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Abundance: Population size and density estimation

Estimates of population size (total number of individuals) or density (number of individuals per unit area) are some of the most basic requirements for wildlife research and management. This article provides a brief overview of approaches for wildlife population estimation. These include habitat-based approaches such as quadrat, line intercept, distance, and repeated count methods, as well as animal-based approaches such as capture–recapture and harvest methods. In contrast to methods that only index changes in these parameters, estimates of size or density must account for the probability that an individual will be included in the sample used for estimation. The essential differences in the approaches are in how the samples are obtained and how the sampling probabilities are estimated.

Book chapter

Abundance: Population size and density estimation

Estimates of population size (total number of individuals) or density (number of individuals per unit area) are some of the most basic requirements for wildlife research and management. This article provides a brief overview of approaches for wildlife population estimation. These include habitat‐based approaches such as quadrat, line intercept, distance, and repeated count methods, as well as animal‐based approaches such as capture–recapture and harvest methods. In contrast to methods that only index changes in these parameters, estimates of size or density must account for the probability that an individual will be included in the sample used for estimation. The essential differences in the approaches are in how the samples are obtained and how the sampling probabilities are estimated.

Book chapter

Pre-fieldwork surveys

In sea-level studies, initial surveys at the office or library can increase a project’s likelihood of success. Pre-fieldwork surveys should begin with a thorough review of prior research literature that appraises available data, identifies data gaps, and places the project objectives into a broader scientific context. Whereas peer reviewed journal articles may contain a wealth of research findings, often the most useful maps, historical documents, images, and other data critical for sea-level research are discovered by searching government files, libraries, museums, unpublished reports, or, increasingly, online digital data collections.

Book chapter

Volcanic unrest and hazard communication in Long Valley Volcanic Region, California

The onset of volcanic unrest in Long Valley Caldera, California, in 1980 and the subsequent fluctuations in unrest levels through May 2016 illustrate: (1) the evolving relations between scientists monitoring the unrest and studying the underlying tectonic/magmatic processes and their implications for geologic hazards, and (2) the challenges in communicating the significance of the hazards to the public and civil authorities in a mountain resort setting. Circumstances special to this case include (1) the sensitivity of an isolated resort area to media hype of potential high-impact volcanic and earthquake hazards and its impact on potential recreational visitors and the local economy, (2) a small permanent population (~8000), which facilitates face-to-face communication between scientists monitoring the hazard, civil authorities, and the public, and (3) the relatively frequent turnover of people in positions of civil authority, which requires a continuing education effort on the nature of caldera unrest and related hazards. Because of delays associated with communication protocols between the State and Federal governments during the onset of unrest, local civil authorities and the public first learned that the U.S. Geological Survey was about to release a notice of potential volcanic hazards associated with earthquake activity and 25-cm uplift of the resurgent dome in the center of the caldera through an article in the Los Angeles Times published in May 1982. The immediate reaction was outrage and denial. Gradual acceptance that the hazard was real required over a decade of frequent meetings between scientists and civil authorities together with public presentations underscored by frequently felt earthquakes and the onset of magmatic CO 2 emissions in 1990 following a 11-month long earthquake swarm beneath Mammoth Mountain on the southwest rim of the caldera. Four fatalities, one on 24 May 1998 and three on 6 April 2006, underscored the hazard posed by the CO 2 emissions. Initial response plans developed by county and state agencies in response to the volcanic unrest began with “The Mono County Volcano Contingency Plan” and “Plan Caldera” by the California Office of Emergency Services in 1982–84. They subsequently became integrated in the regularly updated County Emergency Operation Plan. The alert level system employed by the USGS also evolved from the three-level “Notice-Watch-Warning” system of the early 1980s through a five level color-code to the current “Normal-Advisory-Watch-Warning” ground-based system in conjunction with the international 4-level aviation color-code for volcanic ash hazards. Field trips led by the scientists proved to be a particularly effective means of acquainting local residents and officials with the geologically active environment in which they reside. Relative caldera quiescence from 2000 through 2011 required continued efforts to remind an evolving population that the hazards posed by the 1980–2000 unrest persisted. Renewed uplift of the resurgent dome from 2011 to 2014 was accompanied by an increase in low-level earthquake activity in the caldera and beneath Mammoth Mountain and continues through May 2016. As unrest levels continue to wax and wane, so will the communication challenges.

Book chapter

The role of floodplain restoration in mitigating flood risk, Lower Missouri River, USA

Recent extreme floods on the Lower Missouri River have reinvigorated public policy debate about the potential role of floodplain restoration in decreasing costs of floods and possibly increasing other ecosystem service benefits. The first step to addressing the benefits of floodplain restoration is to understand the interactions of flow, floodplain morphology, and land cover that together determine the biophysical capacity of the floodplain. In this article we address interactions between ecological restoration of floodplains and flood-risk reduction at 3 scales. At the scale of the Lower Missouri River corridor (1300 km) floodplain elevation datasets and flow models provide first-order calculations of the potential for Missouri River floodplains to store floods of varying magnitude and duration. At this same scale assessment of floodplain sand deposition from the 2011 Missouri River flood indicates the magnitude of flood damage that could potentially be limited by floodplain restoration. At the segment scale (85 km), 1-dimensional hydraulic modeling predicts substantial stage reductions with increasing area of floodplain restoration; mean stage reductions range from 0.12 to 0.66 m. This analysis also indicates that channel widening may contribute substantially to stage reductions as part of a comprehensive strategy to restore floodplain and channel habitats. Unsteady 1-dimensional flow modeling of restoration scenarios at this scale indicates that attenuation of peak discharges of an observed hydrograph from May 2007, of similar magnitude to a 10 % annual exceedance probability flood, would be minimal, ranging from 0.04 % (with 16 % floodplain restoration) to 0.13 % (with 100 % restoration). At the reach scale (15–20 km) 2-dimensional hydraulic models of alternative levee setbacks and floodplain roughness indicate complex processes and patterns of flooding including substantial variation in stage reductions across floodplains depending on topographic complexity and hydraulic roughness. Detailed flow patterns captured in the 2-dimensional model indicate that most floodplain storage occurs on the rising limb of the flood as water flows into floodplain bottoms from downstream; at a later time during the rising limb this pattern is reversed and the entire bottom conveys discharge down the valley. These results indicate that flood-risk reduction by attenuation is likely to be small on a large river like the Missouri and design strategies to optimize attenuation and ecological restoration should focus on frequent floods (20–50 % annual exceedance probability). Local stage reductions are a more certain benefit of floodplain restoration but local effects are highly dependent on magnitude of flood discharge and how floodplain vegetation communities contribute to hydraulic roughness. The most certain flood risk reduction benefit of floodplain restoration is avoidance of flood damages to crops and infrastructure.

Iowa, Kansas, Minnesota, Missouri, Nebraska, South

Northern Cascadia Margin gas hydrates — Regional geophysical surveying, IODP drilling leg 311, and cabled observatory monitoring

This article reviews extensive geophysical survey data, ocean drilling results and long-term seafloor monitoring that constrain the distribution and concentration of gas hydrates within the accretionary prism of the northern Cascadia subduction margin, located offshore Vancouver Island in Canada. Seismic surveys and geologic studies conducted since the 1980s have mapped the bottom simulating reflector (BSR), detected gas hydrate occurrence and estimated gas hydrate and free gas concentrations. Additional constraints were obtained from seafloor-towed, controlled-source electromagnetic surveying. A component of these studies has been the examination of low-temperature seafloor vents and seeps that emit gas and fluids into the ocean. These features are identified seismically as chimney-like zones of reduced acoustic reflectivity within the sediment stratigraphy, functioning as conduits for gas and fluid migration from below the BSR to the seafloor. Gas hydrates have been recovered from the seafloor and from sediment cores at vent sites, mostly in massive (nodular) form and as a vein-like fracture filling. The Ocean Networks Canada cabled NEPTUNE observatory has gathered extensive continuous, long-term observations on gas hydrate dynamics at the seafloor and in boreholes at two nodes on the continental slope featuring high gas hydrate concentrations. Measurements taken at the observatory include a time-series of gas bubble emission rates, changes in the near-seafloor electromagnetic structure and seafloor compliance linked to gas hydrate formation and dissociation. Two Integrated Ocean Drilling Program (IODP) expeditions collected cores, measured downhole properties and deployed downhole instruments within the central accretionary prism. At IODP Site U1364, pore pressures are being monitored above and below the base of the gas hydrate stability zone at a slope setting using an “Advanced Circulation Obviation Retrofit Kit” (A-CORK). Downhole pore pressures, temperatures and electrical resistivities also are being monitored at IODP Site U1416 using the “Simple Cabled Instrument for Measuring Parameters In Situ” (SCIMPI) tool at a vent site from near-seafloor to just above the base of the gas hydrate stability zone.

British Columbia

Land 3D-seismic data: Preprocessing quality control utilizing survey design specifications, noise properties, normal moveout, first breaks, and offset

The recent proliferation of the 3D reflection seismic method into the near-surface area of geophysical applications, especially in response to the emergence of the need to comprehensively characterize and monitor near-surface carbon dioxide sequestration in shallow saline aquifers around the world, justifies the emphasis on cost-effective and robust quality control and assurance (QC/QA) workflow of 3D seismic data preprocessing that is suitable for near-surface applications. The main purpose of our seismic data preprocessing QC is to enable the use of appropriate header information, data that are free of noise-dominated traces, and/or flawed vertical stacking in subsequent processing steps. In this article, I provide an account of utilizing survey design specifications, noise properties, first breaks, and normal moveout for rapid and thorough graphical QC/QA diagnostics, which are easy to apply and efficient in the diagnosis of inconsistencies. A correlated vibroseis time-lapse 3D-seismic data set from a CO 2 -flood monitoring survey is used for demonstrating QC diagnostics. An important by-product of the QC workflow is establishing the number of layers for a refraction statics model in a data-driven graphical manner that capitalizes on the spatial coverage of the 3D seismic data. ?? China University of Geosciences (Wuhan) and Springer-Verlag GmbH 2009.

Conference Paper

Swimming and other activities: applied aspects of fish swimming performance

Human activities such as hydropower development, water withdrawals, and commercial fisheries often put fish species at risk. Engineered solutions designed to protect species or their life stages are frequently based on assumptions about swimming performance and behaviors. In many cases, however, the appropriate data to support these designs are either unavailable or misapplied. This article provides an overview of the state of knowledge of fish swimming performance – where the data come from and how they are applied – identifying both gaps in knowledge and common errors in application, with guidance on how to avoid repeating mistakes, as well as suggestions for further study.

Book chapter

1.13 – Emerging contaminants

Since the Industrial Revolution, a diversity of large-scale chemical innovations has impacted aquatic systems in urban environments. Beginning in the 1990s, there has been a growing scientific interest and public awareness of the effects of the chemicals used in domestic, commercial, industrial, and agricultural applications, referred to in this article as ‘emerging contaminants’ (ECs), on ecosystem and human health. The growing global population and its increasing demands on water supplies in conjunction with climate-induced changes in hydrologic regimes place stress on freshwater resources, resulting in a greater reliance on reuse of reclaimed municipal wastewater treatment plant (WWTP) effluents to meet human and environmental needs. WWTP effluents are a major source of ECs, and it is important to have an understanding of the chemical composition of the reclaimed water, because many ECs are biologically active and the effects of chronic exposure to low concentration complex mixtures are unknown. Several classes of ECs that have been shown to be widespread in the aquatic environment are discussed in this chapter, including surfactants, complexing agents, fragrances, antimicrobials, industrial chemicals, pharmaceuticals, natural and synthetic estrogens, and disinfection byproducts. All of these compounds are biologically active via a variety of modes of action, and can occur in aquatic systems at concentrations ranging from <0.001 to >100 μg l −1 .

Book chapter

Blending local scale information for developing agricultural resilience in Ethiopia

This brief article looks at the intersection of climate, land cover/land use, and population trends in the world's most food insecure country, Ethiopia. As a result of warming in the Indian and Western Pacific oceans, Ethiopia has experienced substantial drying over the past 20 years. We intersect the spatial pattern of this drying with high resolution climatologies, maps of agricultural expansion, population data, and socioeconomic livelihoods information to suggest that the coincidence of drying and agricultural expansion in south-central Ethiopia is likely adversely affecting a densely populated region with high levels of poverty and low wage levels.

Book chapter

Heat budget of lakes

This article gives an overview of the heat fluxes between lakes and their environment. The heat budget of most lakes is dominated by heat fluxes at the lake surface, especially shortwave radiation, incoming and outgoing longwave radiation, and the latent heat flux. The seasonality of these fluxes is the most important driver for seasonal mixing processes in lakes. Changes in heat fluxes and the resulting changes in lake thermal structure are the most direct impact of climate change on lakes.

Book chapter

Teams, networks, and networks of networks advancing our understanding and conservation of inland waters

Networks are defined as groups of interconnected people and things, and by this definition, networks play a major role in the science of inland waters. In this article, we bring the latest social network research to understand and improve inland waters science and conservation outcomes. What we found is that relationships matter. Different teams and networks have different objectives and lifespans. Consider this: Data collection networks may persist for decades, whereas knowledge-generating teams may exist only for months. The structure of connections in a network determines how easily information or resources can flow or pass through a network, which then influences the ability of the network to accomplish work like creating and applying new knowledge, integrating knowledge across fields, or coordinating collective action. When independent networks designed around different purposes become connected to achieve new goals, a network of networks is formed, where each layer is a unique network defined by social, geographic, and temporal boundaries and distinct types of connections. This structure has a lot of potential for transformative work, but is especially susceptible to failure if one of the cross-network connections fails. From the smallest of inland waters research teams to the largest, multi-institutional, international collaborations, an understanding of how the connections between people are created and maintained can be used to set up conditions for success.

Book chapter

Worldwide wetland loss and conservation of biodiversity and ecosystem services

Aim : Best strategies for future conservation and management to address global and regional trends in wetland loss and degradation are assessed in this article. Main concepts covered : Direct drivers of wetland loss and change include land drainage and filling, hydrologic alteration, degradation from pollutants and sediments, and conversion to agriculture, urban and industrial usage. Estimates of global wetland loss are as high as 87% since 1700 CE. All regions of the world have lost wetland area. The designation of wetland protected area reduces disturbance by humans and supports the conservation of biodiversity and habitat. Protected areas have been designated by local, state, or federal entities, NGOs (e.g., Nature Conservancy), and the Ramsar Convention on Wetlands. Protected wetlands have great value for human society. For example, wetlands such as peatland and swamp store carbon that would otherwise be released as greenhouse gases to the atmosphere. A case study of the Keoladeo National Park, Rajasthan, India underscores the importance of maintaining water supply to maintain aquatic vegetation in protected wetlands. Conclusion/outlook : Given the combined stresses of land-use and climate change to wetland protected areas, management of altered wetlands may improve their function. Beneficial management actions can include freshwater remediation of hydrologically-altered floodplains, improved wetland reserve design, assisted migration, and the softening of burning/cutting during drought. A better knowledge of potential of management actions to remediate land-use change will be helpful in addressing protected area management to promote conservation in the future.

Book chapter

Pollen records, postglacial: Southeastern North America

Pollen records from the unglaciated southeastern region of North America provide an overview of biogeographic changes associated with vegetational migration northward following the retreat of the Laurentide Ice Sheet. Changing insolation during the Holocene affected forest composition on the Coastal Plain, and rising sea level controlled the distribution of marsh and forested wetlands throughout the middle and late Holocene. Land clearance and management since European colonization had significant impacts on vegetation during the last few centuries. This article summarizes spatial and temporal patterns of vegetation in southeastern North America during the last 22.5 cal ka BP.

Book chapter

Stable isotopes in mid-ocean ridge hydrothermal systems: Interactions between fluids, minerals, and organisms

Studies of abundance variations of light stable isotopes in nature have had a tremendous impact on all aspects of geochemistry since the development, in 1947, of a gas source isotope ratio mass spectrometer capable of measuring small variations in stable isotope ratios (Nice, 1947]. Stable isotope geochemistry is now a mature field, as witnessed by the proliferation of commercially available mass spectrometers installed at virtually every major academic, government, and private-sector research geochemistry laboratory. A recent search of a literature database revealed over 3,000 articles that utilized stable isotope geochemistry over the last 20 years. Nonetheless, many exciting new technical developments are leading to exciting new discoveries and applications. In particular, micro-analytical techniques involving new generations of laser- and ion-microprobes are revolutionizing the types of analyses that can be done on spot sizes as small as a few tens of micrometers [Shanks and Criss, 1989]. New generations of conventional gas source and thermal ionization mass spectrometers, with high levels of automation and increased sensitivity and precision, are allowing analyses of large numbers of samples, like those needed for stable isotope stratigraphy in marine sediments, and are enabling the development and application of new isotopic systems.

Book chapter

Communication strategy of the U.S. Geological Survey Hawaiian Volcano Observatory during the lava-flow crisis of 2014–2015, Kilauea Volcano, Hawaii

In 2014–2015, a slow-moving pāhoehoe lava flow from the remote Pu‘u ‘Ō‘ō vent on Kīlauea Volcano advanced 20 km into populated areas of the Puna District on the Island of Hawai‘i. The staff of the U.S. Geological Survey’s (USGS) Hawaiian Volcano Observatory (HVO) mobilized their resources to closely monitor the flow and provide up-to-date information to the Hawai‘i County Civil Defense (HCCD) agency, the public, and the news media. Scientists issued formal USGS notifications about the flow and Kīlauea’s two eruptions, prepared maps and annotated photographs, infrared images, and videos for dissemination online, and wrote weekly “Volcano Watch” articles for local newspapers. They also provided regular briefings for federal, state, and county agency representatives, answered questions during near-daily briefings with local and national media, and offered information through an established lecture series and participation in community emergency preparedness fairs. Noteworthy among the communication activities was a series of public meetings organized by the Hawai‘i County mayor’s office and led by the HCCD administrator. The meetings were a regular forum for many HVO scientists to talk directly and frequently with residents, business owners, elected officials, and other stakeholders about their concerns, the evolving status of the eruptions, and the uncertain prognosis of the flow’s advance and extent. The dialogue was essential for HVO staff to describe their observations and insights about the lava flow’s behavior and to gain credibility with the community during the crisis. This experience suggests that personal engagement with people at risk from future lava flows in Hawai‘i and elsewhere in the world will remain a crucial part of an eruption response, even with greater capability to disseminate warnings and information digitally via the Internet.

Hawaii

Compressional and shear-wave velocity versus depth relations for common rock types in northern California

This article presents new empirical compressional and shear-wave velocity (Vp and Vs) versus depth relationships for the most common rock types in northern California. Vp versus depth relations were developed from borehole, laboratory, seismic refraction and tomography, and density measurements, and were converted to Vs versus depth relations using new empirical relations between Vp and Vs. The relations proposed here account for increasing overburden pressure but not for variations in other factors that can influence velocity over short distance scales, such as lithology, consolidation, induration, porosity, and stratigraphic age. Standard deviations of the misfits predicted by these relations thus provide a measure of the importance of the variability in Vp and Vs caused by these other factors. Because gabbros, greenstones, basalts, and other mafic rocks have a different Vp and Vs relationship than sedimentary and granitic rocks, the differences in Vs between these rock types at depths below 6 or 7 km are generally small. The new relations were used to derive the 2005 U.S. Geological Survey seismic velocity model for northern California employed in the broadband strong motion simulations of the 1989 Loma Prieta and 1906 San Francisco earthquakes; initial tests of the model indicate that the Vp model generally compares favorably to regional seismic tomography models but that the Vp and Vs values proposed for the Franciscan Complex may be about 5% too high.

Conference Paper

The effects of summer flow augmentation on the migratory behavior and survival of juvenile Snake River fall Chinook salmon. Annual report 2003

This report summarizes results of research activities conducted in 2002 and years previous to aid in the management and recovery of fall chinook salmon Oncorhynchus tshawytscha in the Columbia River basin. The report is divided into self-standing chapters. For detailed summaries, we refer the reader to the abstracts given on the second page of each chapter. The Annual Reporting section includes information provided to fishery managers in-season and post-season, and it contains a detailed summary of life history and survival statistics on wild Snake River fall chinook salmon juveniles for the years 1992-2002. Peer-review publication remains a high priority of this research project, and it insures that our work meets high scientific standards. The Bibliography of Published Journal Articles section provides citations for peer-reviewed papers coauthored by personnel of project 199102900 that were written or published from 1998 to 2003.

Report