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USGS2019

Age and growth of stocked juvenile Shoal Bass in a tailwater: Environmental variation and accuracy of daily age estimates

Otolith microanalysis is often used to assess population age structure and growth of fishes during their early stages. Shoal Bass Micropterus cataractae is a recently described species of conservation concern and little is known regarding factors affecting their recruitment. In 2004, Georgia Department of Natural Resources (GADNR) and the US National Park Service (NPS) stocked Shoal Bass marked with oxytetracycline (OTC) in the Chattahoochee River near Atlanta, Georgia in an effort to restore this population, creating known-age fish to examine the effect of environment on daily age accuracy. We obtained samples of stocked juvenile (<150 mm) Shoal Bass from standard monitoring that occurred approximately 30–60 days after stocking in the Chattahoochee River to 1) validate daily rings for estimating age, hatch dates, and growth rates for stocked age-0 Shoal Bass, and 2) evaluate the effect of habitat (location) on age bias. Shoal Bass otoliths were examined for OTC marks and daily rings were counted in reference to OTC marks to assess age estimation accuracy. Age estimation accuracy ranged from -2 to -25 days and was influenced by the environment where Shoal Bass were captured, with greater inaccuracy in colder water temperatures. Fish collected from locations with colder temperatures displayed closer spacing of daily rings, potentially leading to greater underestimation of age. Growth rates of stocked Shoal Bass, corrected for age estimation error, ranged from 0.5 mm/day to 0.8 mm/day. This study demonstrates the effect of environmental variability on age inaccuracy and subsequent interpretation of results. Incorporating methods to assess age estimation accuracy is needed to understand interspecific differences in recruitment among black bass species in the variety of natural and human-modified environments they inhabit.

Georgia↗

USGS2007

Investigating the Environmental Effects of Agriculture Practices on Natural Resources: Scientific Contributions of the U.S. Geological Survey to Enhance the Management of Agricultural Landscapes

The U.S. Geological Survey (USGS) enhances and protects the quality of life in the United States by advancing scientific knowledge to facilitate effective management of hydrologic, biologic, and geologic resources. Results of selected USGS research and monitoring projects in agricultural landscapes are presented in this Fact Sheet. Significant environmental and social issues associated with agricultural production include changes in the hydrologic cycle; introduction of toxic chemicals, nutrients, and pathogens; reduction and alteration of wildlife habitats; and invasive species. Understanding environmental consequences of agricultural production is critical to minimize unintended environmental consequences. The preservation and enhancement of our natural resources can be achieved by measuring the success of improved management practices and by adjusting conservation policies as needed to ensure long-term protection.

Fact Sheet↗

USGS2014

A reconnaissance spatial and temporal assessment of methane and inorganic constituents in groundwater in bedrock aquifers, Pike County, Pennsylvania, 2012-13

Pike County in northeastern Pennsylvania is underlain by the Devonian-age Marcellus Shale and other shales, formations that have potential for natural gas development. During 2012–13, the U.S. Geological Survey in cooperation with the Pike County Conservation District conducted a reconnaissance study to assess baseline shallow groundwater quality in bedrock aquifers prior to possible shale-gas development in the county. For the spatial component of the assessment, 20 wells were sampled in summer 2012 to provide data on the occurrence of methane and other aspects of existing groundwater quality throughout the county, including concentrations of inorganic constituents commonly present at low levels in shallow, fresh groundwater but elevated in brines. For the temporal component of the assessment, 4 of the 20 wells sampled in summer 2012 were sampled monthly from July 2012 through June 2013 to provide data on seasonal variability in groundwater quality. All water samples were analyzed for major ions, nutrients, selected inorganic trace constituents (including metals and other elements), stable isotopes of water, radon-222, gross alpha- and gross beta-particle activity, dissolved gases (methane, ethane, and ethene), and, if possible, isotopic composition of methane. Additional analyses for boron and strontium isotopes, age-dating of water, and radium-226 were done on water samples collected from six wells in June 2013. Results of the summer 2012 sampling show that water from 16 (80 percent) of 20 wells had detectable concentrations of methane, but concentrations were less than 0.1 milligram per liter (mg/L) in most well-water samples; only two well-water samples had concentrations greater than 1 mg/L. The groundwater with elevated methane also had a chemical composition that differed in some respects (pH, selected major ions, and inorganic trace constituents) from groundwater with low methane concentrations. The two well-water samples with the highest methane concentrations (about 3.7 and 5.8 mg/L) also had the highest pH values (8.7 and 8.3, respectively) and the highest concentrations of sodium, lithium, boron, fluoride, and bromide. Elevated concentrations of some other constituents, such as barium, strontium, and chloride, were not limited to well-water samples with elevated methane, although the two samples with elevated methane also had among the highest concentrations of these constituents. One sample with elevated methane concentrations also had elevated arsenic concentrations, with the arsenic concentration of 30 micrograms per liter (μg/L) exceeding the drinking-water standard of 10 µg/L for arsenic. No other sample from the 20 wells sampled in summer 2012 had concentrations of constituents that exceeded any established primary drinking-water standards. However, radon-222 activities ranging up to 4,500 picocuries per liter (pCi/L) exceeded the proposed drinking-water standard of 300 pCi/L in 85 percent of the 20 well-water samples. The isotopic composition methane in the two high-methane samples (δC CH4 values of -64.55 and -64.41 per mil and δD CH4 values of -216.9 and -201.8 per mil, respectively) indicates a predominantly microbial source for the methane formed by a carbon dioxide reduction process. The stable isotopic composition of water (δD H20 and δ 18 O H20 ) in samples from all 20 wells falls on the local meteoric line, indicating water in the wells was of relatively recent meteoric origin (modern precipitation), including samples with elevated methane concentrations. Analytical results for 4 of the 20 wells sampled monthly for 1 year ending June 2013 in order to assess temporal variability in groundwater quality show that concentrations of major ions generally varied by less than 20 percent, with most differences less than 4 mg/L. Concentrations of methane varied by less than 1 μg/L (0.001 mg/L) in samples from three wells with low methane and by as much as 1 mg/L (1,000 μg/L) in samples from one well with relatively high methane. The isotopic composition of methane in the one well with relatively high methane varied slightly in the monthly samples, ranging from about -64.5 to -64.8 per mil for δ 13 C CH4 and from about -217 to -228 per mil for δD CH4 . The δ 13 C values for dissolved inorganic carbon (DIC) in water from this well were consistent with microbial methane formation by carbon dioxide reduction (drift-type methane) and varied little in the temporal samples, ranging from -10.5 to -10.1 per mil. Additional analyses of samples collected in late June 2013 from six wells with a range of methane and trace constituent concentrations provided baseline data on strontium and boron isotopic compositions ( 87 Sr/ 86 Sr ratios and δ 11 B, respectively) that potentially may be used to differentiate among sources of these constituents. The strontium and boron isotopic composition determined in the six shallow Pike County groundwater samples had 87 Sr/ 86 Sr ratios of 0.71426 to 0.71531 and δ 11 B values of 11.7 to 27.0 per mil, which differ from those reported for brines in Devonian-age formations in Pennsylvania. The June 2013 samples were also analyzed for radium-226 and age-dating dissolved gases. Activities of radium-226 ranged from 0.041 to 0.29 pCi/L in water samples from the six wells and were less than the drinking-water standard of 5 pCi/L for combined radium-226 and radium-228. Age-dating of groundwater using a method based on the presence of anthropogenic gases (chlorofluorocarbons and sulfur hexafluoride) released into the atmosphere yielded estimated recharge dates for water from these six wells that ranged from the 1940s to early 2000s. The oldest water was in samples from wells that had the highest methane concentrations and the youngest water was in samples from a continuously pumped 300-foot deep production well.

Pennsylvania↗

USGS2015

Evaluation of mean-monthly streamflow-regression equations for Colorado, 2014

The U.S. Geological Survey, in cooperation with the Colorado Water Conservation Board, evaluated the predictive uncertainty of mean-monthly streamflow-regression equations representative of natural streamflow conditions in Colorado. This study evaluates the predictive uncertainty of mean-monthly streamflow-regression equations developed in a 2009 U.S. Geological Survey study using streamflow data collected over the entire period of record at each streamgage through calendar year 2013. The study area for this report is limited to the Mountain, Northwest, Rio Grande, and Southwest hydrologic regions of Colorado. Data collected from the beginning of the period of record through calendar year 2013 were used to evaluate the mean-monthly streamflow equations using the same basin characteristics as in the 2009 study. U.S. Geological Survey and Colorado Division of Water Resources streamgages with at least 10 years of streamflow record and identified as representative of natural streamflow conditions were selected for this study. During the streamgage selection process, a total of 432 streamgages, composed of 278 from the 2009 study and 154 new streamgages, were identified. The updated standard error of prediction and adjusted coefficient of determination values that correspond to the mean-monthly streamflow equations developed in the 2009 study are in close agreement with the results of this study. The old streamgages performed slightly better than the new streamgages, with approximately 88 and 85 percent of the data within the prediction intervals, respectively. This result was expected because the streamgages used to develop the regression equations should yield a better performance than the new streamgages. For all hydrologic regions, approximately 87 percent of the data are within the 95-percent prediction intervals. The explanation for why fewer than 95 percent of the data are within the prediction intervals is that the data do not conform perfectly to the regression assumptions required to accurately estimate performance metrics. The equations for the Rio Grande hydrologic region had the best fit with the parametric prediction-interval assumptions, with approximately 91.8 percent of the data within the prediction interval (average 12 months). The Mountain, Northwest, and Southwest hydrologic regions had 87.8, 84.9, and 83.5 percent of the data contained within the prediction interval, respectively. Monthly adjusted coefficient of determination values were computed and have the same general pattern for all four hydrologic regions. The largest values usually occur in March or April, and the lowest values usually occur in August or September. Only the Rio Grande hydrologic region deviates from this seasonal pattern, exhibiting a decrease in adjusted coefficient of determination values in August and September, with the lowest values occurring in the winter months (December, January, and February). Generally, the adjusted coefficient of determination values for this report are just slightly less (0.76 compared to 0.79) than the values computed in the 2009 study. The similarity of values, even when tested with data not used to originally develop the mean-monthly streamflow-regression equations, provides confidence that the predictive uncertainty of mean-monthly regression equations in the 2009 study are accurate. The fact that the results for the two datasets are very similar provides assurance that when these equations are applied to locations not used to develop the equations, the standard error of prediction and adjusted-coefficient of determination error metrics should be similar to those established in the 2009 study for locations with natural streamflow. The median absolute differences between the observed and computed mean-monthly streamflow for Mountain, Northwest, and Southwest hydrologic regions are fairly uniform throughout the year, with the exception of late summer and early fall (July, August, and September), when each hydrologic region exhibits a substantial increase in median absolute percent difference. The greatest difference occurs in the Northwest hydrologic region, and the smallest difference occurs in the Mountain hydrologic region. The Rio Grande hydrologic region shows seasonal variation in median absolute percent difference with March, April, August, and September having a median absolute difference near or below 40 percent, and the remaining months of the year having a median absolute difference near or above 50 percent. In the Mountain, Northwest, and Southwest hydrologic regions, the mean-monthly streamflow equations perform the best during spring (March, April, and May). However, in the Rio Grande hydrologic region, the mean-monthly streamflow equations perform the best during late summer and early fall (August and September).

Arizona, Colorado, New Mexico, Utah, Wyoming↗

USGS2006

Sex determination of Pohnpei Micronesian kingfishers using morphological and molecular genetic techniques

Conservation-oriented studies of Micronesian Kingfishers (Todiramphus cinnamominus) have been hindered by a lack of basic natural history information, despite the status of the Guam subspecies (T. c. cinnamominus) as one of the most endangered species in the world. We used tissue samples and morphometric measures from museum specimens and wild-captured Pohnpei Micronesian Kingfishers (T. c. reichenbachii) to develop methods for sex determination. We present a modified molecular protocol and a discriminant function that yields the probability that a particular individual is male or female. Our results revealed that females were significantly larger than males, and the discriminant function correctly predicted sex in 73% (30/41) of the individuals. The sex of 86% (18/21) of individuals was correctly assigned when a moderate reliability threshold was set. Sex determination using molecular genetic techniques was more reliable than methods based on morphology. Our results will facilitate recovery efforts for the critically endangered Guam Micronesian Kingfisher and provide a basis for sex determination in the 11 other endangered congeners in the Pacific Basin.

Journal of Field Ornithology↗

USGS2020

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2019

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Fish Community Goals and Objectives for Lake Erie (Ryan et al. 2003). This report is responsive to U.S. Geological Survey (USGS) obligations via Memorandum of Understanding (MOU) with the Great Lakes Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies in 2019 were to monitor long-term changes in the fish community and population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations of this agreement were sustained investigations of native percids, forage (prey) fish populations, and Lake Trout. Our 2019 deepwater program operations began in April and concluded in December, and utilized trawl, gillnet, hydroacoustic, lower trophic sampling, and telemetry methods. This work resulted in 88 bottom trawls covering 65 ha of lake-bottom and catching 24,140 fish totaling 3,622 kg during three separate trawl surveys in the West and Central basins of Lake Erie. Overnight gillnet sets (n=44) for cold water species were performed at 42 unique locations in the West and East basins of Lake Erie. A total of 8.0 km of gillnet was deployed during these surveys, which caught 286 fish, 114 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. USGS hydroacoustic surveys in 2019 produced 240 km of transects, and lower trophic sampling provided data from zooplankton samples (n=21) and water quality profiles (n=21) to populate a database maintained by the Ontario Ministry of Natural Resources and Forestry (OMNRF), Ohio Division of Natural Resources (ODNR), Michigan Division of Natural Resources (MDNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of the Great Lakes Acoustic Telemetry Observation System (GLATOS) throughout all three Lake Erie sub-basins, supporting multiple coordinated telemetry investigations. In 2019, Lake Trout investigations included annual gill net surveys and acoustic telemetry of spawning migration and habitat use in coordination with OMNRF, NYSDEC, and PFBC. Results from Lake Trout investigations were reported in the Coldwater Task Group annual report to the Great Lakes Fishery Commission (GLFC) and the CLC (Coldwater Task Group 2020). Likewise, interagency forage fish assessments conducted with hydroacoustics were summarized and reported in the Forage Task Group annual report (Forage Task Group 2020). This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2019 during June and September. The survey design provided temporal and spatial coverage that did not exist in the historic interagency trawl database, and thus complemented the August ODNR-OMNRF effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and are accessible for download (https://doi.org/10.5066/P9LL6YOR, Keretz et al. 2020). Annual survey data are added to these sources as the data become available.

Lake Erie↗

USGS2025

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2024

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Lake Erie’s Fish Community Objectives (FCOs) developed in 2020 (Francis et al. 2020). The 2024 U.S. Geological Survey (USGS) Lake Erie Biological Station Annual Report is responsive to these FCOs and the USGS obligations via a Memorandum of Understanding (MOU 2017) with the Great Lakes Fishery Commission (GLFC) Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies were to monitor long-term changes in the fish community and track population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations were sustained investigations of native percids, prey fish populations, and Lake Trout. All work was conducted as part of the Deepwater Science Program under the authority of the Great Lakes Fishery Research Authorization Act of 2019 (16 USC §941h). The USGS 2024 Deepwater Science Program fieldwork began in Lake Erie in March and concluded in December, using trawl, gill net, hydroacoustic, lower trophic sampling devices, and telemetry methods. This work resulted in 44 bottom trawls covering 41 ha of lake bottom and catching 48,936 fish totaling 995 kg in the West Basin of Lake Erie, with detailed results described below. Overnight gill net sets (n=25) for coldwater species were performed in the East Basin of Lake Erie. A total of 8 km of gillnet was deployed during these surveys, which caught 106 fish, 92 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. Results from coldwater species assessments will be reported in the Coldwater Task Group report to the GLFC and the CLC (CTG 2025). These reports are used to inform Lake Trout stocking decisions and direct lamprey control measures (16 USC §939a). USGS hydroacoustic sampling included twenty-six 5-km transects (130 km total) in the Central Basin as part of a collaborative lake-wide survey with details and results reported by the Forage Task Group (FTG 2025). Lower trophic sampling provided data from zooplankton samples (n=12) and water quality profiles (n=12) to populate a database maintained by the Michigan Department of Natural Resources (MDNR), Ontario Ministry of Natural Resources (OMNR), Ohio Department of Natural Resources (ODNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of Great Lakes Acoustic Telemetry Observation System (GLATOS) infrastructure throughout all three Lake Erie basins and tributaries, supporting multiple coordinated telemetry investigations. This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2024 during June and September. The survey design compliments the August ODNR- OMNRF effort by reinforcing stock assessments with more robust data. Analyses herein evaluated trends in total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity, and community structure. Data from this effort are accessible for download (Keretz et al. 2025)

Lake Erie↗

USGS2009

An estimate of the historic population size of adult pallid sturgeon in the upper Missouri river basin, Montana and North Dakota

Juvenile pallid sturgeon Scaphirhynchus albus raised in hatcheries and stocked in the wild are used to augment critically imperiled populations of this federally endangered species in the United States. For pallid sturgeon in recovery priority management area 2 (RPMA 2) of the Missouri River and lower Yellowstone River where natural recruitment has not occurred for decades, restoration programs aim to stock an annual minimum of 9000 juvenile pallid sturgeon for 20 years to re-establish a minimum population of 1700 adults. However, establishment of this target was based on general guidelines for maintaining the genetic integrity of populations rather than pallid sturgeon-specific demographic information because data on the historical population size was lacking. In this study, information from a recent population estimate (158 wild adults in 2004, 95% confidence interval 129-193 adults) and an empirically derived adult mortality rate (5%) was used in a cohort population model to back-estimate the historic abundance of adult pallid sturgeon in RPMA 2. Three back-estimation age models were developed, and assumed that adults alive during 2004 were 30-, 40-, or 50-years old. Based on these age assumptions, population sizes [??95% confidence intervals; (CI)] were back-estimated to 1989, 1979, and 1969 to approximate size of the population when individuals would have been sexually mature (15 years old) and capable of spawning. Back-estimations yielded predictions of 344 adults in 1989 (95% CI 281-420), 577 adults in 1979 (95% CI 471-704), and 968 adults in 1969 (95% CI 790-1182) for the 30-, 40-, and 50-year age models, respectively. Although several assumptions are inherent in the back-estimation models, results suggest the juvenile stocking program for pallid sturgeon will likely re-establish an adult population that equals in the short-term and exceeds in the long-term the predicted population numbers that occurred during past decades in RPMA 2. However, re-establishment of a large population in RPMA 2 that exceeds populations present 40+ years ago should be considered conservatively, as this strategy will increase the number of reproductive adults and thereby increase the likelihood for natural recruitment in this recruitment-limited system. ?? 2009 Blackwell Verlag GmbH.

Conference Paper↗

USGS2014

Radar analysis of fall bird migration stopover sites in the northeastern U.S.

The national network of weather surveillance radars (WSR-88D) detects flying birds and is a useful remote-sensing tool for ornithological study. We used data collected during fall 2008 and 2009 by 16 WSR-88D radars in the northeastern U.S. to quantify the spatial distribution of landbirds during migratory stopover. We geo-referenced estimates based on radar reflectivity, of the density of migrants aloft at their abrupt evening exodus from daytime stopover sites, to the approximate locations from which they emerged. We classified bird stopover use by the magnitude and variation of radar reflectivity across nights; areas were considered “important” stopover sites for conservation if bird density was consistently high. We developed statistical models that predict potentially important stopover sites across the region, based on land cover, ground elevation, and geographic location. Large areas of regionally important stopover sites were located along the coastlines of Long Island Sound, throughout the Delmarva Peninsula, in areas surrounding Baltimore and Washington, along the western edge of the Adirondack Mountains, and within the Appalachian Mountains of southwestern Virginia and West Virginia. Locally important stopover sites generally were associated with deciduous forests embedded within landscapes dominated by developed or agricultural lands, or near the shores of major water bodies. Preserving or enhancing patches of natural habitat, particularly deciduous forests, in developed or agricultural landscapes and along major coastlines could be a priority for conservation plans addressing the stopover requirements of migratory landbirds in the northeastern U.S. Our maps of important stopover sites can be used to focus conservation efforts and can serve as a sampling frame for fieldwork to validate radar observations or for ecological studies of landbirds on migratory stopover.

The Condor↗

USGS2009

The needs of salmon and steelhead in balancing their conservation and use

Over the past 100 years, Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss populations in the Pacific Northwest have experienced dramatic declines as a result of human population growth and associated development of the region's natural resources. Any strategy to reverse those declines will depend on achieving consensus among a diverse group of stakeholders willing to (1) restore damaged habitats and watersheds; (2) consider the biological needs of salmonid fishes; and (3) understand, conserve, and manage existing levels of biodiversity within an ecosystem context. The objective of this chapter is to review and summarize the needs of Pacific salmon and steelhead trout from perspectives that promote their sustainability and perpetuity, and, within that context, provide a framework, for the development of a sustainable fisheries strategy. Although volumes of information are available on the life histories and habitat requirements of Pacific salmonids, new concepts have begun to address the importance of habitat complexity, genetic diversity among locally adapted populations, and the need for appropriate units of conservation. Habitat variability and complexity are the templates that produce diverse, locally adapted populations of Pacific salmon and steelhead trout. Molded by conditions in the environments they colonized, salmon and steelhead have unique adaptations they may have taken hundred i?? perhaps thousands i?? of years to evolve. Any strategy to reverse the declines of salmon and steelhead must focus on conserving both current levels of genetic diversity as well as restoration and maintenance of habitats compatible with the specific needs of individual populations. An argument can be made that we know enough already about the needs of our salmon and steelhead to allow us to make appropriate decisions. There is strong need to integrate what we know about local salmonid adaptations and habitat needs with conservation and management strategies that address the problems we have created. It may be possible to have healthy, sustainable salmonid populations coastwide if we do not wait too long to make up our minds.

Book chapter↗

USGS2017

Temporal changes in nitrogen and phosphorus concentrations with comparisons to conservation practices and agricultural activities in the Lower Grand River, Missouri and Iowa, and selected watersheds, 1969–2015

This report presents the results of a cooperative study by the U.S. Geological Survey and Missouri Department of Natural Resources to estimate total nitrogen (TN) and total phosphorus (TP) concentrations at monitoring sites within and near the Lower Grand River hydrological unit. The primary objectives of the study were to quantify temporal changes in TN and TP concentrations and compare those concentrations to conservation practices and agricultural activities. Despite increases in funding during 2011–15 for conservation practices in the Lower Grand River from the Mississippi River Basin Healthy Watersheds Initiative, decreases in flow-normalized TN and TP concentrations during this time at the long-term Grand River site were less than at other long-term sites, which did not receive funding from the Mississippi River Basin Healthy Watersheds Initiative. The relative differences in the magnitude of flow-normalized TN and TP concentrations among long-term sites are directly related to the amount of agricultural land use within the watershed. Significant relations were determined between nitrogen from cattle manure and flow-normalized TN concentrations at selected long-term sites, indicating livestock manure may be a substantial source of nitrogen within the selected long-term site watersheds. Relations between flow-normalized TN and TP concentrations with Conservation Reserve Program acres and with nitrogen and phosphorus from commercial fertilizer indicate that changes in these factors alone did not have a substantial effect on stream TN and TP concentrations; other landscape activities, runoff, within-bank nutrients that are suspended during higher streamflows, or a combination of these have had a greater effect on stream TN and TP concentrations; or there is a lag time that is obscuring relations. Temporal changes in flow-adjusted TN and TP concentrations were not substantial at Lower Grand River Mississippi River Basin Healthy Watersheds Initiative sites, indicating factors besides stream variability did not have substantial effects on TN and TP concentrations. Flow-weighted TN and TP concentrations at Lower Grand River Mississippi River Basin Healthy Watershed Initiative sites increase with increasing streamflow, which indicates runoff, within-bank nutrients that are suspended during higher streamflows, or both, have more effect on stream TN and TP concentrations than consistent point sources or groundwater sources. Timing of TN and TP concentration increases compared to streamflow increases indicate that nitrogen and phosphorus loads are more strongly related to streamflow than to a particular period of the year, indicating that runoff, within-bank nutrients that are suspended during higher streamflows, or both are a substantial source of nutrients regardless of timing.

Iowa, Missouri↗

USGS2014

A nuclear DNA perspective on delineating evolutionarily significant lineages in polyploids: the case of the endangered shortnose sturgeon ( Acipenser brevirostrum )

The shortnose sturgeon, Acipenser brevirostrum , oft considered a phylogenetic relic, is listed as an “endangered species threatened with extinction” in the US and “Vulnerable” on the IUCN Red List. Effective conservation of A. brevirostrum depends on understanding its diversity and evolutionary processes, yet challenges associated with the polyploid nature of its nuclear genome have heretofore limited population genetic analysis to maternally inherited haploid characters. We developed a suite of polysomic microsatellite DNA markers and characterized a sample of 561 shortnose sturgeon collected from major extant populations along the North American Atlantic coast. The 181 alleles observed at 11 loci were scored as binary loci and the data were subjected to multivariate ordination, Bayesian clustering, hierarchical partitioning of variance, and among-population distance metric tests. The methods uncovered moderately high levels of gene diversity suggesting population structuring across and within three metapopulations (Northeast, Mid-Atlantic, and Southeast) that encompass seven demographically discrete and evolutionarily distinct lineages. The predicted groups are consistent with previously described behavioral patterns, especially dispersal and migration, supporting the interpretation that A. brevirostrum exhibit adaptive differences based on watershed. Combined with results of prior genetic (mitochondrial DNA) and behavioral studies, the current work suggests that dispersal is an important factor in maintaining genetic diversity in A. brevirostrum and that the basic unit for conservation management is arguably the local population.

PLoS ONE↗

USGS2021

Impacts of a non-indigenous ecosystem engineer, the American beaver (Castor canadensis), in a biodiversity hotspot

Non-native species having high per capita impacts in invaded communities are those that modulate resource availability and alter disturbance regimes in ways that are biologically incompatible with the native biota. In areas where it has been introduced by humans, American beaver ( Castor canadensis ) is an iconic example of such species due to its capacity to alter trophic dynamics of entire ecosystems and create new invasional pathways for other non-native species. The species is problematic in several watersheds within the Southern California-Northern Baja California Coast Ecoregion, a recognized hotspot of biodiversity, due to its ability to modify habitat in ways that favor invasive predators and competitors over the region's native species and habitat. Beaver was deliberately introduced across California in the mid-1900s and generally accepted as non-native to the region up to the early 2000s; however, articles promoting the idea that beaver may be a natural resident have gained traction in recent years, due in large part to the species' charismatic nature rather than by presentation of sound evidence. Here, we discuss the problems associated with beaver disturbance and its effects on conserving the region's native fauna and flora. We refute arguments underlying the claim that beaver is native to the region, and review paleontological, zooarchaeological, and historical survey data from renowned field biologists and naturalists over the past ~160 years to show that no evidence exists that beaver arrived by any means other than deliberate human introduction. Managing this ecosystem engineer has potential to reduce the richness and abundance of other non-native species because the novel, engineered habitat now supporting these species would diminish in beaver-occupied watersheds. At the same time, hydrologic functionality would shift toward more natural, ephemeral conditions that favor the regions' native species while suppressing the dominance of the most insidious invaders.

California↗

USGS1990

The quantification of instream flow rights to water

Energy development of all types continues to grow in the Rocky Mountain Region of the western United States. Federal resource managers increasingly need to balance energy demands, their effects on the natural and human landscape, and public perceptions towards these issues. The Western Energy Citation Clearinghouse (WECC v.1.0), part of a suite of data and information management tools developed and managed by the Wyoming Landscape Conservation Initiative (WLCI), provides resource managers with a searchable online database of citations that covers a broad spectrum of energy and landscape related topics relevant to resource managers, such as energy sources, natural and human landscape effects, and new research, methods and models. Based on the 2011 USGS Open-file Report "Abbreviated bibliography on energy development" (Montag, et al. 2011), WECC is an extensive collection of energy-related citations, as well as categorized lists of additional online resources related to oil and gas development, best practices, energy companies and Federal agencies. WECC incorporates the powerful web services of Sciencebase 2.0, the enterprise data and information platform for USGS scientists and partners, to provide secure, role-based data management features. For example, public/unauthenticated WECC users have full search and read access to the entire energy citation collection, while authenticated WLCI data stewards can manage WECC's citation collection using Sciencebase data management forms.

Book↗

USGS2010

Can lowland dry forests represent a refuge from avian malaria for native Hawaiian birds?

Hawaii's native birds have become increasingly threatened over the past century. Introduced mosquito borne diseases such as avian malaria may be responsible for the near absence of endemic Hawaiian forest birds in low-elevation habitats. The recent recognition that some native Hawaiian forest birds may be repopulating moist lowland habitats as a result of evolved resistance to this disease has increased the conservation value of these areas. Here, we investigate whether remnant low elevation dry forests on Hawaii Island provide natural 'refuges' from mosquito-transmitted malaria by nature of their low rainfall and absence of suitable natural sources of water for mosquito breeding. Unlike lowland wet forests where high rates of disease transmission may be selecting for disease resistance, lowland dry forests may provide some refuge for native forest birds without natural resistance to malaria. We mistnetted forest birds in two lowland dry forests and tested all native birds by microscopy and serology for avian malaria caused by the Plasmodium relictum parasite. We also conducted surveys for standing water and mosquito larvae. Overall prevalence of infections with Plasmodium relictum in the Hawaii Amakihi Hemignathus virens virens was 15%. Most infected birds had lowlevel parasitemias, suggesting chronic infections. Although avian malaria is present in these lowland dry forest Amakihi populations, infection rates are significantly lower than in wet forest populations at similar elevations. Sources of breeding mosquitoes in these forests appeared to be largely anthropogenic; thus, there is potential to manage dry forests as mosquito-free habitat for Hawaii Amakihi and other Hawaiian forest birds.

Hawai'i↗

USGS1963

Ground-water contamination and legal controls in Michigan

The great importance of the fresh ground-water resources of Michigan is evident because 90 percent of the rural and about 70 percent of the total population of the State exclusive of the Detroit metropolitan area are supplied from underground sources. The water-supply and public-health problems that have been caused by some cases of ground-water contamination in the State illustrate the necessity of protecting this vital resource. Manmade and natural contaminants, including many types of chemical and organic matter, have entered many of the numerous aquifers of the State. Aquifers have been contaminated by waste-laden liquids percolating from the surface or from the zone of aeration and by direct injection to the aquifer itself. Industrial and domestic wastes, septic tanks, leaking sewers, flood waters or other poor quality surface waters, mine waters, solids stored or spread at the surface, and even airborne wastes all have been sources of ground-water contamination in Michigan. In addition, naturally occurring saline waters have been induced into other aquifers by overpumping or unrestricted flow from artesian wells, possibly by dewatering operations, and by the deepening of surface stream channels. Vertical migration of saline waters through open holes from formations underlying various important aquifers also has spoiled some of the fresh ground waters in the State. In spite of the contamination that has occurred, however, the total amount of ground water that has been spoiled is only a small part of the total resource. Neither is the contamination so widespread as that of the surface streams of Michigan. Overall legal authority to control most types of ground-water contamination in the State has been assigned by the Michigan Legislature to the Water Resources Commission, although the Department of Conservation and the Health Department also exercise important water-pollution control functions. The Michigan Supreme Court, in an important case upholding the power of the Water Resources Commission to control pollution of ground water, in effect has introduced the doctrine of reasonable use into the law of the State. Excluding controls administered by the Department of Conservation on activities of the oil and gas industry, however, legal controls have not been used abate intrusion of natural saline waters into fresh-water aquifers in response to pumping and other manmade changes in the hydrologic regimen.

Michigan↗

USGS1998

Walden Pond, Massachusetts: Environmental setting and current investigations

Introduction Walden Pond, in Concord, Massachusetts, is famous among lakes because of its unique social history. Walden was the setting for American naturalist Henry David Thoreau's well-known essay 'Walden; or, Life in the Woods,' first published in 1854. Thoreau lived and wrote at Walden Pond from July 1845 to September 1847. In 'Walden,' Thoreau combined highly admired writing on Transcendental philosophy with pioneering observations of aquatic ecology and physical aspects of limnology, the study of lakes. Because Thoreau also defended so effectively the value of living close to nature in the Walden woods, the pond is considered by many to be the birthplace of the American conservation movement. Visitors come from all over the world to the pond, which has been designated a National Historic Landmark, and its fame has resulted in a major fund drive to preserve the surrounding woods. Walden Pond has no surfacewater inflow or outflow, and much of its ground-water contributing area likely is preserved within the Walden Pond Reservation area (fig. 1). Only 15 miles from Boston, the pond is unusually clear and pristine for an urban-area lake. However, point sources of nutrients near the pond, and a large annual visitor attendance, concentrated during the summer when the swimming beach (fig. 2) is open, may contribute a nutrient load sufficient to change the pond environment. The occurrence of nuisance algal species, a recent beach closing, and an awareness of water-quality problems suffered by other ponds in the region raise concerns about the risk of ecological change at Walden Pond. Despite the role of Walden Pond as a cultural and environmental icon, little is known about the pond's ecological features, such as its internal nutrient cycling or the structure of its food web, nor have consistent measurements been made to determine whether these features are changing or are stable. Production rates of aquatic plants in lakes and ponds naturally undergo a slow increase as plant nutrients, organic matter, and soil are leached and eroded from the surrounding watershed. This process is known as eutrophication. The term 'cultural eutrophication' refers to an accelerated form of the natural process in which extra soil and nutrients are derived from people's use of fertilizer, rerouting of surface drainage, and disposal of domestic and industrial waste. Cultural eutrophication can lead to excessive growth of aquatic plants, pond filling by decayed plants and eroded soils, reduced water clarity, and depletion of dissolved oxygen in deep water with subsequent loss of cold-water fish habitat. In order to document the longterm ecological health of Walden Pond, the U.S. Geological Survey (USGS), working in cooperation with the Massachusetts Department of Environmental Management (MDEM), is investigating factors that could contribute to cultural eutrophication of Walden. Through measurements of mass balance of nutrients and oxygen in the pond's deep water, the investigation will establish a baseline data set on Walden's trophic state, which is a measure of the pond's ability to support plant growth. The baseline data will be used to detect trends and give early warning of trophic changes or trophic response to pond remediation projects. This Fact Sheet provides background information on the environmental setting, limnological features, and cultural eutrophication of Walden Pond, and describes the joint USGS/MDEM study.

Massachusetts↗

USGS2007

Disentangling the role of hybridization in the evolution of the endangered Arizona cliffrose (Purshia subintegra; Rosaceae): A molecular and morphological analysis

Hybridization may threaten the conservation status of rare species through genetic assimilation and may confound the ability to distinguish among taxa. We studied these issues in an endangered shrub, Purshia subintegra (Rosaceae), known from four populations growing on limestone outcrops in central Arizona (USA). Using amplified fragment length polymorphisms (AFLP) and the Bayesian clustering algorithm implemented in STRUCTURE, we identified three distinct genetic lineages among Arizona Purshia subintegra and P. stansburiana. An initial split divided San Carlos Basin P. subintegra (considered P. pinkavae by Schaack) from northern P. stansburiana populations (FST = 0.394). A subsequent split separated northern P. stansburiana from two P. subintegra populations at Horseshoe Lake and Burro Creek (FST = 0.207), which comprised a nearly perfect admixture of the two lineages identified in the initial analysis. In the Verde River Valley P. subintegra is sympatric with P. stansburiana and exhibited an average 27% P. stansburiana genes for 5 of 6 stands analyzed, indicating ongoing hybridization and backcrossing with P. subintegra. Individuals carrying >90% P. subintegra markers are identifiable 68% of the time based on morphology, with leaf lobing, leaf size, and leaf length acting as the most reliable indicators of taxonomic status. However, the genetic and morphological distance correlation among individuals was low (r = 0.17, P = 0.0002), indicating that morphology cannot always accurately predict genetic admixture or taxonomy. Overall, our study confirmed the genetic distinctiveness of the San Carlos Basin population, an ancient natural hybrid origin of P. subintegra, and the presence of a hybrid swarm in the Verde Valley, whose conservation value may lie in its heightened genetic diversity. ?? 2007 Springer Science+Business Media B.V.

Conservation Genetics↗