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USGS2015

Managing habitat to slow or reverse population declines of the Columbia spotted frog in the Northern Great Basin

Evaluating the effectiveness of habitat management actions is critical to adaptive management strategies for conservation of imperiled species. We quantified the response of a Great Basin population of the Columbia spotted frog ( Rana luteiventris ) to multiple habitat improvement actions aimed to reduce threats and reverse population declines. We used mark-recapture data for 1,394 adult frogs that had been marked by state, federal, and university biologists in 9 ponds representing a single population over a 16-year period from 1997 to 2012. With the use of demographic models, we assessed population-level effects of 1) a grazing exclosure constructed around 6 stock ponds that had been used to water livestock for decades before being fully fenced in 2003, and 2) the construction of 3 new stock ponds in 2003 to provide alternative water sources for livestock and, secondarily, to provide additional frog habitat. These management actions were implemented in response to a decline of more than 80% in population size from 1997 to 2002. We found evidence that excluding cattle from ponds and surrounding riparian habitats resulted in higher levels of frog production (more egg masses), higher adult frog recruitment and survival, and higher population growth rate. We also found that frogs colonized the newly constructed stock ponds within 3 years and frogs began breeding in 2 of them after 5 years. The positive effects of the cattle exclosure and additional production from the new ponds, although notable, did not result in full recovery of the population even 9 years later. This slow recovery may be partly explained by the effects of weather on recruitment rates, particularly the negative effects of harsher winters with late springs and higher fall temperatures. Although our findings point to potential successes of habitat management aimed at slowing or reversing rapidly declining frog populations, our study also suggests that recovering from severe population declines can take many years because of demographic and environmental processes.

Idaho↗

USGS2025

Staying alive: Post-translocation apparent survival of fishes in headwater springs following drought

Objective Increasing fragmentation from constructed barriers, increased water use, and climate change limits the resiliency of stream fish metapopulations by reducing colonization. Management actions such as stocking or translocating fish may help contribute to the resilience of isolated habitats and increase redundancy of populations in intermittent stream networks. Our objective was to determine whether translocating fish into prairie headwater refuges could reestablish or supplement isolated populations. Methods We examined apparent survival and probability of detection of four native, small-bodied fishes that were translocated in 2022 and 2023 to prairie headwater refuges that were affected by a severe drought and experienced slow recovery of their fish assemblages. All the fish were marked with passive integrated transponder tags, allowing us to use a mark–recapture framework to track the fate of these fish. Results Apparent survival was predicted by an interaction between time and translocation site, indicating an important consideration of environmental factors. Approximately one-quarter of the fish remained at site A through the summer of both years, whereas estimates were near zero at site B in both years and mixed across years at site C. The decreases in apparent survival probabilities following flow events suggest that fish may be emigrating during these periods of reconnection. During the lower flow year, more fish remained at the headwater sites and young-of-year fish were captured during long-term sampling, suggesting that the translocated fish reproduced. Conclusions The success of translocation projects will depend on a variety of factors, including management goals, habitat, and hydrology, but the initially high survival reported in this study is encouraging. Difficulties with examining the movement of small fish during hydrologic events limited our conclusions about the relative contributions of mortality and emigration to apparent survival estimates. Despite low yearly apparent survival, we found evidence of reproduction from translocated fish, suggesting that the reestablishment of a viable population is possible.

North American Journal of Fisheries Management↗

USGS2023

Larval cisco and lake whitefish exhibit high distributional overlap within nursery areas

Coregonine fishes, including lake whitefish ( Coregonus clupeaformis ) and cisco ( C. artedi ), are socioecologically important in the Laurentian Great Lakes and of conservation concern, but the processes driving recruitment variability are unclear. In Lake Ontario, cisco and lake whitefish exhibit similar spawning behaviours and early life histories, but population trajectories are diverging. One hypothesis is that sympatric cisco and lake whitefish larvae occupy distinct habitats and experience dissimilar local environmental conditions, despite co-occurrence within nursery areas. We described the spatiotemporal distributions of larval cisco and lake whitefish among multiple Lake Ontario embayment nursery areas, characterised physical habitat features associated with their distributions, determined the degree of spatial habitat partitioning between species and evaluated how habitat niche divergence occurred along an ontogenetic progression. Both species were widely distributed across larval nursery areas, though lake whitefish were less abundant and more narrowly distributed than cisco. Within the yolk sac stage, lake whitefish occupied more nearshore, shallower and colder waters than cisco, indicating potential habitat niche partitioning between congeners. However, distributional differences were subtle and likely driven by differential hatch timing and staggered ontogenetic habitat shifts. Combined, our results illustrate similar habitat use between cisco and lake whitefish through the larval stage and demonstrate that ontogeny and species-specific phenology influence habitat use for these species. This study provides additional evidence that the early life histories of cisco and lake whitefish are highly similar and does not support the hypothesis that larval habitat use differences are a major driver of differential recruitment success for these species.

New York↗

USGS2004

Contaminant exposure and reproductive success of Ospreys (Pandion haliaetus) nesting in Chesapeake Bay regions of concern

The Chesapeake Bay osprey population has more than doubled in size since restrictions were placed on the production and use of DDT and other toxic organochlorine contaminants in the 1970s. Ospreys are now nesting in the most highly polluted portions of the Bay. In 2000 and 2001, contaminant exposure and reproduction were monitored in ospreys nesting in regions of concern, including Baltimore Harbor and the Patapsco River, the Anacostia and middle Potomac rivers, and the Elizabeth River, and a presumed reference site consisting of the South, West, and Rhode rivers. A 'sample egg' from each study nest was collected for contaminant analysis, and the fate of eggs remaining in each nest (n = 14-16/site) was monitored at 7- to 10-day intervals from egg incubation through fledging of young. Ospreys fledged young in regions of concern (observed success: 0.88 -1.53 fledglings/active nest), although productivity was marginal for sustaining local populations in Baltimore Harbor and the Patapsco River and in the Anacostia and middle Potomac rivers. Concentrations of p,p'DDE and many other organochlorine pesticides or metabolites, total PCBs, some arylhydrocarbon receptor-active PCB congeners and polybrominated diphenyl ether congeners, and perfluorooctanesulfonate were often greater in sample eggs from regions of concern compared to the reference site. Nonetheless, logistic regression analyses did not provide evidence linking marginal productivity to p,p' -DDE, total PCBs, or arylhydrocarbon receptor-active PCB congener exposure in regions of concern. In view of the moderate concentrations of total PCBs in eggs from the reference site, concerns related to new and emerging toxicants, and the absence of ecotoxicological data for terrestrial vertebrates in many Bay tributaries, a more thorough spatial evaluation of contaminant exposure in ospreys throughout the Chesapeake may be warranted.

Archives of Environmental Contamination and Toxico↗

USGS2022

Environmental implications of Ptolemaic Period rodents and shrews from the Sacred Falcon Necropolis at Quesna, Egypt (Mammalia: Muridae and Soricidae)

Background Assemblages of mummified and preserved animals in necropoleis of Ptolemaic Period Egypt (ca. 332–30 BC) document some aspects of the ceremonial and religious practices of the ancient Egyptians, but study of these animal remains can also provide insight into the local environments in which the animals and humans lived. Results Excavations of the Sacred Falcon Necropolis at Quesna in the Nile Delta have yielded many thousands of animal remains, mostly of raptors, but also of a lesser number of small, wild mammals. Among the latter, we identified four species of murid rodents (Rodentia: Muridae) and five species of shrews (Eulipotyphla: Soricidae). The soricids are of particular interest because they represent a more diverse assemblage of species than occurs in the delta today. They include one species, Crocidura gueldenstaedtii (Pallas, 1811), that no longer occurs in the delta and another, C. fulvastra (Sundevall, 1843), that is now extirpated from Egypt. Conclusions The coexistence of this diverse small mammal community suggests that a greater availability and variety of mesic habitats were present during the Ptolemaic Period than occur there now. The local mammal faunas recovered at Quesna and other well-studied ancient Egyptian sites together provide evidence of a richer, more complex regional environment along the Nile Valley. They also provide important insight regarding the biogeography of the individual species comprising the faunas and about the extent of faunal turnover since the Ptolemaic Period.

BMC Ecology and Evolution↗

USGS2018

Assessment of potential risks from renewable energy development and other anthropogenic factors to wintering Golden Eagles in the western United States

Wind and other energy development are expanding rapidly and on an unprecedented scale within the range of the Golden Eagle ( Aquila chrysaetos ) while other anthropogenic-related changes, wildfires, invasive plants, drought, and climate change are altering or destroying native habitats occupied by Golden Eagles. However, the potential effects of these factors on North American Golden Eagle populations are largely unknown and the most recent evidence indicates that the population in the western United States is declining slightly. Impediments to evaluating the potential effects of energy development projects on wintering Golden Eagles include issues of scale and a paucity of available information about eagle winter use areas and ecology. We applied a predictive model of eagle winter distribution developed for Idaho and Montana, to Idaho, Utah, Nevada and eastern Oregon to help identify potential wintering areas and identify risks that occur in those areas. The model identifies ~40% of the four state study area as potentially suitable eagle winter habitat and provides a basis for spatial assessment of possible risk factors to eagles wintering there. We used eBird and Christmas Bird Count citizen science datasets for an independent evaluation of the accuracy of our predictive distribution model. The model was robust, accurately predicting the presence of wintering Golden Eagles significantly more often than expected. We used digital environmental datasets (layers) of potential risk factors, in conjunction with model predicted eagle distribution, to better understand and estimate the extent of risks to the wintering eagle population in the study area. These layers represent available data for some of the factors previously identified as risks in the landscape to wintering Golden Eagles. The majority of predicted eagle wintering areas occurred where there was little habitat fragmentation (<10%). All predicted winter areas contained at least one potential risk factor (e.g., potential for energy development); 39.4% of predicted winter areas contained at least two known risk factors. The greatest number of risks often occurred where the human footprint was highest and where eagles were less likely to occur during winter. Our results can be used to help prioritize field surveys for identifying important Golden Eagle winter areas in the western United States and determine potential locations where energy development is least likely to have negative effects on wintering eagles. Survey efforts can be allocated in consideration of management and conservation objectives based on predicted habitat suitability and risk factors. For example, surveys for areas of high suitability and low risk can identify places to focus management for conservation of eagle winter areas. Further, sites proposed for wind energy development could be reviewed initially based on model predicted eagle wintering areas and then surveyed to determine if permitting for development is appropriate.

Book chapter↗

USGS1980

Distribution of modern benthic foraminifers on the New Jersey Outer Continental Shelf

We used samples from 21 stations within a 600 km2 area of the New Jersey Outer Continental Shelf to assess the effects of a hydrodynamic environment on the distribution and redistribution of benthic foraminifers. These samples show that, although the predominant genera (Elphidium, Cibicides, and Saccammina) are the same as those reported by other investigators for this region, the environmental factors that control the generic distribution are more complex than were previously postulated. Generic distribution patterns derived from this study are correlated with the bottom topography and sediment distribution as well as the temperature, salinity, and dissolved oxygen concentrations of the bottom waters. The six predominant species observed in the samples (and their phenotypic variants) are cryophilic forms known to occur in the Virginian and Nova Scotian biogeographic provinces and in Arctic waters. Species distribution patterns also correlate well with bottom topography and hydrographic factors, but may be modified by seasonal fluctuations in test production and by redistribution of dead tests. At most stations, specimens of Elphidium subarcticum were attached to quartz grains. This phenomenon, which has not been reported before, probably is an adaptation to a high-energy environment. The distribution pattern of Elphidium subarcticum along with those of the sessile species Webbinella concava and Vasiglobulina n.sp. corroborate sedimentological evidence that the accumulation of modern sediments in the area is negligible.

New Jersey↗

USGS2016

Terrestrial nitrogen cycling in Earth system models revisited

Understanding the degree to which nitrogen (N) availability limits land carbon (C) uptake under global environmental change represents an unresolved challenge. First-generation ‘C-only’vegetation models, lacking explicit representations of N cycling,projected a substantial and increasing land C sink under rising atmospheric CO 2 concentrations. This prediction was questioned for not taking into account the potentially limiting effect of N availability, which is necessary for plant growth (Hungate et al.,2003). More recent global models include coupled C and N cycles in land ecosystems (C–N models) and are widely assumed to be more realistic. However, inclusion of more processes has not consistently improved their performance in capturing observed responses of the global C cycle (e.g. Wenzel et al., 2014). With the advent of a new generation of global models, including coupled C, N, and phosphorus (P) cycling, model complexity is sure to increase; but model reliability may not, unless greater attention is paid to the correspondence of model process representations ande mpirical evidence. It was in this context that the ‘Nitrogen Cycle Workshop’ at Dartington Hall, Devon, UK was held on 1–5 February 2016. Organized by I. Colin Prentice and Benjamin D. Stocker (Imperial College London, UK), the workshop was funded by the European Research Council,project ‘Earth system Model Bias Reduction and assessing Abrupt Climate change’ (EMBRACE). We gathered empirical ecologists and ecosystem modellers to identify key uncertainties in terrestrial C–N cycling, and to discuss processes that are missing or poorly represented in current models.

New Phytologist↗

USGS2011

Late Quaternary environmental change inferred from phytoliths and other soil-related proxies: Case studies from the central and southern Great Plains, USA

This study investigates stable carbon isotopes ( δ 13 C), opal phytolith assemblages, burnt phytoliths, microscopic charcoal and Sporormiella spores from modern soils and paleosols in Kansas and Oklahoma. Grass and dicot phytoliths in combination with δ 13 C are used as proxies for reconstructing the structure of grasslands and woodlands. Burnt grass phytoliths and microscopic charcoal are evaluated as proxies for reconstructing paleofire incidence. Concentrations of the fungal spore Sporormiella are used as a proxy for assessing large herbivore activity. These proxies were tested on various modern grassland communities of the central and southern Great Plains, including areas with bison, cattle, and small herbivores, and areas under different fire frequencies. Opal phytolith assemblages and δ 13 C values show that before cal 11 ka, C 3 grasses and woody plants predominated in areas that today are dominated by C 4 grasses. The origin of the shortgrass prairie dates back to about cal 10 ka. The origin of the tallgrass prairie, however, is not clear as phytolith data show variable assemblages throughout the Holocene (mixed-grass, tallgrass, and tallgrass–woodland mosaic). Different proxies (burnt phytoliths vs. charcoal) reveal different fire frequencies, but it is apparent that microfossil evidence for fire incidence is closely related to the abundance of woody plants in the landscape. Before cal 12 ka, soils show somewhat elevated concentration of Sporormiella , but lower concentrations than the modern high-density bison and cattle grazing areas. Throughout the Holocene, Sporormiella frequencies are low, which suggests lower large ungulate densities and perhaps high mobility.

Colorado, Kansas, New Mexico, Oklahoma, Texas↗

USGS2025

Perfluorodecanoic acid (PFDA) disrupts immune regulation via the toll-like receptor signaling pathway in zebrafish

As there are a growing number of per- and polyfluoroalkyl substances (PFAS) alternative substitutes applied globally, it remains paramount to characterize their potential health risks. Perfluorodecanoic acid (PFDA) is the most common alternative PFAS detected in the environment; however, its toxic effects and underlying mechanism of action to aquatic biota remains unclear. In this study, we present in vitro evidence of PFDA-induced immunotoxicity and gain insight into underlying molecular mechanisms. PFDA induced immune dysfunction in zebrafish primarily through immunosuppression, apoptosis, and inflammatory response which further cascaded to suppress innate and adaptive immunities, ultimately weaking the ability of larvae to defend against pathogenic infection. PFDA-induced immunotoxicity was driven by a dysregulation in the toll-like receptor (TLR) signaling pathway, which was validated through a cotreatment of PFDA with either a morpholino knockdown or inhibitor of myeloid differentiation factor 88. Comparative toxicity studies were carried out with a subset of other alternative PFAS (PFBA, PFOA, PFNA) and it was found that PFDA posed a greater immunotoxic response than other commonly identified PFAS in the environment. This work identified a major target of PFDA, disrupting immune function through the TLR signaling pathway, while inducing a greater toxic response among other tested PFAS, which provides novel insights into understanding the potential environmental risks of PFAS substitutes.

Environmental Science & Technology↗

USGS2020

Planktic foraminiferal test size and weight response to the late Pliocene environment

Atmospheric carbon dioxide ( p CO 2 atm ) is impacting the ocean and marine organisms directly via changes in carbonate chemistry and indirectly via a range of changes in physical parameters most dominantly temperature. To assess potential impacts of climate change on carbonate production in the open ocean, we measured size and weight of planktic foraminifers during the late Pliocene at p CO 2 atm concentrations comparable to today and global temperatures 2 to 3 °C warmer. Size of all foraminifers was measured at Atlantic Ocean Deep Sea Drilling Project (DSDP) Site 610, Ocean Drilling Program (ODP) Site 999, and Integrated Ocean Drilling Program (IODP) Site U1313. Test size was smaller during the Pliocene than in modern assemblages under the same environmental conditions. During the cold marine isotope stage (MIS) M2, size increased at Site 999, potentially linked to intensified stratification of the surface ocean in response to the closure of the Central American Seaway. At Site U1313, test size tracks the warming throughout the late Pliocene. Size-normalized weight (SNW) of Globigerina bulloides at Site U1313 decreased during warmer temperature intervals. SNW of Globigerinoides ruber (white) at Site 999 displays high-frequency variability not correlated to temperature. Yet during the glacial period within MIS M2, test weight was higher during higher temperatures. Our results support studies in the modern ocean, which challenge the view that carbonate chemistry is the primary driver for calcification. To better understand processes driving changes in SNW, computer tomography was used to quantify calcite to volume ratios. During interglacial periods, lower calcite volume but higher test volume suggests less suitable conditions for calcification. As this signal is not evident in SNW, subtle changes in calcification might not be observed by the weight-based method.

Paleoceanography and Paleoclimatology↗

USGS2012

Climate downscaling effects on predictive ecological models: a case study for threatened and endangered vertebrates in the southeastern United States

High-resolution (downscaled) projections of future climate conditions are critical inputs to a wide variety of ecological and socioeconomic models and are created using numerous different approaches. Here, we conduct a sensitivity analysis of spatial predictions from climate envelope models for threatened and endangered vertebrates in the southeastern United States to determine whether two different downscaling approaches (with and without the use of a regional climate model) affect climate envelope model predictions when all other sources of variation are held constant. We found that prediction maps differed spatially between downscaling approaches and that the variation attributable to downscaling technique was comparable to variation between maps generated using different general circulation models (GCMs). Precipitation variables tended to show greater discrepancies between downscaling techniques than temperature variables, and for one GCM, there was evidence that more poorly resolved precipitation variables contributed relatively more to model uncertainty than more well-resolved variables. Our work suggests that ecological modelers requiring high-resolution climate projections should carefully consider the type of downscaling applied to the climate projections prior to their use in predictive ecological modeling. The uncertainty associated with alternative downscaling methods may rival that of other, more widely appreciated sources of variation, such as the general circulation model or emissions scenario with which future climate projections are created.

Alabama;Florida;Georgia;Mississippi;South Carolina↗

USGS2007

Chapel Hill bisphenol A expert panel consensus statement: Integration of mechanisms, effects in animals and potential to impact human health at current levels of exposure

This document is a summary statement of the outcome from the meeting: “ Bisphenol A: An Examination of the Relevance of Ecological, In vitro and Laboratory Animal Studies for Assessing Risks to Human Health ” sponsored by both the NIEHS and NIDCR at NIH/DHHS, as well as the US-EPA and Commonweal on the estrogenic environmental chemical bisphenol A (BPA, 2,2-bis(4-hydroxyphenyl)propane; CAS# 80-05-7). The meeting was held in Chapel Hill, NC, 28–30 November 2006 due to concerns about the potential for a relationship between BPA and negative trends in human health that have occurred in recent decades. Examples include increases in abnormal penile/urethra development in males, early sexual maturation in females, an increase in neurobehavioral problems such as attention deficit hyperactivity disorder (ADHD) and autism, an increase in childhood and adult obesity and type 2 diabetes, a regional decrease in sperm count, and an increase in hormonally mediated cancers, such as prostate and breast cancers. Concern has been elevated by published studies reporting a relationship between treatment with “low doses” of BPA and many of theses negative health outcomes in experimental studies in laboratory animals as well as in vitro studies identifying plausible molecular mechanisms that could mediate such effects. Importantly, much evidence suggests that these adverse effects are occurring in animals within the range of exposure to BPA of the typical human living in a developed country, where virtually everyone has measurable blood, tissue and urine levels of BPA that exceed the levels produced by doses used in the “low dose” animal experiments.

Reproductive Toxicology↗

USGS2024

The potential for species distribution models to distinguish source populations from sinks

1. While species distribution models (SDM) are frequently used to predict species occurrences to help inform conservation management, there is limited evidence evaluating whether habitat suitability can reliably predict intrinsic growth rates or distinguish source from sink populations. Filling this knowledge gap is critical for conservation science, as applications of SDMs for management purposes ultimately depend on these typically unobserved population or metapopulation dynamics. 2. Using regression, we associate previously published population level estimates of intrinsic growth and abundance derived from a Bayesian analysis of mark-recapture data for 17 bird species found in the contiguous United States with SDM habitat suitability estimates fitted here to opportunistic data for these same species. We then use AUC to measure how well SDMs can distinguish populations categorized as sources and sinks, depending on their intrinsic growth rates estimated from the mark-recapture data. We built SDMs using two different approaches, boosted regression trees (BRT) and Generalized Linear Models (GLM), and compared their predictive performance. Each SDM was built with presence points obtained from eBird and 10 environmental variables previously selected to model intrinsic growth rates and abundance for these species. 3. We show that SDMs built with opportunistic data are poor predictors of species demography in general; both BRT and GLM explained very little spatial variation of intrinsic growth rate and population abundance (median R2 across 17 species was close to 0.1 for both SDM methods). SDMs do, however, estimate higher suitability for source populations as compared to sinks. Out of 13 species which had both source and sink populations, both BRT and GLM had AUC values greater than 0.7 for 7 species when discriminating between sources and sinks. 4. Habitat suitability have the potential to be a useful measure to indicate a population’s ability to sustain itself as a source population, however more research on a diverse set of taxa is essential to fully explore this potential. This interpretation of habitat suitability can be particularly useful for conservation practice, and identification of explicit cases of when and how SDMs fail to match population demography can be informative for advancing ecological theory.

Journal of Animal Ecology↗

USGS2017

Putting flow-ecology relationships into practice: A decision-support system to assess fish community response to water-management scenarios

This paper presents a conceptual framework to operationalize flow–ecology relationships into decision-support systems of practical use to water-resource managers, who are commonly tasked with balancing multiple competing socioeconomic and environmental priorities. We illustrate this framework with a case study, whereby fish community responses to various water-management scenarios were predicted in a partially regulated river system at a local watershed scale. This case study simulates management scenarios based on interactive effects of dam operation protocols, withdrawals for municipal water supply, effluent discharges from wastewater treatment, and inter-basin water transfers. Modeled streamflow was integrated with flow–ecology relationships relating hydrologic departure from reference conditions to fish species richness, stratified by trophic, reproductive, and habitat characteristics. Adding a hypothetical new water-withdrawal site was predicted to increase the frequency of low-flow conditions with adverse effects for several fish groups. Imposition of new reservoir release requirements was predicted to enhance flow and fish species richness immediately downstream of the reservoir, but these effects were dissipated further downstream. The framework presented here can be used to translate flow–ecology relationships into evidence-based management by developing decision-support systems for conservation of riverine biodiversity while optimizing water availability for human use.

Water↗

USGS2012

Laboratory toxicity and benthic invertebrate field colonization of Upper Columbia River sediments: Finding adverse effects using multiple lines of evidence

From 1930 to 1995, the Upper Columbia River (UCR) of northeast Washington State received approximately 12 million metric tons of smelter slag and associated effluents from a large smelter facility located in Trail, British Columbia, approximately 10 km north of the United States–Canadian border. Studies conducted during the past two decades have demonstrated the presence of toxic concentrations of heavy metals in slag-based sandy sediments, including cadmium, copper, zinc, and lead in the UCR area as well as the downstream reservoir portion of Lake Roosevelt. We conducted standardized whole-sediment toxicity tests with the amphipod Hyalella azteca (28-day) and the midge Chironomus dilutus (10-day) on 11 samples, including both UCR and study-specific reference sediments. Metal concentrations in sediments were modeled for potential toxicity using three approaches: (1) probable effects quotients (PEQs) based on total recoverable metals (TRMs) and simultaneously extracted metals (SEMs); (2) SEMs corrected for acid-volatile sulfides (AVS; i.e., ∑SEM − AVS); and (3) ∑SEM − AVS normalized to the fractional organic carbon (f oc ) (i.e., ∑SEM − AVS/f oc ). The most highly metal-contaminated sample (∑PEQ TRM = 132; ∑PEQ SEM = 54; ∑SEM − AVS = 323; and ∑SEM − AVS/ foc = 64,600 umol/g) from the UCR was dominated by weathered slag sediment particles and resulted in 80% mortality and 94% decrease in biomass of amphipods; in addition, this sample significantly decreased growth of midge by 10%. The traditional ∑AVS – SEM, uncorrected for organic carbon, was the most accurate approach for estimating the effects of metals in the UCR. Treatment of the toxic slag sediment with 20% Resinex SIR-300 metal-chelating resin significantly decreased the toxicity of the sample. Samples ∑SEM − AVS > 244 was not toxic to amphipods or midge in laboratory testing, indicating that this value may be an approximate threshold for effects in the UCR. In situ benthic invertebrate colonization studies in an experimental pond (8-week duration) indicated that two of the most metal-contaminated UCR sediments (dominated by high levels of sand-sized slag particles) exhibited decreased invertebrate colonization compared with sand-based reference sediments. Field-exposed SIR-300 resin samples also exhibited decreased invertebrate colonization numbers compared with reference materials, which may indicate behavioral avoidance of this material under field conditions. Multiple lines of evidence (analytical chemistry, laboratory toxicity, and field colonization results), along with findings from previous studies, indicate that high metal concentrations associated with slag-enriched sediments in the UCR are likely to adversely impact the growth and survival of native benthic invertebrate communities. Additional laboratory toxicity testing, refinement of the applications of sediment benchmarks for metal toxicity, and in situ benthic invertebrate studies will assist in better defining the spatial extent, temporal variations, and ecological impacts of metal-contaminated sediments in the UCR system.

Trail↗

USGS2022

Subspecies differentiation and range-wide genetic structure are driven by climate in the California gnatcatcher, a flagship species for coastal sage scrub conservation

Understanding genetic structure and diversity within species can uncover associations with environmental and geographic attributes that highlight adaptive potential and inform conservation and management. The California gnatcatcher, Polioptila californica , is a small songbird found in desert and coastal scrub habitats from the southern end of Baja California Sur to Ventura County, California. Lack of congruence among morphological subspecies hypotheses and lack of measurable genetic structure found in a few genetic markers led to questions about the validity of subspecies within P. californica and the listing status of the coastal California gnatcatcher, P. c. californica . As a U.S. federally threatened subspecies, P. c. californica is recognized as a flagship for coastal sage scrub conservation throughout southern California. We used restriction site-associated DNA sequencing to develop a genomic dataset for the California gnatcatcher. We sampled throughout the species' range, examined genetic structure, gene–environment associations, and demographic history, and tested for concordance between genetic structure and morphological subspecies groups. Our data support two distinct genetic groups with evidence of restricted movement and gene flow near the U.S.- Mexico international border. We found that climate-associated outlier loci were more strongly differentiated than climate neutral loci, suggesting that local climate adaptation may have helped to drive differentiation after Holocene range expansions. Patterns of habitat loss and fragmentation are also concordant with genetic substructure throughout the southern California portion of the range. Finally, our genetic data supported the morphologically defined P. c. californica as a distinct group, but there was little evidence of genetic differentiation among other previously hypothesized subspecies in Baja California. Our data suggest that retaining and restoring connectivity, and protecting populations, particularly at the northern range edge, could help preserve existing adaptive potential to allow for future range expansion and long-term persistence of the California gnatcatcher.

California↗

USGS2017

Ecological regime shift drives declining growth rates of sea turtles throughout the West Atlantic

Somatic growth is an integrated, individual-based response to environmental conditions, especially in ectotherms. Growth dynamics of large, mobile animals are particularly useful as bio-indicators of environmental change at regional scales. We assembled growth rate data from throughout the West Atlantic for green turtles, Chelonia mydas , which are long-lived, highly migratory, primarily herbivorous mega-consumers that may migrate over hundreds to thousands of kilometers. Our dataset, the largest ever compiled for sea turtles, has 9690 growth increments from 30 sites from Bermuda to Uruguay from 1973 to 2015. Using generalized additive mixed models, we evaluated covariates that could affect growth rates; body size, diet, and year have significant effects on growth. Growth increases in early years until 1999, then declines by 26% to 2015. The temporal (year) effect is of particular interest because two carnivorous species of sea turtles – hawksbills, Eretmochelys imbricata, and loggerheads, Caretta caretta – exhibited similar significant declines in growth rates starting in 1997 in the West Atlantic, based on previous studies. These synchronous declines in productivity among three sea turtle species across a trophic spectrum provide strong evidence that an ecological regime shift (ERS) in the Atlantic is driving growth dynamics. The ERS resulted from a synergy of the 1997/1998 El Niño Southern Oscillation (ENSO) – the strongest on record – combined with an unprecedented warming rate over the last two to three decades. Further support is provided by the strong correlations between annualized mean growth rates of green turtles and both sea surface temperatures (SST) in the West Atlantic for years of declining growth rates ( r = -0.94) and the Multivariate ENSO Index (MEI) for all years ( r = 0.74). Granger-causality analysis also supports the latter finding. We discuss multiple stressors that could reinforce and prolong the effect of the ERS. This study demonstrates the importance of region-wide collaborations.

Global Change Biology↗