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Results for “Environmental Modelling & Software”

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At least 109 records · Page 6Linked to original sources
USGS2020

Spatially explicit reconstruction of post-megafire forest recovery through landscape modeling

Megafires are large wildfires that occur under extreme weather conditions and produce mixed burn severities across diverse environmental gradients. Assessing megafire effects requires data covering large spatiotemporal extents, which are difficult to collect from field inventories. Remote sensing provides an alternative but is limited in revealing post-fire recovery trajectories and the underlying processes that drive the recovery. We developed a novel framework to spatially reconstruct the post-fire time-series of forest conditions after the 1987 Black Dragon fire of China by integrating a forest landscape model (LANDIS) with remote sensing and inventory data. We derived pre-fire (1985) forest composition and the megafire perimeter and severity using remote sensing and inventory data. We simulated the megafire and the post-megafire forest recovery from 1985 to 2015 using the LANDIS model. We demonstrated that the framework was effective in reconstructing the post-fire stand dynamics and that it is applicable to other types of disturbances.

Environmental Modelling and Software↗
USGS2021

Socio-technical scales in socio-environmental modeling: Managing a system-of-systems modeling approach

System-of-systems approaches for integrated assessments have become prevalent in recent years. Such approaches integrate a variety of models from different disciplines and modeling paradigms to represent a socio-environmental (or social-ecological) system aiming to holistically inform policy and decision-making processes. Central to the system-of-systems approaches is the representation of systems in a multi-tier framework with nested scales. Current modeling paradigms, however, have disciplinary-specific lineage, leading to inconsistencies in the conceptualization and integration of socio-environmental systems. In this paper, a multidisciplinary team of researchers, from engineering, natural and social sciences, have come together to detail socio-technical practices and challenges that arise in the consideration of scale throughout the socio-environmental modeling process. We identify key paths forward, focused on explicit consideration of scale and uncertainty, strengthening interdisciplinary communication, and improvement of the documentation process. We call for a grand vision (and commensurate funding) for holistic system-of-systems research that engages researchers, stakeholders, and policy makers in a multi-tiered process for the co-creation of knowledge and solutions to major socio-environmental problems.

Environmental Modelling and Software↗
USGS2021

Mainstems: A logical data model implementing mainstem and drainage basin feature types based on WaterML2 Part 3: HY Features concepts

The Mainstems data model implements the catchment and flowpath concepts from WaterML2 Part 3: Surface Hydrology Features (HY_Features) for persistent, cross-scale, identification of hydrologic features. The data model itself provides a focused and lightweight method to describe hydrologic networks with minimum but sufficient information. The design is intended to provide a model for data integration that can be used for network navigation and persistent hydrologic indexing (hydrographic addressing) functionality. Mainstems is designed to provide long-term stability with minimal maintenance requirements. The data model is not meant to advance hydrologic process representation or uniquely represent geomorphic characteristics. The principle assumption in Mainstems is that all drainage basins have one - and only one - headwater source area and a single mainstem that flows to a single outlet . Using these base feature types, ( headwater , outlet , mainstem , and drainage basin ) a nested set of drainage basins - and the associated dendritic network of mainstems - can be identified.

Environmental Modelling and Software↗
USGS2021

Evaluation of six methods for correcting bias in estimates from ensemble tree machine learning regression model

Ensemble-tree machine learning (ML) regression models can be prone to systematic bias: small values are overestimated and large values are underestimated. Additional bias can be introduced if the dependent variable is a transform of the original data. Six methods were evaluated for their ability to correct systematic and introduced bias. Method performance was evaluated using four case studies of groundwater quality: the units of the dependent variable were pH in two and log-concentration in the others. When performance metrics (bias and RMSE for both points and the CDF) were computed using the same units as those in the ML model, empirical distribution matching (EDM) provided the best results. When the metrics were computed using retransformed concentration, EDM and a method incorporating Duan's smearing estimate were both effective. A method based on the Z-score transform approximates EDM if the correlation coefficient between rank-ordered ML estimates and rank-ordered observations approaches one.

Environmental Modeling and Software↗
USGS2021

Augmented normalized difference water index for improved monitoring of surface water

We present a comprehensive critical review of well-established satellite remote sensing water indices and offer a novel, robust Augmented Normalized Difference Water Index (ANDWI). ANDWI employs an expanded set of spectral bands, RGB, NIR, and SWIR 1-2 , to maximize the contrast between water and non-water pixels. Further, we implement a dynamic thresholding method, the Otsu algorithm, to enhance ANDWI's performance. Applied to a variety of environmental conditions, ANDWI with Otsu-thresholding offered the highest overall accuracy (accuracy = 0.98, F1 = 0.98, and Kappa = 0.96) compared to other indices (NDWI, MNDWI, AWEI, WI). We also propose a novel cloud filtering algorithm that substantially increases the number of useable images compared to the conventional cloud-free composites (124% increased observations in the studied area) and resolves inappropriate masking of water bodies and hot sands as clouds by conventional methods. Finally, we develop a Google Earth Engine App to readily delineate 16-day surface water bodies across the globe.

Environmental Modeling and Software↗
USGS2021

Online-coupling of widely-ranged timescales to model coral reef development

The increasing pressure on Earth's ecosystems due to climate change is becoming more and more evident and the impacts of climate change are especially visible on coral reefs. Understanding how climate change interacts with the physical environment of reefs to impact coral growth and reef development is critically important to predicting the persistence of reefs into the future. In this study, a biophysical model was developed including four environmental factors in a feedback loop with the coral's biology: (1) light; (2) hydrodynamics; (3) temperature; and (4) pH. The submodels are online coupled, i.e. regularly exchanging information and feedbacks while the model runs. This ensures computational efficiency despite the widely-ranged timescales. The composed biophysical model provides a significant step forward in understanding the processes that modulate the evolution of coral reefs, as it is the first construction of a model in which the hydrodynamics are included in the feedback loop.

Environmental Modeling and Software↗
USGS2022

A machine learning approach to predicting equilibrium ripple wavelength

Sand ripples are geomorphic features on the seafloor that affect bottom boundary layer dynamics including wave attenuation and sediment transport. We present a new equilibrium ripple predictor using a machine learning approach that outputs a probability distribution of wave-generated equilibrium wavelengths and statistics including an estimate of ripple height, the most probable ripple wavelength, and sediment and flow parameterizations. The Bayesian Optimal Model System (BOMS) is an ensemble machine learning system that combines two machine learning algorithms and two deterministic empirical ripple predictors with a Bayesian meta-learner to produce probabilistic wave-generated equilibrium ripple wavelength estimates in sandy locations. A ten-fold cross validation of BOMS resulted in an adjusted R-squared value of 0.93 and an average root mean square error (RMSE) of 8.0 cm. During both cross validation and testing on three unique field datasets, BOMS provided more accurate wavelength predictions than each individual base model and other common ripple predictors.

Environmental Modeling and Software↗
USGS2023

Generating a reference flow network with improved connectivity to support durable data integration and reproducibility in the coterminous US

This report presents a reference flow network for the conterminous United States that is built from the best available information from the U.S. Geological Survey, the National Oceanic and Atmospheric Administration National Weather Service, and the U.S. Environmental Protection Agency. The work is intended to support durable data integration and reproducibility. Originating from the National Hydrography Dataset Plus (NHDPlus) V2.1, the reference flow network incorporates network connectivity enhancements from federal agency efforts. After incorporating these network improvements, many original NHDPlus attributes were regenerated to enable network navigation and related operations. After introducing the motivation and background for this work, this report describes the attribute generation workflow and data quality checks that were performed in preparation of the dataset. The reference flow network follows the NHDPlus data model and is described using terms defined in the Mainstem and Drainage Basin logical model and WaterML2 Part3: Surface Hydrology Features conceptual model.

Environmental Modelling and Software↗
USGS2023

Leveraging machine learning to automate regression model evaluations for large multi-site water-quality trend studies

Large multi-site trend studies provide an opportunity to evaluate progress of waterbodies towards water-quality goals across broad geographic areas. Such studies often aggregate the results of site-specific models and thus contend with evaluating each model for appropriate fit and statistical assumptions. We explored the use of four traditional machine learning models (logistic regression, linear and quadratic discriminant analysis, and k-nearest neighbors) to perform these checks and estimate probabilities that an analyst would publish or reject a site-specific trend model from a multi-site study. We trained these “model-checking models” (MCMs) using a national study of over 6000 trend models and tested the MCMs using a smaller set of novel trend models. Although the MCMs did not perform well enough to bypass analyst review entirely, we found incorporating an MCM into a larger evaluation workflow can reduce the number of trend models needing an analyst review by more than half.

Environmental Modeling and Software↗
USGS2024

Design and calibration of a nitrate decision support tool for groundwater wells in Wisconsin, USA

This paper describes development of a nitrate decision support tool for groundwater wells (GW-NDST) that combines nitrate leaching and groundwater lag-times to compute well concentrations. The GW-NDST uses output from support models that simulate leached nitrate, groundwater age distributions, and nitrate reduction rates. The support models are linked through convolution to simulate nitrate transport to wells. Spatially distributed parameters were adjusted through calibration to 34,255 nitrate sample targets. Prediction uncertainty is illustrated via Monte Carlo realizations informed during calibration. Over 78% of target concentrations were within the simulated range of results from 450 realizations. An example forecasting scenario illustrates that a range of feasible outcomes exist and should be considered when interpreting forecasts for decision making. Uncertainty in forecasting is unavoidable; the intent of characterizing uncertainty in the GW-NDST is to facilitate decision making by increasing insight into the response of nitrate contamination to physical and chemical processes.

Wisconsin↗
USGS2024

Transfer learning with convolutional neural networks for hydrological streamline delineation

Hydrological streamline delineation is critical for effective environmental management, influencing agriculture sustainability, river dynamics, watershed planning, and more. This study develops a novel approach to combining transfer learning with convolutional neural networks that capitalize on image-based pre-trained models to improve the accuracy and transferability of streamline delineation. We evaluate the performance of eleven image-based pre-trained models and a baseline model using datasets from Rowan County, North Carolina, and Covington River, Virginia in the USA. Our results demonstrate that when models are adapted to a new area, the fine-tuned ImageNet pre-trained model exhibits superior predictive accuracy, markedly higher than the models trained from scratch or those only fine-tuned on the same area. Moreover, the pre-trained model achieves better smoothness and connectivity between classified streamline channels. These findings underline the effectiveness of transfer learning in enhancing the delineation of hydrological streamlines across varied geographies, offering a scalable solution for accurate and efficient environmental modelling.

North Carolina, Virginia↗
USGS2025

Automating physics-based models to estimate thermoelectric-power water use

Thermoelectric (TE) power plants withdraw more water than any other sector of water use in the United States and consume water at rates that can be significant especially in water-stressed regions. Historical TE water-use data have been inconsistent, incomplete, or discrepant, resulting in an increased research focus on improving the accuracy and availability of TE water-use data using modeling approaches. This paper describes and benchmarks new code that was developed to automate and update a physics-based TE water use model that was previously published. Utilizing the automated physics-based model, monthly TE-power water withdrawal and consumption were calculated for a total of 1341 TE power plants for the 2008–2020 historical reanalysis. The updated and automated physics-based thermoelectric-power water-use model provides spatially and temporally relevant TE water-use estimates that are consistent, reproducible, transparent, and can be generated efficiently for water-using, utility-scale TE-power plants across conterminous United States (CONUS).

Environmental Modelling and Software↗
USGS2026

A catalogue of Do's and Don'ts in the modeling of environmental systems

Modeling plays a vital role in understanding and managing complex environmental systems, but its credibility and quality depend heavily on a comprehensive set of defensible model activities and practices, especially when the system of interest is plagued with uncertainties and conflicting stakeholder perspectives. This paper proposes a catalogue of Do's and Don'ts to guide modelers in addressing the many pertinent considerations through the whole modeling cycle. This practical tool provides advice on approaching modeling effectively through adhering to good modeling practice. It emphasizes model choices that align with the model purpose and context, and the justification and documentation of modeling decisions and assumptions. Managing uncertainty is a core consideration. The identification, assessment and reporting of these uncertainties is important across the entire modeling process, which spans problem framing, technical design, implementation and application phases. Such good practices are critical for transparency and reliability of the modeling.

Environmental Modelling and Software↗
USGS2000

Simulation of nitrous oxide and nitric oxide emissions from tropical primary forests in the Costa Rican Atlantic Zone

Nitrous oxide (N 2 O) and nitric oxide (NO) are important atmospheric trace gases participating in the regulation of global climate and environment. Predictive models on the emissions of N 2 O and NO emissions from soil into the atmosphere are required. We modified the CENTURY model (Soil Sci. Soc. Am. J., 51 (1987) 1173) to simulate the emissions of N 2 O and NO from tropical primary forests in the Atlantic Zone of Costa Rica at a monthly time step. Combined fluxes of N 2 O and NO were simulated as a function of gross N mineralization and water-filled pore space (WFPS). The coefficients for partitioning N 2 O from NO were derived from field measurements (Global Biogeochem. Cycles, 8 (1994) 399). The modified CENTURY was calibrated against observations of carbon stocks in various pools of forest ecosystems of the region, and measured WFPS and emission rates of N 2 O and NO from soil to the atmosphere. WFPS is an important factor regulating nutrient cycling and emissions of N2O and NO from soils making the accuracy of the WFPS prediction central to the modeling process. To do this, we modified the hydrologic submodel and developed a new method for the prediction of WFPS at the monthly scale from daily rainfall information. The new method is based on: (1) the relationship between monthly rainfall and the number of rainfall events, and (2) the relative cumulative frequency distribution of ranked daily rainfall events. The method is generic and should be applicable to other areas. Simulated monthly average WFPS was 0.68±0.02 — identical with the field measurement average of 0.68±0.02 from the annual cycle observed by Keller and Reiners (Global Biogeochem. Cycles, 8 (1994) 399). Simulated fluxes of N 2 O and NO were 52.0±9.4 mg-N m −2 month −1 and 6.5±0.7 mg-N m −2 month −1 , respectively, compared with measured averages of 48.2±11.0 mg-N m −2 month −1 and 7.1±1.1 mg-N m −2 month −1 . The simulated N 2 O/NO ratio was 11.2±1.9 compared with the measured value of 10.9±4.7. WFPS is the dominant determinant of the fraction of gross N mineralization that is emitted from the soil as N 2 O and NO. If WFPS were not limiting during part of the year, this fraction would be 4.2%. With some periods of lower WFPS, the realized fraction is 2.2%. Because of the strong relationships between N 2 O and NO emission rates and rainfall and its derivative, WFPS, these moisture variables can be used to scale up nitrogen trace gas fluxes from sites to larger spatial scales.

Environmental Modelling and Software↗
USGS2003

An enhanced cluster analysis program with bootstrap significance testing for ecological community analysis

The biosphere is filled with complex living patterns and important questions about biodiversity and community and ecosystem ecology are concerned with structure and function of multispecies systems that are responsible for those patterns. Cluster analysis identifies discrete groups within multivariate data and is an effective method of coping with these complexities, but often suffers from subjective identification of groups. The bootstrap testing method greatly improves objective significance determination for cluster analysis. The BOOTCLUS program makes cluster analysis that reliably identifies real patterns within a data set more accessible and easier to use than previously available programs. A variety of analysis options and rapid re-analysis provide a means to quickly evaluate several aspects of a data set. Interpretation is influenced by sampling design and a priori designation of samples into replicate groups, and ultimately relies on the researcher's knowledge of the organisms and their environment. However, the BOOTCLUS program provides reliable, objectively determined groupings of multivariate data.

Environmental Modelling and Software↗
USGS2013

Developing and implementing the use of predictive models for estimating water quality at Great Lakes beaches

Predictive models have been used at beaches to improve the timeliness and accuracy of recreational water-quality assessments over the most common current approach to water-quality monitoring, which relies on culturing fecal-indicator bacteria such as Escherichia coli (E. coli.) . Beach-specific predictive models use environmental and water-quality variables that are easily and quickly measured as surrogates to estimate concentrations of fecal-indicator bacteria or to provide the probability that a State recreational water-quality standard will be exceeded. When predictive models are used for beach closure or advisory decisions, they are referred to as “nowcasts.” During the recreational seasons of 2010-12, the U.S. Geological Survey (USGS), in cooperation with 23 local and State agencies, worked to improve existing nowcasts at 4 beaches, validate predictive models at another 38 beaches, and collect data for predictive-model development at 7 beaches throughout the Great Lakes. This report summarizes efforts to collect data and develop predictive models by multiple agencies and to compile existing information on the beaches and beach-monitoring programs into one comprehensive report. Local agencies measured E. coli concentrations and variables expected to affect E. coli concentrations such as wave height, turbidity, water temperature, and numbers of birds at the time of sampling. In addition to these field measurements, equipment was installed by the USGS or local agencies at or near several beaches to collect water-quality and metrological measurements in near real time, including nearshore buoys, weather stations, and tributary staff gages and monitors. The USGS worked with local agencies to retrieve data from existing sources either manually or by use of tools designed specifically to compile and process data for predictive-model development. Predictive models were developed by use of linear regression and (or) partial least squares techniques for 42 beaches that had at least 2 years of data (2010-11 and sometimes earlier) and for 1 beach that had 1 year of data. For most models, software designed for model development by the U.S. Environmental Protection Agency (Virtual Beach) was used. The selected model for each beach was based on a combination of explanatory variables including, most commonly, turbidity, day of the year, change in lake level over 24 hours, wave height, wind direction and speed, and antecedent rainfall for various time periods. Forty-two predictive models were validated against data collected during an independent year (2012) and compared to the current method for assessing recreational water quality-using the previous day’s E. coli concentration (persistence model). Goals for good predictive-model performance were responses that were at least 5 percent greater than the persistence model and overall correct responses greater than or equal to 80 percent, sensitivities (percentage of exceedances of the bathing-water standard that were correctly predicted by the model) greater than or equal to 50 percent, and specificities (percentage of nonexceedances correctly predicted by the model) greater than or equal to 85 percent. Out of 42 predictive models, 24 models yielded over-all correct responses that were at least 5 percent greater than the use of the persistence model. Predictive-model responses met the performance goals more often than the persistence-model responses in terms of overall correctness (28 versus 17 models, respectively), sensitivity (17 versus 4 models), and specificity (34 versus 25 models). Gaining knowledge of each beach and the factors that affect E. coli concentrations is important for developing good predictive models. Collection of additional years of data with a wide range of environmental conditions may also help to improve future model performance. The USGS will continue to work with local agencies in 2013 and beyond to develop and validate predictive models at beaches and improve existing nowcasts, restructuring monitoring activities to accommodate future uncertainties in funding and resources.

Great Lakes↗
USGS2007

Statistical analysis of water-quality data containing multiple detection limits II: S-language software for nonparametric distribution modeling and hypothesis testing

Analysis of low concentrations of trace contaminants in environmental media often results in left-censored data that are below some limit of analytical precision. Interpretation of values becomes complicated when there are multiple detection limits in the data-perhaps as a result of changing analytical precision over time. Parametric and semi-parametric methods, such as maximum likelihood estimation and robust regression on order statistics, can be employed to model distributions of multiply censored data and provide estimates of summary statistics. However, these methods are based on assumptions about the underlying distribution of data. Nonparametric methods provide an alternative that does not require such assumptions. A standard nonparametric method for estimating summary statistics of multiply-censored data is the Kaplan-Meier (K-M) method. This method has seen widespread usage in the medical sciences within a general framework termed "survival analysis" where it is employed with right-censored time-to-failure data. However, K-M methods are equally valid for the left-censored data common in the geosciences. Our S-language software provides an analytical framework based on K-M methods that is tailored to the needs of the earth and environmental sciences community. This includes routines for the generation of empirical cumulative distribution functions, prediction or exceedance probabilities, and related confidence limits computation. Additionally, our software contains K-M-based routines for nonparametric hypothesis testing among an unlimited number of grouping variables. A primary characteristic of K-M methods is that they do not perform extrapolation and interpolation. Thus, these routines cannot be used to model statistics beyond the observed data range or when linear interpolation is desired. For such applications, the aforementioned parametric and semi-parametric methods must be used.

Computers & Geosciences↗