest is plagued with uncertainties and conflicting stakeholder perspectives. This paper proposes a catalogue of Do's and Don'ts to guide modelers in addressing the many pertinent considerations through the whole modeling cycle. This practical tool provides advice on approaching modeling effectively through adhering to good modeling practice. It emphasizes model choices that align with the model purpose and context, and the justification and documentation of modeling decisions and assumptions. Managing uncertainty is a core consideration. The identification, assessment and reporting of these uncertainties is important across the entire modeling process, which spans problem framing, technical design, implementation and application phases. Such good practices are critical for transparency and reliability of the modeling.

Environmental Modelling and Software↗
USGS2000

Simulation of nitrous oxide and nitric oxide emissions from tropical primary forests in the Costa Rican Atlantic Zone

Nitrous oxide (N 2 O) and nitric oxide (NO) are important atmospheric trace gases participating in the regulation of global climate and environment. Predictive models on the emissions of N 2 O and NO emissions from soil into the atmosphere are required. We modified the CENTURY model (Soil Sci. Soc. Am. J., 51 (1987) 1173) to simulate the emissions of N 2 O and NO from tropical primary forests in the Atlantic Zone of Costa Rica at a monthly time step. Combined fluxes of N 2 O and NO were simulated as a function of gross N mineralization and water-filled pore space (WFPS). The coefficients for partitioning N 2 O from NO were derived from field measurements (Global Biogeochem. Cycles, 8 (1994) 399). The modified CENTURY was calibrated against observations of carbon stocks in various pools of forest ecosystems of the region, and measured WFPS and emission rates of N 2 O and NO from soil to the atmosphere. WFPS is an important factor regulating nutrient cycling and emissions of N2O and NO from soils making the accuracy of the WFPS prediction central to the modeling process. To do this, we modified the hydrologic submodel and developed a new method for the prediction of WFPS at the monthly scale from daily rainfall information. The new method is based on: (1) the relationship between monthly rainfall and the number of rainfall events, and (2) the relative cumulative frequency distribution of ranked daily rainfall events. The method is generic and should be applicable to other areas. Simulated monthly average WFPS was 0.68±0.02 — identical with the field measurement average of 0.68±0.02 from the annual cycle observed by Keller and Reiners (Global Biogeochem. Cycles, 8 (1994) 399). Simulated fluxes of N 2 O and NO were 52.0±9.4 mg-N m −2 month −1 and 6.5±0.7 mg-N m −2 month −1 , respectively, compared with measured averages of 48.2±11.0 mg-N m −2 month −1 and 7.1±1.1 mg-N m −2 month −1 . The simulated N 2 O/NO ratio was 11.2±1.9 compared with the measured value of 10.9±4.7. WFPS is the dominant determinant of the fraction of gross N mineralization that is emitted from the soil as N 2 O and NO. If WFPS were not limiting during part of the year, this fraction would be 4.2%. With some periods of lower WFPS, the realized fraction is 2.2%. Because of the strong relationships between N 2 O and NO emission rates and rainfall and its derivative, WFPS, these moisture variables can be used to scale up nitrogen trace gas fluxes from sites to larger spatial scales.

Environmental Modelling and Software↗
USGS2013

Developing and implementing the use of predictive models for estimating water quality at Great Lakes beaches

Predictive models have been used at beaches to improve the timeliness and accuracy of recreational water-quality assessments over the most common current approach to water-quality monitoring, which relies on culturing fecal-indicator bacteria such as Escherichia coli (E. coli.) . Beach-specific predictive models use environmental and water-quality variables that are easily and quickly measured as surrogates to estimate concentrations of fecal-indicator bacteria or to provide the probability that a State recreational water-quality standard will be exceeded. When predictive models are used for beach closure or advisory decisions, they are referred to as “nowcasts.” During the recreational seasons of 2010-12, the U.S. Geological Survey (USGS), in cooperation with 23 local and State agencies, worked to improve existing nowcasts at 4 beaches, validate predictive models at another 38 beaches, and collect data for predictive-model development at 7 beaches throughout the Great Lakes. This report summarizes efforts to collect data and develop predictive models by multiple agencies and to compile existing information on the beaches and beach-monitoring programs into one comprehensive report. Local agencies measured E. coli concentrations and variables expected to affect E. coli concentrations such as wave height, turbidity, water temperature, and numbers of birds at the time of sampling. In addition to these field measurements, equipment was installed by the USGS or local agencies at or near several beaches to collect water-quality and metrological measurements in near real time, including nearshore buoys, weather stations, and tributary staff gages and monitors. The USGS worked with local agencies to retrieve data from existing sources either manually or by use of tools designed specifically to compile and process data for predictive-model development. Predictive models were developed by use of linear regression and (or) partial least squares techniques for 42 beaches that had at least 2 years of data (2010-11 and sometimes earlier) and for 1 beach that had 1 year of data. For most models, software designed for model development by the U.S. Environmental Protection Agency (Virtual Beach) was used. The selected model for each beach was based on a combination of explanatory variables including, most commonly, turbidity, day of the year, change in lake level over 24 hours, wave height, wind direction and speed, and antecedent rainfall for various time periods. Forty-two predictive models were validated against data collected during an independent year (2012) and compared to the current method for assessing recreational water quality-using the previous day’s E. coli concentration (persistence model). Goals for good predictive-model performance were responses that were at least 5 percent greater than the persistence model and overall correct responses greater than or equal to 80 percent, sensitivities (percentage of exceedances of the bathing-water standard that were correctly predicted by the model) greater than or equal to 50 percent, and specificities (percentage of nonexceedances correctly predicted by the model) greater than or equal to 85 percent. Out of 42 predictive models, 24 models yielded over-all correct responses that were at least 5 percent greater than the use of the persistence model. Predictive-model responses met the performance goals more often than the persistence-model responses in terms of overall correctness (28 versus 17 models, respectively), sensitivity (17 versus 4 models), and specificity (34 versus 25 models). Gaining knowledge of each beach and the factors that affect E. coli concentrations is important for developing good predictive models. Collection of additional years of data with a wide range of environmental conditions may also help to improve future model performance. The USGS will continue to work with local agencies in 2013 and beyond to develop and validate predictive models at beaches and improve existing nowcasts, restructuring monitoring activities to accommodate future uncertainties in funding and resources.

Great Lakes↗
USGS2007

Statistical analysis of water-quality data containing multiple detection limits II: S-language software for nonparametric distribution modeling and hypothesis testing

Analysis of low concentrations of trace contaminants in environmental media often results in left-censored data that are below some limit of analytical precision. Interpretation of values becomes complicated when there are multiple detection limits in the data-perhaps as a result of changing analytical precision over time. Parametric and semi-parametric methods, such as maximum likelihood estimation and robust regression on order statistics, can be employed to model distributions of multiply censored data and provide estimates of summary statistics. However, these methods are based on assumptions about the underlying distribution of data. Nonparametric methods provide an alternative that does not require such assumptions. A standard nonparametric method for estimating summary statistics of multiply-censored data is the Kaplan-Meier (K-M) method. This method has seen widespread usage in the medical sciences within a general framework termed "survival analysis" where it is employed with right-censored time-to-failure data. However, K-M methods are equally valid for the left-censored data common in the geosciences. Our S-language software provides an analytical framework based on K-M methods that is tailored to the needs of the earth and environmental sciences community. This includes routines for the generation of empirical cumulative distribution functions, prediction or exceedance probabilities, and related confidence limits computation. Additionally, our software contains K-M-based routines for nonparametric hypothesis testing among an unlimited number of grouping variables. A primary characteristic of K-M methods is that they do not perform extrapolation and interpolation. Thus, these routines cannot be used to model statistics beyond the observed data range or when linear interpolation is desired. For such applications, the aforementioned parametric and semi-parametric methods must be used.

Computers & Geosciences↗
USGS2018

Stream permanence is related to crayfish occupancy and abundance in the Ozark Highlands, USA

Crayfish use of intermittent streams is especially important to understand in the face of global climate change. We examined the influence of stream permanence and local habitat on crayfish occupancy and species densities in the Ozark Highlands, USA. We sampled in June and July 2014 and 2015. We used a quantitative kick–seine method to sample crayfish presence and abundance at 20 stream sites with 32 surveys/site in the Upper White River drainage, and we measured associated local environmental variables each year. We modeled site occupancy and detection probabilities with the software PRESENCE, and we used multiple linear regressions to identify relationships between crayfish species densities and environmental variables. Occupancy of all crayfish species was related to stream permanence. Faxonius meeki was found exclusively in intermittent streams, whereas Faxonius neglectus and Faxonius luteus had higher occupancy and detection probability in permanent than in intermittent streams, and Faxonius williamsi was associated with intermittent streams. Estimates of detection probability ranged from 0.56 to 1, which is high relative to values found by other investigators. With the exception of F. williamsi , species densities were largely related to stream permanence rather than local habitat. Species densities did not differ by year, but total crayfish densities were significantly lower in 2015 than 2014. Increased precipitation and discharge in 2015 probably led to the lower crayfish densities observed during this year. Our study demonstrates that crayfish distribution and abundance is strongly influenced by stream permanence. Some species, including those of conservation concern (i.e., F. williamsi , F. meeki ), appear dependent on intermittent streams, and conservation efforts should include consideration of intermittent streams as an important component of freshwater biodiversity.

Arkansas, Missouri↗
USGS2010

Bringing modeling to the masses: A web based system to predict potential species distributions

Predicting current and potential species distributions and abundance is critical for managing invasive species, preserving threatened and endangered species, and conserving native species and habitats. Accurate predictive models are needed at local, regional, and national scales to guide field surveys, improve monitoring, and set priorities for conservation and restoration. Modeling capabilities, however, are often limited by access to software and environmental data required for predictions. To address these needs, we built a comprehensive web-based system that: (1) maintains a large database of field data; (2) provides access to field data and a wealth of environmental data; (3) accesses values in rasters representing environmental characteristics; (4) runs statistical spatial models; and (5) creates maps that predict the potential species distribution. The system is available online at www.niiss.org, and provides web-based tools for stakeholders to create potential species distribution models and maps under current and future climate scenarios.

Future Internet↗
USGS2013

Capture-recapture methodology

Capture-recapture methods were initially developed to estimate human population abundance, but since that time have seen widespread use for fish and wildlife populations to estimate and model various parameters of population, metapopulation, and disease dynamics. Repeated sampling of marked animals provides information for estimating abundance and tracking the fate of individuals in the face of imperfect detection. Mark types have evolved from clipping or tagging to use of noninvasive methods such as photography of natural markings and DNA collection from feces. Survival estimation has been emphasized more recently as have transition probabilities between life history states and/or geographical locations, even where some states are unobservable or uncertain. Sophisticated software has been developed to handle highly parameterized models, including environmental and individual covariates, to conduct model selection, and to employ various estimation approaches such as maximum likelihood and Bayesian approaches. With these user-friendly tools, complex statistical models for studying population dynamics have been made available to ecologists. The future will include a continuing trend toward integrating data types, both for tagged and untagged individuals, to produce more precise and robust population models.

Book chapter↗
USGS2019

Bringing Bayesian models to life

Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models.

Book↗
USGS2005

Statistical analysis of water-quality data containing multiple detection limits: S-language software for regression on order statistics

Trace contaminants in water, including metals and organics, often are measured at sufficiently low concentrations to be reported only as values below the instrument detection limit. Interpretation of these "less thans" is complicated when multiple detection limits occur. Statistical methods for multiply censored, or multiple-detection limit, datasets have been developed for medical and industrial statistics, and can be employed to estimate summary statistics or model the distributions of trace-level environmental data. We describe S-language-based software tools that perform robust linear regression on order statistics (ROS). The ROS method has been evaluated as one of the most reliable procedures for developing summary statistics of multiply censored data. It is applicable to any dataset that has 0 to 80% of its values censored. These tools are a part of a software library, or add-on package, for the R environment for statistical computing. This library can be used to generate ROS models and associated summary statistics, plot modeled distributions, and predict exceedance probabilities of water-quality standards. ?? 2005 Elsevier Ltd. All rights reserved.

Computers & Geosciences↗
USGS1995

Watershed boundaries and digital elevation model of Oklahoma derived from 1:100,000-scale digital topographic maps

This document provides a general description of the procedures used to develop the data sets included on this compact disc. This compact disc contains watershed boundaries for Oklahoma, a digital elevation model, and other data sets derived from the digital elevation model. The digital elevation model was produced using the ANUDEM software package, written by Michael Hutchinson and licensed from the Centre for Resource and Environmental Studies at The Australian National University. Elevation data (hypsography) and streams (hydrography) from digital versions of the U.S. Geological Survey 1:100,000-scale topographic maps were used by the ANUDEM package to produce a hydrologically conditioned digital elevation model with a 60-meter cell size. This digital elevation model is well suited for drainage-basin delineation using automated techniques. Additional data sets include flow-direction, flow-accumulation, and shaded-relief grids, all derived from the digital elevation model, and the hydrography data set used in producing the digital elevation model. The watershed boundaries derived from the digital elevation model have been edited to be consistent with contours and streams from the U.S. Geological Survey 1:100,000-scale topographic maps. The watershed data set includes boundaries for 11-digit Hydrologic Unit Codes (watersheds) within Oklahoma, and 8-digit Hydrologic Unit Codes (cataloging units) outside Oklahoma. Cataloging-unit boundaries based on 1:250,000-scale maps outside Oklahoma for the Arkansas, Red, and White River basins are included. The other data sets cover Oklahoma, and where available, portions of 1:100,000-scale quadrangles adjoining Oklahoma.

Oklahoma↗
USGS2013

The influence of coarse-scale environmental features on current and predicted future distributions of narrow-range endemic crayfish populations

1.A major limitation to effective management of narrow-range crayfish populations is the paucity of information on the spatial distribution of crayfish species and a general understanding of the interacting environmental variables that drive current and future potential distributional patterns. 2.Maximum Entropy Species Distribution Modeling Software (MaxEnt) was used to predict the current and future potential distributions of four endemic crayfish species in the Ouachita Mountains. Current distributions were modelled using climate, geology, soils, land use, landform and flow variables thought to be important to lotic crayfish. Potential changes in the distribution were forecast by using models trained on current conditions and projecting onto the landscape predicted under climate-change scenarios. 3.The modelled distribution of the four species closely resembled the perceived distribution of each species but also predicted populations in streams and catchments where they had not previously been collected. Soils, elevation and winter precipitation and temperature most strongly related to current distributions and represented 6587% of the predictive power of the models. Model accuracy was high for all models, and model predictions of new populations were verified through additional field sampling. 4.Current models created using two spatial resolutions (1 and 4.5km2) showed that fine-resolution data more accurately represented current distributions. For three of the four species, the 1-km2 resolution models resulted in more conservative predictions. However, the modelled distributional extent of Orconectes leptogonopodus was similar regardless of data resolution. Field validations indicated 1-km2 resolution models were more accurate than 4.5-km2 resolution models. 5.Future projected (4.5-km2 resolution models) model distributions indicated three of the four endemic species would have truncated ranges with low occurrence probabilities under the low-emission scenario, whereas two of four species would be severely restricted in range under moderatehigh emissions. Discrepancies in the two emission scenarios probably relate to the exclusion of behavioural adaptations from species-distribution models. 6.These model predictions illustrate possible impacts of climate change on narrow-range endemic crayfish populations. The predictions do not account for biotic interactions, migration, local habitat conditions or species adaptation. However, we identified the constraining landscape features acting on these populations that provide a framework for addressing habitat needs at a fine scale and developing targeted and systematic monitoring programmes.

Freshwater Biology↗