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USGS1995

Acidic deposition ("acid rain")

Acidic deposition, or "acid rain," describes any form of precipitation, including rain, snow, and fog, with a pH of 5.5 or below (Note: pH values below 7 are acidic; vinegar has a pH of 3). It often results when the acidity of normal precipitation is increased by sulfates and nitrates that are emitted into the atmosphere from burning fossil fuels. This form of airborne contamination is considered harmful, both directly and indirectly, to a host of plant and animal species. Although acid rain can fall virtually anywhere, ecological damages in environmentally sensitive areas downwind of industrial and urban emissions are a major concern. This includes areas that have a reduced capacity to neutralize acid inputs because of low alkalinity soils and areas that contain species with a low tolerance to acid conditions. To determine the distribution of acidic deposition and evaluate its biological effects, research and monitoring are being conducted by the federal government with support from states, universities, and private industry. The national extent of the acid rain problem has been estimated by sampling water from 3,000 lakes and 500 streams (Irving 1991), representing more than 28,000 lakes and 56,000 stream reaches with a total of 200,000 km (125,000 mi). Some particularly sensitive areas, such as the Adirondack Mountain region, have been more intensively sampled and the biota examined in detail for effects from acidity. To identify trends in aquatic ecosystems, present and historical survey data on water chemistry and associated biota are compared. In lakes, the chemical and biological history and pH trends may be inferred or reconstructed in some cases by examining assemblages of fossil diatoms and aquatic invertebrates in the sediment layers. In terrestrial ecosystems, vegetation damage is surveyed and effects of acidic deposition to plants and animals are determined from laboratory and field exposure experiments. Natural variation in populations and the complex interactions between acidity and other ecosystem components make it difficult to extend many of the research findings to populations or communities. Acidity can also modify ecosystem processes such as decomposition and the flow of nutrients. Therefore, models are often used to predict such effects by combining information on individual species' effects, population distributions, and the patterns and amounts of acidic deposition.

Book chapter↗

USGS2017

Natural resource inventory and monitoring for Ulaan Taiga Specially Protected Areas—An assessment of needs and opportunities in northern Mongolia

Between 1997 and 2011, Mongolia established three specially protected areas in the north-central part of the country to protect various high-value resources. These areas are jointly referred to as the Ulaan Taiga Specially Protected Areas. In accordance with the goals of the draft general management plan, this report identifies options for initiating an inventory and monitoring program for the three protected areas. Together, the three areas comprise over 1.5 million hectares of mountainous terrain west of Lake Hovsgol and bordering the Darkhad Valley. The area supports numerous rare ungulates, endangered fish, and over 40 species of threatened plants. Illegal mining, illegal logging, and poaching pose the most immediate threats to resources. As a first step, a review of published literature would inform natural resource management at the Ulaan Taiga Specially Protected Areas because it would inform other inventories. Vegetation classification and mapping also would inform other inventory efforts because the process incorporates geographic analysis to identify environmental gradients, fine-scale sampling that captures species composition and structure, and landscape-scale results that represent the variety and extent of habitats for various organisms. Mapping using satellite imagery reduces the cost per hectare. Following a determination of existing knowledge, field surveys of vertebrates and vascular plants would serve to build species lists and fill in gaps in existing knowledge. For abiotic resources, a focus on monitoring air quality, evaluating and monitoring water quality, and assembling and storing weather data would provide information for correlating resource response status with changing environmental conditions. Finally, we identify datasets that, if incorporated into a geographic information system, would inform resource management. They include political boundaries, infrastructure, topography, surficial geology, hydrology, fire history, and soils. In terms of tracking high-value resources, vegetation monitoring at the plot scale would provide a basis for detecting change in such characteristics as plant species composition, vegetation structure, and productivity that are associated with landscape-scale factors such as climate change or biotic interactions. Continued population monitoring of rare ungulates, particularly argali or wild sheep ( Ovis ammon ), would provide information on how populations are responding to natural and anthropogenic stressors. Siberian taimen ( Hucho taimen ) also is an important monitoring target given ongoing threats of poaching and climate change.

Ulaan Taiga Specially Protected Areas↗

USGS2023

Increasing ocean wave energy observed in Earth’s seismic wavefield since the late 20th century

Ocean waves excite continuous globally observable seismic signals. We use data from 52 globally distributed seismographs to analyze the vertical component primary microseism wavefield at 14–20 s period between the late 1980s and August 2022. This signal is principally composed of Rayleigh waves generated by ocean wave seafloor tractions at less than several hundred meters depth, and is thus a proxy for near-coastal swell activity. Here we show that increasing seismic amplitudes at 3 σ significance occur at 41 (79%) and negative trends occur at 3 σ significance at eight (15%) sites. The greatest absolute increase occurs for the Antarctic Peninsula with respective acceleration amplitude and energy trends ( ± 3 σ ) of 0.037 ± 0.008 nm s −2 y −1 (0.36 ± 0.08% y −1 ) and 4.16 ± 1.07 nm 2 s −2 y −1 (0.58 ± 0.15% y −1 ), where percentage trends are relative to historical medians. The inferred global mean near-coastal ocean wave energy increase rate is 0.27 ± 0.03% y −1 for all data and is 0.35 ± 0.04% y −1 since 1 January 2000. Strongly correlated seismic amplitude station histories occur to beyond 50 ∘ of separation and show regional-to-global associations with El Niño and La Niña events.

Nature Communications↗

USGS2003

Projecting the success of plant restoration with population viability analysis

Conserving viable populations of plant species requires that they have high probabilities of long-term persistence within natural habitats, such as a chance of extinction in 100 years of less than 5% (Menges 1991, 1998; Brown 1994; Pavlik 1994; Chap. 1, this Vol.). For endangered and threatened species that have been severely reduces in range and whose habitats have been fragmented, important species conservation strategies may include augmenting existing populations or restoring new viable populations (Bowles and Whelan 1994; Chap. 2, this Vol.). Restoration objectives may include increasing population numbers to reduce extinction probability, deterministic manipulations to develop a staged cohort structure, or more complex restoration of a desired genetic structure to allow outcrossing or increase effective population size (DeMauro 1993, 1994; Bowles et al. 1993, 1998; Pavlik 1994; Knapp and Dyer 1998; Chap. 2, this Vol.). These efforts may require translocation of propagules from existing (in situ) populations, or from ex situ botanic gardens or seed storage facilities (Falk et al. 1996; Guerrant and Pavlik 1998; Chap. 2, this Vol.). Population viability analysis (PVA) can provide a critical foundation for plant restoration, as it models demographic projections used to evaluate the probability of population persistence and links plant life history with restoration strategies. It is unknown how well artificially created populations will meet demographic modeling requirements (e.g., due to artificial cohort transitions) and few, if any, PVAs have been applied to restorations. To guide application of PVA to restored populations and to illustrate potential difficulties, we examine effects of planting different life stages, model initial population sizes needed to achieve population viability, and compare demographic characteristics between natural and restored populations. We develop and compare plant population restoration viability analysis (PRVA) case studies of two plant species listed in the USA for which federal recovery planning calls for population restoration: Cirsium pitcheri , a short-lived semelparous herb, and Asclepias meadii , a long-lived iteroparous herb.

Book chapter↗

USGS2002

Flood pulsing in wetlands: Restoring the natural hydrological balance

The latest cutting-edge research on flood pulsing and wetland restoration in North America. Presenting the latest research from leaders in the field of restoration ecology, Flood Pulsing in Wetlands reflects the current movement to incorporate flood pulsing into wetland restoration efforts. Emphasizing how integral flood pulsing is to successful wetland restoration, the book's contributors provide descriptions of restoration projects across North America in which flood pulsing has been primarily used to restore beneficial hydrodynamic conditions to floodplain areas, and improve or save vegetation, wildlife, and terrain. Detailing the importance and applicability of recreating flood-pulsed conditions on floodplains for successful restoration, the first chapter introduces the concept of flood pulse and its unique role in wetland restoration. The following chapters detail the strategies and results of individual projects and the impact flood pulsing had on the projects' overall goals. Case studies detail the history of each region, such as the Southwest, including the Sonoran Desert communities and the Middle Rio Grande; the Missouri River in Montana; the Illinois River Valley; and the Southeast, including Brushy Lake, Arkansas. Also documented is the most famous case of flood pulsing used in the restoration of an entire landscape, the Kissimmee River project. Approaches used to restore specific plant and animal populations, the unique ecological concerns of each region, and the future outlook for each area are fully described. Extensive bibliographies for each chapter make Flood Pulsing in Wetlands: Restoring the Natural Hydrological Balance the essential reference for restoration ecologists, consultants in wetland restoration, government and restoration agency employees, land managers, ecologists, foresters, and geologists.

Book↗

USGS1998

Environmental impacts on the southern Florida coastal waters: A history of change in Florida Bay

Analyses of four cores located in the northern transitional, eastern, and central portions of Florida Bay reveal historical patterns of change in salinity and seagrass distribution. Salinity and the distribution of seagrass beds are two critical issues for the restoration of Florida Bay. The distribution of benthic fauna in Bob Allen 6A and Russell Bank 19B cores illustrates changes in environmental parameters prior to 1900. Natural fluctuations occur in salinity, but the amplitude of those fluctuations was limited to a 15–20% shift about the mean. Subtle changes occur in the benthic fauna around 1910, but beginning around 1940, the pattern of salinity fluctuation departs substantially from the pre-1900 pattern. Post-1940, the salinity oscillates 40–60% about the mean. This pattern is seen in all indicators measured. Around 1970, a significant but short term decline occurred in salinity. The Taylor Creek T24 core from the northern transitional zone reflects changes in freshwater flow that have occurred during this century. The upper portion of the core records a significant increase in salinity, with a slight decrease occurring in recent years. The Pass Key 37 core represents an area of very high sedimentation rates; an increase in salinity occurs in the upper portion of the core. Natural fluctuations in seagrass distribution are inferred from the shifts in relative abundance of epiphytal species preserved in the cores. All four cores show an increase in epiphytes and therefore in seagrass coverage during this century. An increase also occurs in epiphytal species that can dwell on either Thalassia or macro-algal mats associated with Thalassia beds. These data suggest an increase in algal-mats has occurred during this century. The Bob Allen 6A core records an extensive period during the 1800's of little to no vegetative cover of the substrate based on the near absence of epiphytic species in that segment of the core. Following this period, the epiphytal species increase rapidly in abundance, implying that vegetation may have the ability to disseminate rapidly.

Florida↗

USGS1961

Dacitic ash-flow sheet near Superior and Globe, Arizona

Remnants of a dacitic ash-flow sheet near Globe, Miama, and Superia, Arizona cover about 100 square miles; before erosion the area covered by the sheet was at least 400 square miles and perhaps as much as 1,500 square miles. Its maximum thickness is about 2,000 feet, its average thickness is about 500 feet, and its original volume was at least 40 cubic miles. It was erupted on an eroded surface with considerable relief. The main part of the deposit was thought by early workers to be a lava flow. Even after the distinctive character of welded tuffs and related rocks was discovered, the nature and origin of this deposit remained dubious because textures did not correspond to those in other welded tuff bodies. Yet a lava flow as silicic as this dacite would be viscous instead of spreading out as an extensive sheet. The purpose of this investigation has been to study the deposit, resolve the inconsistencies, and deduce its origin and history. Five stratigraphic zones are distinguished according to differences in the groundmass. From bottom to top the zones are basal tuff, vitrophyre, brown zone, gray zone, and white zone. The three upper zones are distinguished by colors on fresh surfaces, for each weathers to a similar shade of light reddish brown. Nonwelded basal tuff grades upward into the vitrophyre, which is a highly welded tuff. The brown and gray zones consist of highly welded tuff with a lithoidal groundmass. Degree of welding decreases progressively upward through the gray and the white zones, and the upper white zone is nonwelded. Textures are clearly outlined in the lower part of the brown zone, but upward they become more diffuse because of increasing devitrification. In the white zone, original textures are essentially obliterated, and the groundmass consists of spherulites and microcrystalline intergrowths. The chief groundmass minerals are cristobalite and sanidine, with lesser quartz and plagioclase. Phenocrysts comprise about 40 percent of the rock, and their relative proportions are fairly uniform. Almost three-fourths of the phenocrysts are plagioclase, one-tenth quartz, one-tenth biotite, and the remainder sanidine, magnetite, and hornblende, with accessory sphene, zircon, and appetite. Pumice fragments are nearly equidimensional near the top of the sheet, and downward they become progressively more flattened until they finally disappear. The zones and the pumice fragment flattening ration (ratio of length to height) provide means for recognizing several faults within the sheet. Twelve new chemical analyses are nearly uniform in composition. If named according to chemical composition, the rock would be a quartz latite, but when named according to phenocrysts, it is a dacite. From the field occurrence and the interpretation of relict textures, it is concluded that the deposit is an ash-flow sheet containing large amounts of welded tuff, and that it was emplaced by a type of nuee ardente instead of a lava flow or air-fall shower. The nature of zoning and trend of flattening ratios indicate a series of eruptions in rapid enough succession for the sheet to form a single cooling unit. Except in the lower part of the sheet, original textures were obscured by devitrification and crystallization during cooling. Nearly uniform mineralogy and chemistry suggest a single magnetic source. A nearly circular area, about 3? miles in diameter, of altered dacite and earlier volcanic rocks, bounded by intricately faulted and brecciated older rocks, may be the site of a caldera that represents the source of the eruptions.

Open-File Report↗

USGS2008

Distribution of geogenic arsenic in hydrologic systems: Controls and challenges

The presence of elevated concentration of arsenic (As) in natural hydrologic systems is regarded as the most formidable environmental crisis in the contemporary world. With its substantial presence in the drinking water of more than thirty countries worldwide, and with an affected population of more than 100 million, it has been termed as the largest mass poisoning in human history. In this special issue, we have tried to provide the most recent research advances on controls and challenges of this severe groundwater contaminant. The articles in this issue, originally presented in the 2006 Geological Society of America Annual Meeting, address the distribution of As in various geologic and geographic settings, the controls of redox and other geochemical parameters on its spatial and temporal variability, the influence of sedimentology and stratigraphy on its occurrence, and mechanisms controlling its mobility. The knowledge available from these studies should provide a roadmap for future research in arsenic contamination hydrology.

Journal of Contaminant Hydrology↗

USGS2014

Reconstruction of an early Paleozoic continental margin based on the nature of protoliths in the Nome Complex, Seward Peninsula, Alaska

The Nome Complex is a large metamorphic unit that sits along the southern boundary of the Arctic Alaska–Chukotka terrane, the largest of several micro continental fragments of uncertain origin located between the Siberian and Laurentian cratons. The Arctic Alaska–Chukotka terrane moved into its present position during the Mesozoic; its Mesozoic and older movements are central to reconstruction of Arctic tectonic history. Accurate representation of the Arctic Alaska–Chukotka terrane in reconstructions of Late Proterozoic and early Paleozoic paleogeography is hampered by the paucity of information available. Most of the Late Proterozoic to Paleozoic rocks in the Alaska–Chukotka terrane were penetratively deformed and recrystallized during the Mesozoic deformational events; primary features and relationships have been obliterated, and age control is sparse. We use a variety of geochemical, geochronologic, paleontologic, and geologic tools to read through penetrative deformation and reconstruct the protolith sequence of part of the Arctic Alaska–Chukotka terrane, the Nome Complex. We confirm that the protoliths of the Nome Complex were part of the same Late Proterozoic to Devonian continental margin as weakly deformed rocks in the southern and central part of the terrane, the Brooks Range. We show that the protoliths of the Nome Complex represent a carbonate platform (and related rocks) that underwent incipient rifting, probably during the Ordovician, and that the carbonate platform was overrun by an influx of siliciclastic detritus during the Devonian. During early phases of the transition to siliciclastic deposition, restricted basins formed that were the site of sedimentary exhalative base-metal sulfide deposition. Finally, we propose that most of the basement on which the largely Paleozoic sedimentary protolith was deposited was subducted during the Mesozoic.

Alaska↗

USGS1961

Graphic and algebraic solutions of the discordant lead-uranium age problem

Uranium-bearing minerals that give lead-uranium and lead—lead ages that are essentially in agreement, i.e. concordant, generally are considered to have had a relatively simple geologic history and to have been unaltered since their deposition. The concordant ages obtained on such materials are, therefore, assumed to approach closely the actual age of the minerals. Many uranium-bearing samples, particularly uranium ores, give the following discordant age sequences; Pb 206 U 238 < Pb 207 U 235 ⪡ Pb 207 Pb 206 "> Pb 206 U 238 <Pb 207 U 235 ⪡Pb 207 Pb 206 or, less frequently, Pb 207 Pb 206 ⪡ Pb 207 U 235 < Pb 206 U 238 "> Pb 207 Pb 206 ⪡Pb 207 U 235 <Pb 206 U 238 . These discordant age sequences have been attributed most often to uncertainties in the common lead correction, selective loss of radio-active daughter products, loss or gain of lead or uranium, or contamination by an older generation of radiogenic lead. The evaluation of discordant lead isotope age data may be separated into two operations. The first operation, with which this paper is concerned, is mechanical in nature and involves the calculation of the different possible concordant ages corresponding to the various processes assumed to have produced the discordant ages. The second operation is more difficult to define and requires, in part, some personal judgement. It includes a synthesis of the possible concordant age solutions with other independent geologic and isotopic evidence. The concordant age ultimately chosen as most acceptable should be consistent not only with the known events in the geologic history of the area, the age relations of the enclosing rocks, and the mineralogic and paragenetic evidence, but also with other independent age measurements and the isotopic data obtained on the lead in related or associated non-radioactive minerals. The calculation of the possible concordant ages from discordant age data has been greatly simplified by Wetherill's graphical method of plotting the mole ratios of radiogenic Pb 206 U 238 "> Pb 206 U 238 ( N 206 N 238 "> N 206 N 238 ) vs. radiogenic Pb 207 U 235 "> Pb 207 U 235 ( N 207 N 235 "> N 207 N 235 ) after correcting for the contaminating common Pb 206 and Pb 207 . The linear relationships noted in this graphical procedure have been extended to plots of the mole ratios of total Pb 206 U 238 "> Pb 206 U 238 ( t N 206 N 238 "> t N 206 N 238 ) vs. total Pb 207 U 235 "> Pb 207 U 235 ( t N 207 N 235 "> t N 207 N 235 ). This modification permits the calculation of concordant ages for unaltered samples using only the Pb 207 Pb 206 "> Pb 207 Pb 206 ratio of the contaminating common lead. If isotopic data are available for two samples of the same age, x and y , from the same or related deposits or outcrops, graphs of the normalized difference ratios [ ( N 206 N 204 )x − ( N 206 N 204 )y ( N 238 N 204 )x −( N 238 N 204 )y ] vs. [ ( N 207 N 204 )x − ( N 207 N 204 )y ( N 235 N 204 )x −( N 235 N 204 )y ] "> [(N 206 N 204 )x − (N 206 N 204 )y(N 238 N 204 )x −(N 238 N 204 )y] vs. [(N 207 N 204 )x − (N 207 N 204 )y(N 235 N 204 )x −(N 235 N 204 )y] can give concordant ages corrected for unknown amounts of a common lead with an unknown Pb 207 / Pb 206 ratio. (If thorium is absent the difference ratios may be normalized with the more abundant index isotope, Pb 208 .) Similar plots of tho normalized, difference ratios for three genetically related samples ( x − y ) and( x − z ), will give concordant ages corrected, in addition, for either one unknown period of past alteration or initial contamination by an older generation of radiogenic lead of unknown Pb 207 /Pb 206 ratio. Practical numerical solutions for many of tho concordant age calculations are not currently available. However, the algebraic equivalents of these new graphical methods give equations which may be programmed for computing machines. For geologically probable parameters the equations of higher order have two positive real roots that rapidly converge on the exact concordant ages corrected for original radiogenic lead and for loss or gain of lead or uranium. Modifications of these general age equations expanded only to the second degree have been derived for use with desk calculators. These graphical and algebraic methods clearly suggest both the type and minimum number of samples necessary for adequate mathematical analysis of discordant lead isotope age data. This mathematical treatment also makes it clear that discordant lead isotope data alone cannot provide the basis for the choice of one of the possible concordant age solutions. The new equations, in particular, provide an incentive to improve our physical constants, analytical techniques and sampling methods in order that we may derive all of the useful geologic information that is available in a comprehensive lead isotope age study.

Geochimica et Cosmochimica Acta↗

USGS2000

An assessment of calcite crystal growth mechanisms based on crystal size distributions

Calcite crystal growth experiments were undertaken to test a recently proposed model that relates crystal growth mechanisms to the shapes of crystal size distributions (CSDs). According to this approach, CSDs for minerals have three basic shapes: (1) asymptotic, which is related to a crystal growth mechanism having constant-rate nucleation accompanied by surface-controlled growth; (2) lognormal, which results from decaying-rate nucleation accompanied by surface-controlled growth; and (3) a theoretical, universal, steady-state curve attributed to Ostwald ripening. In addition, there is a fourth crystal growth mechanism that does not have a specific CSD shape, but which preserves the relative shapes of previously formed CSDs. This mechanism is attributed to supply-controlled growth. All three shapes were produced experimentally in the calcite growth experiments by modifying nucleation conditions and solution concentrations. The asymptotic CSD formed when additional reactants were added stepwise to the surface of solutions that were supersaturated with respect to calcite (initial Ω = 20, where Ω = 1 represents saturation), thereby leading to the continuous nucleation and growth of calcite crystals. Lognormal CSDs resulted when reactants were added continuously below the solution surface, via a submerged tube, to similarly supersaturated solutions (initial Ω = 22 to 41), thereby leading to a single nucleation event followed by surface-controlled growth. The Ostwald CSD resulted when concentrated reactants were rapidly mixed, leading initially to high levels of supersaturation (Ω >100), and to the formation and subsequent dissolution of very small nuclei, thereby yielding CSDs having small crystal size variances. The three CSD shapes likely were produced early in the crystallization process, in the nanometer crystal size range, and preserved during subsequent growth. Preservation of the relative shapes of the CSDs indicates that a supply-controlled growth mechanism was established and maintained during the constant-composition experiments. CSDs having shapes intermediate between lognormal and Ostwald also were generated by varying the initial levels of supersaturation (initial Ω = 28.2 to 69.2) in rapidly mixed solutions. Lognormal CSDs were observed for natural calcite crystals that are found in septarian concretions occurring in southeastern Colorado. Based on the model described above, these CSDs indicate initial growth by surface control, followed by supply-controlled growth. Thus, CSDs may be used to deduce crystal growth mechanisms from which geologic conditions early in the growth history of a mineral can be inferred. Conversely, CSD shape can be predicted during industrial crystallization by applying the appropriate conditions for a particular growth mechanism.

Geochimica et Cosmochimica Acta↗

USGS1974

3,800-Myr granitic gneiss in south-western Minnesota

WE have previously arrived at an age of 3,550 Myr for granitic 1 gneiss in the vicinities of Morton and Montevideo in the Minnesota River valley, south-western Minnesota. We now report new Rb–Sr analyses (Table 1) and an age of 3,800 Myr for the fine grained foliated phase of the Montevideo Gneiss of Lund 2 . The rocks have undergone a complex history of metamorphism which remains to be deciphered, but the age determinations reveal that the geological mapping and previous interpretations did not provide a proper basis for sampling.

Minnesota↗

USGS2008

Weather and Climate Monitoring Protocol, Channel Islands National Park, California

Weather and climate are strong drivers of population dynamics, plant and animal spatial distributions, community interactions, and ecosystem states. Information on local weather and climate is crucial in interpreting trends and patterns in the natural environment for resource management, research, and visitor enjoyment. This document describes the weather and climate monitoring program at the Channel Islands National Park (fig. 1), initiated in the 1990s. Manual and automated stations, which continue to evolve as technology changes, are being used for this program. The document reviews the history of weather data collection on each of the five Channel Islands National Park islands, presents program administrative structure, and provides an overview of procedures for data collection, archival, retrieval, and reporting. This program overview is accompanied by the 'Channel Islands National Park Remote Automated Weather Station Field Handbook' and the 'Channel Islands National Park Ranger Weather Station Field Handbook'. These Handbooks are maintained separately at the Channel Island National Park as 'live documents' that are updated as needed to provide a current working manual of weather and climate monitoring procedures. They are available on request from the Weather Program Manager (Channel Islands National Park, 1901 Spinnaker Dr., Ventura, CA 93001; 805.658.5700). The two Field Handbooks describe in detail protocols for managing the four remote automated weather stations (RAWS) and the seven manual Ranger Weather Stations on the islands, including standard operating procedures for equipment maintenance and calibration; manufacturer operating manuals; data retrieval and archiving; metada collection and archival; and local, agency, and vendor contracts.

Techniques and Methods↗

USGS2016

Emerging coral diseases in Kāne'ohe Bay, O'ahu, Hawai'i (USA): two major disease outbreaks of acute Montipora white syndrome

In March 2010 and January 2012, we documented 2 widespread and severe coral disease outbreaks on reefs throughout Kāne‘ohe Bay, Hawai‘i (USA). The disease, acute Montipora white syndrome (aMWS), manifested as acute and progressive tissue loss on the common reef coral M. capitata . Rapid visual surveys in 2010 revealed 338 aMWS-affected M. capitata colonies with a disease abundance of (mean ± SE) 0.02 ± 0.01 affected colonies per m of reef surveyed. In 2012, disease abundance was significantly higher (1232 aMWS-affected colonies) with 0.06 ± 0.02 affected colonies m -1 . Prior surveys found few acute tissue loss lesions in M. capitata in Kāne‘ohe Bay; thus, the high number of infected colonies found during these outbreaks would classify this as an emerging disease. Disease abundance was highest in the semi-enclosed region of south Kāne‘ohe Bay, which has a history of nutrient and sediment impacts from terrestrial runoff and stream discharge. In 2010, tagged colonies showed an average tissue loss of 24% after 1 mo, and 92% of the colonies continued to lose tissue in the subsequent month but at a slower rate (chronic tissue loss). The host-specific nature of this disease (affecting only M. capitata ) and the apparent spread of lesions between M. capitata colonies in the field suggest a potential transmissible agent. The synchronous appearance of affected colonies on multiple reefs across Kāne‘ohe Bay suggests a common underlying factor. Both outbreaks occurred during the colder, rainy winter months, and thus it is likely that some parameter(s) associated with winter environmental conditions are linked to the emergence of disease outbreaks on these reefs.

Diseases of Aquatic Organisms↗

USGS2023

Refining capture-recapture recruitment estimation methods for Atlantic sturgeon

The Atlantic sturgeon Acipenser oxyrinchus oxyrinchus was once of great commercial importance in many coastal rivers of the eastern USA. Over the 19th and 20th centuries, most historical stocks of Atlantic sturgeon were depleted by human activities. Estimating recruitment for the remaining populations is challenging due to sampling constraints, limited age data, and natural variability. However, recruitment estimates could inform recovery efforts. The objectives of this study were to compare 2 modeling approaches to estimate recruitment of age-1 Atlantic sturgeon and provide an updated index of abundance across more than a decade of sampling in the Altamaha River, Georgia. First, we constructed capture histories of river-resident juveniles, using capture-mark-recapture data collected from 2008 to 2020, and assigned ages based on length-frequency analysis. Second, we compared more traditional Huggins closed population models and a recent nonlinear extension of Huggins models—vector generalized additive models (VGAMs)—to estimate abundance of age-1 fish. Both model types indicated similar yearly age-1 abundance estimates (Huggins: 163 in 2017 to 3839 in 2010; VGAM: 312 in 2020 to 4448 in 2010), but the VGAMs provided more direct interpretation for factors that might affect capture probability (e.g. sampling effort, temperature, fish length). This study indicates that the age-1 Altamaha River Atlantic sturgeon population has remained relatively stable over the past decade and provides a long-term baseline which will better enable managers to assess the effects of either future restoration actions or environmental disturbances on the population.

Georgia↗

USGS2007

Sedimentation History of Lago Dos Bocas, Puerto Rico, 1942-2005

The Lago Dos Bocas Dam, located in the municipality of Utuado in north central Puerto Rico, was constructed in 1942 for hydroelectric power generation. The reservoir had an original storage capacity of 37.50 million cubic meters and a drainage area of 440 square kilometers. In 1948, the construction of the Lago Caonillas Dam on the Rio Caonillas branch of Lago Dos Bocas reduced the natural sediment-contributing drainage area to 310 square kilometers; therefore, the Lago Caonillas Dam is considered an effective sediment trap. Sedimentation in Lago Dos Bocas reservoir has reduced the storage capacity from 37.50 million cubic meters in 1942 to 17.26 million cubic meters in 2005, which represents a storage loss of about 54 percent. The long-term annual water-storage capacity loss rate remained nearly constant at about 320,000 cubic meters per year to about 1997. The inter-survey sedimentation rate between 1997 and 1999, however, is higher than the long-term rate at about 1.09 million cubic meters per year. Between 1999 and 2005 the rate is lower than the long-term rate at about 0.13 million cubic meters per year. The Lago Dos Bocas effective sediment-contributing drainage area had an average sediment yield of about 1,400 cubic meters per square kilometer per year between 1942 and 1997. This rate increased substantially by 1999 to about 4,600 cubic meters per square kilometer per year, probably resulting from the historical magnitude floods caused by Hurricane Georges in 1998. Recent data indicate that the Lago Dos Bocas drainage area sediment yield decreased substantially to about 570 cubic meters per square kilometer per year, which is much lower than the 1942-1997 area normalized sedimentation rate of 1,235 cubic meters per square kilometer per year. The impact of Hurricane Georges on the basin sediment yield could have been the cause of this change, since the magnitude of the floods could have nearly depleted the Lago Dos Bocas drainage area of easily erodible and transportable bed sediment. This report summarizes the historical change in water-storage capacity of Lago Dos Bocas between 1942 and 2005.

Scientific Investigations Report↗

USGS2016

Wyoming Landscape Conservation Initiative—A case study in partnership development

The Wyoming Landscape Conservation Initiative (WLCI) is a successful example of collaboration between science and natural resource management at the landscape scale. In southwestern Wyoming, expanding energy and mineral development, urban growth, and other changes in land use over recent decades, combined with landscape-scale drivers such as climate change and invasive species, have presented compelling challenges to resource managers and a diverse group of Federal, State, industry, and non-governmental organizations, as well as citizen stakeholders. To address these challenges, the WLCI was established as a collaborative forum and interagency partnership to develop and implement science-based conservation actions. About a decade after being established, this report documents the establishment and history of the WLCI, focusing on the path to success of the initiative and providing insights and details that may be useful in developing similar partnerships in other locations. Not merely retrospective, the elements of the WLCI that are presented herein are still in play, still evolving, and still contributing to the resolution of compelling conservation challenges in the Western United States. The U.S. Geological Survey has developed many successful longstanding partnerships, of which the WLCI is one example. “As the Nation’s largest water, earth, and biological science and civilian mapping agency, the U.S. Geological Survey collects, monitors, analyzes, and provides scientific understanding about natural resource conditions, issues, and problems. The diversity of our scientific expertise enables us to carry out large-scale, multi-disciplinary investigations and provide impartial scientific information to resource managers, planners, and other customers” (U.S. Geological Survey, 2016).

Wyoming↗

USGS2013

Modeling the effects of naturally occurring organic carbon on chlorinated ethene transport to a public supply well

The vulnerability of public supply wells to chlorinated ethene (CE) contamination in part depends on the availability of naturally occurring organic carbon to consume dissolved oxygen (DO) and initiate reductive dechlorination. This was quantified by building a mass balance model of the Kirkwood-Cohansey aquifer, which is widely used for public water supply in New Jersey. This model was built by telescoping a calibrated regional three-dimensional (3D) MODFLOW model to the approximate capture zone of a single public supply well that has a history of CE contamination. This local model was then used to compute a mass balance between dissolved organic carbon (DOC), particulate organic carbon (POC), and adsorbed organic carbon (AOC) that act as electron donors and DO, CEs, ferric iron, and sulfate that act as electron acceptors (EAs) using the Sequential Electron Acceptor Model in three dimensions (SEAM3D) code. SEAM3D was constrained by varying concentrations of DO and DOC entering the aquifer via recharge, varying the bioavailable fraction of POC in aquifer sediments, and comparing observed and simulated vertical concentration profiles of DO and DOC. This procedure suggests that approximately 15% of the POC present in aquifer materials is readily bioavailable. Model simulations indicate that transport of perchloroethene (PCE) and its daughter products trichloroethene (TCE), cis -dichloroethene ( cis -DCE), and vinyl chloride (VC) to the public supply well is highly sensitive to the assumed bioavailable fraction of POC, concentrations of DO entering the aquifer with recharge, and the position of simulated PCE source areas in the flow field. The results are less sensitive to assumed concentrations of DOC in aquifer recharge. The mass balance approach used in this study also indicates that hydrodynamic processes such as advective mixing, dispersion, and sorption account for a significant amount of the observed natural attenuation in this system.

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