Endangered bird species: Report on whooping crane research and management--1974
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Bulletin of the International Council for Bird Pre↗
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Research center analyses health problems of endangered species
No abstract available.
Endangered Species Technical Bulletin↗
Wildlife mortality investigation and disease research: contributions of the USGS National Wildlife Health Center to endangered species management and recovery
The U.S. Geological Survey—National Wildlife Health Center (NWHC) provides diagnostic services, technical assistance, applied research, and training to federal, state, territorial, and local government agencies and Native American tribes on wildlife diseases and wildlife health issues throughout the United States and its territories, commonwealth, and freely associated states. Since 1975, >16,000 carcasses and specimens from vertebrate species listed under the Endangered Species Act have been submitted to NWHC for determination of causes of morbidity or mortality or assessment of health/disease status. Results from diagnostic investigations, analyses of the diagnostic database, technical assistance and consultation, field investigation of epizootics, and wildlife disease research by NWHC wildlife disease specialists have contributed importantly to the management and recovery of listed species.
EcoHealth↗
Wildlife specimen collection, preservation, and shipment
Specimens are used to provide supporting information leading to the determination of the cause of disease or death in wildlife and for disease monitoring or surveillance. Commonly used specimens for wildlife disease investigations include intact carcasses, tissues from carcasses, euthanized or moribund animals, parasites, ingested food, feces, or environmental samples. Samples from live animals or the environment (e.g., contaminated feed) in the same vicinity as a mortality event also may be helpful. The type of specimen collected is determined by availability of samples and biological objectives. Multiple fresh, intact carcasses from affected species are the most useful in establishing a cause for a mortality event. Submission of entire carcasses allows observation of gross lesions and abnormalities, as well as disease testing of multiple tissues. Samples from live animals may be more appropriate when sick animals cannot be euthanized (e.g., threatened or endangered species) or for research and monitoring projects examining disease or agents circulating in apparently healthy animals or those not exhibiting clinical signs. Samples from live animals may include collections of blood, hair, feathers, feces, or ectoparasites, or samples obtained by swabbing lesions or orifices. Photographs and videos are useful additions for recording field and clinical signs and conveying conditions at the site. Collection of environmental samples (e.g., feces, water, feed, or soil) may be appropriate when animals cannot be captured for sampling or the disease agent may persist in the environment. If lethal collection is considered necessary, biologists should refer to the policies, procedures, and permit requirements of their institution/facility and the agency responsible for species management (U.S. Fish and Wildlife Service or State natural resource agency) prior to use in the field. If threatened or endangered species are found dead, or there is evidence of illegal take, field personal should contact local wildlife law enforcement authorities immediately and prior to handling the carcass. Prior to collecting samples, it is important to determine the capabilities and submission criteria of the laboratory receiving the samples. Some laboratories may specialize in a limited number of tests, be equipped to accept only certain types of tissues (instead of entire carcasses), or specialize in particular species or group of animals (e.g., reptiles, birds, mammals). Diagnostic laboratories have specific requirements regarding preparation, labeling, and shipping of samples. Adherence to these requirements helps ensure the usefulness of any submitted specimens. Although laboratories may vary in the cost and turnaround times for diagnostic tests, some laboratories may be able to prioritize samples and accommodate accelerated time frames if communicated at the time of submission. Keeping a prepacked kit with basic carcass-collection supplies, including a paper copy of the specimen history form (available for download from the Web sites of most diagnostic laboratories), in the office or vehicle will decrease the chances of forgetting an essential item and decrease response time for arriving at an event.
Techniques and Methods↗
Status of sea otter populations in southcentral and southeast Alaska, 2002-2003
During the years 2002-2004 estimated sea otter population sizes were calculated for Southeast Alaska, Prince William Sound, and the Kenai Peninsula and Cook Inlet regions of Alaska. Aerial surveys were conducted by a single observer from a float-equipped Bellanca Scout fixed-wing aircraft flying at 91 m altitude and 65 mph. The surveys followed protocols written by Bodkin and Udevitz (1999). The survey design consisted of systematic sampling of 400 m wide transects that were uniformly placed throughout the survey area. Selection and sampling of transects was proportional to expected sea otter abundance, with most effort taking place in transects over waters 0-40 m in depth. Intensive searches were periodically conducted within transects to estimate the proportion of sea otters not detected on strips. To obtain an adjusted population size estimate, strip counts are adjusted for the area not surveyed and by a correction factor.
Alaska↗
Animal species endangerment: The role of environmental pollution
Multiple factors contribute to the decline of species. Habitat destruction is the primary factor that threatens species. affecting 73 % of endangered species. The second major factor causing species decline is the introduction of nonnative species. affecting 68% of endangered species. Pollution and overharvesting were identified as impacting, respectively, 38 and 15% of endangered species. Other factors affecting species decline include hybridization, competition, disease, and other interspecific interactions. Once a species is reduced to a remnant of its former population size and distribution, its vulnerability to catastrophic pollution events increases, frequently exceeding or replacing the factors responsible for the initial decline. Small, isolated populations are particularly vulnerable to catastrophic loss by an acute event. such as a chemical spill or pesticide application. However, when it comes to surviving a single disaster, widespread subpopulations of a species are far more resilient and ensure genetic survival. Hypothesizing theoretical concerns of potential factors that could affect an endangered species could predispose the scientific and political communities to jeopardizing threats. The user of recovery plans as a data source must be aware of the bias within the data set. These data should be used with the caveat that the source of information in recovery plans is not always based on scientific research and rigorous data collection. Over 58% of the information identifying species threats is based on estimates or personal communication. while only 42% is based on peer reviewed literature, academic research. or government reports. Many recovery plans were written when a species was initially listed in the 1970s or 1980s. Politics, human disturbance, and habitat demand issues evolve over a 20- to 30-year period. leaving much of the threats facing endangered species outdated and inadequate. These data are most valuable when used to facilitate reviews of Section 7 consultations and environmental impact statements, review permit applications, conduct environmental risk assessments, prioritize research needs. and identify limiting factors affecting species health. These data are also useful in identifying potential threats to species' health. Without properly identifying threats to endangered species based on sound. scientific research. there is little hope to successfully recover an endangered species.
Book chapter↗
Hurdles to developing quantitative decision support for Endangered Species Act resource allocation
The U.S. Fish and Wildlife Service oversees the recovery of many species protected by the U.S. Endangered Species Act (ESA). Recent research suggests that a structured approach to allocating conservation resources could increase recovery outcomes for ESA listed species. Quantitative approaches to decision support can efficiently allocate limited financial resources and maximize desired outcomes. Yet, developing quantitative decision support under real-world constraints is challenging. Approaches that pair research teams and end-users are generally the most effective. However, co-development requires overcoming “hurdles” that can arise because of differences in the mental models of the co-development team. These include perceptions that: (1) scarce funds should be spent on action, not decision support; (2) quantitative approaches are only useful for simple decisions; (3) quantitative tools are inflexible and prescriptive black boxes; (4) available data are not good enough to support decisions; and (5) prioritization means admitting defeat. Here, we describe how we addressed these misperceptions during the development of a prototype resource allocation decision support tool for understanding trade-offs in U.S. endangered species recovery. We describe how acknowledging these hurdles and identifying solutions enabled us to progress with development. We believe that our experience can assist other applications of developing quantitative decision support for resource allocation.
Frontiers in Conservation Science↗
Impacts of trapping and banding activities on productivity of Roseate Terns (Sterna Dougallii)
Although Roseate Terns (Sterna dougallii) habituate to many research activities, trapping and handling breeding adults, or repeatedly handling chicks, may affect reproductive success or chick growth. Protocols for trapping adult Roseate Terns that reduce the chances of nest desertion, neglect of chicks, and injury to adults were developed in the early 1980s, but neither short-term nor long-term effects of research activities on this endangered species have been fully investigated. Therefore, this study had the following main objectives: 1) examine long-term data (1978-1996) to determine if trapping activities have had a major effect on annual reproductive success of a Roseate Tern colony, 2) evaluate the effects of trapping adult terns on reproductive success and chick growth, and 3) evaluate the effects of handling chicks on their growth and survival. There were no significant correlations between measures of trapping disturbance and annual reproductive success in 1978-1996 for the Falkner Island (Stewart B. McKinney National Wildlife Refuge, Connecticut) colony, suggesting that trapping from late incubation through chick rearing using the field protocols described herein does not have a major effect on nesting success of Roseate Terns. In 1987-1996, adult trapping did not reduce prefledging survival of first-hatched chicks, and reduced survival of second-hatched chicks only in 1994 and 1995. Results of more detailed research in 1994-1996 suggest that Roseate Terns may be susceptible to trapping effects only when also faced with extreme conditions such as low food availability and/or high predation pressure. Trapping effects did not occur in most years under apparently average or typical conditions, and otherwise seem to be much less important than other factors affecting nesting success (e.g., predation and food availability). Analyses of chick growth data from 1987-1996 showed that while trapping significantly reduced early growth compared to untrapped controls, most of these effects disappeared after controlling for variation due to laying variables and other indices of parental age and quality. Trapping had little or no effect on later growth (indices of fledgling quality) and thus is unlikely to affect postfledging survival and fitness. For chicks whose parents were trapped, the sex of the adult(s), timing of trapping during the nesting stage, and interval between trapping events (if both parents were trapped) had little or no effect on growth. Daily or near-daily handling of chicks did not significantly affect their growth, prefledging survival, or postfledging survival. These results suggest that while trapping adult Roseate Terns can sometimes affect reproductive success and early chick growth and should be taken into account during research, trapping effects tend to be minor, short-lived, and unlikely to affect overall population health. While the full implications for population health and individual fitness are not entirely clear, there appears to be little cause for concern that trapping and banding activities are a significant problem for Roseate Terns. However, this qualitative assessment of the biological significance of trapping effects needs empirical testing. There remains a practical need to explore the ramifications of trapping effects and to consider local conditions when planning trapping activities. We also need to consider how investigator-induced effects might affect research results, and to balance potential effects of research activities against the value of the information gained.
Book↗
Not just corticosterone: Further characterization of the endocrine response of Kemp’s ridley sea turtles (Lepidochelys kempii) reveals elevated plasma aldosterone concentrations during field capture events
To develop safe and effective management policies, it is important to understand the physiologic effects of fishing interactions and scientific research methods on endangered marine species. In the present study, validated assays for plasma corticosterone, free thyroxine (fT4), and aldosterone were used to assess the endocrine status of 61 presumed healthy, wild Kemp's ridley sea turtles ( Lepidochelys kempii ) that were captured for separate ecological studies using two capture methods (trawl net n = 40; manual capture n = 21). Plasma hormone concentrations were also assessed in relation to eight clinical plasma biochemical analytes. Corticosterone and aldosterone concentrations were moderately high after capture, with significantly higher concentrations in turtles captured by trawl net vs. manual capture. Free thyroxine concentrations were within previously published ranges for healthy individuals of this species. Clinical biochemical data revealed moderately elevated potassium and lactate concentrations in many individuals, with significantly greater lactate concentrations in trawl-captured turtles. Aldosterone concentrations were positively correlated with corticosterone. The results of the present study indicate that Kemp's ridley sea turtles have robust adrenocortical activity immediately after capture, resulting in high plasma concentrations of corticosterone and aldosterone. Researchers who use such methods to access sea turtles can consider these results in planning careful and efficient field studies.
Florida, Louisiana, Mississippi↗
User engagement testing with a pilot decision support tool aimed to support species managers
Species status assessments (SSAs) are required for endangered species by the U.S. Fish and Wildlife Service and focus on the resiliency, redundancy, and representation of endangered species. SSAs must include climate information, because climate is a factor that will impact species in the future. To aid in the inclusion of climate information, a decision support system (DSS) entitled Climate Analysis and Visualization for the Assessment of Species Status (CAnVAS) was developed by the State Climate Office of North Carolina using a coproduction approach. In this study, users viewed a mock-up version of the CAnVAS interface displaying a sample layout of future projections for three key climate variables (average precipitation, average maximum temperature, and occurrence of maximum temperature) at a location of interest. This assessment of the pilot version of the CAnVAS DSS was the first step in refining CAnVAS for species-manager use. This research analyzed the differences in usability between two pilot versions of the CAnVAS DSS through eye tracking and subsequent interviews with novice users. The two pilot versions of CAnVAS differed in the way data were displayed on graphs and the color ramps used on regional maps. We found that graphically displaying temporal climate information through box-and-whisker plots and spatially through a sequential color ramp from white to purple were more effective than alternative displays at communicating climate information on endangered species. The results of this research will be used to further develop the CAnVAS DSS tool for future implementation.
Weather, Climate, and Society↗
Conservation biology for suites of species: Demographic modeling for Pacific island kingfishers
Conservation practitioners frequently extrapolate data from single-species investigations when managing critically endangered populations. However, few researchers initiate work with the intent of making findings useful to conservation efforts for other species. We presented and explored the concept of conducting conservation-oriented research for suites of geographically separated populations with similar natural histories, resource needs, and extinction threats. An example was provided in the form of an investigation into the population demography of endangered Micronesian kingfishers (Todiramphus cinnamominus). We provided the first demographic parameter estimates for any of the 12 endangered Pacific Todiramphus species, and used results to develop a population projection matrix model for management throughout the insular Pacific. Further, we used the model for elasticity and simulation analyses with demographic values that randomly varied across ranges that might characterize congener populations. Results from elasticity and simulation analyses indicated that changes in breeding adult survival exerted the greatest magnitude of influence on population dynamics. However, changes in nestling survival were more consistently correlated with population dynamics as demographic rates were randomly altered. We concluded that conservation practitioners working with endangered Pacific kingfishers should primarily focus efforts on factors affecting nestling and breeder survival, and secondarily address fledgling juveniles and helpers. Further, we described how the generalized base model might be changed to focus on individual populations and discussed the potential application of multi-species models to other conservation situations. ?? 2007 Elsevier Ltd. All rights reserved.
Biological Conservation↗
Tracking sea turtles in the Everglades
The U.S. Geological Survey (USGS) has a long history of conducting research on threatened, endangered, and at-risk species inhabiting both terrestrial and marine environments, particularly those found within national parks and protected areas. In the coastal Gulf of Mexico region, for example, USGS scientist Donna Shaver at Padre Island National Seashore in Texas has focused on “headstarting” hatchlings of the rare Kemp’s ridley sea turtle (Lepidochelys kempii). She is also analyzing trends in sea turtle strandings onshore and interactions with Gulf shrimp fisheries. Along south Florida’s Gulf coast, the USGS has focused on research and monitoring for managing the greater Everglades ecosystem. One novel project involves the endangered green sea turtle (Chelonia mydas). The ecology and movements of adult green turtles are reasonably well understood, largely due to decades of nesting beach monitoring by a network of researchers and volunteers. In contrast, relatively little is known about the habitat requirements and movements of juvenile and subadult sea turtles of any species in their aquatic environment.
Florida↗
Information on black-footed ferret biology collected within the framework of ferret conservation
Once feared to be extinct, black-footed ferrets ( Mustela nigripes ) were rediscovered near Meeteetse, Wyoming, in 1981, resulting in renewed conservation and research efforts for this highly endangered species. A need for information directly useful to recovery has motivated much monitoring of ferrets since that time, but field activities have enabled collection of data relevant to broader biological themes. This special feature is placed in a context of similar books and proceedings devoted to ferret biology and conservation. Articles include general observations on ferrets, modeling of potential impacts of ferrets on prairie dogs ( Cynomys spp.), discussions on relationships of ferrets to prairie dog habitats at several spatial scales (from individual burrows to patches of burrow systems) and a general treatise on the status of black-footed ferret recovery.
Wyoming↗
Alaska landbird montoring survey: Alaska regional protocol framework for monitoring landbirds using point counts
Alaska provides habitat for 143 species of landbirds that occur regularly in the state, about half of which breed predominantly north of the border between the contiguous United States and Canada. The road-based North American Breeding Bird Survey (BBS) provides some data on population trends in Alaska, but most northern populations are inadequately monitored by this program because of a paucity of roads. To remedy this deficiency, Boreal Partners in Flight developed the Alaska Landbird Monitoring Survey (ALMS) to monitor breeding populations of landbirds in off-road areas of Alaska in tandem with data collected from the roadside BBS. The primary objective of ALMS is to monitor long-term population trends of landbirds and other species that can be monitored by diurnal point counts during the breeding season, including many shorebirds and aquatic birds. A secondary objective is to estimate landbird densities by habitat, which can be used to model avian distribution and abundance across Alaska. ALMS is a collaborative program whereby agencies and other entities conduct standardized surveys of breeding birds and their habitats on the lands they manage and then contribute the data to the U.S. Geological Survey Alaska Science Center for storage and analysis. The short-term implementation goal of ALMS is to monitor birds systematically within each of 100 randomly selected survey blocks, thereby matching the number of BBS surveys conducted in each of Alaska's five Bird Conservation Regions (BCRs). Each block has a mini-grid of 15−25 points that are surveyed biennially, with half of the blocks surveyed in alternating years. Survey blocks are stratified by accessibility and cost-effectiveness. Refuges may opt to limit sites to those accessible by foot, vehicle, boat, or fixed-wing aircraft, as these can be surveyed more inexpensively and reliably over time. Observers survey each point within a survey block for birds using a 10-min point count once per summer on a biennial basis. They collect corresponding habitat data during the first visit and at subsequent 10-year intervals or whenever a disturbance (e.g., fire, wind) has caused a significant change. USGS analyzes ALMS data jointly with BBS data to test for differences between off-road and roadside areas and to increase power to detect statewide trends. Additional blocks can be surveyed in areas that are more difficult and expensive to access as resources become available in the future. Long-term monitoring enables detection of change in bird populations in relation to fire, disease and insect damage, resource development, climate-related change, and other landscape-level disturbances across Alaska. Results from ALMS can also help prioritize conservation and research towards species before they become endangered and require expensive recovery programs.
Alaska↗
Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria-resistant introduced birds
Of the estimated 55 Hawaiian honeycreepers (subfamily Carduelinae) only 17 species remain, nine of which the International Union for Conservation of Nature considers endangered. Among the most pressing threats to honeycreeper survival is avian malaria, caused by the introduced blood parasite Plasmodium relictum , which is increasing in distribution in Hawaiʻi as a result of climate change. Preventing further honeycreeper decline will require innovative conservation strategies that confront malaria from multiple angles. Research on mammals has revealed strong connections between gut microbiome composition and malaria susceptibility, illuminating a potential novel approach to malaria control through the manipulation of gut microbiota. One honeycreeper species, Hawaiʻi ʻamakihi ( Chlorodrepanis virens ), persists in areas of high malaria prevalence, indicating they have acquired some level of immunity. To investigate if avian host-specific microbes may be associated with malaria survival, we characterized cloacal microbiomes and malaria infection for 174 ʻamakihi and 172 malaria-resistant warbling white-eyes ( Zosterops japonicus ) from Hawaiʻi Island using 16S rRNA gene metabarcoding and quantitative polymerase chain reaction. Neither microbial alpha nor beta diversity covaried with infection, but 149 microbes showed positive associations with malaria survivors. Among these were Escherichia and Lactobacillus spp . , which appear to mitigate malaria severity in mammalian hosts, revealing promising candidates for future probiotic research for augmenting malaria immunity in sensitive endangered species.
Hawaii↗
Federal research on the conservation of migratory nongame birds in the United States
In the United States, the term 'nongame birds' applies to all bird species that are neither hunted nor legalIy endangered or threatened. Although ultimate responsibility for protection of migratory nongame birds lies with the federal government, research and management efforts by the key federal landholding agencies have historically emphasized species of economic importance, game birds and endangered species. In response to various legislative actions between the late 1960s and early 1980s, however, there has been a gradual escalation of research directed towards conservation of migratory nongame birds in these agencies. These studies have focused on two broad objectives (a) development of population sampling and census methods, and (b) identifying habitat requirements of species and species groups and the impacts of habitat changes on populations. The bulk of this research has been conducted by the U.S. Fish and Wildlife Service and the U.S. Forest Service. In this paper, the missions and research structures of these agencies are described briefly, and selected research highlights are discussed at length. Specific examples are development of the Breeding Bird Survey and teasing apart the relative contributions of forest fragmentation on breeding and wintering grounds to declines in populations of Neotropical migrants. Nongame bird research activities in other agencies are also summarized. The cumulative research conducted to date is evaluated in the context of developing a national management strategy to meet future migratory nongame bird conservation needs. Important shortcomings in present federal programmes continue to be insufficient folIow-through from research results to direct management action and lack of coordination among agencies with a vested interest in nongame bird conservation. Pending legislation and recent maturation of a comprehensive migratory nongame bird policy in the Fish and Wildlife Service are indications that significant improvements in these areas can be expected.
Book chapter↗
Examining the effect of environmental variability on the viability of endangered Steller sea lions using an integrated population model
Understanding spatio-temporal variability in demography and the influence of environmental conditions offers insight into the factors underlying population dynamics. This is particularly true for species with divergent demographic patterns across large geographic areas. The contrasting abundance trends observed across the range of Steller sea lions (Eumetopias jubatus) have been studied extensively, with research suggesting that the primary drivers of localized population dynamics vary over time and space. We developed a Bayesian integrated population model for the endangered western distinct population segment of Steller sea lions that combines mark-recapture and count data from 2000-2021 to estimate demographic rates, abundance trends, and the effects of environmental variability on population growth. Our results highlight subregional demographic differences, including reduced pup survival in the central Aleutian Islands and reduced yearling survival west of Samalga Pass. Range-wide abundance increased by 1.7% yr-1 (95% credible interval: 0.14; 3.4%) over the study period, with a positive annual growth rate of 3.0% (1.1; 5.1%) yr-1 east of Samalga Pass, a negative growth rate of -2.1% (-4.6; 0.5%) yr-1 west of Samalga Pass, and an overall low probability of local extirpation (<2%) in 100 years even in subregions experiencing continued decline. The effect of environmental variability on population growth varied depending on subpopulation size and vital rates and was strongest in the area of greatest decline. Our model improves upon existing approaches for estimating abundance, accounts for environmental variability within the viability analysis, and can facilitate evaluating the efficacy of conservation actions and progress toward recovery goals.
Alaska↗
Status and threats analysis for the Florida manatee ( Trichechus manatus latirostris ), 2012
The endangered West Indian manatee ( Trichechus manatus ), especially the Florida subspecies (T. m. latirostris), has been the focus of conservation efforts and extensive research since its listing under the Endangered Species Act. On the basis of the best information available as of December 2012, the threats facing the Florida manatee were determined to be less severe than previously thought, either because the conservation efforts have been successful, or because our knowledge of the demographic effects of those threats is increased, or both. Using the manatee Core Biological Model, we estimated the probability of the Florida manatee population on either the Atlantic or Gulf coast falling below 500 adults in the next 150 years to be 0.92 percent. The primary threats remain watercraft-related mortality and long-term loss of warm-water habitat. Since 2009, however, there have been a number of unusual events that have not yet been incorporated into this analysis, including several severely cold winters, a severe red-tide die off, and substantial loss of seagrass habitat in Brevard County, Fla. Further, the version of the Core Biological Model used in 2012 makes a number of assumptions that are under investigation. A revision of the Core Biological Model and an update of this quantitative threats analysis are underway as of 2015.
Open-File Report↗