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At least 109 records · Page 6Linked to original sources
USGS2023

Field and laboratory validation of new sampling gear to quantify coregonine egg deposition and larval emergence across spawning habitat gradients

The influence of habitat and environmental conditions on Great Lakes coregonine reproduction is not well described, in part, because we lack sampling gears for early life stages that are effective across habitats. We designed new egg and larval emergence traps to quantify coregonine reproductive success across variable depths and substrates and tested them in laboratory and field settings. In the laboratory, our new metal ring egg traps had greater egg retention (94–100%) and faster post-catch processing (5–7 min) relative to a commonly employed fiber mat trap (30–67% and 30–60 min). In Lake Ontario’s Chaumont Bay, egg densities for lake whitefish Coregonus clupeaformis (0–5,832 eggs m −2 ) and cisco Coregonus artedi (0–426,501 eggs m −2 ) measured with metal ring traps (n = 112) varied across habitats but were greatest between 2–5 m on rock and dreissenid mussel substrates. Emergence traps used an inverted cone, fine mesh, and a clear collection chamber to capture positively phototactic emerging larvae. In the laboratory, traps captured 69–80% of emerged larvae. In Chaumont Bay, emergence traps deployed for 21 days after ice out caught only cisco larvae. Emergence rates varied across habitats (0–118 larvae m −2 day −1 , n = 85) but were highest on dreissenid mussel reef substrate. Our samplers improved processing efficiency and facilitated large sample sizes to quantify variability in egg deposition densities and emergence rates across habitats. These methods can advance coregonine conservation by determining how anthropogenic changes to habitat and environmental conditions influence incubation success.

Journal of Great Lakes Research↗
USGS2021

The climate envelope of Alaska’s northern treelines: Implications for controlling factors and future treeline advance

Understanding the key mechanisms that control northern treelines is important to accurately predict biome shifts and terrestrial feedbacks to climate. At a global scale, it has long been observed that elevational and latitudinal treelines occur at similar mean growing season air temperature (GSAT) isotherms, inspiring the growth limitation hypothesis (GLH) that cold GSAT limits aboveground growth of treeline trees, with mean treeline GSAT ~6–7°C. Treelines with mean GSAT warmer than 6–7°C may indicate other limiting factors. Many treelines globally are not advancing despite warming, and other climate variables are rarely considered at broad scales. Our goals were to test whether current boreal treelines in northern Alaska correspond with the GLH isotherm, determine which environmental factors are most predictive of treeline presence, and identify areas beyond the current treeline where advance is most likely. We digitized ~12 400 km of treelines (>26 K points) and computed seasonal climate variables across northern Alaska. We then built a generalized additive model predicting treeline presence to identify key factors determining treeline. Two metrics of mean GSAT at Alaska's northern treelines were consistently warmer than the 6–7°C isotherm (means of 8.5°C and 9.3°C), indicating that direct physiological limitation from low GSAT is unlikely to explain the position of treelines in northern Alaska. Our final model included cumulative growing degree-days, near-surface (≤1 m) permafrost probability and growing season total precipitation, which together may represent the importance of soil temperature. Our results indicate that mean GSAT may not be the primary driver of treeline in northern Alaska or that its effect is mediated by other more proximate, and possibly non-climatic, controls. Our model predicts treeline potential in several areas beyond current treelines, pointing to possible routes of treeline advance if unconstrained by non-climatic factors.

Alaska↗
USGS2009

Sustaining visitor use in protected areas: Future opportunities in recreation ecology research based on the USA experience

Recreation ecology, the study of environmental consequences of outdoor recreation activities and their effective management, is a relatively new field of scientific study having emerged over the last 50 years. During this time, numerous studies have improved our understanding of how use-related, environmental and managerial factors affect ecological conditions and processes. Most studies have focused on vegetation and soil responses to recreation-related trampling on trails and recreation sites using indicators such as percent vegetation cover and exposed mineral soil. This applied approach has and will continue to yield important information for land managers. However, for the field to advance, more attention needs to be given to other ecosystem attributes and to the larger aspects of environmental conservation occurring at landscape scales. This article is an effort at initiating a dialog on needed advances in the field. We begin by reviewing broadly generalizable knowledge of recreation ecology, to separate what is known from research gaps. Then, based on the authors’ perspective of research in the USA and North America, several research directions are suggested as essential for continued progress in this field including theoretical development, broadening scale, integration with other disciplines, and examination of synergistic effects.

Environmental Management↗
USGS2016

Alternative approaches to vertebrate ecotoxicity tests in the 21st century: A review of developments over the last 2 decades and current status

The need for alternative approaches to the use of vertebrate animals for hazard assessment of chemicals and pollutants has become of increasing importance. It is now the first consideration when initiating a vertebrate ecotoxicity test, to ensure that unnecessary use of vertebrate organisms is minimized wherever possible. For some regulatory purposes, the use of vertebrate organisms for environmental risk assessments has been banned; in other situations, the number of organisms tested has been dramatically reduced or the severity of the procedure refined. However, there is still a long way to go to achieve a complete replacement of vertebrate organisms to generate environmental hazard data. The development of animal alternatives is based not just on ethical considerations but also on reducing the cost of performing vertebrate ecotoxicity tests and in some cases on providing better information aimed at improving environmental risk assessments. The present Focus article provides an overview of the considerable advances that have been made toward alternative approaches for ecotoxicity assessments over the last few decades.

Environmental Toxicology and Chemistry↗
USGS2007

Development of the Hydroecological Integrity Assessment Process for Determining Environmental Flows for New Jersey Streams

The natural flow regime paradigm and parallel stream ecological concepts and theories have established the benefits of maintaining or restoring the full range of natural hydrologic variation for physiochemical processes, biodiversity, and the evolutionary potential of aquatic and riparian communities. A synthesis of recent advances in hydroecological research coupled with stream classification has resulted in a new process to determine environmental flows and assess hydrologic alteration. This process has national and international applicability. It allows classification of streams into hydrologic stream classes and identification of a set of non-redundant and ecologically relevant hydrologic indices for 10 critical sub-components of flow. Three computer programs have been developed for implementing the Hydroecological Integrity Assessment Process (HIP): (1) the Hydrologic Indices Tool (HIT), which calculates 171 ecologically relevant hydrologic indices on the basis of daily-flow and peak-flow stream-gage data; (2) the New Jersey Hydrologic Assessment Tool (NJHAT), which can be used to establish a hydrologic baseline period, provide options for setting baseline environmental-flow standards, and compare past and proposed streamflow alterations; and (3) the New Jersey Stream Classification Tool (NJSCT), designed for placing unclassified streams into pre-defined stream classes. Biological and multivariate response models including principal-component, cluster, and discriminant-function analyses aided in the development of software and implementation of the HIP for New Jersey. A pilot effort is currently underway by the New Jersey Department of Environmental Protection in which the HIP is being used to evaluate the effects of past and proposed surface-water use, ground-water extraction, and land-use changes on stream ecosystems while determining the most effective way to integrate the process into ongoing regulatory programs. Ultimately, this scientifically defensible process will help to quantify the effects of anthropogenic changes and development on hydrologic variability and help planners and resource managers balance current and future water requirements with ecological needs.

Scientific Investigations Report↗
USGS2022

A framework to integrate innovations in invasion science for proactive management

Invasive alien species (IAS) are a rising threat to biodiversity, national security, and regional economies, with impacts in the hundreds of billions of U.S. dollars annually. Proactive or predictive approaches guided by scientific knowledge are essential to keeping pace with growing impacts of invasions under climate change. Although the rapid development of diverse technologies and approaches has produced tools with the potential to greatly accelerate invasion research and management, innovation has far outpaced implementation and coordination. Technological and methodological syntheses are urgently needed to close the growing implementation gap and facilitate interdisciplinary collaboration and synergy among evolving disciplines. A broad review is necessary to demonstrate the utility and relevance of work in diverse fields to generate actionable science for the ongoing invasion crisis. Here, we review such advances in relevant fields including remote sensing, epidemiology, big data analytics, environmental DNA (eDNA) sampling, genomics, and others, and present a generalized framework for distilling existing and emerging data into products for proactive IAS research and management. This integrated workflow provides a pathway for scientists and practitioners in diverse disciplines to contribute to applied invasion biology in a coordinated, synergistic, and scalable manner.

Biological Reviews↗
USGS2025

Testicular neoplasms and other abnormalities in common carp Cyprinus carpio from the Lower Colorado River, United States

Abnormalities were observed in the testes of common carp Cyprinus carpio collected from Willow Beach, Arizona, USA, a site on the lower Colorado River, downstream of Lake Mead and Hoover Dam. Testicular tissue collected from this site in 2003 exhibited numerous large, pigmented macrophage aggregates (MAs) and a novel, previously undescribed hypertrophy and proliferation of putative Sertoli cells. In testes samples collected in 2007, numerous testicular MA, testicular oocytes, and proliferations of Sertoli cells were observed. Three carp collected in 2007 also had raised nodules within the testes, and, microscopically, seminoma, spermatogenic seminoma, and mixed stromal cell–germ cell neoplasms were diagnosed. Several risk factors for these adverse effects were identified. Carp collected at this site in 2003 ranged in age from 35 to 54 years and had the oldest mean age of the thirteen sites sampled within the Colorado River basin. This site also has an unusual thermal regime when compared to other sites studied in Lake Mead and upstream sites, in that temperatures varied little over the seasons (amplitude around 1.5 °C) and barely reached 15 °C. Additionally, carp from this site had the highest total polychlorinated biphenyl (PCB) body burden. Hence, advanced age, low water temperature, and exposure to PCBs and other environmental contaminants may contribute to the observed abnormalities, highlighting the complex environmental factors initiating pre-neoplastic and neoplastic changes in wild carp.

Arizona↗
USGS2018

Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds

Lampreys have a worldwide distribution, are functionally important to ecological communities and serve significant roles in many cultures. In Pacific coast drainages of North America, lamprey populations have suffered large declines. However, lamprey population status and trends within many areas of this region are unknown and such information is needed for advancing conservation goals. We developed two quantitative PCR-based, aquatic environmental DNA (eDNA) assays for detection of Pacific Lamprey ( Entosphenus tridentatus ) and Lampetra spp, using locked nucleic acids (LNAs) in the probe design. We used these assays to characterize the spatial distribution of lamprey in 18 watersheds of Puget Sound, Washington, by collecting water samples in spring and fall. Pacific Lamprey and Lampetra spp were each detected in 14 watersheds and co-occurred in 10 watersheds. Lamprey eDNA detection rates were much higher in spring compared to fall. Specifically, the Pacific Lamprey eDNA detection rate was 3.5 times higher in spring and the Lampetra spp eDNA detection rate was 1.5 times higher in spring even though larval lamprey are present in streams year-round. This significant finding highlights the importance of seasonality on eDNA detection. Higher stream discharge in the fall likely contributed to reduced eDNA detection rates, although seasonal life history events may have also contributed. These eDNA assays differentiate Pacific Lamprey and Lampetra spp across much of their range along the west coast of North America. Sequence analysis indicates the Pacific Lamprey assay also targets other Entosphenus spp and indicates the Lampetra spp assay may have limited or no capability of detecting Lampetra in some locations south of the Columbia River Basin. Nevertheless, these assays will serve as a valuable tool for resource managers and have direct application to lamprey conservation efforts, such as mapping species distributions, occupancy modeling, and monitoring translocations and reintroductions.

Puget Sound↗
USGS2019

Time-series sediment acoustics and LISST-ABS testing

Acoustics and other surrogates can be used to accurately and cost-effectively provide time-series estimates of suspended-sediment concentration and load, which is essential for creating informed solutions to many sediment-related environmental, engineering, and agricultural concerns. Interagency efforts in recent years have advanced the testing, methods development, operational guidelines, and training on sediment acoustics. This extended abstract provides an update on horizontal profiling methodologies and introduces the testing of the LISST-ABS (Acoustic Backscatter Sensor).

Conference Paper↗
USGS2020

Sustaining Environmental Capital Initiative summary report

Federal agencies need credible scientific information to determine the production and value of ecosystem services in an efficient and timely manner. The U.S. Geological Survey addresses this scientific information need through the Sustaining Environmental Capital Initiative project. The project has relied on U.S. Geological Survey expertise related to water, fisheries, advanced modeling, and economics and other social sciences to conduct eight case studies across a range of environment types, including water-based environments, deserts, sagebrush ecosystems, floodplains, and forests. The Sustaining Environmental Capital Initiative also supported the development and expansion of four tools with the intent of adding content and usability for partners’ decision-making needs. The tools are the Natural Value Resource Center, Benefit Transfer Toolkit, Riverine Environmental Flow Decision Support System, and Artificial Intelligence for Ecosystem Services modeling platform.

Open-File Report↗
USGS2013

The environmental-data automated track annotation (Env-DATA) system: linking animal tracks with environmental data

The movement of animals is strongly influenced by external factors in their surrounding environment such as weather, habitat types, and human land use. With advances in positioning and sensor technologies, it is now possible to capture animal locations at high spatial and temporal granularities. Likewise, scientists have an increasing access to large volumes of environmental data. Environmental data are heterogeneous in source and format, and are usually obtained at different spatiotemporal scales than movement data. Indeed, there remain scientific and technical challenges in developing linkages between the growing collections of animal movement data and the large repositories of heterogeneous remote sensing observations, as well as in the developments of new statistical and computational methods for the analysis of movement in its environmental context. These challenges include retrieval, indexing, efficient storage, data integration, and analytical techniques.

Movement Ecology↗
USGS2016

Restoration of impaired ecosystems: An ounce of prevention or a pound of cure? introduction, overview, and key messages from a SETAC-SER workshop

A workshop on Restoration of Impaired Ecosystems was held in Jackson, Wyoming, in June 2014. Experts from Australia, Canada, Mexico, the United Kingdom, and the United States in ecotoxicology, restoration, and related fields from both the Society of Environmental Toxicology and Chemistry and the Society for Ecological Restoration convened to advance the practice of restoring ecosystems that have been contaminated or impaired from industrial activities. The overall goal of this workshop was to provide a forum for ecotoxicologists and restoration ecologists to define the best scientific practices to achieve ecological restoration while addressing contaminant concerns. To meet this goal, participants addressed 5 areas: 1) links between ecological risk assessment and ecological restoration, 2) restoration goals, 3) restoration design, 4) monitoring for restoration effectiveness and 5) recognizing opportunities and challenges. Definitions are provided to establish a common language across the varied disciplines. The current practice for addressing restoration of impaired ecosystems tends to be done sequentially to remediate contaminants, then to restore ecological structure and function. A better approach would anticipate or plan for restoration throughout the process. By bringing goals to the forefront, we may avoid intrusive remediation activities that close off options for the desired restoration. Participants realized that perceived limitations in the site assessment process hinder consideration of restoration goals; contaminant presence will influence restoration goal choices; social, economic, and cultural concerns can factor into goal setting; restoration options and design should be considered early during site assessment and management; restoration of both structure and function is encouraged; creative solutions can overcome limitations; a regional focus is imperative; monitoring must occur throughout the restoration process; and reciprocal transfer of knowledge is needed among theorists, practitioners, and stakeholders and among varied disciplines.

Integrated Environmental Assessment and Management↗
USGS2026

Action in uncertainty: Data-driven decisions that acknowledge emotional responses and transcendental connections

The increasing uncertainty with global change often stifles action and results in calls for more data before moving beyond status quo environmental decisions (Mahapatra & Ratha 2017; Ripple et al. 2017; Montefalcone et al. 2025). Advancing science and collecting more data is crucial; however, science alone (i.e., “western” or “positivist” science, as described in Fuller, 2001; Reid et al. 2020) may be insufficient to reduce uncertainty to a comfortable level for decision making. Therefore, increasing personal and collective capacity to make proactive decisions may require decision makers to recognize that their own understanding of the world, and therefore interpretation of scientific data, is influenced by all Four Realms of human perception: Physical, Mental, Emotional, and Transcendental (Wolf 2017; Dukes et al. 2021; Clifford et al. 2022). In the ESA Special Session, Action in Uncertainty, we introduced four questions to help participants increase cognitive awareness of how all Four Realms may affect their understanding in uncertain environmental decision contexts: 1. Physical: How do I observe uncertainty through the five senses (feel, see, hear, taste, smell)? The physical realm is what people observe, including ecological data observations and experimentation. 2. Mental: How do I think about uncertainty using logic, reason, and language-based understanding? The mental realm is how people think about the world, including scientific theory, modeling, and decision frameworks. 3. Emotional: How do I feel in uncertainty? The emotional realm is a person’s subjective emotional state, such as fear, curiosity, defensiveness, and awe. 4. Transcendental: How do I connect to something greater than myself in uncertainty? The transcendental realm includes people’s sense of purpose, responsibility for others, or moral code.

ESA Bulletin↗
USGS2018

Understanding how microbiomes influence the systems they inhabit

Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robust conceptual framework and reported without elucidating the underlying causal mechanisms. The reliance on correlative approaches limits the potential to expand the inference of a single relationship to additional systems and advance the field. We propose that research focused on how microbiomes influence the systems they inhabit should work within a common framework and target known microbial processes that contribute to the system-level processes of interest. Here we identify three distinct categories of microbiome characteristics (microbial processes, microbial community properties, and microbial membership) and propose a framework to empirically link each of these categories to each other and the broader system level processes they affect. We posit that it is particularly important to distinguish microbial community properties that can be predicted from constituent taxa (community aggregated traits) from and those properties that are currently unable to be predicted from constituent taxa (emergent properties). Existing methods in microbial ecology can be applied to more explicitly elucidate properties within each of these categories and connect these three categories of microbial characteristics with each other. We view this proposed framework, gleaned from a breadth of research on environmental microbiomes and ecosystem processes, as a promising pathway with the potential to advance discovery and understanding across a broad range of microbiome science.

Nature Microbiology↗
USGS2020

Use of underwater videography to quantify conditions utilized by endangered Moapa Dace While spawning

Advances in underwater camera technology provide an affordable means to quantify the environmental conditions under which fish spawn. This information is important for investigating spawning ecology, managing habitat, or providing information for captive breeding programs. We deployed 12 modified security cameras underwater to identify environmental conditions related to the spawning behavior of the critically endangered Moapa Dace Moapa coriacea , a Mojave Desert stream-dwelling cyprinid that had never been observed spawning and that had fallen to a low of 459 individual fish 4 years prior to this study. Camera sites were selected systematically along the stream to represent the variety of conditions available. We divided the field of view in front of each camera into a grid, and we estimated both the available environment and the habitat over which Moapa Dace showed spawning behavior. From over 4,000 10-min video clips that were randomly selected for analysis, 13 spawning events were identified. Using nonparametric contingency table analyses, we found that Moapa Dace selected depths between 30 and 34 cm, water velocities between 0.11 and 0.17 m/s, cobble substrate, and overhead instream cover. Although the recorded sample size of spawning events was small (13), our sample represents a large proportion of events given that the world's entire population of Moapa Dace at the time was approximately 650 fish distributed over multiple kilometers of stream length. Environmental conditions identified by this study were replicated in laboratory facilities to successfully propagate Moapa Dace for the first time in captivity. These propagation methods are now used in a management setting by the Nevada Department of Wildlife to maintain a captive population of this rare fish. Camera methods can be effective in helping to identify spawning conditions where water clarity is sufficient.

Nevada↗
USGS1997

Fungal life-styles and ecosystem dynamics: Biological aspects of plant pathogens, plant endophytes and saprophytes

This chapter discusses various biochemical, genetic, ecological, and evolutionary aspects of fungi that express either symbiotic or saprophytic life-styles. An enormous pool of potential pathogens exists in both agricultural and natural ecosystems, and virtually all plant species are susceptible to one or more fungal pathogens. Fungal pathogens have the potential to impact on the genetic structure of populations of individual plant species, the composition of plant communities and the process of plant succession. Endophytic fungi exist for at least part of their life cycles within the tissues of a plant host. This group of fungi is distinguished from plant pathogens because they do not elicit significant disease symptoms. However, endophytes do maintain the genetic and biochemical mechanisms required for infection and colonization of plant hosts. Fungi that obtain chemical nutrients from dead organic matter are known as saprophytes and are critical to the dynamics and resilience of ecosystems. There are two modes of saprophytic growth: one in which biomolecules that are amenable to transport across cell walls and membranes are directly absorbed, and another in which fungi must actively convert complex biopolymers into subunit forms amenable to transportation into cells. Regardless of life-style, fungi employ similar biochemical mechanisms for the acquisition and conversion of nutrients into complex biomolecules that are necessary for vegetative growth, production and dissemination of progeny, organismal competition, and survival during periods of nutrient deprivation or environmental inclemency.

Advances in Botanical Research↗
USGS2025

Host responses and viral traits interact to shape the impacts of climate warming on highly pathogenic avian influenza in migratory waterfowl

Emerging infectious diseases pose threats to wildlife populations, as exemplified by recent outbreaks of avian influenza viruses in wild birds. Climate change can affect infection dynamics in wildlife through direct effects on pathogens (e.g., environmental decay rates) and changes to host ecology, including shifting migration patterns. Here, we adapt an existing mechanistic model that couples migration and infection to study how traits of highly pathogenic avian influenza (HPAI) viruses contribute to HPAI outcomes in migratory waterfowl, then apply this model to explore potential impacts of climate change on HPAI dynamics. We find that the simulated impacts of HPAI on the host population under baseline climate conditions varied from no impact to 100% mortality, depending on viral traits. In most cases, traits related to transmission (i.e., contact rates, shedding rates) were more important for HPAI establishment probability, infection prevalence, and mortality than were other viral traits (e.g., environmental temperature sensitivity, cross-protective immunity). We then simulated the effects of climate change (i.e., altered temperature regimes) on HPAI dynamics both via viral environmental decay and via changes in bird migration phenology. In these simulations, we found that a 9-day advancement in spring migration timing increased the duration of HPAI outbreaks by increasing time birds spent at their breeding grounds, leading to higher mortality and fewer infections. In contrast, increased viral decay in warmer years had a smaller, but opposite impact. These patterns depended on the primary transmission mode of HPAI (i.e., direct vs. environmental) and its sensitivity to environmental temperatures. Together, these results suggest that climate change is likely to increase the impacts of HPAI on waterfowl populations if HPAI relies strongly on direct transmission and birds advance their spring migration. Further integrating host-viral co-evolution and other climatic changes (e.g., salinity, humidity) could provide more precise predictions of how HPAI dynamics could change in the future.

Alaska, California, Oregon↗
USGS2016

Cyanobacterial harmful algal blooms and U.S. Geological Survey science capabilities

Cyanobacterial harmful algal blooms (CyanoHABs) are increasingly a global concern because CyanoHABs pose a threat to human and aquatic ecosystem health and cause economic damages. Despite advances in scientific understanding of cyanobacteria and associated compounds, many unanswered questions remain about occurrence, environmental triggers for toxicity, and the ability to predict the timing, duration, and toxicity of CyanoHABs. U.S. Geological Survey (USGS) scientists are leading a diverse range of studies to address CyanoHAB issues in water bodies throughout the United States, using a combination of traditional methods and emerging technologies, and in collaboration with numerous partners. By providing practical applications of cutting edge CyanoHAB research, USGS studies have advanced scientific understanding, enabling the development of approaches to help protect ecological and human health.

Open-File Report↗