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Closing the gap between science and management of cold-water refuges in rivers and streams

Human activities and climate change threaten coldwater organisms in freshwater ecosystems by causing rivers and streams to warm, increasing the intensity and frequency of warm temperature events, and reducing thermal heterogeneity. Cold-water refuges are discrete patches of relatively cool water that are used by coldwater organisms for thermal relief and short-term survival. Globally, cohesive management approaches are needed that consider interlinked physical, biological, and social factors of cold-water refuges. We review current understanding of cold-water refuges, identify gaps between science and management, and evaluate policies aimed at protecting thermally sensitive species. Existing policies include designating cold-water habitats, restricting fishing during warm periods, and implementing threshold temperature standards or guidelines. However, these policies are rare and uncoordinated across spatial scales and often do not consider input from Indigenous peoples. We propose that cold-water refuges be managed as distinct operational landscape units, which provide a social and ecological context that is relevant at the watershed scale. These operational landscape units provide the foundation for an integrated framework that links science and management by (1) mapping and characterizing cold-water refuges to prioritize management and conservation actions, (2) leveraging existing and new policies, (3) improving coordination across jurisdictions, and (4) implementing adaptive management practices across scales. Our findings show that while there are many opportunities for scientific advancement, the current state of the sciences is sufficient to inform policy and management. Our proposed framework provides a path forward for managing and protecting cold-water refuges using existing and new policies to protect coldwater organisms in the face of global change.

Global Change Biology

A passive integrative sampler for mercury vapor in air and neutral mercury species in water

A passive integrative mercury sampler (PIMS) based on a sealed polymeric membrane was effective for the collection and preconcentration of Hg0. Because the Hg is both oxidized and stabilized in the PIMS, sampling intervals of weeks to months are possible. The effective air sampling rate for a 15 x 2.5 cm device was about 21-equivalents/day (0.002 m3/day) and the detection limit for 4-week sampling was about 2 ng/m3 for conventional ICP-MS determination without clean-room preparation. Sampling precision was ??? 5% RSD for laboratory exposures, and 5-10% RSD for field exposures. These results suggest that the PIMS could be useful for screening assessments of Hg contamination and exposure in the environment, the laboratory, and the workplace. The PIMS approach may be particularly useful for applications requiring unattended sampling for extended periods at remote locations. Preliminary results indicate that sampling for dissolved gaseous mercury (DGM) and potentially other neutral mercury species from water is also feasible. Rigorous validation of the sampler performance is currently in progress. (C) 1999 Elsevier Science Ltd.A passive integrative mercury sampler (PIMS) based on a sealed polymeric membrane was effective for the collection and preconcentration of Hg0. Because the Hg is both oxidized and stabilized in the PIMS, sampling intervals of weeks to months are possible. The effective air sampling rate for a 15??2.5 cm device was about 21-equivalents/day (0.002 m3/day) and the detection limit for 4-week sampling was about 2 ng/m3 for conventional ICP-MS determination without clean-room preparation. Sampling precision was ???5% RSD for laboratory exposures, and 5-10% RSD for field exposures. These results suggest that the PIMS could be useful for screening assessments of Hg contamination and exposure in the environment, the laboratory, and the workplace. The PIMS approach may be particularly useful for applications requiring unattended sampling for extended periods at remote locations. Preliminary results indicate that sampling for dissolved gaseous mercury (DGM) and potentially other neutral mercury species from water is also feasible. Rigorous validation of the sampler performance is currently in progress.

Chemosphere - Global Change Science

The role of remote sensing observations and models in hydrology: The science of evapotranspiration

Over 15 years ago, Morton (1994) summarized the state of evapotranspiration (ET) research pessimistically: ‘There have been few significant advances in our knowledge of evaporation on an environmental scale over the past four decades, a state of affairs linked to the current sterility of hydrology and related environmental sciences. Furthermore, almost none of the advances have been used successfully in practice.’ He did not foresee the rapid progress in the ensuing years. These advances can be attributed largely to three convergent themes: 1) technical innovation; 2) synergy between disciplines; and 3) expressed need. The papers in this special issue address all of these three themes on remote sensing methods for ET estimation.

Hydrological Processes

Inside active volcanoes; an exhibit on the move!

All of us are aware of the emphasis currently being placed in the United States on science education and public understanding of science. Most of this emphasis is directed toward mass audiences through book publications, school curricula, and television programs; sadly, most of it deals with non-earth science topics. In an effort to take advantage of this awakened consciousness and to highlight the earth sciences, the Smithsonian Institution and the U.S Geological Survey joined forces to prepare a traveling exhibit on volcanoes that is currently touring the country. This note will serve to bring you up to date on the progress of this exhibit as it reaches the mid-point of its tour.

Earthquakes & Volcanoes (USGS)

Acoustic Doppler Current Profiler Data Processing System manual [ADCP]

This open-file report describes the data processing software currently in use by the U.S. Geological Survey (USGS), Woods Hole Coastal and Marine Science Center (WHCMSC), to process time series of acoustic Doppler current data obtained by Teledyne RD Instruments Workhorse model ADCPs. The Sediment Transport Instrumentation Group (STG) at the WHCMSC has a long-standing commitment to providing scientists high quality oceanographic data published in a timely manner. To meet this commitment, STG has created this software to aid personnel in processing and reviewing data as well as evaluating hardware for signs of instrument malfunction. The output data format for the data is network Common Data Form (netCDF), which meets USGS publication standards. Typically, ADCP data are recorded in beam coordinates. This conforms to the USGS philosophy to post-process rather than internally process data. By preserving the original data quality indicators as well as the initial data set, data can be evaluated and reprocessed for different types of analyses. Beam coordinate data are desirable for internal and surface wave experiments, for example. All the code in this software package is intended to run using the MATLAB program available from The Mathworks, Inc. As such, it is platform independent and can be adapted by the USGS and others for specialized experiments with non-standard requirements. The software is continuously being updated and revised as improvements are required. The most recent revision may be downloaded from: http://woodshole.er.usgs.gov/operations/stg/Pubs/ADCPtools/adcp_index.htm The USGS makes this software available at the user?s discretion and responsibility.

Open-File Report

Accumulating evidence in ecology: Once is not enough

Many published studies in ecological science are viewed as stand-alone investigations that purport to provide new insights into how ecological systems behave based on single analyses. But it is rare for results of single studies to provide definitive results, as evidenced in current discussions of the “reproducibility crisis” in science. The key step in science is the comparison of hypothesis-based predictions with observations, where the predictions are typically generated by hypothesis-specific models. Repeating this step allows us to gain confidence in the predictive ability of a model, and its corresponding hypothesis, and thus to accumulate evidence and eventually knowledge. This accumulation may occur via an ad hoc approach, via meta-analyses, or via a more systematic approach based on the anticipated evolution of an information state. We argue the merits of this latter approach, provide an example, and discuss implications for designing sequences of studies focused on a particular question. We conclude by discussing current data collection programs that are pre-adapted to use this approach and argue that expanded use would increase the rate of learning in ecology, as well as our confidence in what is learned.

Ecology and Evolution

Status and trends of dam removal research in the United States

Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called upon to inform decisions about whether, and how best, to bring down dams. This raises a critical question: what is the current state of dam-removal science in the United States? To explore the status, trends, and characteristics of dam-removal research in the U.S., we searched the scientific literature and extracted basic information from studies on dam removal. Our literature review illustrates that although over 1200 dams have been removed in the U.S., fewer than 10% have been scientifically evaluated, and most of these studies were short in duration ( < 4 years) and had limited (1–2 years) or no pre-removal monitoring. The majority of studies focused on hydrologic and geomorphic responses to removal rather than biological and water-quality responses, and few studies were published on linkages between physical and ecological components. Our review illustrates the need for long-term, multidisciplinary case studies, with robust study designs, in order to anticipate the effects of dam removal and inform future decision making.

WIREs Water

Evaluating and mitigating the impact of systematic geolocation error on canopy height measurement performance of GEDI

NASA's Global Ecosystem Dynamics Investigation (GEDI) is designed to provide high-resolution measurements of forest structure and topography between 52° N and S. However, current geolocation accuracy may limit further science applications of footprint-level products as early adopters have found it difficult to align with in-situ forestry inventory data and high-resolution imagery for calibration and validation purpose. Here we developed a new means to rapidly evaluate and mitigate the impact of systematic geolocation error on the performance of GEDI's forest height estimates in the US. By integrating nationwide high-resolution airborne lidar data collected through the 3D Elevation Program of the USGS, we provided optimal geolocation adjustments of GEDI at per beam level and tracked their performances over the first 18-mo. Our results suggest that the first release of GEDI product (R01) can have large systematic geolocation errors at beam level (i.e., 50.5% of beams with an error > 20 m). Its impact on canopy height measurement could drastically vary in space and time, which in turn also offers a separate indirect method to evaluate and track geolocation performance. The second release of GEDI data (R02) has achieved a much-improved systematic geolocation accuracy which is shown to meet the mission requirement (0.2% beams >20 m and 80.8% beams <10 m) and should be able to meet requirements from many practical science applications tolerant to moderate geolocation errors. In sum, our approach has provided a short-term solution for an enhanced Cal/Val strategy for GEDI. While further improvements will certainly be made in future releases, it can potentially create an alternative pathway to generate and validate biomass products by linking GEDI footprint samples directly with in-situ data collections.

Remote Sensing of Environment

Disparate perspectives on evidence from the Cerutti Mastodon site: A reply to Braje et al.

The Perspective editorial by Braje, T., T. D. Dillehay, J. M. Erlandson, S. M. Fitzpatrick, D. K. Grayson, V. T. Holliday, R. L. Kelly, R. G. Klein, D. J. Meltzer, and T. C. Rick (2017. “Were Hominins in California ∼130,000 Years Ago?” PaleoAmerica 3 (3): 200–202) takes issue with our argument [Holen, S. R., T. A. Deméré, D. C. Fisher, R. Fullagar, J. B. Paces, G. T. Jefferson, J. M. Beeton, et al. (2017. “A 130,000-Year-Old Archaeological Site in Southern California, USA.” Nature 544 (7651): 479–483) that the assemblage of bones and stones at the Cerutti Mastodon (CM) site implicates hominin activity in site formation 130,000 years ago. Braje et al. propose instead that features of the CM site can be better explained by geological or other causes unrelated to ancient human activity. However, we contend that their conclusion reflects an incomplete assessment of our evidence. They further propose a standard of evidence at odds with current practice in the philosophy of science, and misuse a commonly quoted aphorism that “extraordinary claims require extraordinary evidence.”

California

Advanced Remote Sensing Research

'Remote sensing' is a generic term for monitoring techniques that collect information without being in physical contact with the object of study. Overhead imagery from aircraft and satellite sensors provides the most common form of remotely sensed data and records the interaction of electromagnetic energy (usually visible light) with matter, such as the Earth's surface. Remotely sensed data are fundamental to geographic science. The Eastern Geographic Science Center (EGSC) of the U.S. Geological Survey (USGS) is currently conducting and promoting the research and development of three different aspects of remote sensing science: spectral analysis, automated orthorectification of historical imagery, and long wave infrared (LWIR) polarimetric imagery (PI).

Fact Sheet

Beowulf Distributed Processing and the United States Geological Survey

Introduction In recent years, the United States Geological Survey's (USGS) National Mapping Discipline (NMD) has expanded its scientific and research activities. Work is being conducted in areas such as emergency response research, scientific visualization, urban prediction, and other simulation activities. Custom-produced digital data have become essential for these types of activities. High-resolution, remotely sensed datasets are also seeing increased use. Unfortunately, the NMD is also finding that it lacks the resources required to perform some of these activities. Many of these projects require large amounts of computer processing resources. Complex urban-prediction simulations, for example, involve large amounts of processor-intensive calculations on large amounts of input data. This project was undertaken to learn and understand the concepts of distributed processing. Experience was needed in developing these types of applications. The idea was that this type of technology could significantly aid the needs of the NMD scientific and research programs. Porting a numerically intensive application currently being used by an NMD science program to run in a distributed fashion would demonstrate the usefulness of this technology. There are several benefits that this type of technology can bring to the USGS's research programs. Projects can be performed that were previously impossible due to a lack of computing resources. Other projects can be performed on a larger scale than previously possible. For example, distributed processing can enable urban dynamics research to perform simulations on larger areas without making huge sacrifices in resolution. The processing can also be done in a more reasonable amount of time than with traditional single-threaded methods (a scaled version of Chester County, Pennsylvania, took about fifty days to finish its first calibration phase with a single-threaded program). This paper has several goals regarding distributed processing technology. It will describe the benefits of the technology. Real data about a distributed application will be presented as an example of the benefits that this technology can bring to USGS scientific programs. Finally, some of the issues with distributed processing that relate to USGS work will be discussed.

Open-File Report

U.S. Geological Survey Subsidence Interest Group Conference; proceedings of the Technical Meeting, Las Vegas, Nevada, February 14-16, 1995

Introduction to Papers: This report is a compilation of short papers that are based on oral presentations summarizing the results of recent research that were given at the third meeting of the Subsidence Interest Group held in Las Vegas, Nevada, February 14-16, 1995. The report includes case studies of land subsidence and aquifer-system deformation resulting from fluid withdrawal, geothermal development, and mine collapse. Methods for monitoring land subsidence using Global Positioning System technology for the rapid and accurate measurement of changes in land-surface altitude also are described. The current status of numerical simulation of land subsidence in the USGS is summarized, and several of the short papers deal with the development and application of new numerical techniques for simulation and quantification of aquifer system deformation. Not all oral presentations made at the meeting are documented in this report. Several of the presentations were of ongoing research and as such, the findings were provisional in nature and were offered at the meeting to stimulate scientific discussion and debate among colleagues. The information presented in this report, although only a subset of the proceedings of the meeting in Las Vegas, should help expand the scientific basis for management decisions to mitigate or control the effects of land subsidence. The short papers describing the results of these studies provide a cross section of ongoing research in aquifer mechanics and land subsidence and also form an assessment of the current technology and 'state of the science.' The analytical and interpretive methods described in this report will be useful to scientists involved in studies of ground-water hydraulics and aquifer-system deformation.

Open-File Report

Advancing dendrochronological studies of fire in the United States

Dendroecology is the science that dates tree rings to their exact calendar year of formation to study processes that influence forest ecology (e.g., Speer 2010 , Amoroso et al., 2017 ). Reconstruction of past fire regimes is a core application of dendroecology, linking fire history to population dynamics and climate effects on tree growth and survivorship. Since the early 20th century when dendrochronologists recognized that tree rings retained fire scars (e.g., Figure 1) , and hence a record of past fires, they have conducted studies worldwide to reconstruct the historical range and variability of fire regimes (e.g., frequency, severity, seasonality, spatial extent), the influence of fire regimes on forest structure and ecosystem dynamics, and the top-down (e.g., climate) and bottom-up (e.g., fuels, topography) drivers of fire that operate at a range of temporal and spatial scales. As in other scientific fields, continued application of dendrochronological techniques to study fires has shaped new trajectories for the science. Here we highlight some important current directions in the United States (US) and call on our international colleagues to continue the conversation with perspectives from other countries.

Fire

High priority needs for range-wide monitoring of North American landbirds

This document is an extension of work done for the Partners in Flight North American Landbird Conservation Plan (Rich et al. 2004). The Continental Plan reviewed conservation status of the 448 native landbird species that regularly breed in the United States and Canada. Two groups of species were identified as having high conservation importance: the PIF Watch List, made up of species for which there is conservation concern, and Stewardship Spices that are particularly characteristic of regional avifaunas. In addition, continental scale monitoring needs were identified for all species. Here we extend the monitoring needs aspect of the Plan, providing additional detail and suggesting the best means of filling the gaps in broad-scale, long-term trend monitoring. This analysis and report was compiled by the Partners in Flight (PIF) Science Committee as a contribution to current work by the North American Bird Conservation Initiative to assess the status of bird population monitoring in North America and to make recommendations for improvements.

Partners in Flight Technical Series

Results of a Wildlife Toxicology Workshop held by the Smithsonian Institution ? Identification and prioritization of problem statements

On March 13-15, 2007 nearly 50 scientists and administrators from the US and Canada participated in a Smithsonian-sponsored Wildlife Toxicology Workshop. Invitees were from academic, government, conservation and the private organizations and were selected to represent the diverse disciplines that encompass wildlife toxicology. The workshop addressed scientific and policy issues, strengths and weaknesses of current research strategies, interdisciplinary and science-based approaches in the study of complex contaminant issues, mechanisms for disseminating data to policy-makers, and the development of a partner network to meet the challenges facing wildlife toxicology over the next decade. Prior to the meeting, participants were asked to submit issues they deemed to be of highest concern which shaped four thematic groups for discussion: Wildlife Toxicology in Education, Risk Assessment, Multiple Stressors/Complex Mixtures, and Sub-Lethal to Population-Level Effects. From these discussion groups, 18 problem statements were developed and prioritized outlining what were deemed the most important issues to address now and into the future. Along with each problem statement participants developed potential solutions and action steps geared to move each issue forward. The workshop served as a stepping stone for action in the field of wildlife toxicology. These problem statements and the resulting action items are presented to the inter-disciplinary wildlife toxicology community for adoption, and future work and action items in these areas are encouraged. The workshop outcome looks to generate conversation and collaboration that will lead to the development of innovative research, future mechanisms for funding, workshops, working groups, and listserves within the wildlife toxicology community.

Book chapter

USGS research on mineral resources, 1985 program and abstracts

The extended abstracts in this volume are summaries of the papers presented orally and as posters in the first V.E. McKelvey Forum on Mineral and Energy Resources, entitled "USGS Research on Mineral Resources-1985." The Forum has been established to improve communication between the USGS and the earth science community by presenting the results of current USGS research on nonrenewable resources in a timely fashion and by providing an opportunity for individuals from other organizations to meet informally with USGS scientists and managers. It is our hope that the McKelvey Forum will help to make USGS programs more responsive to the needs of the earth science community, particularly the mining and petroleum industries, and will foster closer cooperation between organizations and individuals.

Circular

USGS research on energy resources, 1986; program and abstracts

The extended abstracts in this volume are summaries of the papers presented orally and as posters in the second V. E. McKelvey Forum on Mineral and Energy Resources, entitled "USGS Research on Energy Resources-1986." The Forum has been established to improve communication between the USGS and the earth science community by presenting the results of current USGS research on nonrenewable resources in a timely fashion and by providing an opportunity for individuals from other organizations to meet informally with USGS scientists and managers. It is our hope that the McKelvey Forum will help to make USGS programs more responsive to the needs of the earth science community, particularly the mining and petroleum industries, and Win foster closer cooperation between organizations and individuals. The Forum was named after former Director Vincent E. McKelvey in recognition of his lifelong contributions to research, development, and administration in mineral and energy resources, as a scientist, as Chief Geologist, and as Director of the U.S. Geological Survey. The Forum will be an annual event, and its subject matter will alternate between mineral and energy resources. We expect that the format will change somewhat from year to year as various approaches are tried, but its primary purpose will remain the same: to encourage direct communication between USGS scientists and the representatives of other earth-science related organizations. Energy programs of the USGS include oil and gas, coal, geothermal, uranium-thorium, and oil shale; work in these programs spans the national domain, including surveys of the offshore Exclusive Economic Zone. The topics selected for presentation at this McKelvey Forum represent an overview of the scientific breadth of USGS research on energy resources. They include aspects of petroleum occurrence in Eastern United States rift basins, the origin of magnetic anomalies over oil fields, accreted terranes and energy-resource implications, coal quality, geothermal energy sources, integrated geology and chemistry in uranium-deposit studies, and interpretations of sea-floor geology seen in reconnaissance-scale sidescan-sonar mosaics of the Gulf of Mexico and west coast Exclusive Economic Zone. Data are presented that are being used in building models of geothermal energy settings, basin histories, and the occurrence of energy resources. In addition to the technical sessions presenting the results of USGS research, each congressionally mandated USGS Mineral Resource Program has a display outlining plans and progress. We are all excited about this continuing opportunity to disseminate and discuss our research with our colleagues in industry and academia, and we welcome your suggestions on improving this series of Forums.

Circular

Acoustic telemetry observation systems: challenges encountered and overcome in the Laurentian Great Lakes

The Great Lakes Acoustic Telemetry Observation System (GLATOS), organized in 2012, aims to advance and improve conservation and management of Great Lakes fishes by providing information on behavior, habitat use, and population dynamics. GLATOS faced challenges during establishment, including a funding agency-imposed urgency to initiate projects, a lack of telemetry expertise, and managing a flood of data. GLATOS now connects 190+ investigators, provides project consultation, maintains a web-based data portal, contributes data to Ocean Tracking Network’s global database, loans equipment, and promotes science transfer to managers. The GLATOS database currently has 50+ projects, 39 species tagged, 8000+ fish released, and 150+ million tag detections. Lessons learned include (1) seek advice from others experienced in telemetry; (2) organize networks prior to when shared data is urgently needed; (3) establish a data management system so that all receivers can contribute to every project; (4) hold annual meetings to foster relationships; (5) involve fish managers to ensure relevancy; and (6) staff require full-time commitment to lead and coordinate projects and to analyze data and publish results.

Laurentian Great Lakes